Multiple sequence alignment - TraesCS1B01G434300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G434300 chr1B 100.000 4603 0 0 1 4603 658907133 658911735 0.000000e+00 8501.0
1 TraesCS1B01G434300 chr1B 92.683 41 2 1 480 520 312485830 312485869 1.790000e-04 58.4
2 TraesCS1B01G434300 chr1D 90.722 4085 161 86 641 4603 473855326 473859314 0.000000e+00 5243.0
3 TraesCS1B01G434300 chr1D 91.690 361 24 3 56 414 473854970 473855326 3.200000e-136 496.0
4 TraesCS1B01G434300 chrUn 95.525 1989 73 8 2041 4023 1493840 1491862 0.000000e+00 3166.0
5 TraesCS1B01G434300 chrUn 85.347 1167 67 47 835 1948 1494993 1493878 0.000000e+00 1112.0
6 TraesCS1B01G434300 chrUn 88.588 517 41 13 4094 4603 1491757 1491252 3.040000e-171 612.0
7 TraesCS1B01G434300 chr7A 91.034 290 21 3 56 344 692504045 692503760 2.010000e-103 387.0
8 TraesCS1B01G434300 chr7A 95.000 60 2 1 1 60 156135383 156135441 4.900000e-15 93.5
9 TraesCS1B01G434300 chr7B 87.713 293 27 6 56 344 735918914 735918627 2.650000e-87 333.0
10 TraesCS1B01G434300 chr2D 86.713 286 33 3 60 344 446847624 446847343 3.460000e-81 313.0
11 TraesCS1B01G434300 chr2D 90.196 51 4 1 59 108 608431266 608431216 1.070000e-06 65.8
12 TraesCS1B01G434300 chr7D 85.017 287 37 4 60 344 569123819 569124101 2.100000e-73 287.0
13 TraesCS1B01G434300 chr7D 96.667 60 1 1 1 60 460053987 460053929 1.050000e-16 99.0
14 TraesCS1B01G434300 chr3A 85.433 254 35 2 2820 3072 78718437 78718185 3.530000e-66 263.0
15 TraesCS1B01G434300 chr3D 84.980 253 36 2 2820 3071 67459578 67459327 5.910000e-64 255.0
16 TraesCS1B01G434300 chr3D 95.000 60 2 1 1 60 515229558 515229616 4.900000e-15 93.5
17 TraesCS1B01G434300 chr3D 96.491 57 1 1 4 60 589558137 589558082 4.900000e-15 93.5
18 TraesCS1B01G434300 chr3B 83.730 252 39 2 2821 3071 112263552 112263302 2.140000e-58 237.0
19 TraesCS1B01G434300 chr3B 88.462 78 9 0 489 566 748463006 748463083 1.360000e-15 95.3
20 TraesCS1B01G434300 chr6B 96.667 60 1 1 1 60 705610184 705610126 1.050000e-16 99.0
21 TraesCS1B01G434300 chr5A 96.667 60 1 1 1 60 678081843 678081901 1.050000e-16 99.0
22 TraesCS1B01G434300 chr5A 90.000 50 1 3 489 536 540392371 540392324 1.380000e-05 62.1
23 TraesCS1B01G434300 chr5A 100.000 31 0 0 490 520 649708098 649708128 1.790000e-04 58.4
24 TraesCS1B01G434300 chr6D 95.000 60 2 1 1 60 16202481 16202539 4.900000e-15 93.5
25 TraesCS1B01G434300 chr6D 96.774 31 1 0 490 520 435306943 435306973 8.000000e-03 52.8
26 TraesCS1B01G434300 chr2B 96.491 57 1 1 4 60 64780174 64780119 4.900000e-15 93.5
27 TraesCS1B01G434300 chr2B 95.455 44 1 1 60 103 741730573 741730531 8.260000e-08 69.4
28 TraesCS1B01G434300 chr2A 95.000 60 2 1 1 60 102025109 102025167 4.900000e-15 93.5
29 TraesCS1B01G434300 chr2A 96.875 32 1 0 489 520 549995748 549995717 2.000000e-03 54.7
30 TraesCS1B01G434300 chr1A 96.875 32 1 0 489 520 378751573 378751542 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G434300 chr1B 658907133 658911735 4602 False 8501.0 8501 100.000 1 4603 1 chr1B.!!$F2 4602
1 TraesCS1B01G434300 chr1D 473854970 473859314 4344 False 2869.5 5243 91.206 56 4603 2 chr1D.!!$F1 4547
2 TraesCS1B01G434300 chrUn 1491252 1494993 3741 True 1630.0 3166 89.820 835 4603 3 chrUn.!!$R1 3768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 936 0.104672 TTCTCTTCCACCCACCAGGA 60.105 55.000 0.00 0.00 39.89 3.86 F
1486 1560 0.099436 GTGTTTCTGGATCCATGCGC 59.901 55.000 16.63 0.00 0.00 6.09 F
1489 1563 0.179048 TTTCTGGATCCATGCGCGAT 60.179 50.000 16.63 0.00 0.00 4.58 F
1649 1727 0.961857 GGTAATTTTCCCGGTGCGGT 60.962 55.000 0.00 0.00 46.80 5.68 F
2127 2231 1.939255 GCCTATGACTTTGAGCAGCTC 59.061 52.381 16.21 16.21 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1958 0.036732 TTTCTGTGTGGCTGGGCTAG 59.963 55.000 0.0 0.0 0.00 3.42 R
2749 2853 0.395862 TGGATGAGGACGAGGAGGAC 60.396 60.000 0.0 0.0 0.00 3.85 R
2752 2856 1.697284 TCATGGATGAGGACGAGGAG 58.303 55.000 0.0 0.0 32.11 3.69 R
3104 3230 3.121030 CGCGCCAGGAAGTTGGAG 61.121 66.667 0.0 0.0 40.87 3.86 R
4086 4227 4.307443 AGTTGCTTTACACTTTGCCTTC 57.693 40.909 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.716646 TCGTATAAATATAATGCATCACCAGG 57.283 34.615 0.00 0.00 0.00 4.45
28 29 7.279981 TCGTATAAATATAATGCATCACCAGGC 59.720 37.037 0.00 0.00 0.00 4.85
29 30 4.771590 AAATATAATGCATCACCAGGCG 57.228 40.909 0.00 0.00 0.00 5.52
30 31 1.522668 TATAATGCATCACCAGGCGC 58.477 50.000 0.00 0.00 0.00 6.53
31 32 1.509644 ATAATGCATCACCAGGCGCG 61.510 55.000 0.00 0.00 0.00 6.86
58 59 2.356313 CCACGCGGGCTATGCTAG 60.356 66.667 12.47 0.00 0.00 3.42
59 60 2.417516 CACGCGGGCTATGCTAGT 59.582 61.111 12.47 0.00 0.00 2.57
60 61 1.661821 CACGCGGGCTATGCTAGTC 60.662 63.158 12.47 0.00 0.00 2.59
89 90 5.275067 AGACTAATGTTCCTCTCATGAGC 57.725 43.478 18.36 4.10 38.93 4.26
119 120 5.123502 TCATTCTGTCTCACTAACTCGGTAC 59.876 44.000 0.00 0.00 0.00 3.34
157 158 3.118992 TCAACATCCCTCGACTGAATCAG 60.119 47.826 8.98 8.98 37.52 2.90
176 179 1.068588 AGTAGCAGCAGTTCGACACAA 59.931 47.619 0.00 0.00 0.00 3.33
177 180 2.069273 GTAGCAGCAGTTCGACACAAT 58.931 47.619 0.00 0.00 0.00 2.71
206 209 1.507141 CCACCAGTGGCAAGTTCGAC 61.507 60.000 9.78 0.00 44.73 4.20
224 227 2.973899 GAGTGAAGAGCCAGCCGA 59.026 61.111 0.00 0.00 0.00 5.54
234 237 2.035442 GCCAGCCGAAGTCCTTCAC 61.035 63.158 7.73 0.00 39.46 3.18
240 243 0.613260 CCGAAGTCCTTCACCCATCA 59.387 55.000 7.73 0.00 39.46 3.07
246 249 1.746615 CCTTCACCCATCACAGCCG 60.747 63.158 0.00 0.00 0.00 5.52
294 297 3.326981 CGAGCACACGTGTCGCAA 61.327 61.111 30.73 0.00 31.50 4.85
295 298 2.245532 GAGCACACGTGTCGCAAC 59.754 61.111 30.73 23.37 0.00 4.17
297 300 2.031044 GAGCACACGTGTCGCAACAA 62.031 55.000 30.73 0.00 37.08 2.83
298 301 1.932564 GCACACGTGTCGCAACAAC 60.933 57.895 27.10 6.89 37.08 3.32
299 302 1.421877 CACACGTGTCGCAACAACA 59.578 52.632 20.49 0.00 37.08 3.33
300 303 0.179212 CACACGTGTCGCAACAACAA 60.179 50.000 20.49 0.00 37.08 2.83
