Multiple sequence alignment - TraesCS1B01G433900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G433900 chr1B 100.000 1488 0 0 807 2294 658504122 658502635 0.000000e+00 2748
1 TraesCS1B01G433900 chr1B 100.000 442 0 0 1 442 658504928 658504487 0.000000e+00 817
2 TraesCS1B01G433900 chr1B 97.291 443 11 1 1 442 235896902 235897344 0.000000e+00 750
3 TraesCS1B01G433900 chr7A 96.040 1490 56 3 807 2294 707844400 707845888 0.000000e+00 2422
4 TraesCS1B01G433900 chr7A 95.503 1490 64 3 807 2294 650324550 650323062 0.000000e+00 2377
5 TraesCS1B01G433900 chr7A 95.299 1489 67 3 807 2294 650260734 650259248 0.000000e+00 2359
6 TraesCS1B01G433900 chr7A 93.807 436 17 6 1 433 622694687 622694259 0.000000e+00 647
7 TraesCS1B01G433900 chr2A 96.070 1476 56 2 820 2294 23796207 23797681 0.000000e+00 2403
8 TraesCS1B01G433900 chr2A 95.452 1495 59 5 807 2294 600113424 600111932 0.000000e+00 2375
9 TraesCS1B01G433900 chr2A 95.540 1435 59 5 862 2294 571019198 571020629 0.000000e+00 2290
10 TraesCS1B01G433900 chr1A 95.769 1489 61 2 807 2294 531840041 531838554 0.000000e+00 2399
11 TraesCS1B01G433900 chr1A 95.372 1491 62 6 807 2293 380400822 380402309 0.000000e+00 2364
12 TraesCS1B01G433900 chr4A 94.213 1486 81 5 811 2294 382145490 382146972 0.000000e+00 2263
13 TraesCS1B01G433900 chrUn 97.011 435 11 1 1 433 24704636 24705070 0.000000e+00 730
14 TraesCS1B01G433900 chr3B 98.768 406 3 1 1 404 59099419 59099824 0.000000e+00 721
15 TraesCS1B01G433900 chr7B 95.485 443 19 1 1 442 544972215 544972657 0.000000e+00 706
16 TraesCS1B01G433900 chr7B 96.083 434 15 2 1 433 656625402 656624970 0.000000e+00 706
17 TraesCS1B01G433900 chr2D 94.931 434 18 2 1 433 251564262 251563832 0.000000e+00 676
18 TraesCS1B01G433900 chr5D 93.364 437 25 2 1 433 238950 238514 0.000000e+00 643
19 TraesCS1B01G433900 chr1D 93.349 436 26 3 1 433 65740032 65740467 1.920000e-180 641
20 TraesCS1B01G433900 chr2B 96.250 80 3 0 807 886 220433511 220433590 5.140000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G433900 chr1B 658502635 658504928 2293 True 1782.5 2748 100.000 1 2294 2 chr1B.!!$R1 2293
1 TraesCS1B01G433900 chr7A 707844400 707845888 1488 False 2422.0 2422 96.040 807 2294 1 chr7A.!!$F1 1487
2 TraesCS1B01G433900 chr7A 650323062 650324550 1488 True 2377.0 2377 95.503 807 2294 1 chr7A.!!$R3 1487
3 TraesCS1B01G433900 chr7A 650259248 650260734 1486 True 2359.0 2359 95.299 807 2294 1 chr7A.!!$R2 1487
4 TraesCS1B01G433900 chr2A 23796207 23797681 1474 False 2403.0 2403 96.070 820 2294 1 chr2A.!!$F1 1474
5 TraesCS1B01G433900 chr2A 600111932 600113424 1492 True 2375.0 2375 95.452 807 2294 1 chr2A.!!$R1 1487
6 TraesCS1B01G433900 chr2A 571019198 571020629 1431 False 2290.0 2290 95.540 862 2294 1 chr2A.!!$F2 1432
7 TraesCS1B01G433900 chr1A 531838554 531840041 1487 True 2399.0 2399 95.769 807 2294 1 chr1A.!!$R1 1487
8 TraesCS1B01G433900 chr1A 380400822 380402309 1487 False 2364.0 2364 95.372 807 2293 1 chr1A.!!$F1 1486
9 TraesCS1B01G433900 chr4A 382145490 382146972 1482 False 2263.0 2263 94.213 811 2294 1 chr4A.!!$F1 1483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.104934 ATCACCCCCTAAGCCGATCT 60.105 55.0 0.0 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1312 1314 0.041238 ACAAGAGGGAGACGGGATCA 59.959 55.0 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.781324 ACAAGTTGGTTATCATCCAGAAAAT 57.219 32.000 7.96 0.00 36.28 1.82
25 26 7.605449 ACAAGTTGGTTATCATCCAGAAAATG 58.395 34.615 7.96 0.00 36.28 2.32
26 27 7.233348 ACAAGTTGGTTATCATCCAGAAAATGT 59.767 33.333 7.96 0.00 36.28 2.71
27 28 7.781324 AGTTGGTTATCATCCAGAAAATGTT 57.219 32.000 0.00 0.00 36.28 2.71
28 29 7.605449 AGTTGGTTATCATCCAGAAAATGTTG 58.395 34.615 0.00 0.00 36.28 3.33
29 30 7.233348 AGTTGGTTATCATCCAGAAAATGTTGT 59.767 33.333 0.00 0.00 36.28 3.32
30 31 8.519526 GTTGGTTATCATCCAGAAAATGTTGTA 58.480 33.333 0.00 0.00 36.28 2.41
31 32 8.821686 TGGTTATCATCCAGAAAATGTTGTAT 57.178 30.769 0.00 0.00 0.00 2.29
32 33 9.913310 TGGTTATCATCCAGAAAATGTTGTATA 57.087 29.630 0.00 0.00 0.00 1.47
38 39 9.513906 TCATCCAGAAAATGTTGTATAACTTGA 57.486 29.630 3.89 0.00 37.68 3.02
39 40 9.778993 CATCCAGAAAATGTTGTATAACTTGAG 57.221 33.333 3.89 0.00 37.68 3.02
40 41 8.918202 TCCAGAAAATGTTGTATAACTTGAGT 57.082 30.769 3.89 0.00 37.68 3.41
41 42 8.783093 TCCAGAAAATGTTGTATAACTTGAGTG 58.217 33.333 3.89 0.00 37.68 3.51
42 43 8.783093 CCAGAAAATGTTGTATAACTTGAGTGA 58.217 33.333 3.89 0.00 37.68 3.41
68 69 5.359194 TTTTTAGTGGTGCCATTTTTGGA 57.641 34.783 0.00 0.00 0.00 3.53
69 70 5.359194 TTTTAGTGGTGCCATTTTTGGAA 57.641 34.783 0.00 0.00 0.00 3.53
70 71 5.359194 TTTAGTGGTGCCATTTTTGGAAA 57.641 34.783 0.00 0.00 0.00 3.13
71 72 3.922171 AGTGGTGCCATTTTTGGAAAA 57.078 38.095 0.00 0.00 0.00 2.29
72 73 4.227864 AGTGGTGCCATTTTTGGAAAAA 57.772 36.364 0.00 0.00 41.59 1.94
92 93 6.544038 AAAAATTATTGGCAGTTGCTTGAC 57.456 33.333 3.88 0.00 41.70 3.18
93 94 4.870123 AATTATTGGCAGTTGCTTGACA 57.130 36.364 3.88 0.00 41.70 3.58
97 98 3.540314 TTGGCAGTTGCTTGACAAATT 57.460 38.095 3.88 0.00 42.88 1.82
98 99 3.096489 TGGCAGTTGCTTGACAAATTC 57.904 42.857 3.88 0.00 40.82 2.17
99 100 2.224018 TGGCAGTTGCTTGACAAATTCC 60.224 45.455 3.88 0.00 39.66 3.01
100 101 2.407090 GCAGTTGCTTGACAAATTCCC 58.593 47.619 0.00 0.00 40.82 3.97
101 102 2.036346 GCAGTTGCTTGACAAATTCCCT 59.964 45.455 0.00 0.00 40.82 4.20
102 103 3.858503 GCAGTTGCTTGACAAATTCCCTC 60.859 47.826 0.00 0.00 40.82 4.30
103 104 3.571401 CAGTTGCTTGACAAATTCCCTCT 59.429 43.478 0.00 0.00 40.82 3.69
