Multiple sequence alignment - TraesCS1B01G431200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G431200 chr1B 100.000 5961 0 0 742 6702 655759767 655765727 0.000000e+00 11008.0
1 TraesCS1B01G431200 chr1B 100.000 309 0 0 1 309 655759026 655759334 7.540000e-159 571.0
2 TraesCS1B01G431200 chr1B 84.308 325 26 10 2252 2551 132928461 132928137 1.830000e-75 294.0
3 TraesCS1B01G431200 chr1B 90.580 138 9 4 5517 5651 56276067 56275931 5.340000e-41 180.0
4 TraesCS1B01G431200 chr1D 92.247 1651 110 9 3878 5518 471593926 471595568 0.000000e+00 2324.0
5 TraesCS1B01G431200 chr1D 90.891 988 56 9 2714 3701 471592504 471593457 0.000000e+00 1295.0
6 TraesCS1B01G431200 chr1D 89.637 936 47 21 744 1654 471591009 471591919 0.000000e+00 1146.0
7 TraesCS1B01G431200 chr1D 88.065 796 55 18 5940 6702 471595775 471596563 0.000000e+00 907.0
8 TraesCS1B01G431200 chr1D 90.409 563 23 8 2013 2551 471591950 471592505 0.000000e+00 712.0
9 TraesCS1B01G431200 chr1D 98.193 166 2 1 2550 2715 206955701 206955537 8.500000e-74 289.0
10 TraesCS1B01G431200 chr1D 82.253 293 24 9 19 309 471590666 471590932 1.880000e-55 228.0
11 TraesCS1B01G431200 chr1D 97.619 42 1 0 5825 5866 471595714 471595755 9.320000e-09 73.1
12 TraesCS1B01G431200 chr1A 91.530 1216 59 14 1379 2551 565991117 565992331 0.000000e+00 1635.0
13 TraesCS1B01G431200 chr1A 88.986 1144 87 17 3810 4948 565993495 565994604 0.000000e+00 1378.0
14 TraesCS1B01G431200 chr1A 93.901 869 49 2 2714 3579 565992330 565993197 0.000000e+00 1308.0
15 TraesCS1B01G431200 chr1A 89.432 634 50 12 6079 6702 565996210 565996836 0.000000e+00 784.0
16 TraesCS1B01G431200 chr1A 92.105 532 38 2 4988 5518 565995178 565995706 0.000000e+00 747.0
17 TraesCS1B01G431200 chr1A 89.845 581 33 14 742 1319 565990568 565991125 0.000000e+00 723.0
18 TraesCS1B01G431200 chr1A 89.855 138 10 4 5517 5651 274640045 274639909 2.480000e-39 174.0
19 TraesCS1B01G431200 chr1A 92.391 92 5 2 5676 5766 565995727 565995817 5.450000e-26 130.0
20 TraesCS1B01G431200 chr1A 100.000 45 0 0 5897 5941 11648189 11648233 4.310000e-12 84.2
21 TraesCS1B01G431200 chr1A 100.000 44 0 0 5897 5940 349355946 349355989 1.550000e-11 82.4
22 TraesCS1B01G431200 chr5D 96.045 177 6 1 2539 2715 368995534 368995359 3.060000e-73 287.0
23 TraesCS1B01G431200 chr5D 96.512 172 4 2 2549 2720 321902079 321901910 3.960000e-72 283.0
24 TraesCS1B01G431200 chr2D 96.552 174 4 2 2543 2715 516708304 516708476 3.060000e-73 287.0
25 TraesCS1B01G431200 chr2D 93.388 121 7 1 5517 5636 11748491 11748611 1.920000e-40 178.0
26 TraesCS1B01G431200 chr2D 85.417 96 11 3 5639 5733 2608257 2608350 5.530000e-16 97.1
27 TraesCS1B01G431200 chr2D 100.000 45 0 0 5897 5941 307650242 307650286 4.310000e-12 84.2
28 TraesCS1B01G431200 chr2D 100.000 44 0 0 5897 5940 71353493 71353450 1.550000e-11 82.4
29 TraesCS1B01G431200 chr2D 97.561 41 0 1 5640 5679 512559045 512559085 1.210000e-07 69.4
30 TraesCS1B01G431200 chr5A 97.041 169 4 1 2547 2715 651496989 651496822 3.960000e-72 283.0
31 TraesCS1B01G431200 chr5A 83.861 316 30 5 2249 2543 437405592 437405907 1.420000e-71 281.0
32 TraesCS1B01G431200 chr5A 89.674 184 15 3 2714 2896 437405915 437406095 1.450000e-56 231.0
33 TraesCS1B01G431200 chr5A 95.041 121 5 1 5517 5636 112418306 112418186 8.870000e-44 189.0
34 TraesCS1B01G431200 chr4D 95.402 174 7 1 2542 2715 450155643 450155815 6.620000e-70 276.0
35 TraesCS1B01G431200 chr2B 93.989 183 9 2 2533 2715 475291 475471 6.620000e-70 276.0
36 TraesCS1B01G431200 chr2B 83.030 330 29 7 2249 2551 682179630 682179959 2.380000e-69 274.0
37 TraesCS1B01G431200 chr2B 93.548 124 7 1 5517 5639 231667535 231667412 4.130000e-42 183.0