317 320 4.142138 ACAACAAAAATAACCGCACCTTCA 60.142 37.500 0.00 0.00 0.00 3.02
319 322 4.555262 ACAAAAATAACCGCACCTTCATG 58.445 39.130 0.00 0.00 0.00 3.07
328 331 1.811266 CACCTTCATGGGTCGCGAG 60.811 63.158 10.24 0.00 41.11 5.03
345 348 2.591715 GGAATCATCCCCGCACGG 60.592 66.667 1.02 1.02 40.10 4.94
391 394 7.496747 AGGCAAACAGAGAAGATTATCTAGAC 58.503 38.462 0.00 0.00 0.00 2.59
402 405 5.147865 AGATTATCTAGACAAATCGCGTCG 58.852 41.667 17.66 0.00 38.46 5.12
414 417 3.338676 GCGTCGAATCATCCCCGC 61.339 66.667 0.00 0.00 35.12 6.13
415 418 2.106131 CGTCGAATCATCCCCGCA 59.894 61.111 0.00 0.00 0.00 5.69
416 419 2.237751 CGTCGAATCATCCCCGCAC 61.238 63.158 0.00 0.00 0.00 5.34
417 420 1.887707 GTCGAATCATCCCCGCACC 60.888 63.158 0.00 0.00 0.00 5.01
418 421 2.063979 TCGAATCATCCCCGCACCT 61.064 57.895 0.00 0.00 0.00 4.00
419 422 1.153168 CGAATCATCCCCGCACCTT 60.153 57.895 0.00 0.00 0.00 3.50
420 423 1.160329 CGAATCATCCCCGCACCTTC 61.160 60.000 0.00 0.00 0.00 3.46
421 424 1.153168 AATCATCCCCGCACCTTCG 60.153 57.895 0.00 0.00 0.00 3.79
422 425 1.910580 AATCATCCCCGCACCTTCGT 61.911 55.000 0.00 0.00 0.00 3.85
423 426 2.593468 ATCATCCCCGCACCTTCGTG 62.593 60.000 0.00 0.00 43.35 4.35
424 427 3.000819 ATCCCCGCACCTTCGTGA 61.001 61.111 0.00 0.00 43.14 4.35
425 428 2.367202 ATCCCCGCACCTTCGTGAT 61.367 57.895 0.00 0.00 43.14 3.06
426 429 2.311688 ATCCCCGCACCTTCGTGATC 62.312 60.000 0.00 0.00 43.14 2.92
427 430 2.885644 CCCGCACCTTCGTGATCG 60.886 66.667 0.00 0.00 43.14 3.69
428 431 2.180769 CCGCACCTTCGTGATCGA 59.819 61.111 0.00 0.00 43.14 3.59
429 432 1.874019 CCGCACCTTCGTGATCGAG 60.874 63.158 0.00 0.00 46.81 4.04
430 433 1.136774 CGCACCTTCGTGATCGAGA 59.863 57.895 0.00 0.00 46.81 4.04
431 434 0.248661 CGCACCTTCGTGATCGAGAT 60.249 55.000 0.00 0.00 46.81 2.75
432 435 1.799181 CGCACCTTCGTGATCGAGATT 60.799 52.381 0.00 0.00 46.81 2.40
433 436 2.540973 CGCACCTTCGTGATCGAGATTA 60.541 50.000 0.00 0.00 46.81 1.75
434 437 3.643763 GCACCTTCGTGATCGAGATTAT 58.356 45.455 0.00 0.00 46.81 1.28
435 438 4.051922 GCACCTTCGTGATCGAGATTATT 58.948 43.478 0.00 0.00 46.81 1.40
436 439 4.508124 GCACCTTCGTGATCGAGATTATTT 59.492 41.667 0.00 0.00 46.81 1.40
437 440 5.557136 GCACCTTCGTGATCGAGATTATTTG 60.557 44.000 0.00 0.00 46.81 2.32
438 441 4.508124 ACCTTCGTGATCGAGATTATTTGC 59.492 41.667 0.00 0.00 46.81 3.68
439 442 4.375405 CCTTCGTGATCGAGATTATTTGCG 60.375 45.833 0.00 0.00 46.81 4.85
440 443 3.959943 TCGTGATCGAGATTATTTGCGA 58.040 40.909 0.00 0.00 41.35 5.10
441 444 3.975035 TCGTGATCGAGATTATTTGCGAG 59.025 43.478 0.00 0.00 41.35 5.03
442 445 3.975035 CGTGATCGAGATTATTTGCGAGA 59.025 43.478 0.00 0.00 39.71 4.04
443 446 4.087789 CGTGATCGAGATTATTTGCGAGAG 59.912 45.833 0.00 0.00 39.71 3.20
444 447 5.215903 GTGATCGAGATTATTTGCGAGAGA 58.784 41.667 0.00 0.00 36.12 3.10
445 448 5.687730 GTGATCGAGATTATTTGCGAGAGAA 59.312 40.000 0.00 0.00 36.12 2.87
446 449 6.199154 GTGATCGAGATTATTTGCGAGAGAAA 59.801 38.462 0.00 0.00 36.12 2.52
447 450 6.419116 TGATCGAGATTATTTGCGAGAGAAAG 59.581 38.462 0.00 0.00 36.12 2.62
448 451 5.891451 TCGAGATTATTTGCGAGAGAAAGA 58.109 37.500 0.00 0.00 0.00 2.52
449 452 6.330278 TCGAGATTATTTGCGAGAGAAAGAA 58.670 36.000 0.00 0.00 0.00 2.52
450 453 6.811665 TCGAGATTATTTGCGAGAGAAAGAAA 59.188 34.615 0.00 0.00 0.00 2.52
451 454 7.330946 TCGAGATTATTTGCGAGAGAAAGAAAA 59.669 33.333 0.00 0.00 0.00 2.29
452 455 7.423882 CGAGATTATTTGCGAGAGAAAGAAAAC 59.576 37.037 0.00 0.00 0.00 2.43
453 456 8.099364 AGATTATTTGCGAGAGAAAGAAAACA 57.901 30.769 0.00 0.00 0.00 2.83
454 457 8.567948 AGATTATTTGCGAGAGAAAGAAAACAA 58.432 29.630 0.00 0.00 0.00 2.83
455 458 9.180678 GATTATTTGCGAGAGAAAGAAAACAAA 57.819 29.630 0.00 0.00 0.00 2.83
456 459 8.560576 TTATTTGCGAGAGAAAGAAAACAAAG 57.439 30.769 0.00 0.00 0.00 2.77
457 460 5.811399 TTGCGAGAGAAAGAAAACAAAGA 57.189 34.783 0.00 0.00 0.00 2.52
458 461 5.811399 TGCGAGAGAAAGAAAACAAAGAA 57.189 34.783 0.00 0.00 0.00 2.52
459 462 5.810525 TGCGAGAGAAAGAAAACAAAGAAG 58.189 37.500 0.00 0.00 0.00 2.85
460 463 5.584649 TGCGAGAGAAAGAAAACAAAGAAGA 59.415 36.000 0.00 0.00 0.00 2.87
461 464 6.260936 TGCGAGAGAAAGAAAACAAAGAAGAT 59.739 34.615 0.00 0.00 0.00 2.40
462 465 6.576684 GCGAGAGAAAGAAAACAAAGAAGATG 59.423 38.462 0.00 0.00 0.00 2.90
463 466 7.519008 GCGAGAGAAAGAAAACAAAGAAGATGA 60.519 37.037 0.00 0.00 0.00 2.92
464 467 8.502387 CGAGAGAAAGAAAACAAAGAAGATGAT 58.498 33.333 0.00 0.00 0.00 2.45
465 468 9.609950 GAGAGAAAGAAAACAAAGAAGATGATG 57.390 33.333 0.00 0.00 0.00 3.07
466 469 9.129532 AGAGAAAGAAAACAAAGAAGATGATGT 57.870 29.630 0.00 0.00 0.00 3.06
467 470 9.392021 GAGAAAGAAAACAAAGAAGATGATGTC 57.608 33.333 0.00 0.00 0.00 3.06
468 471 8.906867 AGAAAGAAAACAAAGAAGATGATGTCA 58.093 29.630 0.00 0.00 0.00 3.58
469 472 9.520204 GAAAGAAAACAAAGAAGATGATGTCAA 57.480 29.630 0.00 0.00 0.00 3.18
470 473 9.525409 AAAGAAAACAAAGAAGATGATGTCAAG 57.475 29.630 0.00 0.00 0.00 3.02
471 474 8.230472 AGAAAACAAAGAAGATGATGTCAAGT 57.770 30.769 0.00 0.00 0.00 3.16
472 475 8.133627 AGAAAACAAAGAAGATGATGTCAAGTG 58.866 33.333 0.00 0.00 0.00 3.16
473 476 5.368256 ACAAAGAAGATGATGTCAAGTGC 57.632 39.130 0.00 0.00 0.00 4.40
474 477 5.068636 ACAAAGAAGATGATGTCAAGTGCT 58.931 37.500 0.00 0.00 0.00 4.40
475 478 5.180868 ACAAAGAAGATGATGTCAAGTGCTC 59.819 40.000 0.00 0.00 0.00 4.26
476 479 3.871485 AGAAGATGATGTCAAGTGCTCC 58.129 45.455 0.00 0.00 0.00 4.70
477 480 2.706339 AGATGATGTCAAGTGCTCCC 57.294 50.000 0.00 0.00 0.00 4.30
478 481 1.134580 AGATGATGTCAAGTGCTCCCG 60.135 52.381 0.00 0.00 0.00 5.14
479 482 0.745845 ATGATGTCAAGTGCTCCCGC 60.746 55.000 0.00 0.00 0.00 6.13
480 483 2.045926 ATGTCAAGTGCTCCCGCC 60.046 61.111 0.00 0.00 34.43 6.13
481 484 3.628646 ATGTCAAGTGCTCCCGCCC 62.629 63.158 0.00 0.00 34.43 6.13
482 485 4.021925 GTCAAGTGCTCCCGCCCT 62.022 66.667 0.00 0.00 34.43 5.19
483 486 3.249189 TCAAGTGCTCCCGCCCTT 61.249 61.111 0.00 0.00 34.00 3.95
484 487 2.282462 CAAGTGCTCCCGCCCTTT 60.282 61.111 0.00 0.00 31.20 3.11
