Multiple sequence alignment - TraesCS1B01G434500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G434500 chr1B 100.000 6515 0 0 1 6515 658914154 658920668 0.000000e+00 12032.0
1 TraesCS1B01G434500 chr1B 88.932 515 50 5 207 717 637285798 637286309 4.290000e-176 628.0
2 TraesCS1B01G434500 chr1B 87.525 505 49 5 983 1476 619529331 619528830 7.330000e-159 571.0
3 TraesCS1B01G434500 chr1B 89.421 397 38 4 1078 1472 619430534 619430140 1.260000e-136 497.0
4 TraesCS1B01G434500 chr1B 85.185 432 64 0 1027 1458 619535631 619535200 1.670000e-120 444.0
5 TraesCS1B01G434500 chr1B 89.500 200 19 2 2 200 637285563 637285761 1.080000e-62 252.0
6 TraesCS1B01G434500 chr1B 85.556 180 16 2 5943 6121 658926501 658926671 5.190000e-41 180.0
7 TraesCS1B01G434500 chr1B 86.207 116 14 2 3994 4107 314565459 314565344 2.470000e-24 124.0
8 TraesCS1B01G434500 chr1D 92.546 5849 235 69 372 6096 473862078 473867849 0.000000e+00 8200.0
9 TraesCS1B01G434500 chr1D 91.617 501 40 2 976 1476 451140729 451140231 0.000000e+00 691.0
10 TraesCS1B01G434500 chr1D 92.083 240 17 2 6115 6353 103032240 103032002 2.910000e-88 337.0
11 TraesCS1B01G434500 chr1D 94.416 197 11 0 1 197 473861709 473861905 2.950000e-78 303.0
12 TraesCS1B01G434500 chr1D 92.908 141 10 0 1332 1472 451243881 451243741 8.560000e-49 206.0
13 TraesCS1B01G434500 chr1D 83.486 218 20 7 5907 6121 473875872 473876076 8.620000e-44 189.0
14 TraesCS1B01G434500 chr1D 91.837 98 4 1 6403 6500 473867895 473867988 4.100000e-27 134.0
15 TraesCS1B01G434500 chr1A 93.187 4550 184 49 1555 6061 568109098 568113564 0.000000e+00 6569.0
16 TraesCS1B01G434500 chr1A 88.642 1303 79 34 207 1476 568107798 568109064 0.000000e+00 1522.0
17 TraesCS1B01G434500 chr1A 91.417 501 41 2 976 1476 545896726 545896228 0.000000e+00 686.0
18 TraesCS1B01G434500 chr1A 93.249 237 15 1 6118 6353 536896227 536896463 1.340000e-91 348.0
19 TraesCS1B01G434500 chr1A 90.000 200 20 0 1 200 568107558 568107757 6.480000e-65 259.0
20 TraesCS1B01G434500 chr1A 88.732 142 9 4 6374 6515 568113649 568113783 4.040000e-37 167.0
21 TraesCS1B01G434500 chr1A 79.060 234 23 7 5911 6121 568127312 568127542 3.170000e-28 137.0
22 TraesCS1B01G434500 chr4B 88.544 515 52 5 207 717 11349344 11349855 9.280000e-173 617.0
23 TraesCS1B01G434500 chr4B 90.500 200 17 2 2 200 11349109 11349307 5.010000e-66 263.0
24 TraesCS1B01G434500 chr4B 92.500 40 2 1 6338 6377 464159241 464159279 1.000000e-03 56.5
25 TraesCS1B01G434500 chr7A 94.043 235 13 1 6120 6353 148252422 148252188 8.030000e-94 355.0
26 TraesCS1B01G434500 chr7A 93.191 235 14 2 6120 6353 287473782 287473549 1.740000e-90 344.0
27 TraesCS1B01G434500 chr7A 83.832 334 49 4 1027 1356 625381958 625381626 4.900000e-81 313.0
28 TraesCS1B01G434500 chr7A 85.833 120 12 5 4000 4116 94782335 94782452 8.870000e-24 122.0
29 TraesCS1B01G434500 chr4A 93.249 237 14 2 6118 6353 208931428 208931193 1.340000e-91 348.0
30 TraesCS1B01G434500 chr4A 87.200 125 14 2 3993 4115 605425141 605425265 2.450000e-29 141.0
31 TraesCS1B01G434500 chr4A 90.361 83 7 1 3548 3630 274860056 274860137 2.480000e-19 108.0
32 TraesCS1B01G434500 chr7D 93.562 233 14 1 6122 6353 265507769 265508001 4.840000e-91 346.0
33 TraesCS1B01G434500 chr7D 93.220 236 14 2 6119 6353 539382082 539381848 4.840000e-91 346.0
34 TraesCS1B01G434500 chr7D 83.533 334 50 4 1027 1356 543394159 543393827 2.280000e-79 307.0
35 TraesCS1B01G434500 chr6D 93.562 233 13 2 6122 6353 28048900 28048669 4.840000e-91 346.0
36 TraesCS1B01G434500 chr5A 92.531 241 16 2 6114 6353 549204329 549204568 1.740000e-90 344.0
37 TraesCS1B01G434500 chr5A 88.496 113 12 1 4002 4113 346175185 346175073 1.140000e-27 135.0
38 TraesCS1B01G434500 chrUn 86.777 121 14 2 3989 4107 321894204 321894324 4.100000e-27 134.0
39 TraesCS1B01G434500 chr6A 86.777 121 14 2 3989 4107 295818394 295818514 4.100000e-27 134.0
40 TraesCS1B01G434500 chr6B 87.273 110 13 1 3999 4107 93568345 93568454 2.470000e-24 124.0
41 TraesCS1B01G434500 chr2A 77.251 211 36 7 6122 6326 716885421 716885625 5.340000e-21 113.0
42 TraesCS1B01G434500 chr2A 100.000 32 0 0 6339 6370 523451928 523451897 7.050000e-05 60.2
43 TraesCS1B01G434500 chr2A 100.000 29 0 0 6342 6370 118666027 118666055 3.000000e-03 54.7
44 TraesCS1B01G434500 chr2D 96.970 33 1 0 6338 6370 382457061 382457093 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G434500 chr1B 658914154 658920668 6514 False 12032.00 12032 100.00000 1 6515 1 chr1B.!!$F1 6514
1 TraesCS1B01G434500 chr1B 619528830 619529331 501 True 571.00 571 87.52500 983 1476 1 chr1B.!!$R3 493
2 TraesCS1B01G434500 chr1B 637285563 637286309 746 False 440.00 628 89.21600 2 717 2 chr1B.!!$F3 715
3 TraesCS1B01G434500 chr1D 473861709 473867988 6279 False 2879.00 8200 92.93300 1 6500 3 chr1D.!!$F2 6499
4 TraesCS1B01G434500 chr1A 568107558 568113783 6225 False 2129.25 6569 90.14025 1 6515 4 chr1A.!!$F3 6514
5 TraesCS1B01G434500 chr4B 11349109 11349855 746 False 440.00 617 89.52200 2 717 2 chr4B.!!$F2 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 778 0.321475 AGAGCAGCTGAGAAAGTGGC 60.321 55.000 20.43 0.00 0.00 5.01 F
1488 1588 0.031721 CCAAGGTATCTACGCGGTCC 59.968 60.000 12.47 3.19 0.00 4.46 F
1895 2027 0.531311 ACCTGTTCAACGTCGAACCC 60.531 55.000 16.36 0.00 43.84 4.11 F
3182 3323 2.238395 GAGAGGTGCCTTTCAATCTCCT 59.762 50.000 4.14 0.00 35.40 3.69 F
4381 4544 1.067635 CCTCGCCTTTGAAACCCATTG 60.068 52.381 0.00 0.00 0.00 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 1661 0.817634 CGCTTCACACAGGGGAACAA 60.818 55.000 0.0 0.0 0.00 2.83 R
3480 3623 3.552132 TGCGTGCTTTATCCTGGAATA 57.448 42.857 0.0 0.0 0.00 1.75 R
3785 3928 0.106708 AGCACAGACAACGTGGACAT 59.893 50.000 0.0 0.0 34.85 3.06 R
4467 4630 0.729116 GGTCCATGTCAACATCGCTG 59.271 55.000 0.0 0.0 33.61 5.18 R
5743 5914 0.035820 GCCAGGGTTTCACCACGATA 60.036 55.000 0.0 0.0 41.02 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.917259 CGATCGAAAGCTTCTGACCG 59.083 55.000 10.26 0.00 0.00 4.79
113 114 1.447217 TGGAGACACACAGCACAGG 59.553 57.895 0.00 0.00 33.40 4.00