38 TraesCS1B01G431200 chr2B 92.308 130 7 2 5517 5645 74209741 74209868 1.480000e-41 182.0
39 TraesCS1B01G431200 chr2B 100.000 46 0 0 5897 5942 105849794 105849749 1.200000e-12 86.1
40 TraesCS1B01G431200 chr4B 93.956 182 9 2 2550 2730 71600624 71600804 2.380000e-69 274.0
41 TraesCS1B01G431200 chr4B 95.238 42 1 1 5639 5679 255026695 255026654 1.560000e-06 65.8
42 TraesCS1B01G431200 chr5B 93.514 185 9 3 2531 2715 295174703 295174884 8.560000e-69 272.0
43 TraesCS1B01G431200 chr5B 91.071 56 4 1 5676 5730 618274194 618274249 2.590000e-09 75.0
44 TraesCS1B01G431200 chr3B 95.041 121 5 1 5517 5636 383155173 383155293 8.870000e-44 189.0
45 TraesCS1B01G431200 chrUn 94.215 121 6 1 5517 5636 313296292 313296412 4.130000e-42 183.0
46 TraesCS1B01G431200 chrUn 97.826 46 1 0 5897 5942 233430997 233431042 5.570000e-11 80.5
47 TraesCS1B01G431200 chr7A 91.667 132 10 1 5517 5647 610154562 610154431 1.480000e-41 182.0
48 TraesCS1B01G431200 chr7D 93.069 101 7 0 2796 2896 618281724 618281624 1.510000e-31 148.0
49 TraesCS1B01G431200 chr3D 97.826 46 1 0 5897 5942 525540318 525540273 5.570000e-11 80.5
50 TraesCS1B01G431200 chr3D 97.826 46 1 0 5897 5942 540607281 540607326 5.570000e-11 80.5
51 TraesCS1B01G431200 chr3D 90.476 42 4 0 6307 6348 15875884 15875925 1.000000e-03 56.5
52 TraesCS1B01G431200 chr6A 97.778 45 1 0 5897 5941 456015109 456015153 2.000000e-10 78.7
53 TraesCS1B01G431200 chr4A 85.714 63 3 4 5649 5710 3071526 3071469 2.020000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G431200 chr1B 655759026 655765727 6701 False 5789.500000 11008 100.000000 1 6702 2 chr1B.!!$F1 6701
1 TraesCS1B01G431200 chr1D 471590666 471596563 5897 False 955.014286 2324 90.160143 19 6702 7 chr1D.!!$F1 6683
2 TraesCS1B01G431200 chr1A 565990568 565996836 6268 False 957.857143 1635 91.170000 742 6702 7 chr1A.!!$F3 5960
3 TraesCS1B01G431200 chr5A 437405592 437406095 503 False 256.000000 281 86.767500 2249 2896 2 chr5A.!!$F1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 278 0.111639 AGCCTCGGGTCTATCCTCTC 59.888 60.0 0.00 0.0 36.25 3.20 F
1036 1042 0.609151 TCGTTCCCGGCTTTGTATGA 59.391 50.0 0.00 0.0 33.95 2.15 F
1565 1591 0.887247 CGCCATGATGTTTTCACCCA 59.113 50.0 0.00 0.0 37.11 4.51 F
2473 2543 0.894141 AGTAGCAGCACTCCTGACTG 59.106 55.0 0.00 0.0 44.64 3.51 F
3630 3704 0.811616 GCTGCCATAAGGACAGACCG 60.812 60.0 11.14 0.0 44.74 4.79 F
4680 5068 0.449388 GGGCGATTTTCAGCTCACTG 59.551 55.0 0.00 0.0 45.95 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2255 0.178068 ACGGGATGGAGTTGAATCCG 59.822 55.0 0.00 0.00 42.90 4.18 R
2455 2519 0.605589 ACAGTCAGGAGTGCTGCTAC 59.394 55.0 6.80 0.86 35.19 3.58 R
2544 2614 0.822811 GGAACGGAGGGAGTAGAACC 59.177 60.0 0.00 0.00 0.00 3.62 R
4066 4444 0.250234 AGAGCGCCTGCATAAACTCA 59.750 50.0 2.29 0.00 46.23 3.41 R
5615 6541 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.00 44.66 1.40 R
5913 6839 0.104120 ACACAGTACAGACGCAAGCA 59.896 50.0 0.00 0.00 45.62 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 142 4.331968 ACCTTTAAAGATGTGATCGGCAA 58.668 39.130 16.98 0.00 0.00 4.52
169 172 1.514087 CCCAGCCACATGCATGTTC 59.486 57.895 29.48 22.28 44.83 3.18
217 220 3.530910 AACCGAGCCAGAACCACCG 62.531 63.158 0.00 0.00 0.00 4.94
219 222 2.030562 CGAGCCAGAACCACCGTT 59.969 61.111 0.00 0.00 33.88 4.44
227 230 3.407443 GAACCACCGTTCCCTCAAA 57.593 52.632 0.00 0.00 42.26 2.69
228 231 1.682740 GAACCACCGTTCCCTCAAAA 58.317 50.000 0.00 0.00 42.26 2.44
229 232 2.025898 GAACCACCGTTCCCTCAAAAA 58.974 47.619 0.00 0.00 42.26 1.94
251 254 1.704641 AAAAGCCAGAACCACCTTCC 58.295 50.000 0.00 0.00 0.00 3.46