485 488 2.282462 AAGTGCTCCCGCCCTTTG 60.282 61.111 0.00 0.00 29.09 2.77
486 489 3.868200 AAGTGCTCCCGCCCTTTGG 62.868 63.158 0.00 0.00 29.09 3.28
496 499 3.297904 CCCTTTGGCCCCGAATTG 58.702 61.111 0.00 0.00 0.00 2.32
497 500 2.578664 CCTTTGGCCCCGAATTGC 59.421 61.111 0.00 0.00 0.00 3.56
498 501 1.984026 CCTTTGGCCCCGAATTGCT 60.984 57.895 0.00 0.00 0.00 3.91
499 502 1.543944 CCTTTGGCCCCGAATTGCTT 61.544 55.000 0.00 0.00 0.00 3.91
500 503 0.390209 CTTTGGCCCCGAATTGCTTG 60.390 55.000 0.00 0.00 0.00 4.01
501 504 1.118356 TTTGGCCCCGAATTGCTTGT 61.118 50.000 0.00 0.00 0.00 3.16
502 505 1.531739 TTGGCCCCGAATTGCTTGTC 61.532 55.000 0.00 0.00 0.00 3.18
503 506 1.678970 GGCCCCGAATTGCTTGTCT 60.679 57.895 0.00 0.00 0.00 3.41
504 507 1.250840 GGCCCCGAATTGCTTGTCTT 61.251 55.000 0.00 0.00 0.00 3.01
505 508 1.459450 GCCCCGAATTGCTTGTCTTA 58.541 50.000 0.00 0.00 0.00 2.10
506 509 1.401905 GCCCCGAATTGCTTGTCTTAG 59.598 52.381 0.00 0.00 0.00 2.18
507 510 2.939640 GCCCCGAATTGCTTGTCTTAGA 60.940 50.000 0.00 0.00 0.00 2.10
508 511 3.545703 CCCCGAATTGCTTGTCTTAGAT 58.454 45.455 0.00 0.00 0.00 1.98
509 512 3.947834 CCCCGAATTGCTTGTCTTAGATT 59.052 43.478 0.00 0.00 0.00 2.40
510 513 4.399303 CCCCGAATTGCTTGTCTTAGATTT 59.601 41.667 0.00 0.00 0.00 2.17
511 514 5.335127 CCCGAATTGCTTGTCTTAGATTTG 58.665 41.667 0.00 0.00 0.00 2.32
512 515 5.106157 CCCGAATTGCTTGTCTTAGATTTGT 60.106 40.000 0.00 0.00 0.00 2.83
513 516 6.024049 CCGAATTGCTTGTCTTAGATTTGTC 58.976 40.000 0.00 0.00 0.00 3.18
514 517 6.128172 CCGAATTGCTTGTCTTAGATTTGTCT 60.128 38.462 0.00 0.00 0.00 3.41
515 518 7.064609 CCGAATTGCTTGTCTTAGATTTGTCTA 59.935 37.037 0.00 0.00 0.00 2.59
516 519 8.113062 CGAATTGCTTGTCTTAGATTTGTCTAG 58.887 37.037 0.00 0.00 0.00 2.43
517 520 9.155975 GAATTGCTTGTCTTAGATTTGTCTAGA 57.844 33.333 0.00 0.00 0.00 2.43
518 521 9.678260 AATTGCTTGTCTTAGATTTGTCTAGAT 57.322 29.630 0.00 0.00 0.00 1.98
525 528 9.967346 TGTCTTAGATTTGTCTAGATAAATCCG 57.033 33.333 33.79 26.14 44.71 4.18
526 529 9.968870 GTCTTAGATTTGTCTAGATAAATCCGT 57.031 33.333 33.79 24.92 44.71 4.69
544 547 8.974060 AAATCCGTATCTAGGCAAATTTAAGA 57.026 30.769 0.00 0.00 0.00 2.10
545 548 7.964604 ATCCGTATCTAGGCAAATTTAAGAC 57.035 36.000 0.00 0.00 0.00 3.01
546 549 6.880484 TCCGTATCTAGGCAAATTTAAGACA 58.120 36.000 0.00 0.00 0.00 3.41
547 550 7.332557 TCCGTATCTAGGCAAATTTAAGACAA 58.667 34.615 0.00 0.00 0.00 3.18
548 551 7.990886 TCCGTATCTAGGCAAATTTAAGACAAT 59.009 33.333 0.00 0.00 0.00 2.71
549 552 8.621286 CCGTATCTAGGCAAATTTAAGACAATT 58.379 33.333 0.00 0.00 0.00 2.32
564 567 8.726870 TTAAGACAATTAATTTAGGACGGAGG 57.273 34.615 0.00 0.00 0.00 4.30
565 568 6.309389 AGACAATTAATTTAGGACGGAGGT 57.691 37.500 0.00 0.00 0.00 3.85
566 569 6.113411 AGACAATTAATTTAGGACGGAGGTG 58.887 40.000 0.00 0.00 0.00 4.00
567 570 6.057321 ACAATTAATTTAGGACGGAGGTGA 57.943 37.500 0.00 0.00 0.00 4.02
568 571 6.113411 ACAATTAATTTAGGACGGAGGTGAG 58.887 40.000 0.00 0.00 0.00 3.51
569 572 6.070424 ACAATTAATTTAGGACGGAGGTGAGA 60.070 38.462 0.00 0.00 0.00 3.27
570 573 6.749036 ATTAATTTAGGACGGAGGTGAGAT 57.251 37.500 0.00 0.00 0.00 2.75
571 574 6.555463 TTAATTTAGGACGGAGGTGAGATT 57.445 37.500 0.00 0.00 0.00 2.40
572 575 5.437191 AATTTAGGACGGAGGTGAGATTT 57.563 39.130 0.00 0.00 0.00 2.17
573 576 3.887621 TTAGGACGGAGGTGAGATTTG 57.112 47.619 0.00 0.00 0.00 2.32
574 577 0.250513 AGGACGGAGGTGAGATTTGC 59.749 55.000 0.00 0.00 0.00 3.68
575 578 0.744771 GGACGGAGGTGAGATTTGCC 60.745 60.000 0.00 0.00 0.00 4.52
576 579 0.250513 GACGGAGGTGAGATTTGCCT 59.749 55.000 0.00 0.00 34.93 4.75
577 580 1.480954 GACGGAGGTGAGATTTGCCTA 59.519 52.381 0.00 0.00 31.89 3.93
578 581 1.482593 ACGGAGGTGAGATTTGCCTAG 59.517 52.381 0.00 0.00 31.89 3.02
579 582 1.202580 CGGAGGTGAGATTTGCCTAGG 60.203 57.143 3.67 3.67 31.89 3.02
580 583 2.119495 GGAGGTGAGATTTGCCTAGGA 58.881 52.381 14.75 0.00 31.89 2.94
581 584 2.708325 GGAGGTGAGATTTGCCTAGGAT 59.292 50.000 14.75 0.00 31.89 3.24
582 585 3.137360 GGAGGTGAGATTTGCCTAGGATT 59.863 47.826 14.75 0.00 31.89 3.01
583 586 4.348168 GGAGGTGAGATTTGCCTAGGATTA 59.652 45.833 14.75 0.00 31.89 1.75
584 587 5.013599 GGAGGTGAGATTTGCCTAGGATTAT 59.986 44.000 14.75 0.83 31.89 1.28
585 588 5.874093 AGGTGAGATTTGCCTAGGATTATG 58.126 41.667 14.75 0.00 0.00 1.90
586 589 5.370880 AGGTGAGATTTGCCTAGGATTATGT 59.629 40.000 14.75 0.00 0.00 2.29
587 590 5.703130 GGTGAGATTTGCCTAGGATTATGTC 59.297 44.000 14.75 9.89 0.00 3.06
588 591 6.465035 GGTGAGATTTGCCTAGGATTATGTCT 60.465 42.308 14.75 7.23 0.00 3.41
589 592 6.995091 GTGAGATTTGCCTAGGATTATGTCTT 59.005 38.462 14.75 0.00 0.00 3.01
590 593 6.994496 TGAGATTTGCCTAGGATTATGTCTTG 59.006 38.462 14.75 0.00 0.00 3.02
591 594 5.767168 AGATTTGCCTAGGATTATGTCTTGC 59.233 40.000 14.75 0.00 0.00 4.01
592 595 4.778213 TTGCCTAGGATTATGTCTTGCT 57.222 40.909 14.75 0.00 0.00 3.91
593 596 5.887214 TTGCCTAGGATTATGTCTTGCTA 57.113 39.130 14.75 0.00 0.00 3.49
594 597 5.474578 TGCCTAGGATTATGTCTTGCTAG 57.525 43.478 14.75 0.00 0.00 3.42
595 598 4.284490 TGCCTAGGATTATGTCTTGCTAGG 59.716 45.833 14.75 11.77 38.45 3.02
596 599 4.284746 GCCTAGGATTATGTCTTGCTAGGT 59.715 45.833 14.75 0.00 38.06 3.08
597 600 5.221742 GCCTAGGATTATGTCTTGCTAGGTT 60.222 44.000 14.75 0.00 38.06 3.50
598 601 6.689177 GCCTAGGATTATGTCTTGCTAGGTTT 60.689 42.308 14.75 0.00 38.06 3.27
599 602 7.472945 GCCTAGGATTATGTCTTGCTAGGTTTA 60.473 40.741 14.75 0.00 38.06 2.01
600 603 8.598041 CCTAGGATTATGTCTTGCTAGGTTTAT 58.402 37.037 1.05 0.00 34.34 1.40
603 606 9.700831 AGGATTATGTCTTGCTAGGTTTATTTT 57.299 29.630 0.00 0.00 0.00 1.82
604 607 9.736023 GGATTATGTCTTGCTAGGTTTATTTTG 57.264 33.333 0.00 0.00 0.00 2.44
609 612 7.090173 TGTCTTGCTAGGTTTATTTTGAATGC 58.910 34.615 0.00 0.00 0.00 3.56
610 613 7.090173 GTCTTGCTAGGTTTATTTTGAATGCA 58.910 34.615 0.00 0.00 0.00 3.96
611 614 7.062255 GTCTTGCTAGGTTTATTTTGAATGCAC 59.938 37.037 0.00 0.00 0.00 4.57
612 615 5.398169 TGCTAGGTTTATTTTGAATGCACG 58.602 37.500 0.00 0.00 0.00 5.34
