AutoCloner

Multiple sequence alignment - TraesCS1B01G432700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G432700	chr1B	100.000	2801	0	0	1	2801	657271070	657273870	0.000000e+00	5173.0
1	TraesCS1B01G432700	chr1B	87.826	805	95	3	995	1799	622218321	622219122	0.000000e+00	941.0
2	TraesCS1B01G432700	chr1D	93.469	2404	84	28	422	2801	472560354	472562708	0.000000e+00	3502.0
3	TraesCS1B01G432700	chr1D	87.826	805	95	3	998	1802	452265060	452264259	0.000000e+00	941.0
4	TraesCS1B01G432700	chr1D	99.074	108	1	0	1	108	472555357	472555464	7.920000e-46	195.0
5	TraesCS1B01G432700	chr1D	94.521	73	4	0	132	204	472557603	472557675	2.280000e-21	113.0
6	TraesCS1B01G432700	chr1D	95.000	60	3	0	202	261	472557865	472557924	8.260000e-16	95.3
7	TraesCS1B01G432700	chr1A	90.959	1836	79	41	346	2162	566563553	566565320	0.000000e+00	2390.0
8	TraesCS1B01G432700	chr1A	88.075	805	93	3	998	1802	547216601	547215800	0.000000e+00	952.0
9	TraesCS1B01G432700	chr1A	88.075	805	93	3	998	1802	547238499	547237698	0.000000e+00	952.0
10	TraesCS1B01G432700	chr1A	91.059	425	31	7	2185	2607	566565484	566565903	4.050000e-158	568.0
11	TraesCS1B01G432700	chr1A	96.330	109	3	1	1	108	566561122	566561230	7.970000e-41	178.0
12	TraesCS1B01G432700	chr1A	90.909	88	7	1	2083	2170	566583033	566583119	1.760000e-22	117.0
13	TraesCS1B01G432700	chr5B	94.430	754	39	3	1050	1803	532876711	532877461	0.000000e+00	1157.0
14	TraesCS1B01G432700	chr5A	92.365	812	59	3	992	1803	553420882	553421690	0.000000e+00	1153.0
15	TraesCS1B01G432700	chr5A	93.421	76	5	0	2724	2799	41132434	41132359	2.280000e-21	113.0
16	TraesCS1B01G432700	chr5D	94.816	733	38	0	1071	1803	438360047	438360779	0.000000e+00	1144.0
17	TraesCS1B01G432700	chr4D	87.037	108	11	3	1	107	12974752	12974647	4.900000e-23	119.0
18	TraesCS1B01G432700	chr6D	89.362	94	8	2	1	93	460239902	460239994	1.760000e-22	117.0
19	TraesCS1B01G432700	chr6A	88.000	100	9	3	1	99	617585063	617584966	6.340000e-22	115.0
20	TraesCS1B01G432700	chr6A	91.250	80	3	1	2724	2799	62810765	62810686	3.820000e-19	106.0
21	TraesCS1B01G432700	chr3B	89.362	94	7	3	1	93	6331740	6331831	6.340000e-22	115.0
22	TraesCS1B01G432700	chr3B	85.321	109	10	6	1	107	282716	282820	1.060000e-19	108.0
23	TraesCS1B01G432700	chr2A	88.000	100	9	3	1	99	50039944	50039847	6.340000e-22	115.0
