Multiple sequence alignment - TraesCS1B01G434600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G434600 chr1B 100.000 2267 0 0 1 2267 658921941 658924207 0.000000e+00 4187.0
1 TraesCS1B01G434600 chr1B 90.398 427 28 8 853 1275 659321505 659321922 1.180000e-152 549.0
2 TraesCS1B01G434600 chr1B 91.531 307 18 7 998 1301 659002721 659003022 1.250000e-112 416.0
3 TraesCS1B01G434600 chr1B 90.164 305 22 7 1000 1301 658969181 658969480 7.590000e-105 390.0
4 TraesCS1B01G434600 chr1B 82.869 467 47 26 858 1301 659033658 659034114 2.730000e-104 388.0
5 TraesCS1B01G434600 chr1B 88.085 235 19 5 1337 1571 659327052 659327277 1.030000e-68 270.0
6 TraesCS1B01G434600 chr1B 85.408 233 20 4 1695 1915 658973158 658973388 1.750000e-56 230.0
7 TraesCS1B01G434600 chr1B 85.408 233 20 4 1695 1915 659272029 659272259 1.750000e-56 230.0
8 TraesCS1B01G434600 chr1B 84.549 233 22 4 1695 1915 659168077 659168307 3.790000e-53 219.0
9 TraesCS1B01G434600 chr1B 85.333 150 21 1 285 434 659072418 659072566 1.080000e-33 154.0
10 TraesCS1B01G434600 chr1B 84.138 145 6 10 1707 1837 659318037 659318178 8.500000e-25 124.0
11 TraesCS1B01G434600 chr1B 81.513 119 12 6 36 154 659325400 659325508 3.100000e-14 89.8
12 TraesCS1B01G434600 chr1B 100.000 32 0 0 829 860 658968969 658969000 2.430000e-05 60.2
13 TraesCS1B01G434600 chr1B 94.444 36 2 0 825 860 659316645 659316680 3.150000e-04 56.5
14 TraesCS1B01G434600 chr1D 95.426 809 21 5 474 1275 473871715 473872514 0.000000e+00 1275.0
15 TraesCS1B01G434600 chr1D 88.983 590 45 6 1695 2267 473872989 473873575 0.000000e+00 712.0
16 TraesCS1B01G434600 chr1D 93.665 442 13 7 31 471 473871044 473871471 0.000000e+00 647.0
17 TraesCS1B01G434600 chr1D 89.437 426 33 6 853 1273 473992154 473992572 5.550000e-146 527.0
18 TraesCS1B01G434600 chr1D 90.820 305 20 7 1000 1301 473961229 473961528 3.510000e-108 401.0
19 TraesCS1B01G434600 chr1D 89.407 236 21 1 1340 1571 473872755 473872990 6.120000e-76 294.0
20 TraesCS1B01G434600 chr1D 88.085 235 18 4 1337 1571 473997759 473997983 1.030000e-68 270.0
21 TraesCS1B01G434600 chr1D 96.183 131 5 0 1567 1697 108103157 108103287 4.900000e-52 215.0
22 TraesCS1B01G434600 chr1D 82.158 241 29 7 1336 1571 473966631 473966862 6.390000e-46 195.0
23 TraesCS1B01G434600 chr1D 86.413 184 16 7 253 434 473991336 473991512 2.300000e-45 193.0
24 TraesCS1B01G434600 chr1D 85.211 142 8 7 1707 1837 473988100 473988239 1.410000e-27 134.0
25 TraesCS1B01G434600 chr1D 82.313 147 8 7 1707 1837 473993252 473993396 6.620000e-21 111.0
26 TraesCS1B01G434600 chr1D 82.540 126 8 3 1725 1837 473966918 473967042 5.150000e-17 99.0
27 TraesCS1B01G434600 chr1D 97.143 35 1 0 826 860 473961024 473961058 2.430000e-05 60.2
28 TraesCS1B01G434600 chr1A 91.462 691 42 4 612 1288 568121728 568122415 0.000000e+00 933.0
29 TraesCS1B01G434600 chr1A 86.882 587 57 7 1695 2267 568122938 568123518 6.830000e-180 640.0
30 TraesCS1B01G434600 chr1A 89.532 449 28 14 858 1301 568393398 568393832 3.290000e-153 551.0
31 TraesCS1B01G434600 chr1A 91.154 260 17 1 1318 1571 568122680 568122939 4.630000e-92 348.0
32 TraesCS1B01G434600 chr1A 86.383 235 23 3 1337 1571 568399333 568399558 4.840000e-62 248.0
33 TraesCS1B01G434600 chr1A 82.095 296 43 6 1981 2267 515619182 515619476 6.250000e-61 244.0
34 TraesCS1B01G434600 chr1A 81.757 296 44 6 1981 2267 561684615 561684909 2.910000e-59 239.0
35 TraesCS1B01G434600 chr1A 96.970 132 4 0 1570 1701 202073513 202073644 2.930000e-54 222.0
36 TraesCS1B01G434600 chr1A 94.286 140 7 1 1569 1708 311814084 311814222 1.760000e-51 213.0