613 616 5.182190 TGCTAGGTTTATTTTGAATGCACGA 59.818 36.000 0.00 0.00 0.00 4.35
614 617 6.127758 TGCTAGGTTTATTTTGAATGCACGAT 60.128 34.615 0.00 0.00 0.00 3.73
615 618 6.197096 GCTAGGTTTATTTTGAATGCACGATG 59.803 38.462 0.00 0.00 0.00 3.84
616 619 4.864247 AGGTTTATTTTGAATGCACGATGC 59.136 37.500 0.00 0.00 45.29 3.91
625 628 3.354678 GCACGATGCAGTTTGGGT 58.645 55.556 0.00 0.00 44.26 4.51
626 629 2.550487 GCACGATGCAGTTTGGGTA 58.450 52.632 0.00 0.00 44.26 3.69
627 630 1.094785 GCACGATGCAGTTTGGGTAT 58.905 50.000 0.00 0.00 44.26 2.73
628 631 1.202177 GCACGATGCAGTTTGGGTATG 60.202 52.381 0.00 0.00 44.26 2.39
629 632 2.083774 CACGATGCAGTTTGGGTATGT 58.916 47.619 0.00 0.00 0.00 2.29
630 633 2.095853 CACGATGCAGTTTGGGTATGTC 59.904 50.000 0.00 0.00 0.00 3.06
631 634 2.290008 ACGATGCAGTTTGGGTATGTCA 60.290 45.455 0.00 0.00 0.00 3.58
632 635 2.945008 CGATGCAGTTTGGGTATGTCAT 59.055 45.455 0.00 0.00 0.00 3.06
633 636 3.242837 CGATGCAGTTTGGGTATGTCATG 60.243 47.826 0.00 0.00 0.00 3.07
634 637 3.153369 TGCAGTTTGGGTATGTCATGT 57.847 42.857 0.00 0.00 0.00 3.21
635 638 3.495331 TGCAGTTTGGGTATGTCATGTT 58.505 40.909 0.00 0.00 0.00 2.71
636 639 3.505680 TGCAGTTTGGGTATGTCATGTTC 59.494 43.478 0.00 0.00 0.00 3.18
637 640 3.119495 GCAGTTTGGGTATGTCATGTTCC 60.119 47.826 0.00 0.00 0.00 3.62
638 641 4.078537 CAGTTTGGGTATGTCATGTTCCA 58.921 43.478 0.00 0.00 0.00 3.53
639 642 4.706476 CAGTTTGGGTATGTCATGTTCCAT 59.294 41.667 0.00 0.00 0.00 3.41
640 643 4.706476 AGTTTGGGTATGTCATGTTCCATG 59.294 41.667 0.00 0.00 0.00 3.66
651 654 4.018490 TCATGTTCCATGAATTGGTGGAG 58.982 43.478 4.50 0.00 44.74 3.86
658 661 3.194116 CCATGAATTGGTGGAGGAAGTTG 59.806 47.826 0.00 0.00 40.99 3.16
659 662 3.593442 TGAATTGGTGGAGGAAGTTGT 57.407 42.857 0.00 0.00 0.00 3.32
660 663 3.486383 TGAATTGGTGGAGGAAGTTGTC 58.514 45.455 0.00 0.00 0.00 3.18
661 664 3.117701 TGAATTGGTGGAGGAAGTTGTCA 60.118 43.478 0.00 0.00 0.00 3.58
756 759 2.517919 GGATCACCAGGGGCATCC 59.482 66.667 4.84 4.84 35.97 3.51
805 808 1.313091 GGTTGACCATTTCGCTCCCC 61.313 60.000 0.00 0.00 35.64 4.81
828 842 3.546543 GGCTGCATGGCATGGCAT 61.547 61.111 27.75 27.75 39.65 4.40
838 857 4.580044 CATGGCATGCGACGCGAC 62.580 66.667 15.93 5.54 0.00 5.19
906 925 1.788229 CCCCCTCTCTCTTCTCTTCC 58.212 60.000 0.00 0.00 0.00 3.46
907 926 1.007721 CCCCCTCTCTCTTCTCTTCCA 59.992 57.143 0.00 0.00 0.00 3.53
908 927 2.107366 CCCCTCTCTCTTCTCTTCCAC 58.893 57.143 0.00 0.00 0.00 4.02
909 928 2.107366 CCCTCTCTCTTCTCTTCCACC 58.893 57.143 0.00 0.00 0.00 4.61
910 929 2.107366 CCTCTCTCTTCTCTTCCACCC 58.893 57.143 0.00 0.00 0.00 4.61
911 930 2.558575 CCTCTCTCTTCTCTTCCACCCA 60.559 54.545 0.00 0.00 0.00 4.51
912 931 2.495669 CTCTCTCTTCTCTTCCACCCAC 59.504 54.545 0.00 0.00 0.00 4.61
913 932 1.552792 CTCTCTTCTCTTCCACCCACC 59.447 57.143 0.00 0.00 0.00 4.61
914 933 1.132849 TCTCTTCTCTTCCACCCACCA 60.133 52.381 0.00 0.00 0.00 4.17
915 934 1.277557 CTCTTCTCTTCCACCCACCAG 59.722 57.143 0.00 0.00 0.00 4.00
916 935 0.326264 CTTCTCTTCCACCCACCAGG 59.674 60.000 0.00 0.00 43.78 4.45
917 936 0.104672 TTCTCTTCCACCCACCAGGA 60.105 55.000 0.00 0.00 39.89 3.86
918 937 0.545309 TCTCTTCCACCCACCAGGAG 60.545 60.000 0.00 0.00 39.89 3.69
919 938 0.545309 CTCTTCCACCCACCAGGAGA 60.545 60.000 0.00 0.00 39.89 3.71
922 941 0.476771 TTCCACCCACCAGGAGAAAC 59.523 55.000 0.00 0.00 39.89 2.78
1059 1084 3.154584 TTCTTATACCCGCGCCCCG 62.155 63.158 0.00 0.00 0.00 5.73
1093 1130 4.825679 CCCCCTCCTCCTCCACCC 62.826 77.778 0.00 0.00 0.00 4.61
1109 1146 2.186826 CCCATCGCCATCCGTTTCC 61.187 63.158 0.00 0.00 38.35 3.13
1110 1147 2.186826 CCATCGCCATCCGTTTCCC 61.187 63.158 0.00 0.00 38.35 3.97
1120 1157 0.688487 TCCGTTTCCCGATTCCTTGT 59.312 50.000 0.00 0.00 39.56 3.16
1121 1158 1.084289 CCGTTTCCCGATTCCTTGTC 58.916 55.000 0.00 0.00 39.56 3.18
1122 1159 1.084289 CGTTTCCCGATTCCTTGTCC 58.916 55.000 0.00 0.00 39.56 4.02
1152 1189 0.395862 TGGATCAGTCGTCCTCCTCC 60.396 60.000 0.00 0.00 36.68 4.30
1235 1287 2.435410 GGGCTACGGGTTGAACGG 60.435 66.667 0.00 0.00 35.23 4.44
1317 1372 1.056660 AGGAGAAGCGGGACAAGAAA 58.943 50.000 0.00 0.00 0.00 2.52
1410 1480 1.488957 GTCGATGCGGCGATGAATC 59.511 57.895 12.98 6.66 42.82 2.52
1484 1558 1.131126 CGTGTGTTTCTGGATCCATGC 59.869 52.381 16.63 6.48 0.00 4.06
1486 1560 0.099436 GTGTTTCTGGATCCATGCGC 59.901 55.000 16.63 0.00 0.00 6.09
1487 1561 1.353103 GTTTCTGGATCCATGCGCG 59.647 57.895 16.63 0.00 0.00 6.86
1488 1562 1.089481 GTTTCTGGATCCATGCGCGA 61.089 55.000 16.63 5.64 0.00 5.87
1489 1563 0.179048 TTTCTGGATCCATGCGCGAT 60.179 50.000 16.63 0.00 0.00 4.58
1649 1727 0.961857 GGTAATTTTCCCGGTGCGGT 60.962 55.000 0.00 0.00 46.80 5.68
1729 1812 4.911390 CAGGAAACCAACTAAGATCCTGT 58.089 43.478 10.68 0.00 45.62 4.00
1770 1853 7.778470 AATTCAAATCCAGAAGATCGTCTAC 57.222 36.000 10.99 0.00 32.47 2.59
1775 1858 5.661056 ATCCAGAAGATCGTCTACAACAA 57.339 39.130 10.99 0.00 0.00 2.83
1777 1860 5.227908 TCCAGAAGATCGTCTACAACAAAC 58.772 41.667 10.99 0.00 0.00 2.93
1812 1895 7.913821 GCCAAAAACCCTATATTTTTCTCGTAG 59.086 37.037 0.00 0.00 37.19 3.51
1948 2050 8.154649 TGTCTAAATGGACTTGTTTCTTCTTC 57.845 34.615 0.00 0.00 37.16 2.87
1949 2051 7.993183 TGTCTAAATGGACTTGTTTCTTCTTCT 59.007 33.333 0.00 0.00 37.16 2.85
1950 2052 8.841300 GTCTAAATGGACTTGTTTCTTCTTCTT 58.159 33.333 0.00 0.00 33.81 2.52
1951 2053 9.057089 TCTAAATGGACTTGTTTCTTCTTCTTC 57.943 33.333 0.00 0.00 0.00 2.87
1953 2055 7.888250 AATGGACTTGTTTCTTCTTCTTCTT 57.112 32.000 0.00 0.00 0.00 2.52
1954 2056 6.927294 TGGACTTGTTTCTTCTTCTTCTTC 57.073 37.500 0.00 0.00 0.00 2.87
1955 2057 6.653989 TGGACTTGTTTCTTCTTCTTCTTCT 58.346 36.000 0.00 0.00 0.00 2.85
1956 2058 7.112779 TGGACTTGTTTCTTCTTCTTCTTCTT 58.887 34.615 0.00 0.00 0.00 2.52
1957 2059 7.281100 TGGACTTGTTTCTTCTTCTTCTTCTTC 59.719 37.037 0.00 0.00 0.00 2.87
1958 2060 7.497579 GGACTTGTTTCTTCTTCTTCTTCTTCT 59.502 37.037 0.00 0.00 0.00 2.85