24	TraesCS1B01G432700	chr2B	93.506	77	4	1	2724	2799	762916545	762916469	2.280000e-21	113.0
25	TraesCS1B01G432700	chr2B	92.308	78	5	1	2723	2799	762916468	762916545	2.950000e-20	110.0
26	TraesCS1B01G432700	chr2B	90.244	82	5	2	2723	2801	794694469	794694550	1.370000e-18	104.0
27	TraesCS1B01G432700	chr2B	90.244	82	5	2	2723	2801	794803370	794803451	1.370000e-18	104.0
28	TraesCS1B01G432700	chr7B	86.275	102	11	3	1	101	112007856	112007955	1.060000e-19	108.0
29	TraesCS1B01G432700	chr7D	90.123	81	5	2	2724	2801	234073752	234073672	4.940000e-18	102.0
30	TraesCS1B01G432700	chr6B	91.026	78	4	1	2724	2801	262114450	262114376	4.940000e-18	102.0
31	TraesCS1B01G432700	chr4A	89.474	76	8	0	2724	2799	28995199	28995124	2.300000e-16	97.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G432700	chr1B	657271070	657273870	2800	False	5173.000000	5173	100.000000	1	2801	1	chr1B.!!$F2	2800
1	TraesCS1B01G432700	chr1B	622218321	622219122	801	False	941.000000	941	87.826000	995	1799	1	chr1B.!!$F1	804
2	TraesCS1B01G432700	chr1D	472555357	472562708	7351	False	976.325000	3502	95.516000	1	2801	4	chr1D.!!$F1	2800
3	TraesCS1B01G432700	chr1D	452264259	452265060	801	True	941.000000	941	87.826000	998	1802	1	chr1D.!!$R1	804
4	TraesCS1B01G432700	chr1A	566561122	566565903	4781	False	1045.333333	2390	92.782667	1	2607	3	chr1A.!!$F2	2606
5	TraesCS1B01G432700	chr1A	547215800	547216601	801	True	952.000000	952	88.075000	998	1802	1	chr1A.!!$R1	804
6	TraesCS1B01G432700	chr1A	547237698	547238499	801	True	952.000000	952	88.075000	998	1802	1	chr1A.!!$R2	804
7	TraesCS1B01G432700	chr5B	532876711	532877461	750	False	1157.000000	1157	94.430000	1050	1803	1	chr5B.!!$F1	753
8	TraesCS1B01G432700	chr5A	553420882	553421690	808	False	1153.000000	1153	92.365000	992	1803	1	chr5A.!!$F1	811
9	TraesCS1B01G432700	chr5D	438360047	438360779	732	False	1144.000000	1144	94.816000	1071	1803	1	chr5D.!!$F1	732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
643	6514	0.034616	AAGTGGAGTGAGCACTGAGC	59.965	55.0	8.03	0.0	42.66	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2297	8342	0.114168	TGCTTGTTAGGGTGGGCAAT	59.886	50.0	0.0	0.0	0.0	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
108	110	2.930682	GAGGTTAAGCGACACTTCATCC	59.069	50.000	0.00	0.00	39.97	3.51
109	111	2.007608	GGTTAAGCGACACTTCATCCC	58.992	52.381	0.00	0.00	39.97	3.85