37 TraesCS1B01G434600 chr1A 91.549 142 10 2 478 618 568118704 568118844 6.390000e-46 195.0
38 TraesCS1B01G434600 chr1A 81.557 244 32 9 1336 1577 568384065 568384297 2.970000e-44 189.0
39 TraesCS1B01G434600 chr1A 83.871 186 14 5 1698 1871 568140602 568140783 1.800000e-36 163.0
40 TraesCS1B01G434600 chr1A 84.028 144 8 6 1707 1837 568378011 568378152 8.500000e-25 124.0
41 TraesCS1B01G434600 chr1A 83.803 142 10 8 1707 1837 568389838 568389977 3.060000e-24 122.0
42 TraesCS1B01G434600 chr1A 82.857 140 10 4 1707 1833 568394789 568394927 1.840000e-21 113.0
43 TraesCS1B01G434600 chr1A 81.132 106 14 2 36 141 568397686 568397785 1.870000e-11 80.5
44 TraesCS1B01G434600 chr1A 100.000 30 0 0 831 860 568388185 568388214 3.150000e-04 56.5
45 TraesCS1B01G434600 chr6B 85.502 269 29 7 2008 2267 30306317 30306050 2.870000e-69 272.0
46 TraesCS1B01G434600 chr5A 82.609 299 39 12 1980 2267 18750293 18749997 3.740000e-63 252.0
47 TraesCS1B01G434600 chr5A 83.704 270 33 10 2008 2267 18728460 18728192 6.250000e-61 244.0
48 TraesCS1B01G434600 chr5A 96.296 135 5 0 1566 1700 557575303 557575169 2.930000e-54 222.0
49 TraesCS1B01G434600 chr5A 96.296 135 5 0 1566 1700 557864455 557864321 2.930000e-54 222.0
50 TraesCS1B01G434600 chr7D 99.219 128 1 0 1570 1697 246023344 246023471 4.870000e-57 231.0
51 TraesCS1B01G434600 chr7D 96.241 133 4 1 1570 1701 32642312 32642180 1.360000e-52 217.0
52 TraesCS1B01G434600 chr7D 83.824 136 18 3 1846 1980 351572604 351572472 2.360000e-25 126.0
53 TraesCS1B01G434600 chr2D 97.727 132 3 0 1566 1697 138806992 138806861 6.300000e-56 228.0
54 TraesCS1B01G434600 chr2B 95.139 144 5 2 1558 1699 89552513 89552370 2.270000e-55 226.0
55 TraesCS1B01G434600 chr7A 80.952 294 47 6 1981 2267 64196362 64196071 8.150000e-55 224.0
56 TraesCS1B01G434600 chr7B 96.296 135 5 0 1563 1697 642706201 642706335 2.930000e-54 222.0
57 TraesCS1B01G434600 chr6A 95.070 142 5 2 1557 1697 594970525 594970385 2.930000e-54 222.0
58 TraesCS1B01G434600 chr4A 80.743 296 47 9 1980 2267 690263781 690263488 2.930000e-54 222.0
59 TraesCS1B01G434600 chr4A 93.243 148 8 2 1563 1710 659459125 659458980 1.360000e-52 217.0
60 TraesCS1B01G434600 chr3A 94.326 141 8 0 1563 1703 57867548 57867688 1.360000e-52 217.0
61 TraesCS1B01G434600 chr5D 94.286 140 7 1 1563 1702 335054293 335054431 1.760000e-51 213.0
62 TraesCS1B01G434600 chr3D 80.412 291 47 6 1981 2267 583547035 583547319 1.760000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G434600 chr1B 658921941 658924207 2266 False 4187.000000 4187 100.000000 1 2267 1 chr1B.!!$F1 2266
1 TraesCS1B01G434600 chr1B 658968969 658973388 4419 False 226.733333 390 91.857333 829 1915 3 chr1B.!!$F7 1086
2 TraesCS1B01G434600 chr1B 659316645 659327277 10632 False 217.860000 549 87.715600 36 1837 5 chr1B.!!$F8 1801
3 TraesCS1B01G434600 chr1D 473871044 473873575 2531 False 732.000000 1275 91.870250 31 2267 4 chr1D.!!$F3 2236
4 TraesCS1B01G434600 chr1D 473988100 473993396 5296 False 241.250000 527 85.843500 253 1837 4 chr1D.!!$F6 1584
5 TraesCS1B01G434600 chr1D 473961024 473961528 504 False 230.600000 401 93.981500 826 1301 2 chr1D.!!$F4 475
6 TraesCS1B01G434600 chr1A 568118704 568123518 4814 False 529.000000 933 90.261750 478 2267 4 chr1A.!!$F7 1789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.033991 TTACGAGGAGCTCTCTGCCT 60.034 55.0 14.64 1.35 44.23 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 13177 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.227764 CACCTGTGTGCAGCTCTGT 60.228 57.895 0.00 0.00 41.26 3.41
19 20 0.816825 CACCTGTGTGCAGCTCTGTT 60.817 55.000 0.00 0.00 41.26 3.16