252 255 0.178961 AAAGCCAGAACCACCTTCCC 60.179 55.000 0.00 0.00 0.00 3.97
253 256 2.035783 GCCAGAACCACCTTCCCC 59.964 66.667 0.00 0.00 0.00 4.81
254 257 2.763902 CCAGAACCACCTTCCCCC 59.236 66.667 0.00 0.00 0.00 5.40
255 258 1.852626 CCAGAACCACCTTCCCCCT 60.853 63.158 0.00 0.00 0.00 4.79
275 278 0.111639 AGCCTCGGGTCTATCCTCTC 59.888 60.000 0.00 0.00 36.25 3.20
852 858 1.309499 ACGAGCACGAGGAGGAAGAG 61.309 60.000 11.40 0.00 42.66 2.85
855 861 0.968393 AGCACGAGGAGGAAGAGGAC 60.968 60.000 0.00 0.00 0.00 3.85
873 879 1.397692 GACGAAGAGGAGTACGGTGAG 59.602 57.143 0.00 0.00 0.00 3.51
1004 1010 4.462280 CTTCGCCACGGTACCCCC 62.462 72.222 6.25 0.00 0.00 5.40
1006 1012 3.598747 TTCGCCACGGTACCCCCTA 62.599 63.158 6.25 0.00 0.00 3.53
1009 1015 0.901580 CGCCACGGTACCCCCTATAT 60.902 60.000 6.25 0.00 0.00 0.86
1010 1016 0.900421 GCCACGGTACCCCCTATATC 59.100 60.000 6.25 0.00 0.00 1.63
1011 1017 1.551791 GCCACGGTACCCCCTATATCT 60.552 57.143 6.25 0.00 0.00 1.98
1012 1018 2.454538 CCACGGTACCCCCTATATCTC 58.545 57.143 6.25 0.00 0.00 2.75
1013 1019 2.042706 CCACGGTACCCCCTATATCTCT 59.957 54.545 6.25 0.00 0.00 3.10
1014 1020 3.354467 CACGGTACCCCCTATATCTCTC 58.646 54.545 6.25 0.00 0.00 3.20
1015 1021 2.026449 ACGGTACCCCCTATATCTCTCG 60.026 54.545 6.25 0.00 0.00 4.04
1016 1022 2.377073 GGTACCCCCTATATCTCTCGC 58.623 57.143 0.00 0.00 0.00 5.03
1017 1023 2.025131 GGTACCCCCTATATCTCTCGCT 60.025 54.545 0.00 0.00 0.00 4.93
1018 1024 2.517998 ACCCCCTATATCTCTCGCTC 57.482 55.000 0.00 0.00 0.00 5.03
1019 1025 1.340211 ACCCCCTATATCTCTCGCTCG 60.340 57.143 0.00 0.00 0.00 5.03
1020 1026 1.340211 CCCCCTATATCTCTCGCTCGT 60.340 57.143 0.00 0.00 0.00 4.18
1021 1027 2.438411 CCCCTATATCTCTCGCTCGTT 58.562 52.381 0.00 0.00 0.00 3.85
1022 1028 2.420722 CCCCTATATCTCTCGCTCGTTC 59.579 54.545 0.00 0.00 0.00 3.95
1023 1029 2.420722 CCCTATATCTCTCGCTCGTTCC 59.579 54.545 0.00 0.00 0.00 3.62
1024 1030 2.420722 CCTATATCTCTCGCTCGTTCCC 59.579 54.545 0.00 0.00 0.00 3.97
1025 1031 0.875728 ATATCTCTCGCTCGTTCCCG 59.124 55.000 0.00 0.00 0.00 5.14
1026 1032 1.164662 TATCTCTCGCTCGTTCCCGG 61.165 60.000 0.00 0.00 33.95 5.73
1027 1033 4.856607 CTCTCGCTCGTTCCCGGC 62.857 72.222 0.00 0.00 33.95 6.13
1029 1035 4.436998 CTCGCTCGTTCCCGGCTT 62.437 66.667 0.00 0.00 33.95 4.35
1030 1036 3.934391 CTCGCTCGTTCCCGGCTTT 62.934 63.158 0.00 0.00 33.95 3.51
1031 1037 3.788766 CGCTCGTTCCCGGCTTTG 61.789 66.667 0.00 0.00 33.95 2.77
1032 1038 2.668550 GCTCGTTCCCGGCTTTGT 60.669 61.111 0.00 0.00 33.95 2.83
1033 1039 1.375013 GCTCGTTCCCGGCTTTGTA 60.375 57.895 0.00 0.00 33.95 2.41
1036 1042 0.609151 TCGTTCCCGGCTTTGTATGA 59.391 50.000 0.00 0.00 33.95 2.15
1038 1044 1.330521 CGTTCCCGGCTTTGTATGATG 59.669 52.381 0.00 0.00 0.00 3.07
1047 1053 4.084171 CGGCTTTGTATGATGTGATGCTAG 60.084 45.833 0.00 0.00 0.00 3.42
1070 1076 1.135402 GGCGGTCGAATTGAGCATTTT 60.135 47.619 0.31 0.00 45.52 1.82
1180 1186 3.068881 CTCGTCAGGGGGAAAGCA 58.931 61.111 0.00 0.00 0.00 3.91
1186 1192 1.903404 CAGGGGGAAAGCACACACC 60.903 63.158 0.00 0.00 0.00 4.16
1250 1256 1.149148 GGACGAGGTCTGCTTGTTTC 58.851 55.000 0.00 0.00 32.47 2.78
1312 1318 3.827302 GGGTCTGAAGAACTAGTCACAGA 59.173 47.826 13.38 13.38 38.61 3.41
1319 1325 4.688511 AGAACTAGTCACAGAGTTAGCG 57.311 45.455 0.00 0.00 36.04 4.26
1327 1337 4.097012 GTCACAGAGTTAGCGTAGTTAGC 58.903 47.826 0.00 0.00 0.00 3.09
1341 1352 6.072673 AGCGTAGTTAGCAGCAAAGTTAATTT 60.073 34.615 0.00 0.00 37.01 1.82
1352 1363 6.251376 CAGCAAAGTTAATTTATGGAACGAGC 59.749 38.462 0.00 0.00 0.00 5.03
1410 1436 3.441222 TCTGATGCGATTTTGCTTGTGAT 59.559 39.130 0.00 0.00 35.36 3.06