111	113	3.118884	GGTTAAGCGACACTTCATCCCTA	60.119	47.826	0.00	0.00	39.97	3.53
112	114	2.969628	AAGCGACACTTCATCCCTAG	57.030	50.000	0.00	0.00	30.77	3.02
113	115	2.145397	AGCGACACTTCATCCCTAGA	57.855	50.000	0.00	0.00	0.00	2.43
115	117	2.625790	AGCGACACTTCATCCCTAGATC	59.374	50.000	0.00	0.00	0.00	2.75
116	118	2.605823	GCGACACTTCATCCCTAGATCG	60.606	54.545	0.00	0.00	0.00	3.69
117	119	2.605823	CGACACTTCATCCCTAGATCGC	60.606	54.545	0.00	0.00	0.00	4.58
118	120	1.689273	ACACTTCATCCCTAGATCGCC	59.311	52.381	0.00	0.00	0.00	5.54
119	121	1.688735	CACTTCATCCCTAGATCGCCA	59.311	52.381	0.00	0.00	0.00	5.69
120	122	2.301296	CACTTCATCCCTAGATCGCCAT	59.699	50.000	0.00	0.00	0.00	4.40
121	123	2.975489	ACTTCATCCCTAGATCGCCATT	59.025	45.455	0.00	0.00	0.00	3.16
122	124	3.244353	ACTTCATCCCTAGATCGCCATTG	60.244	47.826	0.00	0.00	0.00	2.82
128	130	3.069586	TCCCTAGATCGCCATTGTTACTG	59.930	47.826	0.00	0.00	0.00	2.74
129	131	3.069586	CCCTAGATCGCCATTGTTACTGA	59.930	47.826	0.00	0.00	0.00	3.41
130	132	4.262635	CCCTAGATCGCCATTGTTACTGAT	60.263	45.833	0.00	0.00	0.00	2.90
210	2519	4.748701	AGGATCCGCTATACCCTAGAAAA	58.251	43.478	5.98	0.00	0.00	2.29
294	2681	2.180276	ACTAAGAATCCAGACGGTGCT	58.820	47.619	0.00	0.00	0.00	4.40
296	2683	1.813513	AAGAATCCAGACGGTGCTTG	58.186	50.000	0.00	0.00	0.00	4.01
310	2697	2.108952	GGTGCTTGGAGGGGATATCAAT	59.891	50.000	4.83	0.00	0.00	2.57
320	2707	5.259632	GAGGGGATATCAATTTGGAGATGG	58.740	45.833	4.83	0.00	0.00	3.51
400	6264	4.142004	ACGAGTAGACAAATGGATACCACC	60.142	45.833	0.00	0.00	35.80	4.61
480	6344	3.259902	GGGATAAGAACAACCGTCACTC	58.740	50.000	0.00	0.00	0.00	3.51
530	6394	1.944709	ACACCTACGTTTTTCACAGCC	59.055	47.619	0.00	0.00	0.00	4.85
566	6437	3.411351	CGCTTCCCACGTGAACGG	61.411	66.667	19.30	10.29	44.95	4.44
636	6507	0.536006	AACTGCCAAGTGGAGTGAGC	60.536	55.000	0.18	0.00	36.51	4.26
638	6509	1.227943	TGCCAAGTGGAGTGAGCAC	60.228	57.895	0.18	0.00	37.39	4.40
639	6510	1.072159	GCCAAGTGGAGTGAGCACT	59.928	57.895	2.20	2.20	45.84	4.40
640	6511	1.233285	GCCAAGTGGAGTGAGCACTG	61.233	60.000	8.03	0.00	42.66	3.66
641	6512	0.394192	CCAAGTGGAGTGAGCACTGA	59.606	55.000	8.03	0.00	42.66	3.41
642	6513	1.607509	CCAAGTGGAGTGAGCACTGAG	60.608	57.143	8.03	0.00	42.66	3.35
643	6514	0.034616	AAGTGGAGTGAGCACTGAGC	59.965	55.000	8.03	0.00	42.66	4.26
658	6529	1.339291	CTGAGCAGACAGACAGACACA	59.661	52.381	0.00	0.00	39.94	3.72