1959 2061 8.800370 ACTTGTTTCTTCTTCTTCTTCTTCTT 57.200 30.769 0.00 0.00 0.00 2.52
1960 2062 8.888716 ACTTGTTTCTTCTTCTTCTTCTTCTTC 58.111 33.333 0.00 0.00 0.00 2.87
1961 2063 8.792830 TTGTTTCTTCTTCTTCTTCTTCTTCA 57.207 30.769 0.00 0.00 0.00 3.02
1962 2064 8.792830 TGTTTCTTCTTCTTCTTCTTCTTCAA 57.207 30.769 0.00 0.00 0.00 2.69
2016 2118 4.637387 ATACCTAGTCTAGAGCCGCTTA 57.363 45.455 8.56 0.00 0.00 3.09
2017 2119 3.294038 ACCTAGTCTAGAGCCGCTTAA 57.706 47.619 8.56 0.00 0.00 1.85
2018 2120 3.629087 ACCTAGTCTAGAGCCGCTTAAA 58.371 45.455 8.56 0.00 0.00 1.52
2080 2184 9.459276 CGTTGACTTGTTTGACTTTTATTTTTG 57.541 29.630 0.00 0.00 0.00 2.44
2083 2187 9.883142 TGACTTGTTTGACTTTTATTTTTGGAT 57.117 25.926 0.00 0.00 0.00 3.41
2121 2225 4.629200 GTCTTCTGTGCCTATGACTTTGAG 59.371 45.833 0.00 0.00 0.00 3.02
2127 2231 1.939255 GCCTATGACTTTGAGCAGCTC 59.061 52.381 16.21 16.21 0.00 4.09
2749 2853 3.254654 CCATGGTACGTGCGCTCG 61.255 66.667 28.17 28.17 0.00 5.03
2752 2856 3.695022 ATGGTACGTGCGCTCGTCC 62.695 63.158 36.72 32.35 43.12 4.79
2761 2865 3.878519 CGCTCGTCCTCCTCGTCC 61.879 72.222 0.00 0.00 0.00 4.79
2785 2889 2.124293 CATGAAGCATGGCATGGCT 58.876 52.632 27.48 20.96 43.46 4.75
2811 2937 5.579119 GGGTTTAATTAAATGTTTCTGCCGG 59.421 40.000 13.54 0.00 0.00 6.13
3606 3738 1.805254 GACACGACCGGCTAGCTTA 59.195 57.895 15.72 0.00 0.00 3.09
3683 3815 5.047802 GCTTCAGTCAAATTTTGATCAGGGA 60.048 40.000 14.54 6.20 42.47 4.20
3714 3846 6.084326 TGGCATTCTCTTTTGGTTAGTTTC 57.916 37.500 0.00 0.00 0.00 2.78
3911 4044 4.214332 GTGGCTTTAGTTCAGACCTTCAAG 59.786 45.833 0.00 0.00 0.00 3.02
3913 4046 4.822350 GGCTTTAGTTCAGACCTTCAAGTT 59.178 41.667 0.00 0.00 0.00 2.66
3920 4053 6.831976 AGTTCAGACCTTCAAGTTAAGATGT 58.168 36.000 0.00 0.00 0.00 3.06
4084 4225 0.187117 TCATGGAGCCAAACAACCCA 59.813 50.000 0.00 0.00 0.00 4.51
4086 4227 1.001181 CATGGAGCCAAACAACCCAAG 59.999 52.381 0.00 0.00 0.00 3.61
4092 4262 1.118838 CCAAACAACCCAAGAAGGCA 58.881 50.000 0.00 0.00 35.39 4.75
4134 4304 5.048224 AGCAGACAAACAGAGGATTGAATTG 60.048 40.000 0.00 0.00 31.80 2.32
4143 4313 3.132289 AGAGGATTGAATTGGCATTGCAG 59.868 43.478 11.39 0.00 0.00 4.41
4179 4350 2.540383 ACAGGGACAGAGCTGAATACA 58.460 47.619 4.21 0.00 0.00 2.29
4180 4351 2.499289 ACAGGGACAGAGCTGAATACAG 59.501 50.000 4.21 0.00 45.91 2.74
4188 4359 4.237724 CAGAGCTGAATACAGTTTCGACA 58.762 43.478 0.00 0.00 45.04 4.35
4332 4504 7.702772 GGGTGAGAAGAAAAGAAAAGAAGAAAC 59.297 37.037 0.00 0.00 0.00 2.78
4335 4507 7.962918 TGAGAAGAAAAGAAAAGAAGAAACACG 59.037 33.333 0.00 0.00 0.00 4.49
4355 4531 3.069729 ACGACTATTTCCTACTCCCATGC 59.930 47.826 0.00 0.00 0.00 4.06
4356 4532 3.069586 CGACTATTTCCTACTCCCATGCA 59.930 47.826 0.00 0.00 0.00 3.96
4370 4547 2.161012 CCCATGCATGATAAGCGATGAC 59.839 50.000 28.31 0.00 33.85 3.06
4375 4552 2.097202 GCATGATAAGCGATGACGTCAC 60.097 50.000 22.71 13.72 41.98 3.67
4478 4655 4.118410 CACCTTCACATCTATCTGCTCAC 58.882 47.826 0.00 0.00 0.00 3.51
4479 4656 3.771479 ACCTTCACATCTATCTGCTCACA 59.229 43.478 0.00 0.00 0.00 3.58
4499 4677 7.241663 TCACAAAATAGTATGCGGTGATTAC 57.758 36.000 6.83 0.00 0.00 1.89
4511 4689 3.307242 GCGGTGATTACAAACTGCTCTAG 59.693 47.826 0.00 0.00 43.84 2.43
4515 4693 5.932303 GGTGATTACAAACTGCTCTAGAACA 59.068 40.000 0.00 0.00 0.00 3.18
4519 4697 9.719355 TGATTACAAACTGCTCTAGAACAATAA 57.281 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.279981 GCCTGGTGATGCATTATATTTATACGA 59.720 37.037 0.00 0.00 0.00 3.43
3 4 7.409697 GCCTGGTGATGCATTATATTTATACG 58.590 38.462 0.00 0.00 0.00 3.06
4 5 7.409697 CGCCTGGTGATGCATTATATTTATAC 58.590 38.462 0.00 0.00 0.00 1.47
6 7 5.163622 GCGCCTGGTGATGCATTATATTTAT 60.164 40.000 12.29 0.00 0.00 1.40
7 8 4.155826 GCGCCTGGTGATGCATTATATTTA 59.844 41.667 12.29 0.00 0.00 1.40
8 9 3.057315 GCGCCTGGTGATGCATTATATTT 60.057 43.478 12.29 0.00 0.00 1.40
9 10 2.489329 GCGCCTGGTGATGCATTATATT 59.511 45.455 12.29 0.00 0.00 1.28
10 11 2.086869 GCGCCTGGTGATGCATTATAT 58.913 47.619 12.29 0.00 0.00 0.86
11 12 1.522668 GCGCCTGGTGATGCATTATA 58.477 50.000 12.29 0.00 0.00 0.98
12 13 1.509644 CGCGCCTGGTGATGCATTAT 61.510 55.000 12.29 0.00 0.00 1.28
13 14 2.179547 CGCGCCTGGTGATGCATTA 61.180 57.895 12.29 0.00 0.00 1.90
14 15 3.511595 CGCGCCTGGTGATGCATT 61.512 61.111 12.29 0.00 0.00 3.56
41 42 2.356313 CTAGCATAGCCCGCGTGG 60.356 66.667 8.42 8.42 37.09 4.94
42 43 1.661821 GACTAGCATAGCCCGCGTG 60.662 63.158 4.92 0.00 44.39 5.34
43 44 1.392710 AAGACTAGCATAGCCCGCGT 61.393 55.000 4.92 0.00 44.39 6.01
44 45 0.596577 TAAGACTAGCATAGCCCGCG 59.403 55.000 0.00 0.00 44.39 6.46
45 46 2.355717 CTAAGACTAGCATAGCCCGC 57.644 55.000 0.00 0.00 44.39 6.13
59 60 7.347252 TGAGAGGAACATTAGTCTAGCTAAGA 58.653 38.462 10.85 0.00 42.34 2.10
60 61 7.575414 TGAGAGGAACATTAGTCTAGCTAAG 57.425 40.000 10.85 7.04 42.34 2.18
122 123 3.243336 GGATGTTGATAGATCGCGGTAC 58.757 50.000 6.13 0.00 0.00 3.34
157 158 1.497991 TTGTGTCGAACTGCTGCTAC 58.502 50.000 0.00 0.00 0.00 3.58
176 179 2.276732 CACTGGTGGTGGAAACTGAT 57.723 50.000 0.00 0.00 41.90 2.90
177 180 3.798794 CACTGGTGGTGGAAACTGA 57.201 52.632 0.00 0.00 41.90 3.41
206 209 2.492449 TTCGGCTGGCTCTTCACTCG 62.492 60.000 0.00 0.00 0.00 4.18
224 227 1.271597 GCTGTGATGGGTGAAGGACTT 60.272 52.381 0.00 0.00 0.00 3.01
234 237 1.153489 CTGAGACGGCTGTGATGGG 60.153 63.158 0.80 0.00 0.00 4.00
240 243 1.758440 TTGGAAGCTGAGACGGCTGT 61.758 55.000 0.00 0.00 46.32 4.40
263 266 4.435518 CGTGTGCTCGTTAATTGTGCTAAT 60.436 41.667 0.00 0.00 0.00 1.73
294 297 4.142138 TGAAGGTGCGGTTATTTTTGTTGT 60.142 37.500 0.00 0.00 0.00 3.32
295 298 4.363999 TGAAGGTGCGGTTATTTTTGTTG 58.636 39.130 0.00 0.00 0.00 3.33
297 300 4.555262 CATGAAGGTGCGGTTATTTTTGT 58.445 39.130 0.00 0.00 0.00 2.83
298 301 3.925913 CCATGAAGGTGCGGTTATTTTTG 59.074 43.478 0.00 0.00 0.00 2.44
299 302 3.056179 CCCATGAAGGTGCGGTTATTTTT 60.056 43.478 0.00 0.00 34.66 1.94
300 303 2.495669 CCCATGAAGGTGCGGTTATTTT 59.504 45.455 0.00 0.00 34.66 1.82