1518 1544 1.329906 CTCGATCTTGTTGGCATGAGC 59.670 52.381 0.00 0.00 41.10 4.26
1565 1591 0.887247 CGCCATGATGTTTTCACCCA 59.113 50.000 0.00 0.00 37.11 4.51
1605 1631 6.415280 TGTTTCGTTTGTTCATTTCCATTACG 59.585 34.615 0.00 0.00 0.00 3.18
1638 1664 6.248433 ACCACATCATGAGTAAGGTGAAAAT 58.752 36.000 0.09 0.00 0.00 1.82
1683 1726 7.472334 AAGAATTGAATTGCTGTTGGATAGT 57.528 32.000 0.00 0.00 0.00 2.12
1696 1739 6.374333 GCTGTTGGATAGTTGGATGAAAAGTA 59.626 38.462 0.00 0.00 0.00 2.24
1760 1803 2.836981 TGGCCCTTGGGTAATCAAATTG 59.163 45.455 0.00 0.00 0.00 2.32
1767 1810 5.104817 CCTTGGGTAATCAAATTGAAGGCAT 60.105 40.000 0.00 0.00 0.00 4.40
1768 1811 6.098124 CCTTGGGTAATCAAATTGAAGGCATA 59.902 38.462 0.00 0.00 0.00 3.14
1770 1813 5.954752 TGGGTAATCAAATTGAAGGCATACA 59.045 36.000 0.00 0.00 0.00 2.29
1958 2001 1.514678 TTGCGTCGCCAAATTGCTCT 61.515 50.000 15.88 0.00 0.00 4.09
1978 2021 8.008513 TGCTCTTTCTACCCACTATAAGTAAG 57.991 38.462 0.00 0.00 0.00 2.34
1990 2033 5.755375 CACTATAAGTAAGCACCACCATCAG 59.245 44.000 0.00 0.00 0.00 2.90
1993 2036 3.788227 AGTAAGCACCACCATCAGAAA 57.212 42.857 0.00 0.00 0.00 2.52
2009 2052 4.910195 TCAGAAAGTACACTGGCATTGAT 58.090 39.130 12.15 0.00 35.20 2.57
2195 2242 2.676176 GCTGAGAATGCTGTGCAGACTA 60.676 50.000 3.02 0.00 43.65 2.59
2208 2255 6.500684 TGTGCAGACTAATTCAGAAAATCC 57.499 37.500 0.00 0.00 0.00 3.01
2329 2376 4.401925 CAAAGGGTCTTCTTGAGGTCAAT 58.598 43.478 0.00 0.00 35.02 2.57
2391 2438 2.485122 GTCCGCGCCATCCTTTTG 59.515 61.111 0.00 0.00 0.00 2.44
2399 2446 1.067706 CGCCATCCTTTTGTTGCATGA 60.068 47.619 0.00 0.00 0.00 3.07
2407 2454 4.082081 TCCTTTTGTTGCATGACATGATCC 60.082 41.667 19.76 5.76 0.00 3.36
2473 2543 0.894141 AGTAGCAGCACTCCTGACTG 59.106 55.000 0.00 0.00 44.64 3.51
2511 2581 8.043113 AGATGCATCTCATGTAACAGTTCTTTA 58.957 33.333 23.75 0.00 35.05 1.85
2514 2584 8.289618 TGCATCTCATGTAACAGTTCTTTAAAC 58.710 33.333 0.00 0.00 0.00 2.01
2515 2585 8.289618 GCATCTCATGTAACAGTTCTTTAAACA 58.710 33.333 0.00 0.00 0.00 2.83
2526 2596 7.370383 ACAGTTCTTTAAACAAGCATATGTGG 58.630 34.615 4.29 0.00 32.81 4.17
2537 2607 5.981088 AAGCATATGTGGTTGAAATGTCA 57.019 34.783 6.06 0.00 43.90 3.58
2543 2613 5.981088 ATGTGGTTGAAATGTCATGCTTA 57.019 34.783 0.00 0.00 32.48 3.09
2544 2614 5.375417 TGTGGTTGAAATGTCATGCTTAG 57.625 39.130 0.00 0.00 32.48 2.18
2546 2616 4.218417 GTGGTTGAAATGTCATGCTTAGGT 59.782 41.667 0.00 0.00 32.48 3.08
2548 2618 5.048083 TGGTTGAAATGTCATGCTTAGGTTC 60.048 40.000 0.00 0.00 32.48 3.62
2549 2619 5.183904 GGTTGAAATGTCATGCTTAGGTTCT 59.816 40.000 0.00 0.00 32.48 3.01
2550 2620 6.374333 GGTTGAAATGTCATGCTTAGGTTCTA 59.626 38.462 0.00 0.00 32.48 2.10
2551 2621 6.985188 TGAAATGTCATGCTTAGGTTCTAC 57.015 37.500 0.00 0.00 0.00 2.59
2552 2622 6.711277 TGAAATGTCATGCTTAGGTTCTACT 58.289 36.000 0.00 0.00 0.00 2.57
2553 2623 6.818644 TGAAATGTCATGCTTAGGTTCTACTC 59.181 38.462 0.00 0.00 0.00 2.59
2554 2624 4.737855 TGTCATGCTTAGGTTCTACTCC 57.262 45.455 0.00 0.00 0.00 3.85
2555 2625 3.451178 TGTCATGCTTAGGTTCTACTCCC 59.549 47.826 0.00 0.00 0.00 4.30
2556 2626 3.707102 GTCATGCTTAGGTTCTACTCCCT 59.293 47.826 0.00 0.00 34.74 4.20
2557 2627 3.961408 TCATGCTTAGGTTCTACTCCCTC 59.039 47.826 0.00 0.00 32.08 4.30
2558 2628 2.748388 TGCTTAGGTTCTACTCCCTCC 58.252 52.381 0.00 0.00 32.08 4.30
2559 2629 1.682323 GCTTAGGTTCTACTCCCTCCG 59.318 57.143 0.00 0.00 32.08 4.63
2560 2630 2.949508 GCTTAGGTTCTACTCCCTCCGT 60.950 54.545 0.00 0.00 32.08 4.69
2561 2631 3.363627 CTTAGGTTCTACTCCCTCCGTT 58.636 50.000 0.00 0.00 32.08 4.44
2562 2632 1.849977 AGGTTCTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 0.00 3.95
2563 2633 0.822811 GGTTCTACTCCCTCCGTTCC 59.177 60.000 0.00 0.00 0.00 3.62