104 105 4.761739 CAGTTGCTTGACAAATTCCCTCTA 59.238 41.667 0.00 0.00 40.82 2.43
105 106 5.416952 CAGTTGCTTGACAAATTCCCTCTAT 59.583 40.000 0.00 0.00 40.82 1.98
106 107 6.012745 AGTTGCTTGACAAATTCCCTCTATT 58.987 36.000 0.00 0.00 40.82 1.73
107 108 6.494835 AGTTGCTTGACAAATTCCCTCTATTT 59.505 34.615 0.00 0.00 40.82 1.40
108 109 6.916360 TGCTTGACAAATTCCCTCTATTTT 57.084 33.333 0.00 0.00 0.00 1.82
109 110 7.301868 TGCTTGACAAATTCCCTCTATTTTT 57.698 32.000 0.00 0.00 0.00 1.94
110 111 8.415950 TGCTTGACAAATTCCCTCTATTTTTA 57.584 30.769 0.00 0.00 0.00 1.52
111 112 8.303876 TGCTTGACAAATTCCCTCTATTTTTAC 58.696 33.333 0.00 0.00 0.00 2.01
112 113 7.759886 GCTTGACAAATTCCCTCTATTTTTACC 59.240 37.037 0.00 0.00 0.00 2.85
113 114 8.713708 TTGACAAATTCCCTCTATTTTTACCA 57.286 30.769 0.00 0.00 0.00 3.25
114 115 8.117813 TGACAAATTCCCTCTATTTTTACCAC 57.882 34.615 0.00 0.00 0.00 4.16
115 116 7.947890 TGACAAATTCCCTCTATTTTTACCACT 59.052 33.333 0.00 0.00 0.00 4.00
116 117 8.721133 ACAAATTCCCTCTATTTTTACCACTT 57.279 30.769 0.00 0.00 0.00 3.16
117 118 9.816787 ACAAATTCCCTCTATTTTTACCACTTA 57.183 29.630 0.00 0.00 0.00 2.24
122 123 9.511272 TTCCCTCTATTTTTACCACTTAGAAAC 57.489 33.333 0.00 0.00 0.00 2.78
123 124 8.887393 TCCCTCTATTTTTACCACTTAGAAACT 58.113 33.333 0.00 0.00 0.00 2.66
154 155 7.959658 AATGATACATTTCTTGGACCAATCA 57.040 32.000 7.54 6.37 0.00 2.57
155 156 7.578310 ATGATACATTTCTTGGACCAATCAG 57.422 36.000 7.54 0.00 0.00 2.90
156 157 6.720309 TGATACATTTCTTGGACCAATCAGA 58.280 36.000 7.54 0.00 0.00 3.27
157 158 7.174413 TGATACATTTCTTGGACCAATCAGAA 58.826 34.615 7.54 5.15 0.00 3.02
158 159 5.972107 ACATTTCTTGGACCAATCAGAAG 57.028 39.130 7.54 0.30 0.00 2.85
159 160 4.768968 ACATTTCTTGGACCAATCAGAAGG 59.231 41.667 7.54 6.93 0.00 3.46
160 161 2.496899 TCTTGGACCAATCAGAAGGC 57.503 50.000 7.54 0.00 0.00 4.35
161 162 1.704628 TCTTGGACCAATCAGAAGGCA 59.295 47.619 7.54 0.00 0.00 4.75
162 163 2.089980 CTTGGACCAATCAGAAGGCAG 58.910 52.381 7.54 0.00 0.00 4.85
163 164 1.361204 TGGACCAATCAGAAGGCAGA 58.639 50.000 0.00 0.00 0.00 4.26
164 165 1.704628 TGGACCAATCAGAAGGCAGAA 59.295 47.619 0.00 0.00 0.00 3.02
165 166 2.087646 GGACCAATCAGAAGGCAGAAC 58.912 52.381 0.00 0.00 0.00 3.01
166 167 2.087646 GACCAATCAGAAGGCAGAACC 58.912 52.381 0.00 0.00 39.61 3.62
175 176 4.745116 GGCAGAACCTTCCTTCCC 57.255 61.111 0.00 0.00 34.51 3.97
176 177 1.767692 GGCAGAACCTTCCTTCCCA 59.232 57.895 0.00 0.00 34.51 4.37
177 178 0.609406 GGCAGAACCTTCCTTCCCAC 60.609 60.000 0.00 0.00 34.51 4.61
178 179 0.955919 GCAGAACCTTCCTTCCCACG 60.956 60.000 0.00 0.00 0.00 4.94
179 180 0.321653 CAGAACCTTCCTTCCCACGG 60.322 60.000 0.00 0.00 0.00 4.94
180 181 0.473117 AGAACCTTCCTTCCCACGGA 60.473 55.000 0.00 0.00 0.00 4.69
181 182 0.618981 GAACCTTCCTTCCCACGGAT 59.381 55.000 0.00 0.00 0.00 4.18
182 183 0.618981 AACCTTCCTTCCCACGGATC 59.381 55.000 0.00 0.00 0.00 3.36
183 184 0.546747 ACCTTCCTTCCCACGGATCA 60.547 55.000 0.00 0.00 0.00 2.92
184 185 0.107654 CCTTCCTTCCCACGGATCAC 60.108 60.000 0.00 0.00 0.00 3.06
185 186 0.107654 CTTCCTTCCCACGGATCACC 60.108 60.000 0.00 0.00 0.00 4.02
186 187 1.559065 TTCCTTCCCACGGATCACCC 61.559 60.000 0.00 0.00 0.00 4.61
187 188 2.590092 CTTCCCACGGATCACCCC 59.410 66.667 0.00 0.00 0.00 4.95
188 189 3.012722 TTCCCACGGATCACCCCC 61.013 66.667 0.00 0.00 0.00 5.40
189 190 3.572715 TTCCCACGGATCACCCCCT 62.573 63.158 0.00 0.00 0.00 4.79
190 191 2.041301 CCCACGGATCACCCCCTA 60.041 66.667 0.00 0.00 0.00 3.53
191 192 1.691337 CCCACGGATCACCCCCTAA 60.691 63.158 0.00 0.00 0.00 2.69
192 193 1.696097 CCCACGGATCACCCCCTAAG 61.696 65.000 0.00 0.00 0.00 2.18
193 194 1.146263 CACGGATCACCCCCTAAGC 59.854 63.158 0.00 0.00 0.00 3.09
194 195 2.070650 ACGGATCACCCCCTAAGCC 61.071 63.158 0.00 0.00 0.00 4.35
195 196 2.829592 GGATCACCCCCTAAGCCG 59.170 66.667 0.00 0.00 0.00 5.52
196 197 1.764854 GGATCACCCCCTAAGCCGA 60.765 63.158 0.00 0.00 0.00 5.54
197 198 1.128188 GGATCACCCCCTAAGCCGAT 61.128 60.000 0.00 0.00 0.00 4.18
198 199 0.321996 GATCACCCCCTAAGCCGATC 59.678 60.000 0.00 0.00 0.00 3.69
199 200 0.104934 ATCACCCCCTAAGCCGATCT 60.105 55.000 0.00 0.00 0.00 2.75
200 201 1.048724 TCACCCCCTAAGCCGATCTG 61.049 60.000 0.00 0.00 0.00 2.90
201 202 1.048724 CACCCCCTAAGCCGATCTGA 61.049 60.000 0.00 0.00 0.00 3.27
202 203 0.760945 ACCCCCTAAGCCGATCTGAG 60.761 60.000 0.00 0.00 0.00 3.35
203 204 1.369321 CCCCTAAGCCGATCTGAGC 59.631 63.158 0.00 0.00 0.00 4.26
204 205 1.369321 CCCTAAGCCGATCTGAGCC 59.631 63.158 0.00 0.00 0.00 4.70
205 206 1.006805 CCTAAGCCGATCTGAGCCG 60.007 63.158 0.00 0.00 0.00 5.52
206 207 1.736586 CTAAGCCGATCTGAGCCGT 59.263 57.895 0.00 0.00 0.00 5.68
207 208 0.318275 CTAAGCCGATCTGAGCCGTC 60.318 60.000 0.00 0.00 0.00 4.79
208 209 1.735376 TAAGCCGATCTGAGCCGTCC 61.735 60.000 0.00 0.00 0.00 4.79
209 210 3.838271 GCCGATCTGAGCCGTCCA 61.838 66.667 0.00 0.00 0.00 4.02
210 211 2.105128 CCGATCTGAGCCGTCCAC 59.895 66.667 0.00 0.00 0.00 4.02
211 212 2.710902 CCGATCTGAGCCGTCCACA 61.711 63.158 0.00 0.00 0.00 4.17
212 213 1.517257 CGATCTGAGCCGTCCACAC 60.517 63.158 0.00 0.00 0.00 3.82
213 214 1.153549 GATCTGAGCCGTCCACACC 60.154 63.158 0.00 0.00 0.00 4.16
214 215 1.888436 GATCTGAGCCGTCCACACCA 61.888 60.000 0.00 0.00 0.00 4.17
215 216 1.267574 ATCTGAGCCGTCCACACCAT 61.268 55.000 0.00 0.00 0.00 3.55
216 217 0.613572 TCTGAGCCGTCCACACCATA 60.614 55.000 0.00 0.00 0.00 2.74
217 218 0.460284 CTGAGCCGTCCACACCATAC 60.460 60.000 0.00 0.00 0.00 2.39
218 219 1.188871 TGAGCCGTCCACACCATACA 61.189 55.000 0.00 0.00 0.00 2.29