317 320 0.034059 GATGATTCCTCGCGACCCAT 59.966 55.000 3.71 4.15 0.00 4.00
319 322 1.301009 GGATGATTCCTCGCGACCC 60.301 63.158 3.71 0.00 39.14 4.46
328 331 2.591715 CCGTGCGGGGATGATTCC 60.592 66.667 2.15 0.00 41.77 3.01
344 347 5.127356 CCTAGATACGGATTTATCTGGACCC 59.873 48.000 5.92 0.00 38.66 4.46
345 348 5.394333 GCCTAGATACGGATTTATCTGGACC 60.394 48.000 5.92 0.00 38.66 4.46
349 352 6.929049 TGTTTGCCTAGATACGGATTTATCTG 59.071 38.462 4.08 0.00 38.90 2.90
391 394 1.070577 GGGATGATTCGACGCGATTTG 60.071 52.381 15.93 0.00 35.23 2.32
402 405 1.160329 CGAAGGTGCGGGGATGATTC 61.160 60.000 0.00 0.00 0.00 2.52
419 422 3.959943 TCGCAAATAATCTCGATCACGA 58.040 40.909 0.00 0.00 46.56 4.35
420 423 3.975035 TCTCGCAAATAATCTCGATCACG 59.025 43.478 0.00 0.00 41.26 4.35
421 424 5.215903 TCTCTCGCAAATAATCTCGATCAC 58.784 41.667 0.00 0.00 0.00 3.06
422 425 5.438761 TCTCTCGCAAATAATCTCGATCA 57.561 39.130 0.00 0.00 0.00 2.92
423 426 6.638873 TCTTTCTCTCGCAAATAATCTCGATC 59.361 38.462 0.00 0.00 0.00 3.69
424 427 6.507900 TCTTTCTCTCGCAAATAATCTCGAT 58.492 36.000 0.00 0.00 0.00 3.59
425 428 5.891451 TCTTTCTCTCGCAAATAATCTCGA 58.109 37.500 0.00 0.00 0.00 4.04
426 429 6.575083 TTCTTTCTCTCGCAAATAATCTCG 57.425 37.500 0.00 0.00 0.00 4.04
427 430 8.230486 TGTTTTCTTTCTCTCGCAAATAATCTC 58.770 33.333 0.00 0.00 0.00 2.75
428 431 8.099364 TGTTTTCTTTCTCTCGCAAATAATCT 57.901 30.769 0.00 0.00 0.00 2.40
429 432 8.728088 TTGTTTTCTTTCTCTCGCAAATAATC 57.272 30.769 0.00 0.00 0.00 1.75
430 433 9.185192 CTTTGTTTTCTTTCTCTCGCAAATAAT 57.815 29.630 0.00 0.00 0.00 1.28
431 434 8.402472 TCTTTGTTTTCTTTCTCTCGCAAATAA 58.598 29.630 0.00 0.00 0.00 1.40
432 435 7.925993 TCTTTGTTTTCTTTCTCTCGCAAATA 58.074 30.769 0.00 0.00 0.00 1.40
433 436 6.795399 TCTTTGTTTTCTTTCTCTCGCAAAT 58.205 32.000 0.00 0.00 0.00 2.32
434 437 6.189677 TCTTTGTTTTCTTTCTCTCGCAAA 57.810 33.333 0.00 0.00 0.00 3.68
435 438 5.811399 TCTTTGTTTTCTTTCTCTCGCAA 57.189 34.783 0.00 0.00 0.00 4.85
436 439 5.584649 TCTTCTTTGTTTTCTTTCTCTCGCA 59.415 36.000 0.00 0.00 0.00 5.10
437 440 6.049263 TCTTCTTTGTTTTCTTTCTCTCGC 57.951 37.500 0.00 0.00 0.00 5.03
438 441 7.855545 TCATCTTCTTTGTTTTCTTTCTCTCG 58.144 34.615 0.00 0.00 0.00 4.04
439 442 9.609950 CATCATCTTCTTTGTTTTCTTTCTCTC 57.390 33.333 0.00 0.00 0.00 3.20
440 443 9.129532 ACATCATCTTCTTTGTTTTCTTTCTCT 57.870 29.630 0.00 0.00 0.00 3.10
441 444 9.392021 GACATCATCTTCTTTGTTTTCTTTCTC 57.608 33.333 0.00 0.00 0.00 2.87
442 445 8.906867 TGACATCATCTTCTTTGTTTTCTTTCT 58.093 29.630 0.00 0.00 0.00 2.52
443 446 9.520204 TTGACATCATCTTCTTTGTTTTCTTTC 57.480 29.630 0.00 0.00 0.00 2.62
444 447 9.525409 CTTGACATCATCTTCTTTGTTTTCTTT 57.475 29.630 0.00 0.00 0.00 2.52
445 448 8.689972 ACTTGACATCATCTTCTTTGTTTTCTT 58.310 29.630 0.00 0.00 0.00 2.52
446 449 8.133627 CACTTGACATCATCTTCTTTGTTTTCT 58.866 33.333 0.00 0.00 0.00 2.52
447 450 7.096312 GCACTTGACATCATCTTCTTTGTTTTC 60.096 37.037 0.00 0.00 0.00 2.29
448 451 6.698766 GCACTTGACATCATCTTCTTTGTTTT 59.301 34.615 0.00 0.00 0.00 2.43
449 452 6.040166 AGCACTTGACATCATCTTCTTTGTTT 59.960 34.615 0.00 0.00 0.00 2.83
450 453 5.533903 AGCACTTGACATCATCTTCTTTGTT 59.466 36.000 0.00 0.00 0.00 2.83
451 454 5.068636 AGCACTTGACATCATCTTCTTTGT 58.931 37.500 0.00 0.00 0.00 2.83
452 455 5.391736 GGAGCACTTGACATCATCTTCTTTG 60.392 44.000 0.00 0.00 0.00 2.77
453 456 4.699257 GGAGCACTTGACATCATCTTCTTT 59.301 41.667 0.00 0.00 0.00 2.52
454 457 4.260170 GGAGCACTTGACATCATCTTCTT 58.740 43.478 0.00 0.00 0.00 2.52
455 458 3.370315 GGGAGCACTTGACATCATCTTCT 60.370 47.826 0.00 0.00 0.00 2.85
456 459 2.941720 GGGAGCACTTGACATCATCTTC 59.058 50.000 0.00 0.00 0.00 2.87
457 460 2.679059 CGGGAGCACTTGACATCATCTT 60.679 50.000 0.00 0.00 0.00 2.40
458 461 1.134580 CGGGAGCACTTGACATCATCT 60.135 52.381 0.00 0.00 0.00 2.90
459 462 1.293924 CGGGAGCACTTGACATCATC 58.706 55.000 0.00 0.00 0.00 2.92
460 463 3.465990 CGGGAGCACTTGACATCAT 57.534 52.632 0.00 0.00 0.00 2.45
479 482 3.017771 GCAATTCGGGGCCAAAGGG 62.018 63.158 4.39 0.00 37.18 3.95
480 483 1.543944 AAGCAATTCGGGGCCAAAGG 61.544 55.000 4.39 0.00 0.00 3.11
481 484 0.390209 CAAGCAATTCGGGGCCAAAG 60.390 55.000 4.39 0.00 0.00 2.77
482 485 1.118356 ACAAGCAATTCGGGGCCAAA 61.118 50.000 4.39 0.00 0.00 3.28
483 486 1.531739 GACAAGCAATTCGGGGCCAA 61.532 55.000 4.39 0.00 0.00 4.52
484 487 1.976474 GACAAGCAATTCGGGGCCA 60.976 57.895 4.39 0.00 0.00 5.36
485 488 1.250840 AAGACAAGCAATTCGGGGCC 61.251 55.000 0.00 0.00 0.00 5.80
486 489 1.401905 CTAAGACAAGCAATTCGGGGC 59.598 52.381 0.00 0.00 0.00 5.80
487 490 2.985896 TCTAAGACAAGCAATTCGGGG 58.014 47.619 0.00 0.00 0.00 5.73
488 491 5.106157 ACAAATCTAAGACAAGCAATTCGGG 60.106 40.000 0.00 0.00 0.00 5.14
489 492 5.942872 ACAAATCTAAGACAAGCAATTCGG 58.057 37.500 0.00 0.00 0.00 4.30
490 493 6.835914 AGACAAATCTAAGACAAGCAATTCG 58.164 36.000 0.00 0.00 31.46 3.34
491 494 9.155975 TCTAGACAAATCTAAGACAAGCAATTC 57.844 33.333 0.00 0.00 36.98 2.17
492 495 9.678260 ATCTAGACAAATCTAAGACAAGCAATT 57.322 29.630 0.00 0.00 36.98 2.32
499 502 9.967346 CGGATTTATCTAGACAAATCTAAGACA 57.033 33.333 27.31 0.00 39.83 3.41
500 503 9.968870 ACGGATTTATCTAGACAAATCTAAGAC 57.031 33.333 27.31 14.59 39.83 3.01
519 522 8.837389 GTCTTAAATTTGCCTAGATACGGATTT 58.163 33.333 0.00 0.00 0.00 2.17
520 523 7.990886 TGTCTTAAATTTGCCTAGATACGGATT 59.009 33.333 0.00 0.00 0.00 3.01
521 524 7.506114 TGTCTTAAATTTGCCTAGATACGGAT 58.494 34.615 0.00 0.00 0.00 4.18
522 525 6.880484 TGTCTTAAATTTGCCTAGATACGGA 58.120 36.000 0.00 0.00 0.00 4.69
523 526 7.548196 TTGTCTTAAATTTGCCTAGATACGG 57.452 36.000 0.00 0.00 0.00 4.02
538 541 9.169592 CCTCCGTCCTAAATTAATTGTCTTAAA 57.830 33.333 0.39 0.00 0.00 1.52
539 542 8.323567 ACCTCCGTCCTAAATTAATTGTCTTAA 58.676 33.333 0.39 0.00 0.00 1.85
540 543 7.767198 CACCTCCGTCCTAAATTAATTGTCTTA 59.233 37.037 0.39 0.00 0.00 2.10
541 544 6.598064 CACCTCCGTCCTAAATTAATTGTCTT 59.402 38.462 0.39 0.00 0.00 3.01
542 545 6.070424 TCACCTCCGTCCTAAATTAATTGTCT 60.070 38.462 0.39 0.00 0.00 3.41