142 143 5.179742 CAGCATTACAACATGGCAATTGTTT 59.820 36.000 21.14 10.15 39.67 2.83
145 146 6.578172 GCATTACAACATGGCAATTGTTTTTC 59.422 34.615 21.14 8.93 39.67 2.29
200 201 7.865820 TCTGAATTCTCCCAGAATCTTGTAAT 58.134 34.615 7.05 0.00 43.67 1.89
201 202 8.331740 TCTGAATTCTCCCAGAATCTTGTAATT 58.668 33.333 7.05 0.00 43.67 1.40
202 203 8.884124 TGAATTCTCCCAGAATCTTGTAATTT 57.116 30.769 7.05 0.00 43.67 1.82
203 204 9.312904 TGAATTCTCCCAGAATCTTGTAATTTT 57.687 29.630 7.05 0.00 43.67 1.82
238 273 2.364647 TGCTGCACAATGACAAATTCCA 59.635 40.909 0.00 0.00 0.00 3.53
263 299 7.540055 CAGAATTTTACTGAACCAAGAATGCTC 59.460 37.037 0.00 0.00 37.54 4.26
269 305 2.158475 TGAACCAAGAATGCTCCTGGTT 60.158 45.455 9.28 9.28 41.67 3.67
277 313 0.899720 ATGCTCCTGGTTGCATTTGG 59.100 50.000 18.74 0.00 46.29 3.28
296 332 5.375417 TTGGTGCATCATGAACACTAAAG 57.625 39.130 23.68 1.43 32.73 1.85
529 575 0.762461 CCTCCTCCACCTCCTCATCC 60.762 65.000 0.00 0.00 0.00 3.51
587 633 2.446802 CCCCAGCCCTCCTACTCC 60.447 72.222 0.00 0.00 0.00 3.85
642 688 3.499737 GCACGGCGGTGGAAGATG 61.500 66.667 23.86 0.00 44.54 2.90
717 766 2.403987 CATTGCGCAGAGAGCAGC 59.596 61.111 11.31 0.00 46.01 5.25
718 767 2.107292 CATTGCGCAGAGAGCAGCT 61.107 57.895 11.31 0.00 46.01 4.24
719 768 2.107292 ATTGCGCAGAGAGCAGCTG 61.107 57.895 11.31 10.11 46.01 4.24
720 769 2.517484 ATTGCGCAGAGAGCAGCTGA 62.517 55.000 20.43 0.00 46.01 4.26
721 770 2.886604 GCGCAGAGAGCAGCTGAG 60.887 66.667 20.43 0.00 46.13 3.35
722 771 2.883621 CGCAGAGAGCAGCTGAGA 59.116 61.111 20.43 0.00 46.13 3.27
729 778 0.321475 AGAGCAGCTGAGAAAGTGGC 60.321 55.000 20.43 0.00 0.00 5.01
730 779 0.321475 GAGCAGCTGAGAAAGTGGCT 60.321 55.000 20.43 2.94 39.25 4.75
781 841 4.020039 ACCCAAAACGATTTAATTTCCCCC 60.020 41.667 0.00 0.00 0.00 5.40
826 897 0.622665 CAGACCTGAAGAGGCCCATT 59.377 55.000 0.00 0.00 44.33 3.16
830 901 1.065418 ACCTGAAGAGGCCCATTAACG 60.065 52.381 0.00 0.00 44.33 3.18
925 1014 2.635427 GCATAAACCCTAGCTAGGCTCT 59.365 50.000 31.33 19.47 42.26 4.09
926 1015 3.306433 GCATAAACCCTAGCTAGGCTCTC 60.306 52.174 31.33 13.36 42.26 3.20
937 1026 1.007238 TAGGCTCTCCATCCCCTCCT 61.007 60.000 0.00 0.00 33.74 3.69
1090 1189 2.167861 CGAGCGGCCTTCAAGCTAC 61.168 63.158 0.00 0.00 41.84 3.58
1479 1579 2.158900 CGCCTTCATCACCAAGGTATCT 60.159 50.000 0.00 0.00 42.35 1.98
1488 1588 0.031721 CCAAGGTATCTACGCGGTCC 59.968 60.000 12.47 3.19 0.00 4.46
1518 1622 2.188469 GGCCCGCTGAATCCGTTA 59.812 61.111 0.00 0.00 0.00 3.18
1533 1639 8.006298 TGAATCCGTTATGAAAAATAGCCATT 57.994 30.769 0.00 0.00 0.00 3.16
1538 1644 7.771361 TCCGTTATGAAAAATAGCCATTGACTA 59.229 33.333 0.00 0.00 0.00 2.59
1549 1655 8.757982 AATAGCCATTGACTACAAATGATTCT 57.242 30.769 0.00 0.00 39.54 2.40
1555 1661 8.464404 CCATTGACTACAAATGATTCTTGATGT 58.536 33.333 0.00 0.00 39.54 3.06
1573 1679 0.668535 GTTGTTCCCCTGTGTGAAGC 59.331 55.000 0.00 0.00 0.00 3.86
1591 1697 5.064707 GTGAAGCGCACCTATTAAAATCAGA 59.935 40.000 11.47 0.00 41.78 3.27
1599 1705 9.599322 CGCACCTATTAAAATCAGATGTATTTC 57.401 33.333 0.00 0.00 0.00 2.17
1627 1733 2.398588 TGTCAACAGGTCTTCAGGTCT 58.601 47.619 0.00 0.00 0.00 3.85
1694 1800 4.193090 TGAACGCAGGTTTTCTTCAAGTA 58.807 39.130 0.00 0.00 36.24 2.24
1701 1828 7.012989 ACGCAGGTTTTCTTCAAGTACTTTATT 59.987 33.333 5.07 0.00 0.00 1.40
1729 1861 1.795768 AGTAGTGTGTTGACGCATGG 58.204 50.000 0.25 0.00 38.74 3.66
1868 2000 4.322567 AGATTGCTCCAGAACTTCTTGAC 58.677 43.478 0.00 0.00 0.00 3.18
1895 2027 0.531311 ACCTGTTCAACGTCGAACCC 60.531 55.000 16.36 0.00 43.84 4.11
1940 2072 8.559536 TGAAACATTTGTCAGAGTTACTCAATC 58.440 33.333 15.23 4.70 32.06 2.67
1941 2073 6.712241 ACATTTGTCAGAGTTACTCAATCG 57.288 37.500 15.23 0.36 32.06 3.34
1942 2074 6.455647 ACATTTGTCAGAGTTACTCAATCGA 58.544 36.000 15.23 2.76 32.06 3.59
1948 2081 7.030165 TGTCAGAGTTACTCAATCGATTTCTC 58.970 38.462 15.23 9.33 32.06 2.87
1953 2086 9.495572 AGAGTTACTCAATCGATTTCTCTTTTT 57.504 29.630 15.23 0.00 32.06 1.94
1970 2103 6.377146 TCTCTTTTTAATGTGTTAGCATCCCC 59.623 38.462 0.00 0.00 0.00 4.81
2159 2293 4.757149 GGAATGAGGGTCATGCTACAATAC 59.243 45.833 0.00 0.00 37.15 1.89
2164 2298 6.582636 TGAGGGTCATGCTACAATACTTTAG 58.417 40.000 0.00 0.00 0.00 1.85
2497 2638 3.647824 GCAGTCAGCCACAGTGTC 58.352 61.111 0.00 0.00 37.23 3.67
2522 2663 8.587608 TCATTTCTTGAAACTAATTGATGCCTT 58.412 29.630 0.00 0.00 0.00 4.35
2607 2748 8.831550 CCTGATAACTTTCCTCTTTTATGCTAC 58.168 37.037 0.00 0.00 0.00 3.58
2669 2810 6.068010 TGAACATCTGGTCCTTTGTATTGTT 58.932 36.000 0.00 0.00 0.00 2.83
2802 2943 5.954150 AGTTGGTCAGGCATCAGATTTTATT 59.046 36.000 0.00 0.00 0.00 1.40
3181 3322 2.637947 GAGAGGTGCCTTTCAATCTCC 58.362 52.381 4.14 0.00 35.40 3.71
3182 3323 2.238395 GAGAGGTGCCTTTCAATCTCCT 59.762 50.000 4.14 0.00 35.40 3.69
3183 3324 2.238395 AGAGGTGCCTTTCAATCTCCTC 59.762 50.000 0.00 0.00 39.50 3.71
3184 3325 2.238395 GAGGTGCCTTTCAATCTCCTCT 59.762 50.000 0.00 0.00 37.46 3.69
3185 3326 2.238395 AGGTGCCTTTCAATCTCCTCTC 59.762 50.000 0.00 0.00 0.00 3.20
3194 3335 7.334090 CCTTTCAATCTCCTCTCATGAAACTA 58.666 38.462 0.00 0.00 35.67 2.24
3592 3735 5.454755 GGCTATCAAGGTATCCTGCTGTTTA 60.455 44.000 0.00 0.00 32.13 2.01
3682 3825 9.936759 AAGAGTTTTTCTTCTAAGTCATCTAGG 57.063 33.333 0.00 0.00 42.54 3.02
3763 3906 4.157246 TCTCAAGTTACTGTCCCAGCTTA 58.843 43.478 0.00 0.00 34.37 3.09
3799 3942 3.250040 GCTTTTACATGTCCACGTTGTCT 59.750 43.478 0.00 0.00 0.00 3.41
3896 4040 1.221840 GCGGAAGATGGCTCTGGAA 59.778 57.895 0.00 0.00 0.00 3.53
4000 4144 4.537751 TCAGACACCCACACCAAAAATAA 58.462 39.130 0.00 0.00 0.00 1.40
4001 4145 5.144100 TCAGACACCCACACCAAAAATAAT 58.856 37.500 0.00 0.00 0.00 1.28
4002 4146 6.307776 TCAGACACCCACACCAAAAATAATA 58.692 36.000 0.00 0.00 0.00 0.98
4003 4147 6.207810 TCAGACACCCACACCAAAAATAATAC 59.792 38.462 0.00 0.00 0.00 1.89
4004 4148 6.208599 CAGACACCCACACCAAAAATAATACT 59.791 38.462 0.00 0.00 0.00 2.12
4005 4149 6.433093 AGACACCCACACCAAAAATAATACTC 59.567 38.462 0.00 0.00 0.00 2.59
4006 4150 5.479027 ACACCCACACCAAAAATAATACTCC 59.521 40.000 0.00 0.00 0.00 3.85