711	6582	1.794222	GGCCACGAGAAAATCCACG	59.206	57.895	0.00	0.00	0.00	4.94
729	6601	3.758931	GCACCCAATCGCCAACCC	61.759	66.667	0.00	0.00	0.00	4.11
781	6657	2.040278	CCTCCACCCTGAGGCTCT	59.960	66.667	16.72	0.00	45.13	4.09
853	6729	1.981853	GATTTTTCTGGCCCCCGCA	60.982	57.895	0.00	0.00	36.38	5.69
949	6825	4.351054	CCACCACAGCCCCACTCC	62.351	72.222	0.00	0.00	0.00	3.85
965	6841	0.743688	CTCCTAGAGAGCACGCACAT	59.256	55.000	0.00	0.00	35.31	3.21
1185	7061	2.203308	CTCTACCTCGGCCCGCTA	60.203	66.667	0.00	0.00	0.00	4.26
1815	7691	3.403038	CAAGTAAGCTGCTAGGTGTTGT	58.597	45.455	0.90	0.00	0.00	3.32
1816	7692	3.045601	AGTAAGCTGCTAGGTGTTGTG	57.954	47.619	0.90	0.00	0.00	3.33
1817	7693	2.368875	AGTAAGCTGCTAGGTGTTGTGT	59.631	45.455	0.90	0.00	0.00	3.72
1818	7694	2.348411	AAGCTGCTAGGTGTTGTGTT	57.652	45.000	0.90	0.00	0.00	3.32
1819	7695	3.485463	AAGCTGCTAGGTGTTGTGTTA	57.515	42.857	0.90	0.00	0.00	2.41
1948	7842	3.369546	ACGAAGGTTGAATGCAAAAGG	57.630	42.857	0.00	0.00	35.42	3.11
1961	7855	3.020274	TGCAAAAGGCTGTTGTTAGACA	58.980	40.909	18.33	5.06	45.15	3.41
1973	7867	6.538021	GCTGTTGTTAGACATGATGATCTCTT	59.462	38.462	0.00	0.00	0.00	2.85
2019	7913	5.011943	TCACCTGTGTTAATTAACCGGTAGT	59.988	40.000	22.47	12.25	35.37	2.73
2060	7954	5.559035	CGGCTTTCAGTTTCTTAGTTCAGTG	60.559	44.000	0.00	0.00	0.00	3.66
2079	7983	4.965814	AGTGGATGCTTATCATACAGTGG	58.034	43.478	0.00	0.00	46.27	4.00
2080	7984	3.499918	GTGGATGCTTATCATACAGTGGC	59.500	47.826	0.00	0.00	46.27	5.01
2297	8342	1.949525	GCAGCAGAACTTTCAGGAACA	59.050	47.619	0.00	0.00	0.00	3.18
2369	8415	5.798132	TCAGAAATGACAGAGTAAGCATGT	58.202	37.500	0.00	0.00	0.00	3.21
2370	8416	6.935167	TCAGAAATGACAGAGTAAGCATGTA	58.065	36.000	0.00	0.00	0.00	2.29
2371	8417	6.813649	TCAGAAATGACAGAGTAAGCATGTAC	59.186	38.462	0.00	0.00	0.00	2.90
2426	8473	5.509498	AGAAACTAGAAATGCATGGCCTAA	58.491	37.500	3.32	0.00	0.00	2.69
2492	8540	1.684983	GCTGCAAAGGTATGATGCCAT	59.315	47.619	1.58	0.00	39.31	4.40
2494	8542	1.409790	TGCAAAGGTATGATGCCATGC	59.590	47.619	18.51	18.51	39.31	4.06
2513	8561	4.981263	TGCCAGGCAACACATTCAGTGA	62.981	50.000	13.33	0.00	42.89	3.41
2578	8630	1.797635	CAAAATTTCAAACGGCGCCAT	59.202	42.857	28.98	8.91	0.00	4.40
2614	8666	9.859152	CCAGGGAAGAAGAATATAAAGAGAAAT	57.141	33.333	0.00	0.00	0.00	2.17