2564 2634 1.619160 GGTTCTACTCCCTCCGTTCCT 60.619 57.143 0.00 0.00 0.00 3.36
2565 2635 2.357569 GGTTCTACTCCCTCCGTTCCTA 60.358 54.545 0.00 0.00 0.00 2.94
2566 2636 3.359950 GTTCTACTCCCTCCGTTCCTAA 58.640 50.000 0.00 0.00 0.00 2.69
2567 2637 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2568 2638 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2569 2639 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2570 2640 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2571 2641 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
2572 2642 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2573 2643 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2574 2644 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2575 2645 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2576 2646 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2577 2647 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2578 2648 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2579 2649 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2580 2650 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2581 2651 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2582 2652 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2583 2653 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2598 2668 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
2599 2669 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
2600 2670 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
2603 2673 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
2607 2677 9.725019 AGAGATTTCAACAAATGACTACATACA 57.275 29.630 0.00 0.00 37.92 2.29
2611 2681 8.795786 TTTCAACAAATGACTACATACAAAGC 57.204 30.769 0.00 0.00 37.92 3.51
2612 2682 7.503521 TCAACAAATGACTACATACAAAGCA 57.496 32.000 0.00 0.00 35.50 3.91
2613 2683 7.935520 TCAACAAATGACTACATACAAAGCAA 58.064 30.769 0.00 0.00 35.50 3.91
2614 2684 8.409371 TCAACAAATGACTACATACAAAGCAAA 58.591 29.630 0.00 0.00 35.50 3.68
2615 2685 9.029243 CAACAAATGACTACATACAAAGCAAAA 57.971 29.630 0.00 0.00 35.50 2.44
2616 2686 9.762933 AACAAATGACTACATACAAAGCAAAAT 57.237 25.926 0.00 0.00 35.50 1.82
2617 2687 9.195411 ACAAATGACTACATACAAAGCAAAATG 57.805 29.630 0.00 0.00 35.50 2.32
2618 2688 9.409312 CAAATGACTACATACAAAGCAAAATGA 57.591 29.630 0.00 0.00 35.50 2.57
2619 2689 9.630098 AAATGACTACATACAAAGCAAAATGAG 57.370 29.630 0.00 0.00 35.50 2.90
2620 2690 7.744087 TGACTACATACAAAGCAAAATGAGT 57.256 32.000 0.00 0.00 0.00 3.41
2621 2691 7.584108 TGACTACATACAAAGCAAAATGAGTG 58.416 34.615 0.00 0.00 0.00 3.51
2622 2692 7.443879 TGACTACATACAAAGCAAAATGAGTGA 59.556 33.333 0.00 0.00 0.00 3.41
2623 2693 8.165239 ACTACATACAAAGCAAAATGAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
2624 2694 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
2625 2695 9.282247 CTACATACAAAGCAAAATGAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
2626 2696 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
2627 2697 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
2628 2698 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
2629 2699 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
2630 2700 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
2664 2734 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2666 2736 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2667 2737 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2668 2738 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2669 2739 8.546322 TCTATATACATCCGTATGTGGTAGTCT 58.454 37.037 3.56 0.00 45.99 3.24