4007 4151 5.020795 ACCCACACCAAAAATAATACTCCC 58.979 41.667 0.00 0.00 0.00 4.30
4008 4152 5.222463 ACCCACACCAAAAATAATACTCCCT 60.222 40.000 0.00 0.00 0.00 4.20
4009 4153 5.359860 CCCACACCAAAAATAATACTCCCTC 59.640 44.000 0.00 0.00 0.00 4.30
4010 4154 5.359860 CCACACCAAAAATAATACTCCCTCC 59.640 44.000 0.00 0.00 0.00 4.30
4011 4155 5.065988 CACACCAAAAATAATACTCCCTCCG 59.934 44.000 0.00 0.00 0.00 4.63
4012 4156 5.045432 ACACCAAAAATAATACTCCCTCCGA 60.045 40.000 0.00 0.00 0.00 4.55
4013 4157 6.062095 CACCAAAAATAATACTCCCTCCGAT 58.938 40.000 0.00 0.00 0.00 4.18
4014 4158 6.204882 CACCAAAAATAATACTCCCTCCGATC 59.795 42.308 0.00 0.00 0.00 3.69
4015 4159 5.705905 CCAAAAATAATACTCCCTCCGATCC 59.294 44.000 0.00 0.00 0.00 3.36
4016 4160 6.296026 CAAAAATAATACTCCCTCCGATCCA 58.704 40.000 0.00 0.00 0.00 3.41
4017 4161 6.704056 AAAATAATACTCCCTCCGATCCAT 57.296 37.500 0.00 0.00 0.00 3.41
4018 4162 7.808279 AAAATAATACTCCCTCCGATCCATA 57.192 36.000 0.00 0.00 0.00 2.74
4048 4211 5.536538 TGTAGCTCAGTCGGATGATTTAGAT 59.463 40.000 0.00 0.00 0.00 1.98
4057 4220 7.657354 CAGTCGGATGATTTAGATGTATTCCAA 59.343 37.037 0.00 0.00 0.00 3.53
4071 4234 9.044646 AGATGTATTCCAATGCTAGATACATCT 57.955 33.333 22.86 22.86 46.92 2.90
4099 4262 5.463392 TGAGCGACAAGTAATATGAATCAGC 59.537 40.000 0.00 0.00 0.00 4.26
4190 4353 7.404203 AGACACATAACACAACGTCTTTTTAC 58.596 34.615 0.00 0.00 29.68 2.01
4318 4481 7.871973 AGAATCAATACTGATGCTGATACAGAC 59.128 37.037 0.00 0.00 45.10 3.51
4381 4544 1.067635 CCTCGCCTTTGAAACCCATTG 60.068 52.381 0.00 0.00 0.00 2.82
4417 4580 3.119708 GCCAATGGACTCAACTTGATGAC 60.120 47.826 2.05 0.00 0.00 3.06
4467 4630 4.587056 GGGGGTGAAGATGATGGC 57.413 61.111 0.00 0.00 0.00 4.40
4494 4657 1.886542 GTTGACATGGACCAAGGTTCC 59.113 52.381 0.00 0.00 0.00 3.62
4656 4819 5.146010 ACAGTGAGGATGAAAGAGAGAAC 57.854 43.478 0.00 0.00 0.00 3.01
4726 4889 1.639298 GGCTAAAGCACAGCTGGACG 61.639 60.000 19.93 7.19 44.36 4.79
4848 5011 1.420702 CTCGGACGAGTCAGACGAC 59.579 63.158 13.23 0.00 42.95 4.34
4950 5113 1.144716 GCAGATCCTGGATGACGCA 59.855 57.895 15.25 0.00 31.21 5.24
5391 5554 2.531942 AAGAAGGGCGGGAAGGGT 60.532 61.111 0.00 0.00 0.00 4.34
5392 5555 2.907179 AAGAAGGGCGGGAAGGGTG 61.907 63.158 0.00 0.00 0.00 4.61
5393 5556 4.426313 GAAGGGCGGGAAGGGTGG 62.426 72.222 0.00 0.00 0.00 4.61
5397 5560 4.986708 GGCGGGAAGGGTGGCAAA 62.987 66.667 0.00 0.00 0.00 3.68
5423 5586 2.044946 CAAGGGGAAGAAGGGCGG 60.045 66.667 0.00 0.00 0.00 6.13
5525 5691 1.493772 CCGCGTTGAGTAGTTTGACA 58.506 50.000 4.92 0.00 0.00 3.58
5526 5692 1.455786 CCGCGTTGAGTAGTTTGACAG 59.544 52.381 4.92 0.00 0.00 3.51
5548 5714 0.948141 GGCGTATGGATGAGCAGCTC 60.948 60.000 16.21 16.21 0.00 4.09
5620 5786 1.000843 GCCGAAATTTTTGCCTGTCCT 59.999 47.619 0.00 0.00 0.00 3.85
5688 5857 2.554142 TGAGAGCTGTTTCAGTGTGTG 58.446 47.619 0.00 0.00 33.43 3.82
5743 5914 6.866248 GGACGATTTGTGGACAATAATTTGTT 59.134 34.615 0.00 0.00 46.01 2.83
5746 5917 9.567848 ACGATTTGTGGACAATAATTTGTTATC 57.432 29.630 0.00 0.00 46.01 1.75
5752 5923 6.745450 GTGGACAATAATTTGTTATCGTGGTG 59.255 38.462 0.00 0.00 46.01 4.17
5756 5927 8.736751 ACAATAATTTGTTATCGTGGTGAAAC 57.263 30.769 0.00 0.00 43.57 2.78
5778 5949 4.352001 ACCCTGGCAGTATCATAATCATGT 59.648 41.667 14.43 0.00 33.57 3.21
5787 5958 8.642885 GCAGTATCATAATCATGTCGAACTTAG 58.357 37.037 0.00 0.00 33.57 2.18
5814 5986 2.012673 CTTGCTAGCTTTGTGGCCTAG 58.987 52.381 17.23 0.00 0.00 3.02
5853 6025 3.287867 AATGAAGCTAGGACACATGGG 57.712 47.619 0.00 0.00 0.00 4.00
5976 6190 2.330372 GGGGTCGCCGTTTCCTTTC 61.330 63.158 0.00 0.00 0.00 2.62
5995 6209 4.911514 TTCCGGGTGAAAAGAAAGAAAG 57.088 40.909 0.00 0.00 0.00 2.62
5996 6210 4.159244 TCCGGGTGAAAAGAAAGAAAGA 57.841 40.909 0.00 0.00 0.00 2.52
5997 6211 4.528920 TCCGGGTGAAAAGAAAGAAAGAA 58.471 39.130 0.00 0.00 0.00 2.52
6007 6221 9.860898 TGAAAAGAAAGAAAGAAGAAAAAGGAG 57.139 29.630 0.00 0.00 0.00 3.69
6061 6275 0.249911 CTGGATTCCGATTCCCGTCC 60.250 60.000 6.83 0.00 36.31 4.79
6064 6278 1.384082 ATTCCGATTCCCGTCCCCT 60.384 57.895 0.00 0.00 36.31 4.79
6065 6279 0.105349 ATTCCGATTCCCGTCCCCTA 60.105 55.000 0.00 0.00 36.31 3.53
6067 6284 2.505167 CCGATTCCCGTCCCCTACC 61.505 68.421 0.00 0.00 36.31 3.18
6073 6290 2.666098 CCCGTCCCCTACCACTTGG 61.666 68.421 0.00 0.00 42.17 3.61
6074 6291 2.267961 CGTCCCCTACCACTTGGC 59.732 66.667 0.00 0.00 39.32 4.52
6075 6292 2.675371 GTCCCCTACCACTTGGCC 59.325 66.667 0.00 0.00 39.32 5.36
6076 6293 3.006728 TCCCCTACCACTTGGCCG 61.007 66.667 0.00 0.00 39.32 6.13
6078 6295 4.109675 CCCTACCACTTGGCCGGG 62.110 72.222 2.18 7.81 40.26 5.73
6080 6297 3.327404 CTACCACTTGGCCGGGGT 61.327 66.667 9.74 9.74 39.32 4.95
6081 6298 2.855014 TACCACTTGGCCGGGGTT 60.855 61.111 10.12 0.00 39.32 4.11
6096 6313 1.153249 GGTTGCGAATCCGGATCCA 60.153 57.895 19.43 12.58 42.96 3.41
6098 6315 0.657840 GTTGCGAATCCGGATCCAAG 59.342 55.000 19.43 10.47 35.67 3.61
6100 6317 0.758734 TGCGAATCCGGATCCAAGAT 59.241 50.000 19.43 10.46 36.06 2.40
6101 6318 1.140852 TGCGAATCCGGATCCAAGATT 59.859 47.619 19.43 21.42 36.06 2.40
6104 6321 3.813166 GCGAATCCGGATCCAAGATTTTA 59.187 43.478 19.43 0.00 36.06 1.52
6105 6322 4.274950 GCGAATCCGGATCCAAGATTTTAA 59.725 41.667 19.43 0.00 36.06 1.52
6108 6325 3.551846 TCCGGATCCAAGATTTTAAGGC 58.448 45.455 13.41 0.00 0.00 4.35
6115 6332 4.746466 TCCAAGATTTTAAGGCCTCCAAA 58.254 39.130 5.23 8.92 0.00 3.28
6116 6333 4.772100 TCCAAGATTTTAAGGCCTCCAAAG 59.228 41.667 5.23 0.00 0.00 2.77
6120 6337 7.256154 CCAAGATTTTAAGGCCTCCAAAGTTTA 60.256 37.037 5.23 0.00 0.00 2.01
6121 6338 7.849322 AGATTTTAAGGCCTCCAAAGTTTAA 57.151 32.000 5.23 0.00 0.00 1.52
6122 6339 7.896811 AGATTTTAAGGCCTCCAAAGTTTAAG 58.103 34.615 5.23 0.00 0.00 1.85
6123 6340 6.413783 TTTTAAGGCCTCCAAAGTTTAAGG 57.586 37.500 5.23 10.53 0.00 2.69
6126 6343 1.924731 GCCTCCAAAGTTTAAGGCCT 58.075 50.000 22.25 0.00 46.97 5.19
6127 6344 1.819288 GCCTCCAAAGTTTAAGGCCTC 59.181 52.381 22.25 0.00 46.97 4.70
6128 6345 2.555448 GCCTCCAAAGTTTAAGGCCTCT 60.555 50.000 22.25 0.00 46.97 3.69