219 220 0.460284 GAGCCGTCCACACCATACAG 60.460 60.000 0.00 0.00 0.00 2.74
220 221 0.902984 AGCCGTCCACACCATACAGA 60.903 55.000 0.00 0.00 0.00 3.41
221 222 0.178068 GCCGTCCACACCATACAGAT 59.822 55.000 0.00 0.00 0.00 2.90
222 223 1.806623 GCCGTCCACACCATACAGATC 60.807 57.143 0.00 0.00 0.00 2.75
223 224 1.202533 CCGTCCACACCATACAGATCC 60.203 57.143 0.00 0.00 0.00 3.36
224 225 1.480545 CGTCCACACCATACAGATCCA 59.519 52.381 0.00 0.00 0.00 3.41
225 226 2.093711 CGTCCACACCATACAGATCCAA 60.094 50.000 0.00 0.00 0.00 3.53
226 227 3.270877 GTCCACACCATACAGATCCAAC 58.729 50.000 0.00 0.00 0.00 3.77
227 228 2.093711 TCCACACCATACAGATCCAACG 60.094 50.000 0.00 0.00 0.00 4.10
228 229 2.354704 CCACACCATACAGATCCAACGT 60.355 50.000 0.00 0.00 0.00 3.99
229 230 2.930040 CACACCATACAGATCCAACGTC 59.070 50.000 0.00 0.00 0.00 4.34
230 231 2.832129 ACACCATACAGATCCAACGTCT 59.168 45.455 0.00 0.00 0.00 4.18
231 232 3.119101 ACACCATACAGATCCAACGTCTC 60.119 47.826 0.00 0.00 0.00 3.36
232 233 2.431057 ACCATACAGATCCAACGTCTCC 59.569 50.000 0.00 0.00 0.00 3.71
233 234 2.695666 CCATACAGATCCAACGTCTCCT 59.304 50.000 0.00 0.00 0.00 3.69
234 235 3.889538 CCATACAGATCCAACGTCTCCTA 59.110 47.826 0.00 0.00 0.00 2.94
235 236 4.341235 CCATACAGATCCAACGTCTCCTAA 59.659 45.833 0.00 0.00 0.00 2.69
236 237 5.163447 CCATACAGATCCAACGTCTCCTAAA 60.163 44.000 0.00 0.00 0.00 1.85
237 238 4.189639 ACAGATCCAACGTCTCCTAAAC 57.810 45.455 0.00 0.00 0.00 2.01
238 239 3.179830 CAGATCCAACGTCTCCTAAACG 58.820 50.000 0.00 0.00 45.37 3.60
239 240 1.925185 GATCCAACGTCTCCTAAACGC 59.075 52.381 0.00 0.00 43.76 4.84
240 241 0.675083 TCCAACGTCTCCTAAACGCA 59.325 50.000 0.00 0.00 43.76 5.24
241 242 0.788391 CCAACGTCTCCTAAACGCAC 59.212 55.000 0.00 0.00 43.76 5.34
242 243 0.433492 CAACGTCTCCTAAACGCACG 59.567 55.000 0.00 0.00 43.76 5.34
243 244 1.280206 AACGTCTCCTAAACGCACGC 61.280 55.000 0.00 0.00 43.76 5.34
244 245 1.443872 CGTCTCCTAAACGCACGCT 60.444 57.895 0.00 0.00 32.84 5.07
245 246 1.674611 CGTCTCCTAAACGCACGCTG 61.675 60.000 0.00 0.00 32.84 5.18
246 247 1.080093 TCTCCTAAACGCACGCTGG 60.080 57.895 0.00 0.00 0.00 4.85
247 248 2.740714 CTCCTAAACGCACGCTGGC 61.741 63.158 0.00 0.00 0.00 4.85
248 249 3.799755 CCTAAACGCACGCTGGCC 61.800 66.667 0.00 0.00 0.00 5.36
249 250 3.047280 CTAAACGCACGCTGGCCA 61.047 61.111 4.71 4.71 0.00 5.36
250 251 2.592001 TAAACGCACGCTGGCCAA 60.592 55.556 7.01 0.00 0.00 4.52
251 252 2.780149 CTAAACGCACGCTGGCCAAC 62.780 60.000 7.01 0.00 0.00 3.77
262 263 1.228737 TGGCCAACCAAACCCTAGC 60.229 57.895 0.61 0.00 45.37 3.42
263 264 1.228737 GGCCAACCAAACCCTAGCA 60.229 57.895 0.00 0.00 35.26 3.49
264 265 0.614697 GGCCAACCAAACCCTAGCAT 60.615 55.000 0.00 0.00 35.26 3.79
265 266 0.817654 GCCAACCAAACCCTAGCATC 59.182 55.000 0.00 0.00 0.00 3.91
266 267 1.616994 GCCAACCAAACCCTAGCATCT 60.617 52.381 0.00 0.00 0.00 2.90
267 268 2.807676 CCAACCAAACCCTAGCATCTT 58.192 47.619 0.00 0.00 0.00 2.40
268 269 2.493278 CCAACCAAACCCTAGCATCTTG 59.507 50.000 0.00 0.00 0.00 3.02
269 270 1.839424 ACCAAACCCTAGCATCTTGC 58.161 50.000 0.00 0.00 45.46 4.01
279 280 1.505353 GCATCTTGCAGCACACTCC 59.495 57.895 0.00 0.00 44.26 3.85
280 281 1.930908 GCATCTTGCAGCACACTCCC 61.931 60.000 0.00 0.00 44.26 4.30
281 282 1.001641 ATCTTGCAGCACACTCCCC 60.002 57.895 0.00 0.00 0.00 4.81
282 283 1.495579 ATCTTGCAGCACACTCCCCT 61.496 55.000 0.00 0.00 0.00 4.79
283 284 1.673665 CTTGCAGCACACTCCCCTC 60.674 63.158 0.00 0.00 0.00 4.30
284 285 3.196207 TTGCAGCACACTCCCCTCC 62.196 63.158 0.00 0.00 0.00 4.30
285 286 4.416738 GCAGCACACTCCCCTCCC 62.417 72.222 0.00 0.00 0.00 4.30
286 287 2.608988 CAGCACACTCCCCTCCCT 60.609 66.667 0.00 0.00 0.00 4.20
287 288 2.284995 AGCACACTCCCCTCCCTC 60.285 66.667 0.00 0.00 0.00 4.30
288 289 2.284995 GCACACTCCCCTCCCTCT 60.285 66.667 0.00 0.00 0.00 3.69
289 290 2.363172 GCACACTCCCCTCCCTCTC 61.363 68.421 0.00 0.00 0.00 3.20
290 291 1.687493 CACACTCCCCTCCCTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
291 292 2.041405 CACTCCCCTCCCTCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
292 293 2.204705 ACTCCCCTCCCTCTCCCT 60.205 66.667 0.00 0.00 0.00 4.20
293 294 2.329399 ACTCCCCTCCCTCTCCCTC 61.329 68.421 0.00 0.00 0.00 4.30
294 295 2.018086 CTCCCCTCCCTCTCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
295 296 2.015726 TCCCCTCCCTCTCCCTCTC 61.016 68.421 0.00 0.00 0.00 3.20
296 297 2.612251 CCCTCCCTCTCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
297 298 2.612251 CCTCCCTCTCCCTCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
298 299 2.612251 CTCCCTCTCCCTCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
299 300 3.430497 TCCCTCTCCCTCTCCCCG 61.430 72.222 0.00 0.00 0.00 5.73
300 301 3.430497 CCCTCTCCCTCTCCCCGA 61.430 72.222 0.00 0.00 0.00 5.14
301 302 2.123640 CCTCTCCCTCTCCCCGAC 60.124 72.222 0.00 0.00 0.00 4.79
302 303 2.123640 CTCTCCCTCTCCCCGACC 60.124 72.222 0.00 0.00 0.00 4.79
303 304 3.742248 CTCTCCCTCTCCCCGACCC 62.742 73.684 0.00 0.00 0.00 4.46
304 305 4.075793 CTCCCTCTCCCCGACCCA 62.076 72.222 0.00 0.00 0.00 4.51
305 306 3.364964 TCCCTCTCCCCGACCCAT 61.365 66.667 0.00 0.00 0.00 4.00
306 307 3.164269 CCCTCTCCCCGACCCATG 61.164 72.222 0.00 0.00 0.00 3.66
307 308 3.866582 CCTCTCCCCGACCCATGC 61.867 72.222 0.00 0.00 0.00 4.06
308 309 4.227134 CTCTCCCCGACCCATGCG 62.227 72.222 0.00 0.00 0.00 4.73
332 333 4.862823 CCTCCCTCTCCCCGACCC 62.863 77.778 0.00 0.00 0.00 4.46
333 334 4.075793 CTCCCTCTCCCCGACCCA 62.076 72.222 0.00 0.00 0.00 4.51