20 21 0.533755 ACCTGTGTGCAGCTCTGTTC 60.534 55.000 0.00 0.00 41.26 3.18
21 22 0.250209 CCTGTGTGCAGCTCTGTTCT 60.250 55.000 0.00 0.00 41.26 3.01
23 24 0.250038 TGTGTGCAGCTCTGTTCTCC 60.250 55.000 0.00 0.00 0.00 3.71
25 26 0.034476 TGTGCAGCTCTGTTCTCCTG 59.966 55.000 0.00 0.00 0.00 3.86
27 28 0.034476 TGCAGCTCTGTTCTCCTGTG 59.966 55.000 0.00 0.00 0.00 3.66
28 29 0.673022 GCAGCTCTGTTCTCCTGTGG 60.673 60.000 0.00 0.00 0.00 4.17
29 30 0.036577 CAGCTCTGTTCTCCTGTGGG 60.037 60.000 0.00 0.00 0.00 4.61
31 32 1.079543 CTCTGTTCTCCTGTGGGCG 60.080 63.158 0.00 0.00 0.00 6.13
32 33 2.046892 CTGTTCTCCTGTGGGCGG 60.047 66.667 0.00 0.00 0.00 6.13
62 63 0.033991 TTACGAGGAGCTCTCTGCCT 60.034 55.000 14.64 1.35 44.23 4.75
70 71 0.105555 AGCTCTCTGCCTATCCAGCT 60.106 55.000 0.00 0.00 44.23 4.24
77 78 0.689055 TGCCTATCCAGCTATGCCAG 59.311 55.000 0.00 0.00 0.00 4.85
79 80 1.649321 CCTATCCAGCTATGCCAGGA 58.351 55.000 0.00 4.29 37.58 3.86
80 81 2.194859 CCTATCCAGCTATGCCAGGAT 58.805 52.381 15.14 15.14 43.23 3.24
82 83 1.738474 ATCCAGCTATGCCAGGATCA 58.262 50.000 7.89 0.00 38.87 2.92
83 84 1.738474 TCCAGCTATGCCAGGATCAT 58.262 50.000 0.00 0.00 30.24 2.45
84 85 1.350019 TCCAGCTATGCCAGGATCATG 59.650 52.381 0.00 0.00 30.24 3.07
85 86 1.166129 CAGCTATGCCAGGATCATGC 58.834 55.000 0.73 0.00 0.00 4.06
86 87 0.769247 AGCTATGCCAGGATCATGCA 59.231 50.000 0.73 4.44 39.68 3.96
87 88 0.879765 GCTATGCCAGGATCATGCAC 59.120 55.000 0.73 0.00 37.92 4.57
88 89 1.154197 CTATGCCAGGATCATGCACG 58.846 55.000 0.73 0.00 37.92 5.34
89 90 0.250424 TATGCCAGGATCATGCACGG 60.250 55.000 0.73 0.00 37.92 4.94
90 91 3.589881 GCCAGGATCATGCACGGC 61.590 66.667 0.73 0.00 0.00 5.68
91 92 2.191375 CCAGGATCATGCACGGCT 59.809 61.111 0.73 0.00 0.00 5.52
170 1102 3.619767 AGAGCAGAGCACGCACCA 61.620 61.111 0.00 0.00 0.00 4.17
199 1131 7.840342 ATTCATCGATCCATATTACTCTTGC 57.160 36.000 0.00 0.00 0.00 4.01
313 4809 1.406539 GGCATGTGATCAATGTGACCC 59.593 52.381 0.00 0.00 0.00 4.46
386 4883 5.938125 TCTAAATGCTTCACAGGTTTCTACC 59.062 40.000 0.00 0.00 45.39 3.18
471 5027 3.497297 TGTCAAATGCATGCAAGCTAG 57.503 42.857 26.68 13.02 34.99 3.42
472 5028 2.190981 GTCAAATGCATGCAAGCTAGC 58.809 47.619 26.68 6.62 34.99 3.42
627 8315 6.706270 ACAACATACATATTCGGATTCAGACC 59.294 38.462 0.00 0.00 0.00 3.85
640 8328 1.226974 CAGACCCGACGAATGCGAT 60.227 57.895 0.00 0.00 41.64 4.58
653 8341 6.088217 CGACGAATGCGATAGTTGATTTCTAT 59.912 38.462 0.00 0.00 41.64 1.98
699 8393 9.881649 AGGCTAGATGATGTGTATAATAATGTG 57.118 33.333 0.00 0.00 0.00 3.21
900 8762 1.002033 GCAGCAAGAGACACCAAACAG 60.002 52.381 0.00 0.00 0.00 3.16
924 8786 1.891811 CACCAGAGCTCTCTCAAGACA 59.108 52.381 14.96 0.00 41.81 3.41
925 8787 2.496871 CACCAGAGCTCTCTCAAGACAT 59.503 50.000 14.96 0.00 41.81 3.06
926 8788 2.760092 ACCAGAGCTCTCTCAAGACATC 59.240 50.000 14.96 0.00 41.81 3.06
929 8791 3.695556 CAGAGCTCTCTCAAGACATCAGA 59.304 47.826 14.96 0.00 41.81 3.27
931 8793 4.957954 AGAGCTCTCTCAAGACATCAGAAT 59.042 41.667 11.45 0.00 41.81 2.40
957 8837 5.300539 TCAGATACAAGAAGCTAGCACTAGG 59.699 44.000 18.83 13.10 33.87 3.02
1020 8904 3.425713 TCTTCCGGGTCGTCGTCG 61.426 66.667 0.00 0.00 38.55 5.12
1186 9070 4.680237 TGCGACGCCACTTCCAGG 62.680 66.667 18.69 0.00 0.00 4.45
1201 9085 2.031616 AGGTCCTCGTCGACGACA 59.968 61.111 34.97 21.91 44.22 4.35
1205 9089 0.247735 GTCCTCGTCGACGACATCAG 60.248 60.000 34.97 24.11 44.22 2.90
1292 9186 9.950496 AAAGGTATATATATTCCTCAAGCACAG 57.050 33.333 18.31 0.00 33.03 3.66
1313 9208 6.951198 CACAGATAGGATGGTCTACTCCTAAT 59.049 42.308 2.65 0.00 45.01 1.73
1314 9209 8.110271 CACAGATAGGATGGTCTACTCCTAATA 58.890 40.741 2.65 0.00 45.01 0.98