6129 6346 3.767711 CCTCCAAAGTTTAAGGCCTCTT 58.232 45.455 5.23 1.18 37.03 2.85
6130 6347 4.152647 CCTCCAAAGTTTAAGGCCTCTTT 58.847 43.478 5.23 8.71 34.59 2.52
6131 6348 4.021981 CCTCCAAAGTTTAAGGCCTCTTTG 60.022 45.833 26.63 26.63 43.30 2.77
6133 6350 4.937201 CAAAGTTTAAGGCCTCTTTGGT 57.063 40.909 26.19 7.11 41.36 3.67
6134 6351 5.276461 CAAAGTTTAAGGCCTCTTTGGTT 57.724 39.130 26.19 9.09 41.36 3.67
6135 6352 5.670485 CAAAGTTTAAGGCCTCTTTGGTTT 58.330 37.500 26.19 12.69 41.36 3.27
6136 6353 6.811954 CAAAGTTTAAGGCCTCTTTGGTTTA 58.188 36.000 26.19 4.86 41.36 2.01
6137 6354 6.650427 AAGTTTAAGGCCTCTTTGGTTTAG 57.350 37.500 5.23 0.00 38.35 1.85
6138 6355 5.948842 AGTTTAAGGCCTCTTTGGTTTAGA 58.051 37.500 5.23 0.00 38.35 2.10
6151 6368 8.404107 TCTTTGGTTTAGAGGAATTTTGTAGG 57.596 34.615 0.00 0.00 0.00 3.18
6152 6369 8.221944 TCTTTGGTTTAGAGGAATTTTGTAGGA 58.778 33.333 0.00 0.00 0.00 2.94
6153 6370 8.770010 TTTGGTTTAGAGGAATTTTGTAGGAA 57.230 30.769 0.00 0.00 0.00 3.36
6154 6371 8.950007 TTGGTTTAGAGGAATTTTGTAGGAAT 57.050 30.769 0.00 0.00 0.00 3.01
6155 6372 8.950007 TGGTTTAGAGGAATTTTGTAGGAATT 57.050 30.769 0.00 0.00 0.00 2.17
6156 6373 9.374711 TGGTTTAGAGGAATTTTGTAGGAATTT 57.625 29.630 0.00 0.00 0.00 1.82
6157 6374 9.856488 GGTTTAGAGGAATTTTGTAGGAATTTC 57.144 33.333 0.00 0.00 0.00 2.17
6162 6379 9.413734 AGAGGAATTTTGTAGGAATTTCATAGG 57.586 33.333 0.00 0.00 0.00 2.57
6163 6380 9.408648 GAGGAATTTTGTAGGAATTTCATAGGA 57.591 33.333 0.00 0.00 0.00 2.94
6164 6381 9.942526 AGGAATTTTGTAGGAATTTCATAGGAT 57.057 29.630 0.00 0.00 0.00 3.24
6197 6414 9.628500 TCTATAGAAAAATTTCCTTTAGAGCCC 57.372 33.333 0.00 0.00 37.92 5.19
6198 6415 9.634021 CTATAGAAAAATTTCCTTTAGAGCCCT 57.366 33.333 0.00 0.00 37.92 5.19
6199 6416 8.901472 ATAGAAAAATTTCCTTTAGAGCCCTT 57.099 30.769 2.37 0.00 37.92 3.95
6200 6417 7.618019 AGAAAAATTTCCTTTAGAGCCCTTT 57.382 32.000 2.37 0.00 37.92 3.11
6201 6418 7.445121 AGAAAAATTTCCTTTAGAGCCCTTTG 58.555 34.615 2.37 0.00 37.92 2.77
6202 6419 5.745312 AAATTTCCTTTAGAGCCCTTTGG 57.255 39.130 0.00 0.00 0.00 3.28
6203 6420 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
6204 6421 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
6205 6422 3.895704 TCCTTTAGAGCCCTTTGGTTT 57.104 42.857 0.00 0.00 0.00 3.27
6206 6423 3.496331 TCCTTTAGAGCCCTTTGGTTTG 58.504 45.455 0.00 0.00 0.00 2.93
6207 6424 3.117284 TCCTTTAGAGCCCTTTGGTTTGT 60.117 43.478 0.00 0.00 0.00 2.83
6208 6425 4.105057 TCCTTTAGAGCCCTTTGGTTTGTA 59.895 41.667 0.00 0.00 0.00 2.41
6209 6426 4.459337 CCTTTAGAGCCCTTTGGTTTGTAG 59.541 45.833 0.00 0.00 0.00 2.74
6210 6427 2.586648 AGAGCCCTTTGGTTTGTAGG 57.413 50.000 0.00 0.00 0.00 3.18
6211 6428 2.062636 AGAGCCCTTTGGTTTGTAGGA 58.937 47.619 0.00 0.00 0.00 2.94
6212 6429 2.445525 AGAGCCCTTTGGTTTGTAGGAA 59.554 45.455 0.00 0.00 0.00 3.36
6213 6430 3.076032 AGAGCCCTTTGGTTTGTAGGAAT 59.924 43.478 0.00 0.00 0.00 3.01
6214 6431 4.291249 AGAGCCCTTTGGTTTGTAGGAATA 59.709 41.667 0.00 0.00 0.00 1.75
6215 6432 4.600062 AGCCCTTTGGTTTGTAGGAATAG 58.400 43.478 0.00 0.00 0.00 1.73
6216 6433 4.291249 AGCCCTTTGGTTTGTAGGAATAGA 59.709 41.667 0.00 0.00 0.00 1.98
6217 6434 5.014202 GCCCTTTGGTTTGTAGGAATAGAA 58.986 41.667 0.00 0.00 0.00 2.10
6218 6435 5.656859 GCCCTTTGGTTTGTAGGAATAGAAT 59.343 40.000 0.00 0.00 0.00 2.40
6219 6436 6.183360 GCCCTTTGGTTTGTAGGAATAGAATC 60.183 42.308 0.00 0.00 0.00 2.52
6220 6437 6.321435 CCCTTTGGTTTGTAGGAATAGAATCC 59.679 42.308 0.00 0.00 39.96 3.01
6240 6457 9.445973 AGAATCCTATTCCTGTAGAGAAATTCT 57.554 33.333 0.00 0.00 40.06 2.40
6243 6460 8.024145 TCCTATTCCTGTAGAGAAATTCTTCC 57.976 38.462 0.00 0.00 37.36 3.46
6244 6461 7.846823 TCCTATTCCTGTAGAGAAATTCTTCCT 59.153 37.037 0.00 0.00 37.36 3.36
6245 6462 9.148879 CCTATTCCTGTAGAGAAATTCTTCCTA 57.851 37.037 0.00 0.00 37.36 2.94
6248 6465 7.604657 TCCTGTAGAGAAATTCTTCCTATCC 57.395 40.000 0.00 0.00 37.36 2.59
6249 6466 7.366226 TCCTGTAGAGAAATTCTTCCTATCCT 58.634 38.462 0.00 0.00 37.36 3.24
6250 6467 7.507616 TCCTGTAGAGAAATTCTTCCTATCCTC 59.492 40.741 0.00 0.00 37.36 3.71
6251 6468 7.256154 CCTGTAGAGAAATTCTTCCTATCCTCC 60.256 44.444 0.00 0.00 37.36 4.30
6252 6469 7.132805 TGTAGAGAAATTCTTCCTATCCTCCA 58.867 38.462 0.00 0.00 37.36 3.86
6253 6470 6.493189 AGAGAAATTCTTCCTATCCTCCAC 57.507 41.667 0.00 0.00 29.61 4.02
6254 6471 5.966935 AGAGAAATTCTTCCTATCCTCCACA 59.033 40.000 0.00 0.00 29.61 4.17
6255 6472 6.619023 AGAGAAATTCTTCCTATCCTCCACAT 59.381 38.462 0.00 0.00 29.61 3.21
6256 6473 7.128573 AGAGAAATTCTTCCTATCCTCCACATT 59.871 37.037 0.00 0.00 29.61 2.71
6257 6474 7.646884 AGAAATTCTTCCTATCCTCCACATTT 58.353 34.615 0.00 0.00 31.28 2.32
6258 6475 7.777440 AGAAATTCTTCCTATCCTCCACATTTC 59.223 37.037 0.00 0.00 31.28 2.17
6259 6476 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
6260 6477 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
6261 6478 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
6262 6479 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
6263 6480 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
6264 6481 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
6265 6482 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
6266 6483 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
6267 6484 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
6268 6485 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
6271 6488 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
6272 6489 8.966868 TCCTCCACATTTCATAGGAAAATAAAC 58.033 33.333 6.65 0.00 45.52 2.01
6273 6490 8.748412 CCTCCACATTTCATAGGAAAATAAACA 58.252 33.333 6.65 0.00 45.52 2.83
6286 6503 8.966069 AGGAAAATAAACATTAGCCTAGACTC 57.034 34.615 0.00 0.00 0.00 3.36
6287 6504 8.548877 AGGAAAATAAACATTAGCCTAGACTCA 58.451 33.333 0.00 0.00 0.00 3.41
6288 6505 9.174166 GGAAAATAAACATTAGCCTAGACTCAA 57.826 33.333 0.00 0.00 0.00 3.02
6291 6508 8.682936 AATAAACATTAGCCTAGACTCAATGG 57.317 34.615 0.00 0.00 32.20 3.16
6292 6509 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
6293 6510 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