2629	8681	7.721286	AAAGAGAAATATATTCAGACCAGCG	57.279	36.000	0.00	0.00	0.00	5.18
2646	8698	4.222114	CCAGCGAGTCAAGAACAAAATTC	58.778	43.478	0.00	0.00	0.00	2.17
2678	8730	3.425577	TCAGCCGGTACAGTAATTACG	57.574	47.619	9.91	7.74	0.00	3.18
2686	8738	6.441274	CCGGTACAGTAATTACGTATGATGT	58.559	40.000	17.29	13.84	0.00	3.06
2716	8768	5.389520	TGTTTGAACACCCAATAATCCTCA	58.610	37.500	0.00	0.00	33.17	3.86
2727	8779	6.183361	ACCCAATAATCCTCAGACACATACTC	60.183	42.308	0.00	0.00	0.00	2.59
2739	8791	2.165030	ACACATACTCCCTCCGTAAACG	59.835	50.000	0.00	0.00	39.44	3.60
2740	8792	2.424601	CACATACTCCCTCCGTAAACGA	59.575	50.000	3.65	0.00	43.02	3.85
2750	8802	5.829924	TCCCTCCGTAAACGAATATAAGAGT	59.170	40.000	3.65	0.00	43.02	3.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
96	98	2.605823	GCGATCTAGGGATGAAGTGTCG	60.606	54.545	0.00	0.00	31.46	4.35
108	110	4.322080	TCAGTAACAATGGCGATCTAGG	57.678	45.455	0.00	0.00	0.00	3.02
109	111	6.479990	TGAAATCAGTAACAATGGCGATCTAG	59.520	38.462	0.00	0.00	0.00	2.43
111	113	5.185454	TGAAATCAGTAACAATGGCGATCT	58.815	37.500	0.00	0.00	0.00	2.75
112	114	5.294306	TCTGAAATCAGTAACAATGGCGATC	59.706	40.000	10.06	0.00	44.12	3.69
113	115	5.185454	TCTGAAATCAGTAACAATGGCGAT	58.815	37.500	10.06	0.00	44.12	4.58
115	117	4.944962	TCTGAAATCAGTAACAATGGCG	57.055	40.909	10.06	0.00	44.12	5.69
116	118	9.294030	CTTTTATCTGAAATCAGTAACAATGGC	57.706	33.333	10.06	0.00	44.12	4.40
224	2533	9.959749	GTTCTCTACTAAATCTGTCTATTCCAG	57.040	37.037	0.00	0.00	0.00	3.86
283	2670	2.046892	CCTCCAAGCACCGTCTGG	60.047	66.667	0.00	0.00	42.84	3.86
294	2681	4.731416	TCTCCAAATTGATATCCCCTCCAA	59.269	41.667	0.00	0.00	0.00	3.53
296	2683	5.259632	CATCTCCAAATTGATATCCCCTCC	58.740	45.833	0.00	0.00	0.00	4.30
320	2707	7.283127	TGCCTAGATATTGTTCCTGATGTTTTC	59.717	37.037	0.00	0.00	0.00	2.29
388	6252	0.179045	GCTGCTCGGTGGTATCCATT	60.179	55.000	0.00	0.00	35.28	3.16
400	6264	2.029560	TGCCTAGATATTGAGCTGCTCG	60.030	50.000	23.35	7.94	32.35	5.03
480	6344	3.629398	GGGATGGCAGATGTAGTTTTCAG	59.371	47.826	0.00	0.00	0.00	3.02
636	6507	1.339291	TGTCTGTCTGTCTGCTCAGTG	59.661	52.381	0.00	0.00	36.85	3.66
638	6509	1.339291	TGTGTCTGTCTGTCTGCTCAG	59.661	52.381	0.00	0.00	36.85	3.35
639	6510	1.067669	GTGTGTCTGTCTGTCTGCTCA	59.932	52.381	0.00	0.00	0.00	4.26
640	6511	1.604185	GGTGTGTCTGTCTGTCTGCTC	60.604	57.143	0.00	0.00	0.00	4.26