2670 2740 9.828039 CTATATACATCCGTATGTGGTAGTCTA 57.172 37.037 3.56 0.00 45.99 2.59
2672 2742 9.696572 ATATACATCCGTATGTGGTAGTCTATT 57.303 33.333 3.56 0.00 45.99 1.73
2673 2743 6.726490 ACATCCGTATGTGGTAGTCTATTT 57.274 37.500 0.00 0.00 44.79 1.40
2674 2744 6.513180 ACATCCGTATGTGGTAGTCTATTTG 58.487 40.000 0.00 0.00 44.79 2.32
2675 2745 6.322969 ACATCCGTATGTGGTAGTCTATTTGA 59.677 38.462 0.00 0.00 44.79 2.69
2676 2746 6.778834 TCCGTATGTGGTAGTCTATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
2677 2747 7.172868 TCCGTATGTGGTAGTCTATTTGAAA 57.827 36.000 0.00 0.00 0.00 2.69
2678 2748 7.788026 TCCGTATGTGGTAGTCTATTTGAAAT 58.212 34.615 0.00 0.00 0.00 2.17
2679 2749 7.924412 TCCGTATGTGGTAGTCTATTTGAAATC 59.076 37.037 0.00 0.00 0.00 2.17
2680 2750 7.926555 CCGTATGTGGTAGTCTATTTGAAATCT 59.073 37.037 0.00 0.00 0.00 2.40
2681 2751 8.969267 CGTATGTGGTAGTCTATTTGAAATCTC 58.031 37.037 0.00 0.00 0.00 2.75
2709 2779 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2710 2780 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
2711 2781 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
2712 2782 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
2716 2786 9.169592 CAAATATTTAGGAACGGAGGAAGTAAA 57.830 33.333 0.00 0.00 0.00 2.01
2902 2973 3.181329 TCTGGAAGGTTTGCTATCAGGA 58.819 45.455 0.00 0.00 0.00 3.86
2942 3013 1.788308 CACTTGCTGAACAAATTGCGG 59.212 47.619 0.00 0.00 37.96 5.69
3065 3136 8.822652 AGTATTTTCAAAAGAAGCTGATTTGG 57.177 30.769 15.19 5.84 35.34 3.28
3136 3207 6.692849 TCCAGAATGCTCCTCATATGTAAT 57.307 37.500 1.90 0.00 34.33 1.89
3186 3257 7.312154 GTCAAACAATATGCATTTGTGGTCTA 58.688 34.615 20.50 8.50 37.38 2.59
3205 3276 9.886132 GTGGTCTATCCTGAGTTTTTAATCTAA 57.114 33.333 0.00 0.00 37.07 2.10
3267 3338 4.935702 TGTCAAAGAATGTTCTTGCCAAG 58.064 39.130 8.64 0.00 46.22 3.61
3275 3349 5.537674 AGAATGTTCTTGCCAAGTCTTCATT 59.462 36.000 4.04 10.46 32.55 2.57
3387 3461 3.365220 GTCGTGAGATCCTTCAAAAGTCG 59.635 47.826 0.00 0.00 45.19 4.18
3406 3480 3.611113 GTCGAAAGCAGCAATCGTACTTA 59.389 43.478 16.54 0.00 37.79 2.24
3420 3494 7.352739 CAATCGTACTTATTACAAATGGCTCC 58.647 38.462 0.00 0.00 0.00 4.70
3493 3567 9.613428 TTAGTGAGTTAATGAAGGTATCCATTG 57.387 33.333 0.00 0.00 35.02 2.82
3531 3605 6.154203 TGCATTGTTTTCTGTATTGGAACA 57.846 33.333 0.00 0.00 0.00 3.18
3556 3630 5.743636 ATTTAGTGGCACCAATCAAATGT 57.256 34.783 15.27 0.00 0.00 2.71
3615 3689 5.954296 AATTATGAGTATGACCATGCTGC 57.046 39.130 5.35 0.00 33.86 5.25
3630 3704 0.811616 GCTGCCATAAGGACAGACCG 60.812 60.000 11.14 0.00 44.74 4.79
3634 3708 1.139058 GCCATAAGGACAGACCGACAT 59.861 52.381 0.00 0.00 44.74 3.06
3649 3723 6.797033 CAGACCGACATAGTTTTTGATTGTTC 59.203 38.462 0.00 0.00 0.00 3.18
3653 3727 6.527722 CCGACATAGTTTTTGATTGTTCCATG 59.472 38.462 0.00 0.00 0.00 3.66
3658 3732 6.907206 AGTTTTTGATTGTTCCATGTGTTG 57.093 33.333 0.00 0.00 0.00 3.33
3664 3738 2.064434 TGTTCCATGTGTTGCCTGAA 57.936 45.000 0.00 0.00 0.00 3.02
3708 3782 6.663944 ATCGTAGGAAAGTTTGATAACTGC 57.336 37.500 0.00 0.00 43.74 4.40
3715 3789 8.465273 AGGAAAGTTTGATAACTGCTAAGTTT 57.535 30.769 0.00 0.00 44.47 2.66
3727 3801 4.998033 ACTGCTAAGTTTGCTCTTCCTTAC 59.002 41.667 10.60 0.00 30.14 2.34
3736 3810 1.732809 GCTCTTCCTTACGTTCAAGGC 59.267 52.381 11.61 0.00 44.14 4.35
3738 3812 3.368116 GCTCTTCCTTACGTTCAAGGCTA 60.368 47.826 11.61 2.82 44.14 3.93
3739 3813 4.425520 CTCTTCCTTACGTTCAAGGCTAG 58.574 47.826 11.61 10.96 44.14 3.42
3740 3814 4.084287 TCTTCCTTACGTTCAAGGCTAGA 58.916 43.478 11.61 12.69 44.14 2.43
3741 3815 4.525487 TCTTCCTTACGTTCAAGGCTAGAA 59.475 41.667 11.61 1.56 44.14 2.10
3742 3816 5.187186 TCTTCCTTACGTTCAAGGCTAGAAT 59.813 40.000 11.61 0.00 44.14 2.40