6294 6511 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
6295 6512 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
6296 6513 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
6322 6539 9.803507 AAATCCTATGATATGAATCAAAGAGCA 57.196 29.630 0.00 0.00 45.12 4.26
6323 6540 9.976776 AATCCTATGATATGAATCAAAGAGCAT 57.023 29.630 0.00 0.00 45.12 3.79
6324 6541 9.616156 ATCCTATGATATGAATCAAAGAGCATC 57.384 33.333 0.00 0.00 45.12 3.91
6325 6542 8.823794 TCCTATGATATGAATCAAAGAGCATCT 58.176 33.333 0.00 0.00 46.11 2.90
6344 6561 8.916628 AGCATCTTCTTTTCTATTCCTATTCC 57.083 34.615 0.00 0.00 0.00 3.01
6345 6562 8.722422 AGCATCTTCTTTTCTATTCCTATTCCT 58.278 33.333 0.00 0.00 0.00 3.36
6361 6578 9.635284 TTCCTATTCCTATGATTTTCCTATCCT 57.365 33.333 0.00 0.00 0.00 3.24
6368 6585 8.826765 TCCTATGATTTTCCTATCCTATGAACC 58.173 37.037 0.00 0.00 0.00 3.62
6369 6586 8.605947 CCTATGATTTTCCTATCCTATGAACCA 58.394 37.037 0.00 0.00 0.00 3.67
6370 6587 9.664332 CTATGATTTTCCTATCCTATGAACCAG 57.336 37.037 0.00 0.00 0.00 4.00
6371 6588 6.299141 TGATTTTCCTATCCTATGAACCAGC 58.701 40.000 0.00 0.00 0.00 4.85
6372 6589 4.336889 TTTCCTATCCTATGAACCAGCG 57.663 45.455 0.00 0.00 0.00 5.18
6399 6616 4.201951 GTGACGGCCACATGGTAG 57.798 61.111 2.24 0.00 45.03 3.18
6400 6617 1.449601 GTGACGGCCACATGGTAGG 60.450 63.158 2.24 0.00 45.03 3.18
6401 6618 2.189521 GACGGCCACATGGTAGGG 59.810 66.667 2.24 0.00 37.57 3.53
6402 6619 4.109675 ACGGCCACATGGTAGGGC 62.110 66.667 14.93 14.93 46.99 5.19
6445 6672 2.923020 CAAGCATTTTGGCAACGATACC 59.077 45.455 0.00 0.00 42.51 2.73
6446 6673 2.446435 AGCATTTTGGCAACGATACCT 58.554 42.857 0.00 0.00 42.51 3.08
6447 6674 3.616219 AGCATTTTGGCAACGATACCTA 58.384 40.909 0.00 0.00 42.51 3.08
6469 6696 0.855349 GACTAATGATGGCTCACGCG 59.145 55.000 3.53 3.53 36.88 6.01
6470 6697 0.530650 ACTAATGATGGCTCACGCGG 60.531 55.000 12.47 0.00 36.88 6.46
6490 6717 0.038310 AGCCTAAAAGCACTCCCACC 59.962 55.000 0.00 0.00 34.23 4.61
6500 6727 2.045536 CTCCCACCTTGCTCTGCC 60.046 66.667 0.00 0.00 0.00 4.85
6501 6728 2.530151 TCCCACCTTGCTCTGCCT 60.530 61.111 0.00 0.00 0.00 4.75
6502 6729 2.045536 CCCACCTTGCTCTGCCTC 60.046 66.667 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.181500 GCACCCTGATAAACCAAATCGTC 60.181 47.826 0.00 0.00 0.00 4.20
113 114 2.733227 GCCATGTTGTAATGCTGTGAGC 60.733 50.000 0.00 0.00 42.82 4.26
155 156 6.826668 TCAGAGGAAACAAGTTATCTGACAA 58.173 36.000 15.57 2.33 38.52 3.18
166 167 4.655963 TGGGAGAATTCAGAGGAAACAAG 58.344 43.478 8.44 0.00 36.43 3.16
203 204 9.433153 TCATTGTGCAGCATAAATAAATGAAAA 57.567 25.926 8.83 0.00 31.72 2.29
238 273 7.309438 GGAGCATTCTTGGTTCAGTAAAATTCT 60.309 37.037 0.00 0.00 32.62 2.40
277 313 5.409520 TCAGTCTTTAGTGTTCATGATGCAC 59.590 40.000 17.95 17.95 0.00 4.57
296 332 5.036117 TGGCCAGGTAGATTATTTCAGTC 57.964 43.478 0.00 0.00 0.00 3.51
312 348 2.207501 ATTCAGCACTCCCTGGCCAG 62.208 60.000 26.87 26.87 33.64 4.85
529 575 0.108186 TGAGCTATGCGGTGGTTGAG 60.108 55.000 0.00 0.00 0.00 3.02
686 735 0.110104 GCAATGGAGCTAGGCCTCAT 59.890 55.000 9.68 2.53 33.47 2.90
717 766 3.853355 ATCCCATAGCCACTTTCTCAG 57.147 47.619 0.00 0.00 0.00 3.35
718 767 4.968719 TCTTATCCCATAGCCACTTTCTCA 59.031 41.667 0.00 0.00 0.00 3.27
719 768 5.071115 ACTCTTATCCCATAGCCACTTTCTC 59.929 44.000 0.00 0.00 0.00 2.87
720 769 4.971924 ACTCTTATCCCATAGCCACTTTCT 59.028 41.667 0.00 0.00 0.00 2.52
721 770 5.059833 CACTCTTATCCCATAGCCACTTTC 58.940 45.833 0.00 0.00 0.00 2.62
722 771 4.141390 CCACTCTTATCCCATAGCCACTTT 60.141 45.833 0.00 0.00 0.00 2.66
729 778 5.245075 GTCTCCTTCCACTCTTATCCCATAG 59.755 48.000 0.00 0.00 0.00 2.23
730 779 5.148502 GTCTCCTTCCACTCTTATCCCATA 58.851 45.833 0.00 0.00 0.00 2.74
802 873 1.614824 CCTCTTCAGGTCTGGGCCT 60.615 63.158 4.53 0.00 39.99 5.19
803 874 2.993853 CCTCTTCAGGTCTGGGCC 59.006 66.667 0.00 0.00 34.60 5.80
809 880 2.644676 GTTAATGGGCCTCTTCAGGTC 58.355 52.381 4.53 0.00 44.84 3.85
814 885 3.095922 CCCGTTAATGGGCCTCTTC 57.904 57.895 19.97 0.00 43.70 2.87
891 978 1.302383 TTTATGCCGCGTGGGTTCTG 61.302 55.000 18.41 0.00 38.44 3.02
893 980 1.135939 GTTTATGCCGCGTGGGTTC 59.864 57.895 18.41 0.00 38.44 3.62
901 990 1.608283 CCTAGCTAGGGTTTATGCCGC 60.608 57.143 29.47 0.00 39.86 6.53
925 1014 1.238896 AGGAGGAAGGAGGGGATGGA 61.239 60.000 0.00 0.00 0.00 3.41
926 1015 0.766288 GAGGAGGAAGGAGGGGATGG 60.766 65.000 0.00 0.00 0.00 3.51
937 1026 0.855855 TGGAGGAGGAGGAGGAGGAA 60.856 60.000 0.00 0.00 0.00 3.36
1005 1096 1.746991 CTGCTTCCCCTTCGCCTTC 60.747 63.158 0.00 0.00 0.00 3.46
1518 1622 9.590451 CATTTGTAGTCAATGGCTATTTTTCAT 57.410 29.630 0.00 0.00 33.32 2.57
1533 1639 8.394971 ACAACATCAAGAATCATTTGTAGTCA 57.605 30.769 0.00 0.00 0.00 3.41
1538 1644 6.458210 GGGAACAACATCAAGAATCATTTGT 58.542 36.000 0.00 0.00 0.00 2.83
1549 1655 2.092158 TCACACAGGGGAACAACATCAA 60.092 45.455 0.00 0.00 0.00 2.57
1555 1661 0.817634 CGCTTCACACAGGGGAACAA 60.818 55.000 0.00 0.00 0.00 2.83
1573 1679 9.599322 GAAATACATCTGATTTTAATAGGTGCG 57.401 33.333 0.00 0.00 0.00 5.34
1591 1697 7.721399 ACCTGTTGACAAGAAGAAGAAATACAT 59.279 33.333 0.00 0.00 0.00 2.29
1599 1705 5.118990 TGAAGACCTGTTGACAAGAAGAAG 58.881 41.667 0.00 0.00 0.00 2.85
1627 1733 7.443272 CAGAACATGATAGCATTGTAATCCTGA 59.557 37.037 0.00 0.00 30.68 3.86
1701 1828 6.869388 TGCGTCAACACACTACTATGAAATAA 59.131 34.615 0.00 0.00 0.00 1.40
1708 1835 3.194755 TCCATGCGTCAACACACTACTAT 59.805 43.478 0.00 0.00 0.00 2.12
1729 1861 4.319694 GCTGAAATGCAAATGGGTTTGTTC 60.320 41.667 0.00 0.94 45.14 3.18
1775 1907 1.200716 CCACGACTCGCACTAGGTTTA 59.799 52.381 0.00 0.00 0.00 2.01
1868 2000 3.664276 CGACGTTGAACAGGTGCTTTATG 60.664 47.826 0.00 0.00 0.00 1.90
1895 2027 4.313277 TCAGCATACCATCTTCTTCTCG 57.687 45.455 0.00 0.00 0.00 4.04
1940 2072 8.948853 TGCTAACACATTAAAAAGAGAAATCG 57.051 30.769 0.00 0.00 0.00 3.34
1942 2074 9.860898 GGATGCTAACACATTAAAAAGAGAAAT 57.139 29.630 0.00 0.00 0.00 2.17
1948 2081 6.530019 AGGGGATGCTAACACATTAAAAAG 57.470 37.500 0.00 0.00 0.00 2.27
1953 2086 6.260700 ACATTAGGGGATGCTAACACATTA 57.739 37.500 0.00 0.00 0.00 1.90