543 546 6.110707 TCACCTCCGTCCTAAATTAATTGTC 58.889 40.000 0.39 0.00 0.00 3.18
544 547 6.057321 TCACCTCCGTCCTAAATTAATTGT 57.943 37.500 0.39 0.00 0.00 2.71
545 548 6.346096 TCTCACCTCCGTCCTAAATTAATTG 58.654 40.000 0.39 0.00 0.00 2.32
546 549 6.555463 TCTCACCTCCGTCCTAAATTAATT 57.445 37.500 0.00 0.00 0.00 1.40
547 550 6.749036 ATCTCACCTCCGTCCTAAATTAAT 57.251 37.500 0.00 0.00 0.00 1.40
548 551 6.555463 AATCTCACCTCCGTCCTAAATTAA 57.445 37.500 0.00 0.00 0.00 1.40
549 552 6.346096 CAAATCTCACCTCCGTCCTAAATTA 58.654 40.000 0.00 0.00 0.00 1.40
550 553 5.186198 CAAATCTCACCTCCGTCCTAAATT 58.814 41.667 0.00 0.00 0.00 1.82
551 554 4.770795 CAAATCTCACCTCCGTCCTAAAT 58.229 43.478 0.00 0.00 0.00 1.40
552 555 3.618997 GCAAATCTCACCTCCGTCCTAAA 60.619 47.826 0.00 0.00 0.00 1.85
553 556 2.093658 GCAAATCTCACCTCCGTCCTAA 60.094 50.000 0.00 0.00 0.00 2.69
554 557 1.480954 GCAAATCTCACCTCCGTCCTA 59.519 52.381 0.00 0.00 0.00 2.94
555 558 0.250513 GCAAATCTCACCTCCGTCCT 59.749 55.000 0.00 0.00 0.00 3.85
556 559 0.744771 GGCAAATCTCACCTCCGTCC 60.745 60.000 0.00 0.00 0.00 4.79
557 560 0.250513 AGGCAAATCTCACCTCCGTC 59.749 55.000 0.00 0.00 0.00 4.79
558 561 1.482593 CTAGGCAAATCTCACCTCCGT 59.517 52.381 0.00 0.00 34.92 4.69
559 562 1.202580 CCTAGGCAAATCTCACCTCCG 60.203 57.143 0.00 0.00 34.92 4.63
560 563 2.119495 TCCTAGGCAAATCTCACCTCC 58.881 52.381 2.96 0.00 34.92 4.30
561 564 4.429854 AATCCTAGGCAAATCTCACCTC 57.570 45.455 2.96 0.00 34.92 3.85
562 565 5.370880 ACATAATCCTAGGCAAATCTCACCT 59.629 40.000 2.96 0.00 37.61 4.00
563 566 5.625150 ACATAATCCTAGGCAAATCTCACC 58.375 41.667 2.96 0.00 0.00 4.02
564 567 6.529220 AGACATAATCCTAGGCAAATCTCAC 58.471 40.000 2.96 0.00 0.00 3.51
565 568 6.753913 AGACATAATCCTAGGCAAATCTCA 57.246 37.500 2.96 0.00 0.00 3.27
566 569 6.072783 GCAAGACATAATCCTAGGCAAATCTC 60.073 42.308 2.96 0.00 0.00 2.75
567 570 5.767168 GCAAGACATAATCCTAGGCAAATCT 59.233 40.000 2.96 0.00 0.00 2.40
568 571 5.767168 AGCAAGACATAATCCTAGGCAAATC 59.233 40.000 2.96 0.00 0.00 2.17
569 572 5.699143 AGCAAGACATAATCCTAGGCAAAT 58.301 37.500 2.96 0.00 0.00 2.32
570 573 5.116084 AGCAAGACATAATCCTAGGCAAA 57.884 39.130 2.96 0.00 0.00 3.68
571 574 4.778213 AGCAAGACATAATCCTAGGCAA 57.222 40.909 2.96 0.00 0.00 4.52
572 575 4.284490 CCTAGCAAGACATAATCCTAGGCA 59.716 45.833 2.96 0.00 36.57 4.75
573 576 4.284746 ACCTAGCAAGACATAATCCTAGGC 59.715 45.833 2.96 0.00 43.52 3.93
574 577 6.426646 AACCTAGCAAGACATAATCCTAGG 57.573 41.667 0.82 0.82 44.64 3.02
577 580 9.700831 AAAATAAACCTAGCAAGACATAATCCT 57.299 29.630 0.00 0.00 0.00 3.24
578 581 9.736023 CAAAATAAACCTAGCAAGACATAATCC 57.264 33.333 0.00 0.00 0.00 3.01
583 586 7.761249 GCATTCAAAATAAACCTAGCAAGACAT 59.239 33.333 0.00 0.00 0.00 3.06
584 587 7.090173 GCATTCAAAATAAACCTAGCAAGACA 58.910 34.615 0.00 0.00 0.00 3.41
585 588 7.062255 GTGCATTCAAAATAAACCTAGCAAGAC 59.938 37.037 0.00 0.00 0.00 3.01
586 589 7.090173 GTGCATTCAAAATAAACCTAGCAAGA 58.910 34.615 0.00 0.00 0.00 3.02
587 590 6.033831 CGTGCATTCAAAATAAACCTAGCAAG 59.966 38.462 0.00 0.00 0.00 4.01
588 591 5.861251 CGTGCATTCAAAATAAACCTAGCAA 59.139 36.000 0.00 0.00 0.00 3.91
589 592 5.182190 TCGTGCATTCAAAATAAACCTAGCA 59.818 36.000 0.00 0.00 0.00 3.49
590 593 5.636837 TCGTGCATTCAAAATAAACCTAGC 58.363 37.500 0.00 0.00 0.00 3.42
591 594 6.197096 GCATCGTGCATTCAAAATAAACCTAG 59.803 38.462 0.00 0.00 44.26 3.02
592 595 6.033341 GCATCGTGCATTCAAAATAAACCTA 58.967 36.000 0.00 0.00 44.26 3.08
593 596 4.864247 GCATCGTGCATTCAAAATAAACCT 59.136 37.500 0.00 0.00 44.26 3.50
594 597 5.129901 GCATCGTGCATTCAAAATAAACC 57.870 39.130 0.00 0.00 44.26 3.27
608 611 1.094785 ATACCCAAACTGCATCGTGC 58.905 50.000 0.00 3.44 45.29 5.34
609 612 2.083774 ACATACCCAAACTGCATCGTG 58.916 47.619 0.00 0.00 0.00 4.35
610 613 2.290008 TGACATACCCAAACTGCATCGT 60.290 45.455 0.00 0.00 0.00 3.73
611 614 2.355197 TGACATACCCAAACTGCATCG 58.645 47.619 0.00 0.00 0.00 3.84
612 615 3.696051 ACATGACATACCCAAACTGCATC 59.304 43.478 0.00 0.00 0.00 3.91
613 616 3.700538 ACATGACATACCCAAACTGCAT 58.299 40.909 0.00 0.00 0.00 3.96
614 617 3.153369 ACATGACATACCCAAACTGCA 57.847 42.857 0.00 0.00 0.00 4.41
615 618 3.119495 GGAACATGACATACCCAAACTGC 60.119 47.826 0.00 0.00 0.00 4.40
616 619 4.078537 TGGAACATGACATACCCAAACTG 58.921 43.478 0.00 0.00 0.00 3.16
617 620 4.380843 TGGAACATGACATACCCAAACT 57.619 40.909 0.00 0.00 0.00 2.66
637 640 3.828451 ACAACTTCCTCCACCAATTCATG 59.172 43.478 0.00 0.00 0.00 3.07
638 641 4.082125 GACAACTTCCTCCACCAATTCAT 58.918 43.478 0.00 0.00 0.00 2.57
639 642 3.117701 TGACAACTTCCTCCACCAATTCA 60.118 43.478 0.00 0.00 0.00 2.57
640 643 3.486383 TGACAACTTCCTCCACCAATTC 58.514 45.455 0.00 0.00 0.00 2.17
658 661 1.666872 CCCCGGTCGTCAGTTTGAC 60.667 63.158 0.00 0.00 43.65 3.18
659 662 2.091102 GACCCCGGTCGTCAGTTTGA 62.091 60.000 12.76 0.00 35.30 2.69
660 663 1.666872 GACCCCGGTCGTCAGTTTG 60.667 63.158 12.76 0.00 35.30 2.93
661 664 2.739132 GACCCCGGTCGTCAGTTT 59.261 61.111 12.76 0.00 35.30 2.66
838 857 2.760385 GTGGGAGGGGAGGAGACG 60.760 72.222 0.00 0.00 0.00 4.18
899 918 0.545309 CTCCTGGTGGGTGGAAGAGA 60.545 60.000 0.00 0.00 36.25 3.10
900 919 0.545309 TCTCCTGGTGGGTGGAAGAG 60.545 60.000 0.00 0.00 36.25 2.85
901 920 0.104672 TTCTCCTGGTGGGTGGAAGA 60.105 55.000 0.00 0.00 36.25 2.87
903 922 0.476771 GTTTCTCCTGGTGGGTGGAA 59.523 55.000 0.00 0.00 36.25 3.53
904 923 0.696143 TGTTTCTCCTGGTGGGTGGA 60.696 55.000 0.00 0.00 36.25 4.02
905 924 0.184933 TTGTTTCTCCTGGTGGGTGG 59.815 55.000 0.00 0.00 36.25 4.61
906 925 1.142870 TCTTGTTTCTCCTGGTGGGTG 59.857 52.381 0.00 0.00 36.25 4.61
907 926 1.518367 TCTTGTTTCTCCTGGTGGGT 58.482 50.000 0.00 0.00 36.25 4.51
908 927 2.656947 TTCTTGTTTCTCCTGGTGGG 57.343 50.000 0.00 0.00 0.00 4.61
909 928 3.189287 CGATTTCTTGTTTCTCCTGGTGG 59.811 47.826 0.00 0.00 0.00 4.61
910 929 3.815401 ACGATTTCTTGTTTCTCCTGGTG 59.185 43.478 0.00 0.00 0.00 4.17
911 930 4.065789 GACGATTTCTTGTTTCTCCTGGT 58.934 43.478 0.00 0.00 0.00 4.00