334 335 4.075793 TCCCTCTCCCCGACCCAG 62.076 72.222 0.00 0.00 0.00 4.45
335 336 4.075793 CCCTCTCCCCGACCCAGA 62.076 72.222 0.00 0.00 0.00 3.86
336 337 2.283809 CCTCTCCCCGACCCAGAT 59.716 66.667 0.00 0.00 0.00 2.90
337 338 1.834822 CCTCTCCCCGACCCAGATC 60.835 68.421 0.00 0.00 0.00 2.75
338 339 1.231641 CTCTCCCCGACCCAGATCT 59.768 63.158 0.00 0.00 0.00 2.75
339 340 0.825840 CTCTCCCCGACCCAGATCTC 60.826 65.000 0.00 0.00 0.00 2.75
340 341 1.834822 CTCCCCGACCCAGATCTCC 60.835 68.421 0.00 0.00 0.00 3.71
341 342 2.844839 CCCCGACCCAGATCTCCC 60.845 72.222 0.00 0.00 0.00 4.30
342 343 2.283809 CCCGACCCAGATCTCCCT 59.716 66.667 0.00 0.00 0.00 4.20
343 344 1.834822 CCCGACCCAGATCTCCCTC 60.835 68.421 0.00 0.00 0.00 4.30
344 345 1.834822 CCGACCCAGATCTCCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
345 346 1.834822 CGACCCAGATCTCCCTCCC 60.835 68.421 0.00 0.00 0.00 4.30
346 347 1.460497 GACCCAGATCTCCCTCCCC 60.460 68.421 0.00 0.00 0.00 4.81
347 348 2.525381 CCCAGATCTCCCTCCCCG 60.525 72.222 0.00 0.00 0.00 5.73
348 349 2.609339 CCAGATCTCCCTCCCCGA 59.391 66.667 0.00 0.00 0.00 5.14
349 350 1.834822 CCAGATCTCCCTCCCCGAC 60.835 68.421 0.00 0.00 0.00 4.79
350 351 1.834822 CAGATCTCCCTCCCCGACC 60.835 68.421 0.00 0.00 0.00 4.79
351 352 2.524640 GATCTCCCTCCCCGACCC 60.525 72.222 0.00 0.00 0.00 4.46
352 353 3.364964 ATCTCCCTCCCCGACCCA 61.365 66.667 0.00 0.00 0.00 4.51
353 354 3.396822 ATCTCCCTCCCCGACCCAG 62.397 68.421 0.00 0.00 0.00 4.45
354 355 4.075793 CTCCCTCCCCGACCCAGA 62.076 72.222 0.00 0.00 0.00 3.86
355 356 4.393778 TCCCTCCCCGACCCAGAC 62.394 72.222 0.00 0.00 0.00 3.51
357 358 4.400251 CCTCCCCGACCCAGACCT 62.400 72.222 0.00 0.00 0.00 3.85
358 359 2.760385 CTCCCCGACCCAGACCTC 60.760 72.222 0.00 0.00 0.00 3.85
359 360 4.393778 TCCCCGACCCAGACCTCC 62.394 72.222 0.00 0.00 0.00 4.30
361 362 4.400251 CCCGACCCAGACCTCCCT 62.400 72.222 0.00 0.00 0.00 4.20
362 363 2.760385 CCGACCCAGACCTCCCTC 60.760 72.222 0.00 0.00 0.00 4.30
363 364 2.360980 CGACCCAGACCTCCCTCT 59.639 66.667 0.00 0.00 0.00 3.69
364 365 1.755008 CGACCCAGACCTCCCTCTC 60.755 68.421 0.00 0.00 0.00 3.20
365 366 1.382009 GACCCAGACCTCCCTCTCC 60.382 68.421 0.00 0.00 0.00 3.71
366 367 2.443016 CCCAGACCTCCCTCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
367 368 3.151022 CCAGACCTCCCTCTCCGC 61.151 72.222 0.00 0.00 0.00 5.54
368 369 3.151022 CAGACCTCCCTCTCCGCC 61.151 72.222 0.00 0.00 0.00 6.13
369 370 4.824515 AGACCTCCCTCTCCGCCG 62.825 72.222 0.00 0.00 0.00 6.46
376 377 4.452733 CCTCTCCGCCGTCCCAAC 62.453 72.222 0.00 0.00 0.00 3.77
377 378 3.382832 CTCTCCGCCGTCCCAACT 61.383 66.667 0.00 0.00 0.00 3.16
378 379 3.358076 CTCTCCGCCGTCCCAACTC 62.358 68.421 0.00 0.00 0.00 3.01
379 380 4.452733 CTCCGCCGTCCCAACTCC 62.453 72.222 0.00 0.00 0.00 3.85
381 382 3.072468 CCGCCGTCCCAACTCCTA 61.072 66.667 0.00 0.00 0.00 2.94
382 383 2.183555 CGCCGTCCCAACTCCTAC 59.816 66.667 0.00 0.00 0.00 3.18
383 384 2.582978 GCCGTCCCAACTCCTACC 59.417 66.667 0.00 0.00 0.00 3.18
384 385 3.027675 GCCGTCCCAACTCCTACCC 62.028 68.421 0.00 0.00 0.00 3.69
385 386 2.364780 CCGTCCCAACTCCTACCCC 61.365 68.421 0.00 0.00 0.00 4.95
386 387 2.718073 CGTCCCAACTCCTACCCCG 61.718 68.421 0.00 0.00 0.00 5.73
387 388 2.686106 TCCCAACTCCTACCCCGC 60.686 66.667 0.00 0.00 0.00 6.13
388 389 3.793888 CCCAACTCCTACCCCGCC 61.794 72.222 0.00 0.00 0.00 6.13
389 390 4.157120 CCAACTCCTACCCCGCCG 62.157 72.222 0.00 0.00 0.00 6.46
390 391 4.832608 CAACTCCTACCCCGCCGC 62.833 72.222 0.00 0.00 0.00 6.53
420 421 4.687215 AAGCGCCGCTGCTCTTGA 62.687 61.111 14.52 0.00 46.60 3.02
423 424 4.749310 CGCCGCTGCTCTTGACCT 62.749 66.667 0.00 0.00 34.43 3.85
424 425 3.123620 GCCGCTGCTCTTGACCTG 61.124 66.667 0.00 0.00 33.53 4.00
425 426 3.123620 CCGCTGCTCTTGACCTGC 61.124 66.667 0.00 0.00 0.00 4.85
426 427 2.357881 CGCTGCTCTTGACCTGCA 60.358 61.111 0.00 0.00 35.30 4.41
427 428 1.962822 CGCTGCTCTTGACCTGCAA 60.963 57.895 0.00 0.00 36.22 4.08
428 429 1.578423 GCTGCTCTTGACCTGCAAC 59.422 57.895 0.00 0.00 36.22 4.17
429 430 1.864862 CTGCTCTTGACCTGCAACG 59.135 57.895 0.00 0.00 36.22 4.10
430 431 0.601046 CTGCTCTTGACCTGCAACGA 60.601 55.000 0.00 0.00 36.22 3.85
431 432 0.880278 TGCTCTTGACCTGCAACGAC 60.880 55.000 0.00 0.00 33.48 4.34
432 433 1.569479 GCTCTTGACCTGCAACGACC 61.569 60.000 0.00 0.00 31.96 4.79
433 434 0.249868 CTCTTGACCTGCAACGACCA 60.250 55.000 0.00 0.00 31.96 4.02
434 435 0.179234 TCTTGACCTGCAACGACCAA 59.821 50.000 0.00 0.00 31.96 3.67
435 436 0.307760 CTTGACCTGCAACGACCAAC 59.692 55.000 0.00 0.00 31.96 3.77
437 438 1.593209 GACCTGCAACGACCAACGA 60.593 57.895 0.00 0.00 45.77 3.85
438 439 1.828331 GACCTGCAACGACCAACGAC 61.828 60.000 0.00 0.00 45.77 4.34
439 440 2.544359 CTGCAACGACCAACGACG 59.456 61.111 0.00 0.00 45.77 5.12
440 441 1.947146 CTGCAACGACCAACGACGA 60.947 57.895 0.00 0.00 45.77 4.20
441 442 2.142418 CTGCAACGACCAACGACGAC 62.142 60.000 0.00 0.00 45.77 4.34
939 941 3.090532 CCCCCTTCCTTCCCCTCG 61.091 72.222 0.00 0.00 0.00 4.63
979 981 0.107654 TCGTCGGCTCAGAGATCTCA 60.108 55.000 24.39 4.01 0.00 3.27
1008 1010 3.264897 GTAGCAGCCATGGACGCG 61.265 66.667 18.40 3.53 0.00 6.01
1083 1085 4.962836 AAGCGCTGCCACAAGCCT 62.963 61.111 12.58 0.00 42.71 4.58
1171 1173 1.107114 AGATCTGACGCTGATTCGGT 58.893 50.000 0.00 0.00 0.00 4.69
1282 1284 3.009026 CCCATCAACAACATCATCGTCA 58.991 45.455 0.00 0.00 0.00 4.35
1543 1547 1.151699 TGGGGAACTGGGGTCATGA 60.152 57.895 0.00 0.00 0.00 3.07
1592 1597 0.182775 GACGAATTGGGGGCATAGGT 59.817 55.000 0.00 0.00 0.00 3.08