1970 2103 8.487176 GCAGAAACCACAAAAATGTAACATTAG 58.513 33.333 0.00 0.00 0.00 1.73
2118 2252 3.342377 TCCCGATGCATTTGTTGAGTA 57.658 42.857 0.00 0.00 0.00 2.59
2159 2293 6.801539 TGAGGCACTGAAATACAACTAAAG 57.198 37.500 0.00 0.00 41.55 1.85
2164 2298 6.109359 AGTCTATGAGGCACTGAAATACAAC 58.891 40.000 0.00 0.00 41.55 3.32
2277 2411 7.719193 CCAGTCAATGTAATACATTCATGGGTA 59.281 37.037 21.47 0.00 44.91 3.69
2297 2431 5.758296 GTCACTGTATGAAAAGTTCCAGTCA 59.242 40.000 0.00 0.00 39.72 3.41
2299 2433 5.760253 CAGTCACTGTATGAAAAGTTCCAGT 59.240 40.000 0.00 0.00 39.72 4.00
2497 2638 8.767478 AAGGCATCAATTAGTTTCAAGAAATG 57.233 30.769 0.00 0.00 32.36 2.32
3480 3623 3.552132 TGCGTGCTTTATCCTGGAATA 57.448 42.857 0.00 0.00 0.00 1.75
3592 3735 7.934120 GGCAAAGTAAGACAGATAGGAATACAT 59.066 37.037 0.00 0.00 0.00 2.29
3682 3825 2.094417 GCTCGCCGAATGATAATAAGGC 59.906 50.000 0.00 0.00 41.03 4.35
3785 3928 0.106708 AGCACAGACAACGTGGACAT 59.893 50.000 0.00 0.00 34.85 3.06
3789 3932 1.009675 GCAAGCACAGACAACGTGG 60.010 57.895 0.00 0.00 34.85 4.94
3799 3942 0.179086 TCACTGAGTTCGCAAGCACA 60.179 50.000 0.00 0.00 35.32 4.57
3896 4040 3.243873 TGAGTCGCTTCATTCTCACTGTT 60.244 43.478 0.00 0.00 32.95 3.16
3912 4056 4.620609 CAGAGTCTTCATGAGTTTGAGTCG 59.379 45.833 0.00 0.78 33.48 4.18
4000 4144 6.093617 AGTAATATGGATCGGAGGGAGTAT 57.906 41.667 0.00 0.00 0.00 2.12
4001 4145 5.531753 AGTAATATGGATCGGAGGGAGTA 57.468 43.478 0.00 0.00 0.00 2.59
4002 4146 4.405756 AGTAATATGGATCGGAGGGAGT 57.594 45.455 0.00 0.00 0.00 3.85
4003 4147 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
4004 4148 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
4005 4149 4.891992 ACAAGTAATATGGATCGGAGGG 57.108 45.455 0.00 0.00 0.00 4.30
4006 4150 5.186021 AGCTACAAGTAATATGGATCGGAGG 59.814 44.000 0.00 0.00 0.00 4.30
4007 4151 6.071896 TGAGCTACAAGTAATATGGATCGGAG 60.072 42.308 0.00 0.00 0.00 4.63
4008 4152 5.773176 TGAGCTACAAGTAATATGGATCGGA 59.227 40.000 0.00 0.00 0.00 4.55
4009 4153 6.025749 TGAGCTACAAGTAATATGGATCGG 57.974 41.667 0.00 0.00 0.00 4.18
4010 4154 6.682746 ACTGAGCTACAAGTAATATGGATCG 58.317 40.000 0.00 0.00 0.00 3.69
4011 4155 6.804295 CGACTGAGCTACAAGTAATATGGATC 59.196 42.308 0.00 0.00 0.00 3.36
4012 4156 6.294787 CCGACTGAGCTACAAGTAATATGGAT 60.295 42.308 0.00 0.00 0.00 3.41
4013 4157 5.009710 CCGACTGAGCTACAAGTAATATGGA 59.990 44.000 0.00 0.00 0.00 3.41
4014 4158 5.009710 TCCGACTGAGCTACAAGTAATATGG 59.990 44.000 0.00 0.00 0.00 2.74
4015 4159 6.073327 TCCGACTGAGCTACAAGTAATATG 57.927 41.667 0.00 0.00 0.00 1.78
4016 4160 6.490381 TCATCCGACTGAGCTACAAGTAATAT 59.510 38.462 0.00 0.00 0.00 1.28
4017 4161 5.826208 TCATCCGACTGAGCTACAAGTAATA 59.174 40.000 0.00 0.00 0.00 0.98
4018 4162 4.645136 TCATCCGACTGAGCTACAAGTAAT 59.355 41.667 0.00 0.00 0.00 1.89
4048 4211 7.966812 ACAGATGTATCTAGCATTGGAATACA 58.033 34.615 0.00 1.90 34.85 2.29
4057 4220 4.987285 CGCTCAAACAGATGTATCTAGCAT 59.013 41.667 11.84 0.00 34.68 3.79
4071 4234 7.333174 TGATTCATATTACTTGTCGCTCAAACA 59.667 33.333 0.00 0.00 35.48 2.83
4152 4315 9.295825 TGTGTTATGTGTCTCTGGAATTTTTAT 57.704 29.630 0.00 0.00 0.00 1.40
4381 4544 7.112452 AGTCCATTGGCCATTCTATAAAAAC 57.888 36.000 6.09 0.00 0.00 2.43
4390 4553 2.450476 AGTTGAGTCCATTGGCCATTC 58.550 47.619 6.09 0.00 0.00 2.67
4394 4557 1.909700 TCAAGTTGAGTCCATTGGCC 58.090 50.000 0.08 0.00 0.00 5.36
4467 4630 0.729116 GGTCCATGTCAACATCGCTG 59.271 55.000 0.00 0.00 33.61 5.18
4494 4657 3.068024 CCTCTTGATCTTCCTCTTCCTCG 59.932 52.174 0.00 0.00 0.00 4.63
4563 4726 3.467803 GAACCACTGCTTTGTAGTCTGT 58.532 45.455 0.00 0.00 0.00 3.41
4656 4819 4.789784 TCTTTTTCAAATTCTTACGCGGG 58.210 39.130 12.47 0.00 0.00 6.13
4726 4889 1.807142 CGGTTTCTCCTTCTTTCCTGC 59.193 52.381 0.00 0.00 0.00 4.85
4848 5011 2.495084 TCCATGTCCTCGTCTAGATCG 58.505 52.381 0.00 1.93 0.00 3.69
4849 5012 4.075682 TCATCCATGTCCTCGTCTAGATC 58.924 47.826 0.00 0.00 0.00 2.75
4850 5013 3.823873 GTCATCCATGTCCTCGTCTAGAT 59.176 47.826 0.00 0.00 0.00 1.98
4950 5113 6.346279 CGTCGTCAAACATGTACTTGTTGTAT 60.346 38.462 23.31 9.10 39.68 2.29
5502 5668 2.108278 AAACTACTCAACGCGGCCCT 62.108 55.000 12.47 0.00 0.00 5.19
5525 5691 0.760567 TGCTCATCCATACGCCTCCT 60.761 55.000 0.00 0.00 0.00 3.69
5526 5692 0.320247 CTGCTCATCCATACGCCTCC 60.320 60.000 0.00 0.00 0.00 4.30
5642 5808 4.094294 GCATCAACGTATTACAGCTCCAAA 59.906 41.667 0.00 0.00 0.00 3.28
5644 5810 3.118775 AGCATCAACGTATTACAGCTCCA 60.119 43.478 0.00 0.00 0.00 3.86
5645 5811 3.458189 AGCATCAACGTATTACAGCTCC 58.542 45.455 0.00 0.00 0.00 4.70
5646 5812 5.920840 TCATAGCATCAACGTATTACAGCTC 59.079 40.000 0.00 0.00 32.70 4.09
5648 5814 5.920840 TCTCATAGCATCAACGTATTACAGC 59.079 40.000 0.00 0.00 0.00 4.40
5649 5815 7.559835 CTCTCATAGCATCAACGTATTACAG 57.440 40.000 0.00 0.00 0.00 2.74
5684 5853 7.045160 GCGTAACTTACAAAACTTTTCTCACAC 60.045 37.037 0.00 0.00 0.00 3.82
5688 5857 7.695201 ACAAGCGTAACTTACAAAACTTTTCTC 59.305 33.333 0.00 0.00 36.04 2.87
5743 5914 0.035820 GCCAGGGTTTCACCACGATA 60.036 55.000 0.00 0.00 41.02 2.92
5746 5917 2.203280 TGCCAGGGTTTCACCACG 60.203 61.111 0.00 0.00 41.02 4.94
5752 5923 5.376625 TGATTATGATACTGCCAGGGTTTC 58.623 41.667 0.00 0.00 0.00 2.78
5756 5927 4.914983 ACATGATTATGATACTGCCAGGG 58.085 43.478 4.20 0.00 37.73 4.45
5761 5932 7.413475 AAGTTCGACATGATTATGATACTGC 57.587 36.000 4.20 0.00 37.73 4.40
5778 5949 5.347907 GCTAGCAAGTTTAAGCTAAGTTCGA 59.652 40.000 10.63 0.00 42.27 3.71
5787 5958 4.229876 CCACAAAGCTAGCAAGTTTAAGC 58.770 43.478 18.83 0.00 35.16 3.09
5814 5986 7.379797 GCTTCATTTTTGGTCTCTGTTTTCTAC 59.620 37.037 0.00 0.00 0.00 2.59
5871 6074 6.128445 CGAGTTAACTGAGACAATTGCATTCT 60.128 38.462 14.14 0.53 0.00 2.40
5976 6190 4.578928 TCTTCTTTCTTTCTTTTCACCCGG 59.421 41.667 0.00 0.00 0.00 5.73
5995 6209 4.584743 TCAAAGCTTCCCTCCTTTTTCTTC 59.415 41.667 0.00 0.00 0.00 2.87
5996 6210 4.546674 TCAAAGCTTCCCTCCTTTTTCTT 58.453 39.130 0.00 0.00 0.00 2.52
5997 6211 4.184649 TCAAAGCTTCCCTCCTTTTTCT 57.815 40.909 0.00 0.00 0.00 2.52
6061 6275 4.109675 CCCGGCCAAGTGGTAGGG 62.110 72.222 14.89 14.89 43.61 3.53