641	6512	0.390860	GGTGTGTCTGTCTGTCTGCT	59.609	55.000	0.00	0.00	0.00	4.24
642	6513	0.601311	GGGTGTGTCTGTCTGTCTGC	60.601	60.000	0.00	0.00	0.00	4.26
643	6514	0.319040	CGGGTGTGTCTGTCTGTCTG	60.319	60.000	0.00	0.00	0.00	3.51
644	6515	0.755698	ACGGGTGTGTCTGTCTGTCT	60.756	55.000	0.00	0.00	0.00	3.41
645	6516	0.597637	CACGGGTGTGTCTGTCTGTC	60.598	60.000	0.00	0.00	41.34	3.51
646	6517	1.040893	TCACGGGTGTGTCTGTCTGT	61.041	55.000	0.00	0.00	46.49	3.41
647	6518	0.318441	ATCACGGGTGTGTCTGTCTG	59.682	55.000	0.00	0.00	46.49	3.51
648	6519	0.603569	GATCACGGGTGTGTCTGTCT	59.396	55.000	0.00	0.00	46.49	3.41
649	6520	0.603569	AGATCACGGGTGTGTCTGTC	59.396	55.000	0.00	0.00	46.49	3.51
650	6521	0.318441	CAGATCACGGGTGTGTCTGT	59.682	55.000	19.29	0.00	46.49	3.41
651	6522	0.603065	TCAGATCACGGGTGTGTCTG	59.397	55.000	20.49	20.49	45.44	3.51
652	6523	1.273606	CTTCAGATCACGGGTGTGTCT	59.726	52.381	0.00	1.87	46.49	3.41
658	6529	2.418746	CGGATTTCTTCAGATCACGGGT	60.419	50.000	0.00	0.00	0.00	5.28
853	6729	1.689582	GGGGAAGGGGATGAGACGT	60.690	63.158	0.00	0.00	0.00	4.34
949	6825	0.593518	CCGATGTGCGTGCTCTCTAG	60.594	60.000	0.00	0.00	38.67	2.43
965	6841	2.050714	GACTTCGTGCGTGTCCGA	60.051	61.111	8.38	0.00	35.63	4.55
1815	7691	2.610976	CGGTCGGTTTCCAGACATAACA	60.611	50.000	10.77	0.00	39.01	2.41
1816	7692	1.997606	CGGTCGGTTTCCAGACATAAC	59.002	52.381	10.77	0.00	39.01	1.89
1817	7693	1.619827	ACGGTCGGTTTCCAGACATAA	59.380	47.619	10.77	0.00	39.01	1.90
1818	7694	1.067425	CACGGTCGGTTTCCAGACATA	60.067	52.381	10.77	0.00	39.01	2.29
1819	7695	0.320421	CACGGTCGGTTTCCAGACAT	60.320	55.000	10.77	0.32	39.01	3.06
1877	7771	2.807631	GAAACCCAGCTGCATGCACG	62.808	60.000	18.46	14.14	45.94	5.34
1878	7772	1.080298	GAAACCCAGCTGCATGCAC	60.080	57.895	18.46	13.93	45.94	4.57
1879	7773	2.628696	CGAAACCCAGCTGCATGCA	61.629	57.895	21.29	21.29	45.94	3.96
1880	7774	2.146073	AACGAAACCCAGCTGCATGC	62.146	55.000	11.82	11.82	43.29	4.06
1948	7842	6.047870	AGAGATCATCATGTCTAACAACAGC	58.952	40.000	0.00	0.00	30.76	4.40
1973	7867	1.839354	TGCATGCTCAGGTTGATCCTA	59.161	47.619	20.33	0.00	46.24	2.94
1984	7878	1.170442	CACAGGTGATTGCATGCTCA	58.830	50.000	20.33	12.52	0.00	4.26
2019	7913	1.599071	GCCGATCGATTGCAAGATCAA	59.401	47.619	18.66	0.00	42.36	2.57
2060	7954	3.077359	GGCCACTGTATGATAAGCATCC	58.923	50.000	0.00	0.00	38.44	3.51
2077	7981	1.558167	TAAAGATCCACTGCCGGCCA	61.558	55.000	26.77	11.42	0.00	5.36