1324 12797 6.269307 TGGTCTACTCCTAATATAACAAGGCC 59.731 42.308 0.00 0.00 0.00 5.19
1347 12821 7.201582 GGCCTTTTCATTCATAGATTTTTGCTG 60.202 37.037 0.00 0.00 0.00 4.41
1360 12834 3.540314 TTTTGCTGGATTTTGTGCAGT 57.460 38.095 0.00 0.00 46.94 4.40
1395 12880 0.874390 CACACATTCACCCAACCTCG 59.126 55.000 0.00 0.00 0.00 4.63
1423 12908 7.114953 GCCTACATAGAACAAAGCAAAAGAAAC 59.885 37.037 0.00 0.00 0.00 2.78
1464 12949 9.436957 CACACTATTTGAGTACCTGTATTTCTT 57.563 33.333 0.00 0.00 35.64 2.52
1474 12959 9.665264 GAGTACCTGTATTTCTTTTCAAACTTG 57.335 33.333 0.00 0.00 0.00 3.16
1555 13054 0.389391 ACTCCAGTGGACAGTGAACG 59.611 55.000 8.12 0.00 33.67 3.95
1575 13074 4.625028 ACGAAGTTGTACAAACTACTCCC 58.375 43.478 10.51 0.00 37.78 4.30
1576 13075 4.343239 ACGAAGTTGTACAAACTACTCCCT 59.657 41.667 10.51 0.00 37.78 4.20
1577 13076 4.922103 CGAAGTTGTACAAACTACTCCCTC 59.078 45.833 10.51 0.00 40.20 4.30
1578 13077 4.886496 AGTTGTACAAACTACTCCCTCC 57.114 45.455 10.51 0.00 37.12 4.30
1579 13078 3.257624 AGTTGTACAAACTACTCCCTCCG 59.742 47.826 10.51 0.00 37.12 4.63
1580 13079 2.880443 TGTACAAACTACTCCCTCCGT 58.120 47.619 0.00 0.00 0.00 4.69
1581 13080 3.233507 TGTACAAACTACTCCCTCCGTT 58.766 45.455 0.00 0.00 0.00 4.44
1582 13081 3.256631 TGTACAAACTACTCCCTCCGTTC 59.743 47.826 0.00 0.00 0.00 3.95
1583 13082 1.622312 ACAAACTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
1584 13083 0.893447 AAACTACTCCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
1585 13084 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
1586 13085 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1587 13086 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
1588 13087 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1589 13088 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1590 13089 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1591 13090 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1592 13091 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1593 13092 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1594 13093 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1595 13094 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1596 13095 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
1597 13096 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1598 13097 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
1599 13098 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
1600 13099 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
1601 13100 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
1602 13101 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
1603 13102 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
1604 13103 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
1605 13104 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
1606 13105 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
1607 13106 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
1608 13107 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
1615 13114 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
1616 13115 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1617 13116 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1618 13117 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1619 13118 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1620 13119 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
1626 13125 9.640963 ATTTGTCTAGATACGGATGTATTTAGC 57.359 33.333 0.00 5.14 41.84 3.09
1627 13126 7.754851 TGTCTAGATACGGATGTATTTAGCA 57.245 36.000 0.00 6.90 41.84 3.49