6064 6278 2.855014 AACCCCGGCCAAGTGGTA 60.855 61.111 2.24 0.00 37.57 3.25
6065 6279 4.596585 CAACCCCGGCCAAGTGGT 62.597 66.667 2.24 0.00 37.57 4.16
6075 6292 3.750373 ATCCGGATTCGCAACCCCG 62.750 63.158 12.38 0.00 41.47 5.73
6076 6293 1.892391 GATCCGGATTCGCAACCCC 60.892 63.158 20.22 0.00 34.56 4.95
6078 6295 0.746563 TTGGATCCGGATTCGCAACC 60.747 55.000 20.22 14.36 34.56 3.77
6080 6297 0.539518 TCTTGGATCCGGATTCGCAA 59.460 50.000 20.22 6.87 34.56 4.85
6081 6298 0.758734 ATCTTGGATCCGGATTCGCA 59.241 50.000 20.22 6.32 34.56 5.10
6096 6313 6.747414 AAACTTTGGAGGCCTTAAAATCTT 57.253 33.333 6.77 4.61 0.00 2.40
6098 6315 7.097192 CCTTAAACTTTGGAGGCCTTAAAATC 58.903 38.462 6.77 0.00 0.00 2.17
6100 6317 6.413783 CCTTAAACTTTGGAGGCCTTAAAA 57.586 37.500 6.77 10.20 0.00 1.52
6108 6325 3.441500 AGAGGCCTTAAACTTTGGAGG 57.558 47.619 6.77 2.76 0.00 4.30
6115 6332 5.948842 TCTAAACCAAAGAGGCCTTAAACT 58.051 37.500 6.77 0.00 43.14 2.66
6116 6333 6.255596 CTCTAAACCAAAGAGGCCTTAAAC 57.744 41.667 6.77 0.00 43.14 2.01
6126 6343 8.221944 TCCTACAAAATTCCTCTAAACCAAAGA 58.778 33.333 0.00 0.00 0.00 2.52
6127 6344 8.404107 TCCTACAAAATTCCTCTAAACCAAAG 57.596 34.615 0.00 0.00 0.00 2.77
6128 6345 8.770010 TTCCTACAAAATTCCTCTAAACCAAA 57.230 30.769 0.00 0.00 0.00 3.28
6129 6346 8.950007 ATTCCTACAAAATTCCTCTAAACCAA 57.050 30.769 0.00 0.00 0.00 3.67
6130 6347 8.950007 AATTCCTACAAAATTCCTCTAAACCA 57.050 30.769 0.00 0.00 0.00 3.67
6131 6348 9.856488 GAAATTCCTACAAAATTCCTCTAAACC 57.144 33.333 0.00 0.00 0.00 3.27
6136 6353 9.413734 CCTATGAAATTCCTACAAAATTCCTCT 57.586 33.333 0.00 0.00 0.00 3.69
6137 6354 9.408648 TCCTATGAAATTCCTACAAAATTCCTC 57.591 33.333 0.00 0.00 0.00 3.71
6138 6355 9.942526 ATCCTATGAAATTCCTACAAAATTCCT 57.057 29.630 0.00 0.00 0.00 3.36
6171 6388 9.628500 GGGCTCTAAAGGAAATTTTTCTATAGA 57.372 33.333 0.00 0.00 37.35 1.98
6172 6389 9.634021 AGGGCTCTAAAGGAAATTTTTCTATAG 57.366 33.333 0.00 0.00 37.35 1.31
6173 6390 9.990868 AAGGGCTCTAAAGGAAATTTTTCTATA 57.009 29.630 0.00 0.00 37.35 1.31
6174 6391 8.901472 AAGGGCTCTAAAGGAAATTTTTCTAT 57.099 30.769 0.00 0.00 37.35 1.98
6175 6392 8.585018 CAAAGGGCTCTAAAGGAAATTTTTCTA 58.415 33.333 0.00 0.00 37.35 2.10
6176 6393 7.445121 CAAAGGGCTCTAAAGGAAATTTTTCT 58.555 34.615 0.00 0.00 37.35 2.52
6177 6394 6.650807 CCAAAGGGCTCTAAAGGAAATTTTTC 59.349 38.462 0.00 0.00 36.46 2.29
6178 6395 6.101150 ACCAAAGGGCTCTAAAGGAAATTTTT 59.899 34.615 5.94 0.00 37.90 1.94
6179 6396 5.606749 ACCAAAGGGCTCTAAAGGAAATTTT 59.393 36.000 5.94 0.00 37.90 1.82
6180 6397 5.155161 ACCAAAGGGCTCTAAAGGAAATTT 58.845 37.500 5.94 0.00 37.90 1.82
6181 6398 4.752063 ACCAAAGGGCTCTAAAGGAAATT 58.248 39.130 5.94 0.00 37.90 1.82
6182 6399 4.404185 ACCAAAGGGCTCTAAAGGAAAT 57.596 40.909 5.94 0.00 37.90 2.17
6183 6400 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
6184 6401 3.895041 CAAACCAAAGGGCTCTAAAGGAA 59.105 43.478 5.94 0.00 37.90 3.36
6185 6402 3.117284 ACAAACCAAAGGGCTCTAAAGGA 60.117 43.478 5.94 0.00 37.90 3.36
6186 6403 3.230976 ACAAACCAAAGGGCTCTAAAGG 58.769 45.455 0.00 0.00 37.90 3.11
6187 6404 4.459337 CCTACAAACCAAAGGGCTCTAAAG 59.541 45.833 0.00 0.00 37.90 1.85
6188 6405 4.105057 TCCTACAAACCAAAGGGCTCTAAA 59.895 41.667 0.00 0.00 37.90 1.85
6189 6406 3.653836 TCCTACAAACCAAAGGGCTCTAA 59.346 43.478 0.00 0.00 37.90 2.10
6190 6407 3.253220 TCCTACAAACCAAAGGGCTCTA 58.747 45.455 0.00 0.00 37.90 2.43
6191 6408 2.062636 TCCTACAAACCAAAGGGCTCT 58.937 47.619 0.00 0.00 37.90 4.09
6192 6409 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
6193 6410 3.542969 ATTCCTACAAACCAAAGGGCT 57.457 42.857 0.00 0.00 37.90 5.19
6194 6411 4.595986 TCTATTCCTACAAACCAAAGGGC 58.404 43.478 0.00 0.00 37.90 5.19
6195 6412 6.321435 GGATTCTATTCCTACAAACCAAAGGG 59.679 42.308 0.00 0.00 34.84 3.95
6196 6413 7.119387 AGGATTCTATTCCTACAAACCAAAGG 58.881 38.462 0.00 0.00 44.50 3.11
6214 6431 9.445973 AGAATTTCTCTACAGGAATAGGATTCT 57.554 33.333 0.00 0.00 30.22 2.40
6217 6434 8.655901 GGAAGAATTTCTCTACAGGAATAGGAT 58.344 37.037 0.00 0.00 32.46 3.24
6218 6435 7.846823 AGGAAGAATTTCTCTACAGGAATAGGA 59.153 37.037 0.00 0.00 32.46 2.94
6219 6436 8.028652 AGGAAGAATTTCTCTACAGGAATAGG 57.971 38.462 0.00 0.00 32.46 2.57
6222 6439 8.655901 GGATAGGAAGAATTTCTCTACAGGAAT 58.344 37.037 0.00 0.00 32.46 3.01
6223 6440 7.846823 AGGATAGGAAGAATTTCTCTACAGGAA 59.153 37.037 0.00 0.00 32.46 3.36
6224 6441 7.366226 AGGATAGGAAGAATTTCTCTACAGGA 58.634 38.462 0.00 0.00 32.46 3.86
6225 6442 7.256154 GGAGGATAGGAAGAATTTCTCTACAGG 60.256 44.444 0.00 0.00 32.46 4.00
6226 6443 7.288852 TGGAGGATAGGAAGAATTTCTCTACAG 59.711 40.741 0.00 0.00 32.46 2.74
6227 6444 7.070074 GTGGAGGATAGGAAGAATTTCTCTACA 59.930 40.741 0.00 0.00 33.63 2.74
6228 6445 7.070074 TGTGGAGGATAGGAAGAATTTCTCTAC 59.930 40.741 0.00 0.00 32.46 2.59
6229 6446 7.132805 TGTGGAGGATAGGAAGAATTTCTCTA 58.867 38.462 0.00 0.00 32.46 2.43
6230 6447 5.966935 TGTGGAGGATAGGAAGAATTTCTCT 59.033 40.000 0.00 0.00 35.13 3.10
6231 6448 6.240549 TGTGGAGGATAGGAAGAATTTCTC 57.759 41.667 0.00 0.00 33.68 2.87
6232 6449 6.838401 ATGTGGAGGATAGGAAGAATTTCT 57.162 37.500 0.00 0.00 33.68 2.52
6233 6450 7.557719 TGAAATGTGGAGGATAGGAAGAATTTC 59.442 37.037 0.00 0.00 33.19 2.17
6234 6451 7.413446 TGAAATGTGGAGGATAGGAAGAATTT 58.587 34.615 0.00 0.00 0.00 1.82
6235 6452 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
6236 6453 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
6237 6454 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
6238 6455 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
6239 6456 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
6240 6457 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
6241 6458 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
6242 6459 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
6243 6460 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
6245 6462 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
6246 6463 8.966868 GTTTATTTTCCTATGAAATGTGGAGGA 58.033 33.333 0.00 0.00 40.08 3.71