1662 1667 2.154462 GCTGTTTCTGCACATACCACT 58.846 47.619 0.00 0.00 0.00 4.00
1760 1765 0.378257 CCATGGTTCGTGCTATGTGC 59.622 55.000 2.57 0.00 43.25 4.57
1872 1878 8.364129 TGGCAAGCTTTTGTAAAATAAGAAAG 57.636 30.769 0.00 0.00 0.00 2.62
1953 1959 1.968017 CCTGTGTTCACGCATGGCT 60.968 57.895 0.00 0.00 35.63 4.75
2093 2100 7.356680 TCCAATCCATTTCTTAGAATCCATGT 58.643 34.615 0.00 0.00 0.00 3.21
2094 2101 7.503566 TCCAATCCATTTCTTAGAATCCATGTC 59.496 37.037 0.00 0.00 0.00 3.06
2165 2177 2.171840 GGCTGACCAGTCTGTTCTAGA 58.828 52.381 0.00 0.00 35.26 2.43
2180 2192 6.014242 TCTGTTCTAGATGTTTCATGTGGTCT 60.014 38.462 0.00 0.00 0.00 3.85
2233 2245 7.112452 TCTTTGCTAGCTGATGTCAATAGTA 57.888 36.000 17.23 0.00 0.00 1.82
2282 2294 6.479006 TCATATATGAATGCTCTTTCTGGGG 58.521 40.000 13.12 0.00 33.08 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.233348 ACATTTTCTGGATGATAACCAACTTGT 59.767 33.333 0.00 0.00 36.95 3.16
1 2 7.605449 ACATTTTCTGGATGATAACCAACTTG 58.395 34.615 0.00 0.00 36.95 3.16
2 3 7.781324 ACATTTTCTGGATGATAACCAACTT 57.219 32.000 0.00 0.00 36.95 2.66
3 4 7.233348 ACAACATTTTCTGGATGATAACCAACT 59.767 33.333 0.00 0.00 36.95 3.16
4 5 7.378181 ACAACATTTTCTGGATGATAACCAAC 58.622 34.615 0.00 0.00 36.95 3.77
5 6 7.537596 ACAACATTTTCTGGATGATAACCAA 57.462 32.000 0.00 0.00 36.95 3.67
6 7 8.821686 ATACAACATTTTCTGGATGATAACCA 57.178 30.769 0.00 0.00 35.96 3.67
12 13 9.513906 TCAAGTTATACAACATTTTCTGGATGA 57.486 29.630 0.00 0.00 37.10 2.92
13 14 9.778993 CTCAAGTTATACAACATTTTCTGGATG 57.221 33.333 0.00 0.00 37.10 3.51
14 15 9.520515 ACTCAAGTTATACAACATTTTCTGGAT 57.479 29.630 0.00 0.00 37.10 3.41
15 16 8.783093 CACTCAAGTTATACAACATTTTCTGGA 58.217 33.333 0.00 0.00 37.10 3.86
16 17 8.783093 TCACTCAAGTTATACAACATTTTCTGG 58.217 33.333 0.00 0.00 37.10 3.86
46 47 5.359194 TCCAAAAATGGCACCACTAAAAA 57.641 34.783 0.00 0.00 0.00 1.94
47 48 5.359194 TTCCAAAAATGGCACCACTAAAA 57.641 34.783 0.00 0.00 0.00 1.52
48 49 5.359194 TTTCCAAAAATGGCACCACTAAA 57.641 34.783 0.00 0.00 0.00 1.85
49 50 5.359194 TTTTCCAAAAATGGCACCACTAA 57.641 34.783 0.00 0.00 0.00 2.24
50 51 5.359194 TTTTTCCAAAAATGGCACCACTA 57.641 34.783 0.00 0.00 33.29 2.74
51 52 3.922171 TTTTCCAAAAATGGCACCACT 57.078 38.095 0.00 0.00 0.00 4.00
69 70 6.054295 TGTCAAGCAACTGCCAATAATTTTT 58.946 32.000 0.00 0.00 43.38 1.94
70 71 5.609423 TGTCAAGCAACTGCCAATAATTTT 58.391 33.333 0.00 0.00 43.38 1.82
71 72 5.212532 TGTCAAGCAACTGCCAATAATTT 57.787 34.783 0.00 0.00 43.38 1.82
72 73 4.870123 TGTCAAGCAACTGCCAATAATT 57.130 36.364 0.00 0.00 43.38 1.40
73 74 4.870123 TTGTCAAGCAACTGCCAATAAT 57.130 36.364 0.00 0.00 43.38 1.28
74 75 4.662468 TTTGTCAAGCAACTGCCAATAA 57.338 36.364 0.00 0.00 43.38 1.40
75 76 4.870123 ATTTGTCAAGCAACTGCCAATA 57.130 36.364 0.00 0.00 43.38 1.90
76 77 3.756933 ATTTGTCAAGCAACTGCCAAT 57.243 38.095 0.00 0.00 43.38 3.16
77 78 3.456280 GAATTTGTCAAGCAACTGCCAA 58.544 40.909 0.00 0.00 43.38 4.52
78 79 2.224018 GGAATTTGTCAAGCAACTGCCA 60.224 45.455 0.00 0.00 43.38 4.92
79 80 2.407090 GGAATTTGTCAAGCAACTGCC 58.593 47.619 0.00 0.00 43.38 4.85
80 81 2.036346 AGGGAATTTGTCAAGCAACTGC 59.964 45.455 0.00 0.00 36.72 4.40
81 82 3.571401 AGAGGGAATTTGTCAAGCAACTG 59.429 43.478 0.00 0.00 36.72 3.16
82 83 3.837355 AGAGGGAATTTGTCAAGCAACT 58.163 40.909 0.00 0.00 36.72 3.16
83 84 5.904362 ATAGAGGGAATTTGTCAAGCAAC 57.096 39.130 0.00 0.00 36.72 4.17
84 85 6.916360 AAATAGAGGGAATTTGTCAAGCAA 57.084 33.333 0.00 0.00 34.87 3.91
85 86 6.916360 AAAATAGAGGGAATTTGTCAAGCA 57.084 33.333 0.00 0.00 0.00 3.91
86 87 7.759886 GGTAAAAATAGAGGGAATTTGTCAAGC 59.240 37.037 0.00 0.00 0.00 4.01
87 88 8.802267 TGGTAAAAATAGAGGGAATTTGTCAAG 58.198 33.333 0.00 0.00 0.00 3.02
88 89 8.581578 GTGGTAAAAATAGAGGGAATTTGTCAA 58.418 33.333 0.00 0.00 0.00 3.18
89 90 7.947890 AGTGGTAAAAATAGAGGGAATTTGTCA 59.052 33.333 0.00 0.00 0.00 3.58
90 91 8.349568 AGTGGTAAAAATAGAGGGAATTTGTC 57.650 34.615 0.00 0.00 0.00 3.18
91 92 8.721133 AAGTGGTAAAAATAGAGGGAATTTGT 57.279 30.769 0.00 0.00 0.00 2.83
96 97 9.511272 GTTTCTAAGTGGTAAAAATAGAGGGAA 57.489 33.333 0.00 0.00 0.00 3.97
97 98 8.887393 AGTTTCTAAGTGGTAAAAATAGAGGGA 58.113 33.333 0.00 0.00 0.00 4.20
128 129 9.473007 TGATTGGTCCAAGAAATGTATCATTTA 57.527 29.630 10.72 0.00 0.00 1.40
129 130 8.365060 TGATTGGTCCAAGAAATGTATCATTT 57.635 30.769 10.72 7.32 0.00 2.32
130 131 7.835682 TCTGATTGGTCCAAGAAATGTATCATT 59.164 33.333 10.72 0.00 0.00 2.57
131 132 7.348815 TCTGATTGGTCCAAGAAATGTATCAT 58.651 34.615 10.72 0.00 0.00 2.45
132 133 6.720309 TCTGATTGGTCCAAGAAATGTATCA 58.280 36.000 10.72 5.39 0.00 2.15
133 134 7.201767 CCTTCTGATTGGTCCAAGAAATGTATC 60.202 40.741 10.72 0.71 0.00 2.24
134 135 6.604795 CCTTCTGATTGGTCCAAGAAATGTAT 59.395 38.462 10.72 0.00 0.00 2.29
135 136 5.945784 CCTTCTGATTGGTCCAAGAAATGTA 59.054 40.000 10.72 0.00 0.00 2.29
136 137 4.768968 CCTTCTGATTGGTCCAAGAAATGT 59.231 41.667 10.72 0.00 0.00 2.71
137 138 4.381292 GCCTTCTGATTGGTCCAAGAAATG 60.381 45.833 10.72 4.07 0.00 2.32
138 139 3.766051 GCCTTCTGATTGGTCCAAGAAAT 59.234 43.478 10.72 0.00 0.00 2.17
139 140 3.157087 GCCTTCTGATTGGTCCAAGAAA 58.843 45.455 10.72 1.19 0.00 2.52
140 141 2.108075 TGCCTTCTGATTGGTCCAAGAA 59.892 45.455 10.72 7.33 0.00 2.52
141 142 1.704628 TGCCTTCTGATTGGTCCAAGA 59.295 47.619 10.72 0.00 0.00 3.02
142 143 2.089980 CTGCCTTCTGATTGGTCCAAG 58.910 52.381 10.72 0.00 0.00 3.61
143 144 1.704628 TCTGCCTTCTGATTGGTCCAA 59.295 47.619 6.80 6.80 0.00 3.53
144 145 1.361204 TCTGCCTTCTGATTGGTCCA 58.639 50.000 0.00 0.00 0.00 4.02
145 146 2.087646 GTTCTGCCTTCTGATTGGTCC 58.912 52.381 0.39 0.00 0.00 4.46