2078	7982	1.095807	GTAAAGATCCACTGCCGGCC	61.096	60.000	26.77	6.18	0.00	6.13
2079	7983	0.392461	TGTAAAGATCCACTGCCGGC	60.392	55.000	22.73	22.73	0.00	6.13
2080	7984	1.656652	CTGTAAAGATCCACTGCCGG	58.343	55.000	0.00	0.00	0.00	6.13
2297	8342	0.114168	TGCTTGTTAGGGTGGGCAAT	59.886	50.000	0.00	0.00	0.00	3.56
2492	8540	0.467844	ACTGAATGTGTTGCCTGGCA	60.468	50.000	19.30	19.30	36.47	4.92
2494	8542	1.608055	TCACTGAATGTGTTGCCTGG	58.392	50.000	0.00	0.00	46.27	4.45
2498	8546	2.287788	CCACCTTCACTGAATGTGTTGC	60.288	50.000	19.74	0.00	46.27	4.17
2513	8561	2.682858	GCTATCTTTTACGCCCCACCTT	60.683	50.000	0.00	0.00	0.00	3.50
2519	8567	3.813166	TGCTAATGCTATCTTTTACGCCC	59.187	43.478	0.00	0.00	40.48	6.13
2578	8630	4.104086	TCTTCTTCCCTGGAGCAAGATTA	58.896	43.478	0.00	0.00	0.00	1.75
2614	8666	4.887655	TCTTGACTCGCTGGTCTGAATATA	59.112	41.667	7.30	0.00	37.16	0.86
2629	8681	5.460091	GCCAAGTGAATTTTGTTCTTGACTC	59.540	40.000	0.00	0.00	38.06	3.36
2678	8730	7.167468	GGTGTTCAAACAACAGAAACATCATAC	59.833	37.037	6.05	0.00	45.79	2.39
2716	8768	3.377253	TTACGGAGGGAGTATGTGTCT	57.623	47.619	0.00	0.00	0.00	3.41
2727	8779	5.919141	CACTCTTATATTCGTTTACGGAGGG	59.081	44.000	2.09	0.00	40.29	4.30
2750	8802	6.095580	AGAGCGTTCAGATCACTATCTAAACA	59.904	38.462	1.01	0.00	39.48	2.83
2759	8811	7.721402	AGAAATATAAGAGCGTTCAGATCACT	58.279	34.615	1.01	0.00	37.82	3.41
2760	8812	7.938563	AGAAATATAAGAGCGTTCAGATCAC	57.061	36.000	1.01	0.00	37.82	3.06
2761	8813	8.948631	AAAGAAATATAAGAGCGTTCAGATCA	57.051	30.769	1.01	0.00	37.82	2.92
2763	8815	8.969267	CGTAAAGAAATATAAGAGCGTTCAGAT	58.031	33.333	1.01	0.00	0.00	2.90
2764	8816	7.434307	CCGTAAAGAAATATAAGAGCGTTCAGA	59.566	37.037	1.01	0.00	0.00	3.27
2765	8817	7.434307	TCCGTAAAGAAATATAAGAGCGTTCAG	59.566	37.037	1.01	0.00	0.00	3.02
2766	8818	7.259882	TCCGTAAAGAAATATAAGAGCGTTCA	58.740	34.615	1.01	0.00	0.00	3.18
2767	8819	7.096147	CCTCCGTAAAGAAATATAAGAGCGTTC	60.096	40.741	0.00	0.00	0.00	3.95
2768	8820	6.700520	CCTCCGTAAAGAAATATAAGAGCGTT	59.299	38.462	0.00	0.00	0.00	4.84
2769	8821	6.214399	CCTCCGTAAAGAAATATAAGAGCGT	58.786	40.000	0.00	0.00	0.00	5.07
2770	8822	5.634020	CCCTCCGTAAAGAAATATAAGAGCG	59.366	44.000	0.00	0.00	0.00	5.03
2771	8823	6.756221	TCCCTCCGTAAAGAAATATAAGAGC	58.244	40.000	0.00	0.00	0.00	4.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.