6247 6464 8.748412 TGTTTATTTTCCTATGAAATGTGGAGG 58.252 33.333 0.00 0.00 40.08 4.30
6261 6478 8.548877 TGAGTCTAGGCTAATGTTTATTTTCCT 58.451 33.333 0.00 0.00 33.86 3.36
6262 6479 8.732746 TGAGTCTAGGCTAATGTTTATTTTCC 57.267 34.615 0.00 0.00 0.00 3.13
6265 6482 9.125026 CCATTGAGTCTAGGCTAATGTTTATTT 57.875 33.333 17.62 0.00 0.00 1.40
6266 6483 8.494433 TCCATTGAGTCTAGGCTAATGTTTATT 58.506 33.333 17.62 0.00 0.00 1.40
6267 6484 8.034313 TCCATTGAGTCTAGGCTAATGTTTAT 57.966 34.615 17.62 0.00 0.00 1.40
6268 6485 7.432148 TCCATTGAGTCTAGGCTAATGTTTA 57.568 36.000 17.62 7.18 0.00 2.01
6269 6486 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
6270 6487 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
6271 6488 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
6272 6489 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
6296 6513 9.803507 TGCTCTTTGATTCATATCATAGGATTT 57.196 29.630 0.00 0.00 40.37 2.17
6297 6514 9.976776 ATGCTCTTTGATTCATATCATAGGATT 57.023 29.630 0.00 0.00 40.37 3.01
6298 6515 9.616156 GATGCTCTTTGATTCATATCATAGGAT 57.384 33.333 0.00 0.00 40.37 3.24
6299 6516 8.823794 AGATGCTCTTTGATTCATATCATAGGA 58.176 33.333 0.00 0.00 40.37 2.94
6300 6517 9.451002 AAGATGCTCTTTGATTCATATCATAGG 57.549 33.333 0.00 0.00 40.37 2.57
6303 6520 9.575868 AAGAAGATGCTCTTTGATTCATATCAT 57.424 29.630 0.86 0.00 40.37 2.45
6304 6521 8.975663 AAGAAGATGCTCTTTGATTCATATCA 57.024 30.769 0.86 0.00 36.73 2.15
6307 6524 9.458727 AGAAAAGAAGATGCTCTTTGATTCATA 57.541 29.630 0.00 0.00 43.33 2.15
6308 6525 8.350852 AGAAAAGAAGATGCTCTTTGATTCAT 57.649 30.769 0.00 0.00 43.33 2.57
6309 6526 7.756395 AGAAAAGAAGATGCTCTTTGATTCA 57.244 32.000 0.00 0.00 43.33 2.57
6312 6529 8.901793 GGAATAGAAAAGAAGATGCTCTTTGAT 58.098 33.333 0.00 0.00 43.33 2.57
6313 6530 8.105829 AGGAATAGAAAAGAAGATGCTCTTTGA 58.894 33.333 0.00 0.00 43.33 2.69
6314 6531 8.278729 AGGAATAGAAAAGAAGATGCTCTTTG 57.721 34.615 0.00 0.00 43.33 2.77
6317 6534 9.777297 GAATAGGAATAGAAAAGAAGATGCTCT 57.223 33.333 0.00 0.00 0.00 4.09
6318 6535 8.998377 GGAATAGGAATAGAAAAGAAGATGCTC 58.002 37.037 0.00 0.00 0.00 4.26
6319 6536 8.722422 AGGAATAGGAATAGAAAAGAAGATGCT 58.278 33.333 0.00 0.00 0.00 3.79
6320 6537 8.916628 AGGAATAGGAATAGAAAAGAAGATGC 57.083 34.615 0.00 0.00 0.00 3.91
6335 6552 9.635284 AGGATAGGAAAATCATAGGAATAGGAA 57.365 33.333 0.00 0.00 0.00 3.36
6342 6559 8.826765 GGTTCATAGGATAGGAAAATCATAGGA 58.173 37.037 0.00 0.00 43.51 2.94
6343 6560 8.605947 TGGTTCATAGGATAGGAAAATCATAGG 58.394 37.037 0.00 0.00 43.51 2.57
6344 6561 9.664332 CTGGTTCATAGGATAGGAAAATCATAG 57.336 37.037 0.00 0.00 43.51 2.23
6345 6562 8.103305 GCTGGTTCATAGGATAGGAAAATCATA 58.897 37.037 0.00 0.00 43.51 2.15
6346 6563 6.944862 GCTGGTTCATAGGATAGGAAAATCAT 59.055 38.462 0.00 0.00 43.51 2.45
6347 6564 6.299141 GCTGGTTCATAGGATAGGAAAATCA 58.701 40.000 0.00 0.00 43.51 2.57
6348 6565 5.409826 CGCTGGTTCATAGGATAGGAAAATC 59.590 44.000 0.00 0.00 43.51 2.17
6349 6566 5.308825 CGCTGGTTCATAGGATAGGAAAAT 58.691 41.667 0.00 0.00 43.51 1.82
6350 6567 4.444306 CCGCTGGTTCATAGGATAGGAAAA 60.444 45.833 0.00 0.00 43.51 2.29
6351 6568 3.071023 CCGCTGGTTCATAGGATAGGAAA 59.929 47.826 0.00 0.00 43.51 3.13
6352 6569 2.632996 CCGCTGGTTCATAGGATAGGAA 59.367 50.000 0.00 0.00 39.27 3.36
6353 6570 2.158370 TCCGCTGGTTCATAGGATAGGA 60.158 50.000 0.00 0.00 0.00 2.94
6354 6571 2.248248 TCCGCTGGTTCATAGGATAGG 58.752 52.381 0.00 0.00 0.00 2.57
6355 6572 3.511540 TCATCCGCTGGTTCATAGGATAG 59.488 47.826 0.00 0.00 39.47 2.08
6356 6573 3.506398 TCATCCGCTGGTTCATAGGATA 58.494 45.455 0.00 0.00 39.47 2.59
6357 6574 2.329267 TCATCCGCTGGTTCATAGGAT 58.671 47.619 0.00 0.00 41.94 3.24
6358 6575 1.788229 TCATCCGCTGGTTCATAGGA 58.212 50.000 0.00 0.00 35.24 2.94
6359 6576 2.224378 ACATCATCCGCTGGTTCATAGG 60.224 50.000 0.00 0.00 0.00 2.57
6360 6577 3.117491 ACATCATCCGCTGGTTCATAG 57.883 47.619 0.00 0.00 0.00 2.23
6361 6578 3.641436 ACTACATCATCCGCTGGTTCATA 59.359 43.478 0.00 0.00 0.00 2.15
6362 6579 2.435805 ACTACATCATCCGCTGGTTCAT 59.564 45.455 0.00 0.00 0.00 2.57
6363 6580 1.831106 ACTACATCATCCGCTGGTTCA 59.169 47.619 0.00 0.00 0.00 3.18
6364 6581 2.159099 TCACTACATCATCCGCTGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
6365 6582 1.831106 TCACTACATCATCCGCTGGTT 59.169 47.619 0.00 0.00 0.00 3.67
6366 6583 1.137086 GTCACTACATCATCCGCTGGT 59.863 52.381 0.00 0.00 0.00 4.00
6367 6584 1.858091 GTCACTACATCATCCGCTGG 58.142 55.000 0.00 0.00 0.00 4.85
6368 6585 1.481240 CGTCACTACATCATCCGCTG 58.519 55.000 0.00 0.00 0.00 5.18
6369 6586 0.385751 CCGTCACTACATCATCCGCT 59.614 55.000 0.00 0.00 0.00 5.52
6370 6587 1.215655 GCCGTCACTACATCATCCGC 61.216 60.000 0.00 0.00 0.00 5.54
6371 6588 0.597637 GGCCGTCACTACATCATCCG 60.598 60.000 0.00 0.00 0.00 4.18
6372 6589 0.464036 TGGCCGTCACTACATCATCC 59.536 55.000 0.00 0.00 0.00 3.51
6393 6610 0.995675 ATTCTGCCCTGCCCTACCAT 60.996 55.000 0.00 0.00 0.00 3.55
6394 6611 1.619363 ATTCTGCCCTGCCCTACCA 60.619 57.895 0.00 0.00 0.00 3.25
6395 6612 1.149401 GATTCTGCCCTGCCCTACC 59.851 63.158 0.00 0.00 0.00 3.18
6396 6613 1.149401 GGATTCTGCCCTGCCCTAC 59.851 63.158 0.00 0.00 0.00 3.18
6397 6614 1.307778 TGGATTCTGCCCTGCCCTA 60.308 57.895 0.00 0.00 0.00 3.53
6398 6615 2.614969 TGGATTCTGCCCTGCCCT 60.615 61.111 0.00 0.00 0.00 5.19
6399 6616 2.123982 CTGGATTCTGCCCTGCCC 60.124 66.667 0.00 0.00 0.00 5.36
6400 6617 1.452833 GACTGGATTCTGCCCTGCC 60.453 63.158 0.00 0.00 0.00 4.85
6401 6618 1.452833 GGACTGGATTCTGCCCTGC 60.453 63.158 0.00 0.00 0.00 4.85
6402 6619 1.153289 CGGACTGGATTCTGCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
6445 6672 3.643763 GTGAGCCATCATTAGTCGGTAG 58.356 50.000 0.00 0.00 37.87 3.18
6446 6673 2.034179 CGTGAGCCATCATTAGTCGGTA 59.966 50.000 0.00 0.00 37.87 4.02
6447 6674 1.202417 CGTGAGCCATCATTAGTCGGT 60.202 52.381 0.00 0.00 37.87 4.69
6469 6696 0.328258 TGGGAGTGCTTTTAGGCTCC 59.672 55.000 0.00 0.00 44.93 4.70
6470 6697 1.454201 GTGGGAGTGCTTTTAGGCTC 58.546 55.000 0.00 0.00 0.00 4.70
6490 6717 2.777832 AAGGTAAGAGGCAGAGCAAG 57.222 50.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.