146 147 2.087646 GGTTCTGCCTTCTGATTGGTC 58.912 52.381 0.39 0.00 0.00 4.02
147 148 2.206576 GGTTCTGCCTTCTGATTGGT 57.793 50.000 0.39 0.00 0.00 3.67
158 159 0.609406 GTGGGAAGGAAGGTTCTGCC 60.609 60.000 0.00 0.00 37.58 4.85
159 160 0.955919 CGTGGGAAGGAAGGTTCTGC 60.956 60.000 0.00 0.00 0.00 4.26
160 161 0.321653 CCGTGGGAAGGAAGGTTCTG 60.322 60.000 0.00 0.00 0.00 3.02
161 162 0.473117 TCCGTGGGAAGGAAGGTTCT 60.473 55.000 0.00 0.00 34.33 3.01
162 163 0.618981 ATCCGTGGGAAGGAAGGTTC 59.381 55.000 0.00 0.00 41.69 3.62
163 164 0.618981 GATCCGTGGGAAGGAAGGTT 59.381 55.000 0.00 0.00 41.69 3.50
164 165 0.546747 TGATCCGTGGGAAGGAAGGT 60.547 55.000 0.00 0.00 41.69 3.50
165 166 0.107654 GTGATCCGTGGGAAGGAAGG 60.108 60.000 0.00 0.00 41.69 3.46
166 167 0.107654 GGTGATCCGTGGGAAGGAAG 60.108 60.000 0.00 0.00 41.69 3.46
167 168 1.559065 GGGTGATCCGTGGGAAGGAA 61.559 60.000 0.00 0.00 41.69 3.36
168 169 1.993391 GGGTGATCCGTGGGAAGGA 60.993 63.158 0.00 0.00 42.69 3.36
169 170 2.590092 GGGTGATCCGTGGGAAGG 59.410 66.667 0.00 0.00 34.34 3.46
170 171 2.590092 GGGGTGATCCGTGGGAAG 59.410 66.667 0.00 0.00 34.34 3.46
171 172 2.184194 TAGGGGGTGATCCGTGGGAA 62.184 60.000 0.00 0.00 34.34 3.97
172 173 2.184194 TTAGGGGGTGATCCGTGGGA 62.184 60.000 0.00 0.00 36.01 4.37
173 174 1.691337 TTAGGGGGTGATCCGTGGG 60.691 63.158 0.00 0.00 36.01 4.61
174 175 1.830145 CTTAGGGGGTGATCCGTGG 59.170 63.158 0.00 0.00 36.01 4.94
175 176 1.146263 GCTTAGGGGGTGATCCGTG 59.854 63.158 0.00 0.00 36.01 4.94
176 177 2.070650 GGCTTAGGGGGTGATCCGT 61.071 63.158 0.00 0.00 36.01 4.69
177 178 2.829592 GGCTTAGGGGGTGATCCG 59.170 66.667 0.00 0.00 36.01 4.18
178 179 1.128188 ATCGGCTTAGGGGGTGATCC 61.128 60.000 0.00 0.00 0.00 3.36
179 180 0.321996 GATCGGCTTAGGGGGTGATC 59.678 60.000 0.00 0.00 0.00 2.92
180 181 0.104934 AGATCGGCTTAGGGGGTGAT 60.105 55.000 0.00 0.00 0.00 3.06
181 182 1.048724 CAGATCGGCTTAGGGGGTGA 61.049 60.000 0.00 0.00 0.00 4.02
182 183 1.048724 TCAGATCGGCTTAGGGGGTG 61.049 60.000 0.00 0.00 0.00 4.61
183 184 0.760945 CTCAGATCGGCTTAGGGGGT 60.761 60.000 0.00 0.00 0.00 4.95
184 185 2.053618 CTCAGATCGGCTTAGGGGG 58.946 63.158 0.00 0.00 0.00 5.40
185 186 1.369321 GCTCAGATCGGCTTAGGGG 59.631 63.158 0.00 0.00 0.00 4.79
186 187 1.369321 GGCTCAGATCGGCTTAGGG 59.631 63.158 7.93 0.00 0.00 3.53
187 188 1.006805 CGGCTCAGATCGGCTTAGG 60.007 63.158 7.93 0.00 0.00 2.69
188 189 0.318275 GACGGCTCAGATCGGCTTAG 60.318 60.000 7.93 4.09 0.00 2.18
189 190 1.734137 GACGGCTCAGATCGGCTTA 59.266 57.895 7.93 0.00 0.00 3.09
190 191 2.496817 GACGGCTCAGATCGGCTT 59.503 61.111 7.93 0.00 0.00 4.35
191 192 3.532155 GGACGGCTCAGATCGGCT 61.532 66.667 0.00 0.00 34.37 5.52
192 193 3.838271 TGGACGGCTCAGATCGGC 61.838 66.667 0.00 0.00 0.00 5.54
193 194 2.105128 GTGGACGGCTCAGATCGG 59.895 66.667 0.00 0.00 0.00 4.18
194 195 1.517257 GTGTGGACGGCTCAGATCG 60.517 63.158 0.00 0.00 0.00 3.69
195 196 1.153549 GGTGTGGACGGCTCAGATC 60.154 63.158 0.00 0.00 0.00 2.75
196 197 1.267574 ATGGTGTGGACGGCTCAGAT 61.268 55.000 0.00 0.00 0.00 2.90
197 198 0.613572 TATGGTGTGGACGGCTCAGA 60.614 55.000 0.00 0.00 0.00 3.27
198 199 0.460284 GTATGGTGTGGACGGCTCAG 60.460 60.000 0.00 0.00 0.00 3.35
199 200 1.188871 TGTATGGTGTGGACGGCTCA 61.189 55.000 0.00 0.00 0.00 4.26
200 201 0.460284 CTGTATGGTGTGGACGGCTC 60.460 60.000 0.00 0.00 0.00 4.70
201 202 0.902984 TCTGTATGGTGTGGACGGCT 60.903 55.000 0.00 0.00 0.00 5.52
202 203 0.178068 ATCTGTATGGTGTGGACGGC 59.822 55.000 0.00 0.00 0.00 5.68
203 204 1.202533 GGATCTGTATGGTGTGGACGG 60.203 57.143 0.00 0.00 0.00 4.79
204 205 1.480545 TGGATCTGTATGGTGTGGACG 59.519 52.381 0.00 0.00 0.00 4.79
205 206 3.270877 GTTGGATCTGTATGGTGTGGAC 58.729 50.000 0.00 0.00 0.00 4.02
206 207 2.093711 CGTTGGATCTGTATGGTGTGGA 60.094 50.000 0.00 0.00 0.00 4.02
207 208 2.279741 CGTTGGATCTGTATGGTGTGG 58.720 52.381 0.00 0.00 0.00 4.17
208 209 2.930040 GACGTTGGATCTGTATGGTGTG 59.070 50.000 0.00 0.00 0.00 3.82
209 210 2.832129 AGACGTTGGATCTGTATGGTGT 59.168 45.455 0.00 0.00 0.00 4.16
210 211 3.448686 GAGACGTTGGATCTGTATGGTG 58.551 50.000 0.00 0.00 0.00 4.17
211 212 2.431057 GGAGACGTTGGATCTGTATGGT 59.569 50.000 0.00 0.00 0.00 3.55
212 213 2.695666 AGGAGACGTTGGATCTGTATGG 59.304 50.000 0.00 0.00 0.00 2.74
213 214 5.515797 TTAGGAGACGTTGGATCTGTATG 57.484 43.478 0.00 0.00 0.00 2.39
214 215 5.450137 CGTTTAGGAGACGTTGGATCTGTAT 60.450 44.000 0.00 0.00 35.88 2.29
215 216 4.142534 CGTTTAGGAGACGTTGGATCTGTA 60.143 45.833 0.00 0.00 35.88 2.74
216 217 3.367087 CGTTTAGGAGACGTTGGATCTGT 60.367 47.826 0.00 0.00 35.88 3.41
217 218 3.179830 CGTTTAGGAGACGTTGGATCTG 58.820 50.000 0.00 0.00 35.88 2.90
218 219 2.416972 GCGTTTAGGAGACGTTGGATCT 60.417 50.000 0.00 0.00 42.22 2.75
219 220 1.925185 GCGTTTAGGAGACGTTGGATC 59.075 52.381 0.00 0.00 42.22 3.36
220 221 1.274167 TGCGTTTAGGAGACGTTGGAT 59.726 47.619 0.00 0.00 42.22 3.41
221 222 0.675083 TGCGTTTAGGAGACGTTGGA 59.325 50.000 0.00 0.00 42.22 3.53
222 223 0.788391 GTGCGTTTAGGAGACGTTGG 59.212 55.000 0.00 0.00 42.22 3.77
223 224 0.433492 CGTGCGTTTAGGAGACGTTG 59.567 55.000 0.00 0.00 42.22 4.10
224 225 1.280206 GCGTGCGTTTAGGAGACGTT 61.280 55.000 0.00 0.00 42.22 3.99
225 226 1.731969 GCGTGCGTTTAGGAGACGT 60.732 57.895 0.00 0.00 42.22 4.34
226 227 1.443872 AGCGTGCGTTTAGGAGACG 60.444 57.895 0.00 0.00 43.04 4.18
227 228 1.352156 CCAGCGTGCGTTTAGGAGAC 61.352 60.000 0.00 0.00 0.00 3.36
228 229 1.080093 CCAGCGTGCGTTTAGGAGA 60.080 57.895 0.00 0.00 0.00 3.71
229 230 2.740714 GCCAGCGTGCGTTTAGGAG 61.741 63.158 0.00 0.00 0.00 3.69