1628 13127 7.591165 TGTCTAGATACGGATGTATTTAGCAC 58.409 38.462 0.00 7.67 41.84 4.40
1629 13128 7.447545 TGTCTAGATACGGATGTATTTAGCACT 59.552 37.037 0.00 0.00 41.84 4.40
1630 13129 8.944029 GTCTAGATACGGATGTATTTAGCACTA 58.056 37.037 0.00 0.00 41.84 2.74
1631 13130 9.511272 TCTAGATACGGATGTATTTAGCACTAA 57.489 33.333 7.68 0.00 41.84 2.24
1634 13133 9.998106 AGATACGGATGTATTTAGCACTAAAAT 57.002 29.630 6.92 0.00 41.37 1.82
1636 13135 9.772973 ATACGGATGTATTTAGCACTAAAATGA 57.227 29.630 6.92 0.00 38.10 2.57
1637 13136 8.142994 ACGGATGTATTTAGCACTAAAATGAG 57.857 34.615 6.92 0.00 38.38 2.90
1638 13137 7.769044 ACGGATGTATTTAGCACTAAAATGAGT 59.231 33.333 6.92 0.42 38.38 3.41
1639 13138 8.276325 CGGATGTATTTAGCACTAAAATGAGTC 58.724 37.037 6.92 3.30 38.38 3.36
1640 13139 9.331282 GGATGTATTTAGCACTAAAATGAGTCT 57.669 33.333 6.92 0.00 38.38 3.24
1670 13169 8.311395 ACATCTGTATCTAGACAAATCCAAGA 57.689 34.615 0.00 0.00 0.00 3.02
1671 13170 8.200792 ACATCTGTATCTAGACAAATCCAAGAC 58.799 37.037 0.00 0.00 0.00 3.01
1672 13171 7.718334 TCTGTATCTAGACAAATCCAAGACA 57.282 36.000 0.00 0.00 0.00 3.41
1673 13172 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
1674 13173 8.253810 TCTGTATCTAGACAAATCCAAGACAAG 58.746 37.037 0.00 0.00 0.00 3.16
1675 13174 7.907389 TGTATCTAGACAAATCCAAGACAAGT 58.093 34.615 0.00 0.00 0.00 3.16
1676 13175 9.031537 TGTATCTAGACAAATCCAAGACAAGTA 57.968 33.333 0.00 0.00 0.00 2.24
1677 13176 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
1679 13178 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
1680 13179 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
1681 13180 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
1682 13181 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
1683 13182 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
1684 13183 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
1685 13184 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
1705 13204 5.318630 GAACGGAGGGAGTAGATCTCTTAT 58.681 45.833 0.00 0.00 39.60 1.73
1722 13250 5.124457 TCTCTTATGAAGCAAGCAATCCAAC 59.876 40.000 0.00 0.00 0.00 3.77
1723 13251 4.766373 TCTTATGAAGCAAGCAATCCAACA 59.234 37.500 0.00 0.00 0.00 3.33
1761 13289 4.184629 CAGGAGGAAAAGGAGTATTGTCG 58.815 47.826 0.00 0.00 0.00 4.35
1837 13392 4.998788 TCTCGTCTACATTCATGAACTGG 58.001 43.478 11.07 6.18 0.00 4.00
1996 15812 5.765510 TCAATACTGTTGGGGCTGAATAAT 58.234 37.500 0.00 0.00 0.00 1.28
2025 15841 2.819019 TGATGCACAAATTCACCGACAT 59.181 40.909 0.00 0.00 0.00 3.06
2046 15862 1.730176 GCAAATATGCGCACTACACG 58.270 50.000 14.90 0.40 43.83 4.49
2047 15863 1.594518 GCAAATATGCGCACTACACGG 60.595 52.381 14.90 0.00 43.83 4.94
2086 15902 6.564328 AGTGAACTTTGAGGACAATTTCAAC 58.436 36.000 0.00 0.00 38.69 3.18
2097 16973 6.569780 AGGACAATTTCAACCAACAAGTAAC 58.430 36.000 0.00 0.00 0.00 2.50
2116 16992 6.123651 AGTAACCAGTGGAATAACACAAACA 58.876 36.000 18.40 0.00 43.72 2.83
2135 17011 8.602328 CACAAACAAACATACACATGTGAAAAT 58.398 29.630 31.94 17.92 44.83 1.82
2161 17037 8.869109 TGATTTAATGTGGAAAAACCTCTTCAT 58.131 29.630 0.00 0.00 39.86 2.57
2198 17074 1.990060 ACTGCTAGCCGGTCCACAT 60.990 57.895 13.29 0.00 0.00 3.21
2202 17078 0.177141 GCTAGCCGGTCCACATAACA 59.823 55.000 2.29 0.00 0.00 2.41
2212 17088 4.745125 CGGTCCACATAACATCACTATGAC 59.255 45.833 0.00 0.00 36.54 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.250209 AGAACAGAGCTGCACACAGG 60.250 55.000 1.02 0.00 44.63 4.00
5 6 0.034616 AGGAGAACAGAGCTGCACAC 59.965 55.000 1.02 0.00 0.00 3.82
7 8 0.034616 ACAGGAGAACAGAGCTGCAC 59.965 55.000 1.02 0.00 0.00 4.57