3743 3817 5.416271 TCCTTACGTTCAAGGCTAGAATT 57.584 39.130 11.61 0.00 44.14 2.17
3744 3818 6.534475 TCCTTACGTTCAAGGCTAGAATTA 57.466 37.500 11.61 0.00 44.14 1.40
3745 3819 6.938507 TCCTTACGTTCAAGGCTAGAATTAA 58.061 36.000 11.61 0.00 44.14 1.40
3746 3820 7.039882 TCCTTACGTTCAAGGCTAGAATTAAG 58.960 38.462 11.61 0.00 44.14 1.85
3747 3821 7.039882 CCTTACGTTCAAGGCTAGAATTAAGA 58.960 38.462 4.20 0.00 38.80 2.10
3748 3822 7.711339 CCTTACGTTCAAGGCTAGAATTAAGAT 59.289 37.037 4.20 0.00 38.80 2.40
3749 3823 9.745880 CTTACGTTCAAGGCTAGAATTAAGATA 57.254 33.333 0.00 0.00 31.60 1.98
3750 3824 9.525409 TTACGTTCAAGGCTAGAATTAAGATAC 57.475 33.333 0.00 0.00 0.00 2.24
3751 3825 7.553334 ACGTTCAAGGCTAGAATTAAGATACA 58.447 34.615 0.00 0.00 0.00 2.29
3752 3826 7.707035 ACGTTCAAGGCTAGAATTAAGATACAG 59.293 37.037 0.00 0.00 0.00 2.74
3753 3827 7.921214 CGTTCAAGGCTAGAATTAAGATACAGA 59.079 37.037 0.00 0.00 0.00 3.41
3754 3828 9.255304 GTTCAAGGCTAGAATTAAGATACAGAG 57.745 37.037 0.00 0.00 0.00 3.35
3874 4238 6.923012 TGCATGTGTATTGAGCTGTAAAATT 58.077 32.000 0.00 0.00 0.00 1.82
3875 4239 7.377398 TGCATGTGTATTGAGCTGTAAAATTT 58.623 30.769 0.00 0.00 0.00 1.82
3876 4240 7.328982 TGCATGTGTATTGAGCTGTAAAATTTG 59.671 33.333 0.00 0.00 0.00 2.32
3914 4292 7.642669 ACTAATGCATGGACAAATCTTATTCG 58.357 34.615 0.00 0.00 0.00 3.34
3933 4311 4.116747 TCGTTTTTGTTTGATGCAGGTT 57.883 36.364 0.00 0.00 0.00 3.50
3961 4339 8.293027 AGAAAATCATATATCTCCCCCTTTCA 57.707 34.615 0.00 0.00 0.00 2.69
4017 4395 5.715753 AGTTCGGAACTACTTGGTAGAGAAT 59.284 40.000 21.24 0.00 40.69 2.40
4037 4415 8.912988 AGAGAATGACTATTTTGGTTTTGACAA 58.087 29.630 0.00 0.00 0.00 3.18
4058 4436 5.643777 ACAATCAGAAGGTACAGTACATTGC 59.356 40.000 15.20 7.26 32.21 3.56
4066 4444 5.464984 AGGTACAGTACATTGCCCTACTAT 58.535 41.667 12.89 0.00 0.00 2.12
4076 4454 5.765182 ACATTGCCCTACTATGAGTTTATGC 59.235 40.000 0.00 0.00 35.37 3.14
4080 4458 4.319177 CCCTACTATGAGTTTATGCAGGC 58.681 47.826 0.00 0.00 0.00 4.85
4129 4509 4.513318 TGTGCAATGTGACTATTCGTTTCA 59.487 37.500 0.00 0.00 0.00 2.69
4188 4568 1.270550 CACATTCTTGGTGGAACTGCC 59.729 52.381 0.00 0.00 36.74 4.85
4264 4644 6.936900 AGAGAAGCAGTTACTTTAAGATTGCA 59.063 34.615 0.00 0.00 0.00 4.08
4337 4717 5.744171 ACCAGCATATGTACATCAGTTCAA 58.256 37.500 12.68 0.00 0.00 2.69
4354 4734 4.943705 AGTTCAATTGTACATGTAGCCTGG 59.056 41.667 16.34 0.00 0.00 4.45
4410 4797 0.611896 AATCGAGTGGCAAAAGGGGG 60.612 55.000 0.00 0.00 0.00 5.40
4498 4886 8.696410 TTGTTTGTAACTTTGGATCTCAAAAC 57.304 30.769 9.64 6.82 43.88 2.43
4499 4887 7.831753 TGTTTGTAACTTTGGATCTCAAAACA 58.168 30.769 9.64 8.65 43.88 2.83
4505 4893 4.405358 ACTTTGGATCTCAAAACAGCCAAA 59.595 37.500 0.00 0.00 43.88 3.28
4508 4896 4.724399 TGGATCTCAAAACAGCCAAACTA 58.276 39.130 0.00 0.00 0.00 2.24
4513 4901 4.816385 TCTCAAAACAGCCAAACTACTCTG 59.184 41.667 0.00 0.00 0.00 3.35
4600 4988 3.085533 GTCAGTCTGTCCTCTGAGCTAA 58.914 50.000 0.00 0.00 40.63 3.09
4601 4989 3.699038 GTCAGTCTGTCCTCTGAGCTAAT 59.301 47.826 0.00 0.00 40.63 1.73
4653 5041 2.293170 GAGATACTTCAAAGGCCAGCC 58.707 52.381 5.01 0.00 0.00 4.85
4680 5068 0.449388 GGGCGATTTTCAGCTCACTG 59.551 55.000 0.00 0.00 45.95 3.66
4715 5103 5.844301 ATTTTGGAATCGTTCAATGCAAC 57.156 34.783 0.00 0.00 0.00 4.17
4731 5119 1.867233 GCAACGGGCATAGAGTATGTG 59.133 52.381 0.00 0.00 43.97 3.21
4747 5135 5.933617 AGTATGTGCAGGTATGATCATGTT 58.066 37.500 18.72 0.66 0.00 2.71
4748 5136 5.761726 AGTATGTGCAGGTATGATCATGTTG 59.238 40.000 18.72 13.56 0.00 3.33
4749 5137 3.954200 TGTGCAGGTATGATCATGTTGT 58.046 40.909 18.72 0.00 0.00 3.32