912 931 3.123621 CGACGATTTCTTGTTTCTCCTGG 59.876 47.826 0.00 0.00 0.00 4.45
913 932 3.987868 TCGACGATTTCTTGTTTCTCCTG 59.012 43.478 0.00 0.00 0.00 3.86
914 933 3.988517 GTCGACGATTTCTTGTTTCTCCT 59.011 43.478 0.00 0.00 0.00 3.69
915 934 3.181543 CGTCGACGATTTCTTGTTTCTCC 60.182 47.826 33.35 0.00 43.02 3.71
916 935 3.718323 GCGTCGACGATTTCTTGTTTCTC 60.718 47.826 39.74 13.96 43.02 2.87
917 936 2.155155 GCGTCGACGATTTCTTGTTTCT 59.845 45.455 39.74 0.00 43.02 2.52
918 937 2.155155 AGCGTCGACGATTTCTTGTTTC 59.845 45.455 39.74 17.77 43.02 2.78
919 938 2.132762 AGCGTCGACGATTTCTTGTTT 58.867 42.857 39.74 9.22 43.02 2.83
922 941 0.640768 GGAGCGTCGACGATTTCTTG 59.359 55.000 39.74 10.32 43.02 3.02
952 971 3.385469 TGAGCAGTCAGAGGCAGG 58.615 61.111 0.00 0.00 0.00 4.85
1059 1084 2.517919 GGATGGGTGGATGGAGGC 59.482 66.667 0.00 0.00 0.00 4.70
1091 1128 2.186826 GGAAACGGATGGCGATGGG 61.187 63.158 0.00 0.00 0.00 4.00
1093 1130 2.534019 CGGGAAACGGATGGCGATG 61.534 63.158 0.00 0.00 39.42 3.84
1109 1146 1.089920 CAGCAAGGACAAGGAATCGG 58.910 55.000 0.00 0.00 0.00 4.18
1110 1147 1.734465 GACAGCAAGGACAAGGAATCG 59.266 52.381 0.00 0.00 0.00 3.34
1120 1157 2.306805 ACTGATCCATTGACAGCAAGGA 59.693 45.455 0.00 0.00 38.00 3.36
1121 1158 2.681848 GACTGATCCATTGACAGCAAGG 59.318 50.000 0.00 0.00 37.45 3.61
1122 1159 2.350804 CGACTGATCCATTGACAGCAAG 59.649 50.000 0.00 0.00 37.45 4.01
1393 1459 2.016165 CGATTCATCGCCGCATCGA 61.016 57.895 4.48 0.00 43.84 3.59
1406 1476 4.523813 ACGTTTTGATTCACACACGATTC 58.476 39.130 14.95 0.00 38.23 2.52
1407 1477 4.545823 ACGTTTTGATTCACACACGATT 57.454 36.364 14.95 0.00 38.23 3.34
1410 1480 6.726035 AAAATACGTTTTGATTCACACACG 57.274 33.333 0.00 8.99 39.72 4.49
1442 1514 7.040755 ACACGTTAGGTCAATCAAATCAAATCA 60.041 33.333 0.00 0.00 0.00 2.57
1443 1515 7.271223 CACACGTTAGGTCAATCAAATCAAATC 59.729 37.037 0.00 0.00 0.00 2.17
1444 1516 7.083858 CACACGTTAGGTCAATCAAATCAAAT 58.916 34.615 0.00 0.00 0.00 2.32
1445 1517 6.038825 ACACACGTTAGGTCAATCAAATCAAA 59.961 34.615 0.00 0.00 0.00 2.69
1446 1518 5.529430 ACACACGTTAGGTCAATCAAATCAA 59.471 36.000 0.00 0.00 0.00 2.57
1447 1519 5.060506 ACACACGTTAGGTCAATCAAATCA 58.939 37.500 0.00 0.00 0.00 2.57
1448 1520 5.607119 ACACACGTTAGGTCAATCAAATC 57.393 39.130 0.00 0.00 0.00 2.17
1449 1521 6.262273 AGAAACACACGTTAGGTCAATCAAAT 59.738 34.615 0.00 0.00 33.99 2.32
1450 1522 5.587043 AGAAACACACGTTAGGTCAATCAAA 59.413 36.000 0.00 0.00 33.99 2.69
1451 1523 5.007234 CAGAAACACACGTTAGGTCAATCAA 59.993 40.000 0.00 0.00 33.99 2.57
1505 1579 2.879026 CCATCTGCAGATCCATCAACAG 59.121 50.000 26.44 11.59 34.94 3.16
1648 1726 3.685756 TGCAACTTAGGTATACGGCAAAC 59.314 43.478 0.00 0.00 0.00 2.93
1649 1727 3.685756 GTGCAACTTAGGTATACGGCAAA 59.314 43.478 0.00 0.00 0.00 3.68
1706 1789 3.691609 CAGGATCTTAGTTGGTTTCCTGC 59.308 47.826 4.02 0.00 42.55 4.85
1770 1853 2.181426 TGGCTCGTTTTCGTTTGTTG 57.819 45.000 0.00 0.00 44.46 3.33
1775 1858 2.532235 GGTTTTTGGCTCGTTTTCGTT 58.468 42.857 0.00 0.00 44.46 3.85
1777 1860 1.066454 AGGGTTTTTGGCTCGTTTTCG 59.934 47.619 0.00 0.00 45.64 3.46
1812 1895 8.918961 AACTTAGCGATCTAGTGCATATATTC 57.081 34.615 0.00 0.00 0.00 1.75
1857 1958 0.036732 TTTCTGTGTGGCTGGGCTAG 59.963 55.000 0.00 0.00 0.00 3.42
1863 1964 4.083110 CCTGACTATTTTTCTGTGTGGCTG 60.083 45.833 0.00 0.00 0.00 4.85
1996 2098 4.428294 TTAAGCGGCTCTAGACTAGGTA 57.572 45.455 1.45 0.00 0.00 3.08
1997 2099 3.294038 TTAAGCGGCTCTAGACTAGGT 57.706 47.619 1.45 0.00 0.00 3.08
1998 2100 4.857509 ATTTAAGCGGCTCTAGACTAGG 57.142 45.455 1.45 2.13 0.00 3.02
2093 2197 4.772624 AGTCATAGGCACAGAAGACAAGTA 59.227 41.667 0.00 0.00 0.00 2.24
2136 2240 3.929948 CGCGCCAGCTCCGATTTC 61.930 66.667 0.00 0.00 42.32 2.17
2547 2651 2.022129 GTGACCGTGGTGCTCGAAG 61.022 63.158 0.00 0.00 0.00 3.79
2749 2853 0.395862 TGGATGAGGACGAGGAGGAC 60.396 60.000 0.00 0.00 0.00 3.85
2752 2856 1.697284 TCATGGATGAGGACGAGGAG 58.303 55.000 0.00 0.00 32.11 3.69
2785 2889 6.647067 CGGCAGAAACATTTAATTAAACCCAA 59.353 34.615 12.74 0.00 0.00 4.12
3104 3230 3.121030 CGCGCCAGGAAGTTGGAG 61.121 66.667 0.00 0.00 40.87 3.86
3683 3815 6.012745 ACCAAAAGAGAATGCCAAGACTAAT 58.987 36.000 0.00 0.00 0.00 1.73
4084 4225 4.402474 AGTTGCTTTACACTTTGCCTTCTT 59.598 37.500 0.00 0.00 0.00 2.52
4086 4227 4.307443 AGTTGCTTTACACTTTGCCTTC 57.693 40.909 0.00 0.00 0.00 3.46
4092 4262 4.640201 TCTGCTGAAGTTGCTTTACACTTT 59.360 37.500 0.00 0.00 0.00 2.66
4143 4313 1.863267 CTGTAGATAGCCTGCAGTGC 58.137 55.000 13.81 15.45 46.44 4.40
4179 4350 2.128035 CGTTGCTTCTCTGTCGAAACT 58.872 47.619 0.00 0.00 0.00 2.66
4180 4351 2.124903 TCGTTGCTTCTCTGTCGAAAC 58.875 47.619 0.00 0.00 0.00 2.78
4188 4359 3.679389 ACCATGAAATCGTTGCTTCTCT 58.321 40.909 0.00 0.00 0.00 3.10
4220 4391 9.626045 GGAACTCTTACCAAAATTTGATGTAAG 57.374 33.333 19.61 19.61 37.05 2.34
4231 4402 9.498176 GTTATTAGTCAGGAACTCTTACCAAAA 57.502 33.333 0.00 0.00 39.55 2.44
4332 4504 4.621991 CATGGGAGTAGGAAATAGTCGTG 58.378 47.826 0.00 0.00 35.01 4.35
4335 4507 4.689612 TGCATGGGAGTAGGAAATAGTC 57.310 45.455 0.00 0.00 33.63 2.59
4355 4531 2.151924 CGTGACGTCATCGCTTATCATG 59.848 50.000 23.12 0.00 41.18 3.07
4356 4532 2.385315 CGTGACGTCATCGCTTATCAT 58.615 47.619 23.12 0.00 41.18 2.45
4370 4547 2.404029 CGCTATAAATACAGGCGTGACG 59.596 50.000 14.38 0.00 40.78 4.35
4378 4555 6.091441 GGGAGATTCAAGCGCTATAAATACAG 59.909 42.308 12.05 0.00 0.00 2.74
4478 4655 8.181573 AGTTTGTAATCACCGCATACTATTTTG 58.818 33.333 0.00 0.00 0.00 2.44
4479 4656 8.181573 CAGTTTGTAATCACCGCATACTATTTT 58.818 33.333 0.00 0.00 0.00 1.82
4499 4677 7.148507 CCTCTGTTATTGTTCTAGAGCAGTTTG 60.149 40.741 9.79 1.20 34.88 2.93
4511 4689 3.713826 TCACCCCCTCTGTTATTGTTC 57.286 47.619 0.00 0.00 0.00 3.18
4515 4693 3.435601 GCATGATCACCCCCTCTGTTATT 60.436 47.826 0.00 0.00 0.00 1.40
4519 4697 1.918253 GCATGATCACCCCCTCTGT 59.082 57.895 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.