8 9 0.034476 CACAGGAGAACAGAGCTGCA 59.966 55.000 1.02 0.00 0.00 4.41
9 10 0.673022 CCACAGGAGAACAGAGCTGC 60.673 60.000 0.00 0.00 0.00 5.25
11 12 1.835927 GCCCACAGGAGAACAGAGCT 61.836 60.000 0.00 0.00 33.47 4.09
12 13 1.376553 GCCCACAGGAGAACAGAGC 60.377 63.158 0.00 0.00 33.47 4.09
16 17 4.329545 GCCGCCCACAGGAGAACA 62.330 66.667 0.00 0.00 34.21 3.18
34 35 4.789075 TCCTCGTAAGGCGTGCGC 62.789 66.667 8.17 8.17 43.02 6.09
35 36 2.579787 CTCCTCGTAAGGCGTGCG 60.580 66.667 4.37 4.37 43.02 5.34
36 37 2.886124 GCTCCTCGTAAGGCGTGC 60.886 66.667 0.00 0.00 43.02 5.34
37 38 1.226717 GAGCTCCTCGTAAGGCGTG 60.227 63.158 0.87 0.00 43.02 5.34
62 63 2.906568 TGATCCTGGCATAGCTGGATA 58.093 47.619 5.30 0.00 39.95 2.59
70 71 0.250424 CCGTGCATGATCCTGGCATA 60.250 55.000 7.72 0.00 40.05 3.14
77 78 1.890979 CCTGAGCCGTGCATGATCC 60.891 63.158 7.72 0.00 0.00 3.36
79 80 2.515523 GCCTGAGCCGTGCATGAT 60.516 61.111 7.72 0.00 0.00 2.45
80 81 3.709633 AGCCTGAGCCGTGCATGA 61.710 61.111 7.72 0.00 41.25 3.07
82 83 3.709633 TCAGCCTGAGCCGTGCAT 61.710 61.111 0.00 0.00 41.25 3.96
83 84 4.687215 GTCAGCCTGAGCCGTGCA 62.687 66.667 0.00 0.00 41.25 4.57
84 85 4.687215 TGTCAGCCTGAGCCGTGC 62.687 66.667 0.00 0.00 41.25 5.34
85 86 2.740055 GTGTCAGCCTGAGCCGTG 60.740 66.667 0.00 0.00 41.25 4.94
86 87 2.513026 GATGTGTCAGCCTGAGCCGT 62.513 60.000 0.00 0.00 41.25 5.68
87 88 1.812922 GATGTGTCAGCCTGAGCCG 60.813 63.158 0.00 0.00 41.25 5.52
88 89 1.812922 CGATGTGTCAGCCTGAGCC 60.813 63.158 0.00 0.00 41.25 4.70
89 90 2.459442 GCGATGTGTCAGCCTGAGC 61.459 63.158 0.00 0.00 40.32 4.26
90 91 1.812922 GGCGATGTGTCAGCCTGAG 60.813 63.158 0.00 0.00 46.83 3.35
91 92 2.265739 GGCGATGTGTCAGCCTGA 59.734 61.111 0.00 0.00 46.83 3.86
125 1057 2.941064 CTCACATCATCAACGGAAGCAT 59.059 45.455 0.00 0.00 0.00 3.79
126 1058 2.349590 CTCACATCATCAACGGAAGCA 58.650 47.619 0.00 0.00 0.00 3.91
127 1059 1.063174 GCTCACATCATCAACGGAAGC 59.937 52.381 0.00 0.00 0.00 3.86
199 1131 8.813643 ATAGCAACTTTAATTAGCTACGGTAG 57.186 34.615 10.83 10.83 40.21 3.18
440 4996 3.887741 TGCATTTGACAACAGTTCATCG 58.112 40.909 0.00 0.00 0.00 3.84
448 5004 2.136728 GCTTGCATGCATTTGACAACA 58.863 42.857 23.37 1.46 0.00 3.33
471 5027 5.408604 GTGTGTGGGTGCATATTATACTAGC 59.591 44.000 0.00 0.00 0.00 3.42
472 5028 6.521162 TGTGTGTGGGTGCATATTATACTAG 58.479 40.000 0.00 0.00 0.00 2.57
627 8315 1.835121 TCAACTATCGCATTCGTCGG 58.165 50.000 0.00 0.00 36.96 4.79
699 8393 5.979288 ACGTCTGGAGTTGTATATATCCC 57.021 43.478 0.00 0.00 0.00 3.85
712 8412 3.184581 GCTGTAGAAAACAACGTCTGGAG 59.815 47.826 0.00 0.00 37.74 3.86
900 8762 1.261480 TGAGAGAGCTCTGGTGGTTC 58.739 55.000 23.91 4.70 40.61 3.62
925 8787 8.303156 GCTAGCTTCTTGTATCTGATATTCTGA 58.697 37.037 7.70 0.00 0.00 3.27
926 8788 8.087136 TGCTAGCTTCTTGTATCTGATATTCTG 58.913 37.037 17.23 0.00 0.00 3.02
929 8791 7.961351 AGTGCTAGCTTCTTGTATCTGATATT 58.039 34.615 17.23 0.00 0.00 1.28
931 8793 6.968263 AGTGCTAGCTTCTTGTATCTGATA 57.032 37.500 17.23 0.00 0.00 2.15
957 8837 3.769844 TCCCTGGTGAGATTCTACTTGAC 59.230 47.826 0.00 0.00 0.00 3.18
1173 9057 2.526873 AGGACCTGGAAGTGGCGT 60.527 61.111 0.00 0.00 0.00 5.68
1201 9085 2.487934 GCCATACTCGATGTTGCTGAT 58.512 47.619 0.00 0.00 33.19 2.90
1205 9089 1.934463 CGGCCATACTCGATGTTGC 59.066 57.895 2.24 0.00 33.19 4.17
1313 9208 9.866655 ATCTATGAATGAAAAGGCCTTGTTATA 57.133 29.630 21.33 1.67 0.00 0.98
1314 9209 8.773033 ATCTATGAATGAAAAGGCCTTGTTAT 57.227 30.769 21.33 13.61 0.00 1.89
1316 9211 7.486407 AATCTATGAATGAAAAGGCCTTGTT 57.514 32.000 21.33 15.21 0.00 2.83
1324 12797 8.991243 TCCAGCAAAAATCTATGAATGAAAAG 57.009 30.769 0.00 0.00 0.00 2.27