230 231 2.740826 GCCAGCGTGCGTTTAGGA 60.741 61.111 0.00 0.00 0.00 2.94
231 232 3.799755 GGCCAGCGTGCGTTTAGG 61.800 66.667 0.00 0.00 0.00 2.69
232 233 2.612567 TTGGCCAGCGTGCGTTTAG 61.613 57.895 5.11 0.00 0.00 1.85
233 234 2.592001 TTGGCCAGCGTGCGTTTA 60.592 55.556 5.11 0.00 0.00 2.01
234 235 4.264638 GTTGGCCAGCGTGCGTTT 62.265 61.111 5.11 0.00 0.00 3.60
238 239 3.910490 TTTGGTTGGCCAGCGTGC 61.910 61.111 13.95 0.13 46.91 5.34
239 240 2.027460 GTTTGGTTGGCCAGCGTG 59.973 61.111 13.95 0.00 46.91 5.34
240 241 3.223589 GGTTTGGTTGGCCAGCGT 61.224 61.111 13.95 0.00 46.91 5.07
241 242 3.989787 GGGTTTGGTTGGCCAGCG 61.990 66.667 13.95 0.00 46.91 5.18
242 243 1.228737 TAGGGTTTGGTTGGCCAGC 60.229 57.895 11.82 11.82 46.91 4.85
243 244 1.250840 GCTAGGGTTTGGTTGGCCAG 61.251 60.000 5.11 0.00 46.91 4.85
244 245 1.228737 GCTAGGGTTTGGTTGGCCA 60.229 57.895 0.00 0.00 44.38 5.36
245 246 0.614697 ATGCTAGGGTTTGGTTGGCC 60.615 55.000 0.00 0.00 0.00 5.36
246 247 0.817654 GATGCTAGGGTTTGGTTGGC 59.182 55.000 0.00 0.00 0.00 4.52
247 248 2.493278 CAAGATGCTAGGGTTTGGTTGG 59.507 50.000 0.00 0.00 0.00 3.77
248 249 2.094545 GCAAGATGCTAGGGTTTGGTTG 60.095 50.000 0.00 0.00 40.96 3.77
249 250 2.171003 GCAAGATGCTAGGGTTTGGTT 58.829 47.619 0.00 0.00 40.96 3.67
250 251 1.075374 TGCAAGATGCTAGGGTTTGGT 59.925 47.619 3.78 0.00 45.31 3.67
251 252 1.747355 CTGCAAGATGCTAGGGTTTGG 59.253 52.381 3.78 0.00 45.31 3.28
252 253 1.133790 GCTGCAAGATGCTAGGGTTTG 59.866 52.381 3.78 0.00 45.31 2.93
253 254 1.272092 TGCTGCAAGATGCTAGGGTTT 60.272 47.619 0.00 0.00 45.31 3.27
254 255 0.329261 TGCTGCAAGATGCTAGGGTT 59.671 50.000 0.00 0.00 45.31 4.11
255 256 0.393537 GTGCTGCAAGATGCTAGGGT 60.394 55.000 2.77 0.00 45.31 4.34
256 257 0.393402 TGTGCTGCAAGATGCTAGGG 60.393 55.000 2.77 0.00 45.31 3.53
257 258 0.731417 GTGTGCTGCAAGATGCTAGG 59.269 55.000 2.77 0.00 45.31 3.02
258 259 1.664659 GAGTGTGCTGCAAGATGCTAG 59.335 52.381 2.77 1.40 45.31 3.42
259 260 1.676916 GGAGTGTGCTGCAAGATGCTA 60.677 52.381 2.77 0.00 45.31 3.49
260 261 0.959372 GGAGTGTGCTGCAAGATGCT 60.959 55.000 2.77 0.00 45.31 3.79
261 262 1.505353 GGAGTGTGCTGCAAGATGC 59.495 57.895 2.77 0.00 45.29 3.91
262 263 1.310933 GGGGAGTGTGCTGCAAGATG 61.311 60.000 2.77 0.00 34.07 2.90
263 264 1.001641 GGGGAGTGTGCTGCAAGAT 60.002 57.895 2.77 0.00 34.07 2.40
264 265 2.116983 GAGGGGAGTGTGCTGCAAGA 62.117 60.000 2.77 0.00 34.07 3.02
265 266 1.673665 GAGGGGAGTGTGCTGCAAG 60.674 63.158 2.77 0.00 34.49 4.01
266 267 2.431683 GAGGGGAGTGTGCTGCAA 59.568 61.111 2.77 0.00 34.49 4.08
267 268 3.640407 GGAGGGGAGTGTGCTGCA 61.640 66.667 0.00 0.00 34.49 4.41
268 269 4.416738 GGGAGGGGAGTGTGCTGC 62.417 72.222 0.00 0.00 0.00 5.25
269 270 2.608988 AGGGAGGGGAGTGTGCTG 60.609 66.667 0.00 0.00 0.00 4.41
270 271 2.284995 GAGGGAGGGGAGTGTGCT 60.285 66.667 0.00 0.00 0.00 4.40
271 272 2.284995 AGAGGGAGGGGAGTGTGC 60.285 66.667 0.00 0.00 0.00 4.57
272 273 1.687493 GGAGAGGGAGGGGAGTGTG 60.687 68.421 0.00 0.00 0.00 3.82
273 274 2.781406 GGAGAGGGAGGGGAGTGT 59.219 66.667 0.00 0.00 0.00 3.55
274 275 2.041405 GGGAGAGGGAGGGGAGTG 60.041 72.222 0.00 0.00 0.00 3.51
275 276 2.204705 AGGGAGAGGGAGGGGAGT 60.205 66.667 0.00 0.00 0.00 3.85
276 277 2.018086 AGAGGGAGAGGGAGGGGAG 61.018 68.421 0.00 0.00 0.00 4.30
277 278 2.015726 GAGAGGGAGAGGGAGGGGA 61.016 68.421 0.00 0.00 0.00 4.81
278 279 2.612251 GAGAGGGAGAGGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
279 280 2.612251 GGAGAGGGAGAGGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
280 281 2.612251 GGGAGAGGGAGAGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
281 282 2.612251 GGGGAGAGGGAGAGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
282 283 3.430497 CGGGGAGAGGGAGAGGGA 61.430 72.222 0.00 0.00 0.00 4.20
283 284 3.430497 TCGGGGAGAGGGAGAGGG 61.430 72.222 0.00 0.00 0.00 4.30
284 285 2.123640 GTCGGGGAGAGGGAGAGG 60.124 72.222 0.00 0.00 0.00 3.69
285 286 2.123640 GGTCGGGGAGAGGGAGAG 60.124 72.222 0.00 0.00 0.00 3.20
286 287 3.752167 GGGTCGGGGAGAGGGAGA 61.752 72.222 0.00 0.00 0.00 3.71
287 288 3.396822 ATGGGTCGGGGAGAGGGAG 62.397 68.421 0.00 0.00 0.00 4.30
288 289 3.364964 ATGGGTCGGGGAGAGGGA 61.365 66.667 0.00 0.00 0.00 4.20
289 290 3.164269 CATGGGTCGGGGAGAGGG 61.164 72.222 0.00 0.00 0.00 4.30
290 291 3.866582 GCATGGGTCGGGGAGAGG 61.867 72.222 0.00 0.00 0.00 3.69
291 292 4.227134 CGCATGGGTCGGGGAGAG 62.227 72.222 0.68 0.00 0.00 3.20
315 316 4.862823 GGGTCGGGGAGAGGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
316 317 4.075793 TGGGTCGGGGAGAGGGAG 62.076 72.222 0.00 0.00 0.00 4.30
317 318 4.075793 CTGGGTCGGGGAGAGGGA 62.076 72.222 0.00 0.00 0.00 4.20
318 319 3.396822 ATCTGGGTCGGGGAGAGGG 62.397 68.421 0.00 0.00 0.00 4.30
319 320 1.834822 GATCTGGGTCGGGGAGAGG 60.835 68.421 0.00 0.00 0.00 3.69
320 321 0.825840 GAGATCTGGGTCGGGGAGAG 60.826 65.000 0.00 0.00 0.00 3.20
321 322 1.230497 GAGATCTGGGTCGGGGAGA 59.770 63.158 0.00 0.00 0.00 3.71
322 323 1.834822 GGAGATCTGGGTCGGGGAG 60.835 68.421 0.00 0.00 0.00 4.30
323 324 2.282446 GGAGATCTGGGTCGGGGA 59.718 66.667 0.00 0.00 0.00 4.81
324 325 2.844839 GGGAGATCTGGGTCGGGG 60.845 72.222 0.00 0.00 0.00 5.73
325 326 1.834822 GAGGGAGATCTGGGTCGGG 60.835 68.421 0.00 0.00 0.00 5.14
326 327 1.834822 GGAGGGAGATCTGGGTCGG 60.835 68.421 0.00 0.00 0.00 4.79
327 328 1.834822 GGGAGGGAGATCTGGGTCG 60.835 68.421 0.00 0.00 0.00 4.79
328 329 1.460497 GGGGAGGGAGATCTGGGTC 60.460 68.421 0.00 0.00 0.00 4.46
329 330 2.706071 GGGGAGGGAGATCTGGGT 59.294 66.667 0.00 0.00 0.00 4.51
330 331 2.525381 CGGGGAGGGAGATCTGGG 60.525 72.222 0.00 0.00 0.00 4.45
331 332 1.834822 GTCGGGGAGGGAGATCTGG 60.835 68.421 0.00 0.00 0.00 3.86
332 333 1.834822 GGTCGGGGAGGGAGATCTG 60.835 68.421 0.00 0.00 0.00 2.90
333 334 2.609920 GGTCGGGGAGGGAGATCT 59.390 66.667 0.00 0.00 0.00 2.75
334 335 2.524640 GGGTCGGGGAGGGAGATC 60.525 72.222 0.00 0.00 0.00 2.75
335 336 3.364964 TGGGTCGGGGAGGGAGAT 61.365 66.667 0.00 0.00 0.00 2.75
336 337 4.075793 CTGGGTCGGGGAGGGAGA 62.076 72.222 0.00 0.00 0.00 3.71
337 338 4.075793 TCTGGGTCGGGGAGGGAG 62.076 72.222 0.00 0.00 0.00 4.30
338 339 4.393778 GTCTGGGTCGGGGAGGGA 62.394 72.222 0.00 0.00 0.00 4.20
340 341 4.400251 AGGTCTGGGTCGGGGAGG 62.400 72.222 0.00 0.00 0.00 4.30
341 342 2.760385 GAGGTCTGGGTCGGGGAG 60.760 72.222 0.00 0.00 0.00 4.30
342 343 4.393778 GGAGGTCTGGGTCGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
344 345 4.400251 AGGGAGGTCTGGGTCGGG 62.400 72.222 0.00 0.00 0.00 5.14
345 346 2.760385 GAGGGAGGTCTGGGTCGG 60.760 72.222 0.00 0.00 0.00 4.79
346 347 1.755008 GAGAGGGAGGTCTGGGTCG 60.755 68.421 0.00 0.00 0.00 4.79
347 348 1.382009 GGAGAGGGAGGTCTGGGTC 60.382 68.421 0.00 0.00 0.00 4.46
348 349 2.781406 GGAGAGGGAGGTCTGGGT 59.219 66.667 0.00 0.00 0.00 4.51
349 350 2.443016 CGGAGAGGGAGGTCTGGG 60.443 72.222 0.00 0.00 0.00 4.45
350 351 3.151022 GCGGAGAGGGAGGTCTGG 61.151 72.222 0.00 0.00 0.00 3.86
351 352 3.151022 GGCGGAGAGGGAGGTCTG 61.151 72.222 0.00 0.00 0.00 3.51
352 353 4.824515 CGGCGGAGAGGGAGGTCT 62.825 72.222 0.00 0.00 0.00 3.85
359 360 4.452733 GTTGGGACGGCGGAGAGG 62.453 72.222 13.24 0.00 0.00 3.69
360 361 3.358076 GAGTTGGGACGGCGGAGAG 62.358 68.421 13.24 0.00 0.00 3.20
361 362 3.379445 GAGTTGGGACGGCGGAGA 61.379 66.667 13.24 0.00 0.00 3.71
362 363 4.452733 GGAGTTGGGACGGCGGAG 62.453 72.222 13.24 0.00 0.00 4.63
363 364 3.588817 TAGGAGTTGGGACGGCGGA 62.589 63.158 13.24 0.00 0.00 5.54
364 365 3.072468 TAGGAGTTGGGACGGCGG 61.072 66.667 13.24 0.00 0.00 6.13
365 366 2.183555 GTAGGAGTTGGGACGGCG 59.816 66.667 4.80 4.80 0.00 6.46
366 367 2.582978 GGTAGGAGTTGGGACGGC 59.417 66.667 0.00 0.00 0.00 5.68
367 368 2.364780 GGGGTAGGAGTTGGGACGG 61.365 68.421 0.00 0.00 0.00 4.79
368 369 2.718073 CGGGGTAGGAGTTGGGACG 61.718 68.421 0.00 0.00 0.00 4.79
369 370 3.027675 GCGGGGTAGGAGTTGGGAC 62.028 68.421 0.00 0.00 0.00 4.46
370 371 2.686106 GCGGGGTAGGAGTTGGGA 60.686 66.667 0.00 0.00 0.00 4.37
371 372 3.793888 GGCGGGGTAGGAGTTGGG 61.794 72.222 0.00 0.00 0.00 4.12
372 373 4.157120 CGGCGGGGTAGGAGTTGG 62.157 72.222 0.00 0.00 0.00 3.77
373 374 4.832608 GCGGCGGGGTAGGAGTTG 62.833 72.222 9.78 0.00 0.00 3.16
407 408 3.123620 CAGGTCAAGAGCAGCGGC 61.124 66.667 0.00 0.00 41.61 6.53
408 409 3.123620 GCAGGTCAAGAGCAGCGG 61.124 66.667 1.02 0.00 32.07 5.52
409 410 1.962822 TTGCAGGTCAAGAGCAGCG 60.963 57.895 11.13 0.00 42.99 5.18
410 411 1.578423 GTTGCAGGTCAAGAGCAGC 59.422 57.895 9.32 9.32 39.72 5.25
411 412 0.601046 TCGTTGCAGGTCAAGAGCAG 60.601 55.000 1.84 0.00 39.72 4.24
412 413 0.880278 GTCGTTGCAGGTCAAGAGCA 60.880 55.000 1.84 0.00 34.91 4.26
413 414 1.569479 GGTCGTTGCAGGTCAAGAGC 61.569 60.000 0.00 0.00 34.91 4.09
414 415 0.249868 TGGTCGTTGCAGGTCAAGAG 60.250 55.000 0.00 0.00 34.91 2.85
415 416 0.179234 TTGGTCGTTGCAGGTCAAGA 59.821 50.000 0.00 0.00 34.91 3.02
416 417 0.307760 GTTGGTCGTTGCAGGTCAAG 59.692 55.000 0.00 0.00 34.91 3.02
417 418 1.433053 CGTTGGTCGTTGCAGGTCAA 61.433 55.000 0.00 0.00 34.52 3.18
418 419 1.885388 CGTTGGTCGTTGCAGGTCA 60.885 57.895 0.00 0.00 34.52 4.02
419 420 1.593209 TCGTTGGTCGTTGCAGGTC 60.593 57.895 0.00 0.00 40.80 3.85
420 421 1.885850 GTCGTTGGTCGTTGCAGGT 60.886 57.895 0.00 0.00 40.80 4.00
421 422 2.935955 GTCGTTGGTCGTTGCAGG 59.064 61.111 0.00 0.00 40.80 4.85
422 423 1.947146 TCGTCGTTGGTCGTTGCAG 60.947 57.895 0.00 0.00 40.80 4.41
423 424 2.104530 TCGTCGTTGGTCGTTGCA 59.895 55.556 0.00 0.00 40.80 4.08
424 425 2.542896 GTCGTCGTTGGTCGTTGC 59.457 61.111 0.00 0.00 40.80 4.17
927 928 4.388499 GTGCGCGAGGGGAAGGAA 62.388 66.667 12.10 0.00 0.00 3.36
953 955 1.095807 TCTGAGCCGACGACGATGAT 61.096 55.000 9.28 0.00 42.66 2.45
1008 1010 2.987547 TCCACCACGGAGTCGACC 60.988 66.667 13.01 3.55 41.61 4.79
1083 1085 1.675219 GTCCTTACCCTTGCGGTCA 59.325 57.895 0.00 0.00 43.58 4.02
1171 1173 1.597854 CCTTGGTGAACTCTGCGCA 60.598 57.895 10.98 10.98 0.00 6.09
1311 1313 1.195115 CAAGAGGGAGACGGGATCAA 58.805 55.000 0.00 0.00 0.00 2.57
1312 1314 0.041238 ACAAGAGGGAGACGGGATCA 59.959 55.000 0.00 0.00 0.00 2.92
1543 1547 3.065371 GCAACTAGCGGCAATGACTTAAT 59.935 43.478 1.45 0.00 0.00 1.40
1662 1667 0.470766 ACACCAACTTGGGCGAACTA 59.529 50.000 12.62 0.00 43.37 2.24
1760 1765 8.344831 TGCATTAAAGAATGAAGAATACATCGG 58.655 33.333 1.88 0.00 44.59 4.18
1836 1841 2.260844 AGCTTGCCATGCGTGTATAT 57.739 45.000 4.96 0.00 35.28 0.86
1872 1878 8.921205 TCCTACAATATTTTGACTCCTACCTAC 58.079 37.037 2.69 0.00 36.64 3.18
1953 1959 3.444916 GCGACACTGCTACATAAAGCTA 58.555 45.455 0.00 0.00 43.19 3.32
2093 2100 4.464951 ACATATTGTAGAAGACACCACCGA 59.535 41.667 0.00 0.00 37.96 4.69
2094 2101 4.566759 CACATATTGTAGAAGACACCACCG 59.433 45.833 0.00 0.00 37.96 4.94
2148 2160 5.304357 TGAAACATCTAGAACAGACTGGTCA 59.696 40.000 22.31 7.73 36.30 4.02
2165 2177 3.417069 TCGGAAGACCACATGAAACAT 57.583 42.857 0.00 0.00 35.59 2.71
2180 2192 0.615850 TGGCACCACACATATCGGAA 59.384 50.000 0.00 0.00 0.00 4.30
2233 2245 5.105756 GGCACTAAGCTGTATGAACCAAAAT 60.106 40.000 0.00 0.00 44.79 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.