1347 12821 2.362077 AGTGTGGAACTGCACAAAATCC 59.638 45.455 5.56 0.00 37.88 3.01
1360 12834 6.768381 TGAATGTGTGTGTAAATAGTGTGGAA 59.232 34.615 0.00 0.00 0.00 3.53
1395 12880 5.371115 TTTGCTTTGTTCTATGTAGGCAC 57.629 39.130 0.00 0.00 0.00 5.01
1423 12908 6.824305 AATAGTGTGGAGGATTGTTCTTTG 57.176 37.500 0.00 0.00 0.00 2.77
1464 12949 7.716998 AGCTTATCTGAACTCTCAAGTTTGAAA 59.283 33.333 0.00 0.00 45.80 2.69
1474 12959 5.518487 GCACTGTAAGCTTATCTGAACTCTC 59.482 44.000 9.88 0.00 37.60 3.20
1555 13054 5.236282 GGAGGGAGTAGTTTGTACAACTTC 58.764 45.833 8.07 1.17 0.00 3.01
1579 13078 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
1580 13079 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
1581 13080 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
1582 13081 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
1589 13088 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
1590 13089 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1591 13090 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1592 13091 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1593 13092 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1594 13093 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1600 13099 9.640963 GCTAAATACATCCGTATCTAGACAAAT 57.359 33.333 0.00 0.00 37.34 2.32
1601 13100 8.635328 TGCTAAATACATCCGTATCTAGACAAA 58.365 33.333 0.00 0.00 37.34 2.83
1602 13101 8.080417 GTGCTAAATACATCCGTATCTAGACAA 58.920 37.037 0.00 0.00 37.34 3.18
1603 13102 7.447545 AGTGCTAAATACATCCGTATCTAGACA 59.552 37.037 0.00 0.00 37.34 3.41
1604 13103 7.818642 AGTGCTAAATACATCCGTATCTAGAC 58.181 38.462 0.00 0.00 37.34 2.59
1605 13104 7.997773 AGTGCTAAATACATCCGTATCTAGA 57.002 36.000 0.00 0.00 37.34 2.43
1608 13107 9.998106 ATTTTAGTGCTAAATACATCCGTATCT 57.002 29.630 5.37 0.00 37.34 1.98
1610 13109 9.772973 TCATTTTAGTGCTAAATACATCCGTAT 57.227 29.630 5.37 0.00 40.15 3.06
1611 13110 9.256477 CTCATTTTAGTGCTAAATACATCCGTA 57.744 33.333 5.37 0.00 35.27 4.02
1612 13111 7.769044 ACTCATTTTAGTGCTAAATACATCCGT 59.231 33.333 5.37 0.00 35.27 4.69
1613 13112 8.142994 ACTCATTTTAGTGCTAAATACATCCG 57.857 34.615 5.37 0.00 35.27 4.18
1614 13113 9.331282 AGACTCATTTTAGTGCTAAATACATCC 57.669 33.333 5.37 0.00 35.27 3.51
1644 13143 9.421399 TCTTGGATTTGTCTAGATACAGATGTA 57.579 33.333 0.00 0.00 34.67 2.29
1645 13144 8.200792 GTCTTGGATTTGTCTAGATACAGATGT 58.799 37.037 0.00 0.00 0.00 3.06
1646 13145 8.200120 TGTCTTGGATTTGTCTAGATACAGATG 58.800 37.037 0.00 0.00 0.00 2.90
1647 13146 8.311395 TGTCTTGGATTTGTCTAGATACAGAT 57.689 34.615 0.00 0.00 0.00 2.90
1648 13147 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
1649 13148 8.037758 ACTTGTCTTGGATTTGTCTAGATACAG 58.962 37.037 0.00 0.00 0.00 2.74
1650 13149 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
1651 13150 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1653 13152 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
1654 13153 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
1655 13154 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
1656 13155 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
1657 13156 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
1658 13157 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
1659 13158 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
1660 13159 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
1661 13160 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
1662 13161 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
1663 13162 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
1664 13163 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
1665 13164 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
1666 13165 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
1667 13166 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1668 13167 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
1669 13168 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1670 13169 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1671 13170 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1672 13171 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1673 13172 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1674 13173 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1675 13174 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1676 13175 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1677 13176 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
1678 13177 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
1679 13178 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
1680 13179 0.953003 GATCTACTCCCTCCGTTCCG 59.047 60.000 0.00 0.00 0.00 4.30
1681 13180 2.158579 AGAGATCTACTCCCTCCGTTCC 60.159 54.545 0.00 0.00 45.96 3.62
1682 13181 3.217681 AGAGATCTACTCCCTCCGTTC 57.782 52.381 0.00 0.00 45.96 3.95
1683 13182 3.673543 AAGAGATCTACTCCCTCCGTT 57.326 47.619 0.00 0.00 45.96 4.44
1684 13183 4.351407 TCATAAGAGATCTACTCCCTCCGT 59.649 45.833 0.00 0.00 45.96 4.69
1685 13184 4.912586 TCATAAGAGATCTACTCCCTCCG 58.087 47.826 0.00 0.00 45.96 4.63
1686 13185 5.185056 GCTTCATAAGAGATCTACTCCCTCC 59.815 48.000 0.00 0.00 45.96 4.30
1687 13186 5.772672 TGCTTCATAAGAGATCTACTCCCTC 59.227 44.000 0.00 0.00 45.96 4.30
1688 13187 5.710646 TGCTTCATAAGAGATCTACTCCCT 58.289 41.667 0.00 0.00 45.96 4.20
1689 13188 6.412362 TTGCTTCATAAGAGATCTACTCCC 57.588 41.667 0.00 0.00 45.96 4.30
1690 13189 5.925969 GCTTGCTTCATAAGAGATCTACTCC 59.074 44.000 0.00 0.00 45.96 3.85
1691 13190 6.511416 TGCTTGCTTCATAAGAGATCTACTC 58.489 40.000 0.00 0.00 45.22 2.59
1692 13191 6.477053 TGCTTGCTTCATAAGAGATCTACT 57.523 37.500 0.00 0.00 0.00 2.57
1693 13192 7.095271 GGATTGCTTGCTTCATAAGAGATCTAC 60.095 40.741 0.00 0.00 0.00 2.59
1705 13204 2.030371 TGTGTTGGATTGCTTGCTTCA 58.970 42.857 0.00 0.00 0.00 3.02
1722 13250 6.414732 TCCTCCTGTTATTCTAACCAATGTG 58.585 40.000 0.00 0.00 0.00 3.21
1723 13251 6.636454 TCCTCCTGTTATTCTAACCAATGT 57.364 37.500 0.00 0.00 0.00 2.71
1761 13289 8.780249 ACCTAACAATACTTTGTACACACAATC 58.220 33.333 0.00 0.00 45.30 2.67
1837 13392 9.856488 TGTCAATATACTCTAACAGACAACTTC 57.144 33.333 0.00 0.00 32.46 3.01
1996 15812 6.389091 GGTGAATTTGTGCATCACATCTTTA 58.611 36.000 16.85 0.00 44.16 1.85
2025 15841 1.400142 GTGTAGTGCGCATATTTGCCA 59.600 47.619 15.91 0.74 46.57 4.92
2037 15853 0.605589 AAAAGGAGGCCGTGTAGTGC 60.606 55.000 0.00 0.00 0.00 4.40
2046 15862 3.418684 TCACTACAAGAAAAGGAGGCC 57.581 47.619 0.00 0.00 0.00 5.19
2047 15863 4.390264 AGTTCACTACAAGAAAAGGAGGC 58.610 43.478 0.00 0.00 0.00 4.70
2086 15902 5.533154 TGTTATTCCACTGGTTACTTGTTGG 59.467 40.000 0.00 0.00 0.00 3.77
2097 16973 5.655488 TGTTTGTTTGTGTTATTCCACTGG 58.345 37.500 0.00 0.00 36.30 4.00
2135 17011 8.243961 TGAAGAGGTTTTTCCACATTAAATCA 57.756 30.769 0.00 0.00 39.02 2.57
2182 17058 0.177141 GTTATGTGGACCGGCTAGCA 59.823 55.000 18.24 0.00 0.00 3.49
2186 17062 0.908910 TGATGTTATGTGGACCGGCT 59.091 50.000 0.00 0.00 0.00 5.52
2190 17066 5.670485 TGTCATAGTGATGTTATGTGGACC 58.330 41.667 0.00 0.00 34.41 4.46
2202 17078 9.842775 ACTTGTATTCATCATTGTCATAGTGAT 57.157 29.630 0.00 0.00 36.30 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.