4750 5138 3.690628 TGTGCAGGTATGATCATGTTGTG 59.309 43.478 18.72 10.83 0.00 3.33
4751 5139 2.684374 TGCAGGTATGATCATGTTGTGC 59.316 45.455 18.72 19.14 0.00 4.57
4754 5142 3.065786 CAGGTATGATCATGTTGTGCCAC 59.934 47.826 18.72 5.50 0.00 5.01
4828 5216 5.107760 TGTTGCGTTGACTTATTCGTTCTAC 60.108 40.000 0.00 0.00 0.00 2.59
4863 5251 3.438183 TCTCTAAAACTTCCGGCTACCT 58.562 45.455 0.00 0.00 0.00 3.08
4883 5271 0.669932 AAGCTCGTCTTGCTCTGCAG 60.670 55.000 7.63 7.63 40.61 4.41
4953 5344 5.761003 CATGCCAGCATTATAAATCGTTGA 58.239 37.500 1.47 0.00 33.90 3.18
4957 5348 5.560953 GCCAGCATTATAAATCGTTGAGGTC 60.561 44.000 0.00 0.00 0.00 3.85
4995 5920 8.656806 ACTTAAATATCGGGGATCTAAACATCA 58.343 33.333 0.00 0.00 0.00 3.07
5007 5932 7.040409 GGGATCTAAACATCACAACTTCAAACT 60.040 37.037 0.00 0.00 0.00 2.66
5008 5933 8.017946 GGATCTAAACATCACAACTTCAAACTC 58.982 37.037 0.00 0.00 0.00 3.01
5009 5934 8.682936 ATCTAAACATCACAACTTCAAACTCT 57.317 30.769 0.00 0.00 0.00 3.24
5022 5947 7.032377 ACTTCAAACTCTTCCTTTCATGAAC 57.968 36.000 7.89 0.00 0.00 3.18
5126 6052 1.448119 TATGCAGCCTCTCCGACGAG 61.448 60.000 0.00 0.00 37.48 4.18
5168 6094 0.884704 TCTTCGGTGCTGCAAGTTCC 60.885 55.000 2.77 0.00 35.30 3.62
5172 6098 4.389576 GTGCTGCAAGTTCCCGCG 62.390 66.667 2.77 0.00 35.30 6.46
5220 6146 0.599204 GACCAGCGACAAGACGGAAA 60.599 55.000 0.00 0.00 0.00 3.13
5225 6151 0.454452 GCGACAAGACGGAAAATGGC 60.454 55.000 0.00 0.00 0.00 4.40
5253 6179 1.209504 TGATCCTTTCCATCGACCACC 59.790 52.381 0.00 0.00 0.00 4.61
5276 6202 0.667487 ACAAGATGTGCCGAGACGTG 60.667 55.000 0.00 0.00 0.00 4.49
5294 6220 2.361737 GCCAAGGCCAGGTTCTCC 60.362 66.667 14.92 0.00 34.56 3.71
5384 6310 1.671379 GAACTCCCACCGGTTGAGC 60.671 63.158 24.30 10.48 0.00 4.26
5439 6365 1.154338 GACAAGCTGTGCGTCATGC 60.154 57.895 0.00 0.00 46.70 4.06
5463 6389 2.363788 TGTTGAGTAGCGGCTAGTTG 57.636 50.000 17.87 0.00 0.00 3.16
5494 6420 6.694877 TGCTAATGTACTGTAGGACTGTAG 57.305 41.667 0.00 0.00 34.03 2.74
5518 6444 2.028020 AGCCAGCCACAACTAAGTACTC 60.028 50.000 0.00 0.00 0.00 2.59
5519 6445 2.935676 GCCAGCCACAACTAAGTACTCC 60.936 54.545 0.00 0.00 0.00 3.85
5520 6446 2.301870 CCAGCCACAACTAAGTACTCCA 59.698 50.000 0.00 0.00 0.00 3.86
5521 6447 3.055094 CCAGCCACAACTAAGTACTCCAT 60.055 47.826 0.00 0.00 0.00 3.41
5522 6448 4.184629 CAGCCACAACTAAGTACTCCATC 58.815 47.826 0.00 0.00 0.00 3.51
5523 6449 3.197983 AGCCACAACTAAGTACTCCATCC 59.802 47.826 0.00 0.00 0.00 3.51
5524 6450 3.782046 CCACAACTAAGTACTCCATCCG 58.218 50.000 0.00 0.00 0.00 4.18
5525 6451 3.446161 CCACAACTAAGTACTCCATCCGA 59.554 47.826 0.00 0.00 0.00 4.55
5526 6452 4.081862 CCACAACTAAGTACTCCATCCGAA 60.082 45.833 0.00 0.00 0.00 4.30
5527 6453 5.475719 CACAACTAAGTACTCCATCCGAAA 58.524 41.667 0.00 0.00 0.00 3.46
5528 6454 5.929992 CACAACTAAGTACTCCATCCGAAAA 59.070 40.000 0.00 0.00 0.00 2.29
5529 6455 6.594159 CACAACTAAGTACTCCATCCGAAAAT 59.406 38.462 0.00 0.00 0.00 1.82
5530 6456 7.762615 CACAACTAAGTACTCCATCCGAAAATA 59.237 37.037 0.00 0.00 0.00 1.40
5531 6457 7.763071 ACAACTAAGTACTCCATCCGAAAATAC 59.237 37.037 0.00 0.00 0.00 1.89
5532 6458 7.657023 ACTAAGTACTCCATCCGAAAATACT 57.343 36.000 0.00 0.00 0.00 2.12
5533 6459 8.075761 ACTAAGTACTCCATCCGAAAATACTT 57.924 34.615 0.00 0.00 35.93 2.24
5534 6460 7.980099 ACTAAGTACTCCATCCGAAAATACTTG 59.020 37.037 0.00 0.00 34.26 3.16
5535 6461 6.295719 AGTACTCCATCCGAAAATACTTGT 57.704 37.500 0.00 0.00 0.00 3.16
5536 6462 6.338937 AGTACTCCATCCGAAAATACTTGTC 58.661 40.000 0.00 0.00 0.00 3.18
5537 6463 5.160607 ACTCCATCCGAAAATACTTGTCA 57.839 39.130 0.00 0.00 0.00 3.58
5538 6464 5.745227 ACTCCATCCGAAAATACTTGTCAT 58.255 37.500 0.00 0.00 0.00 3.06
5539 6465 5.817816 ACTCCATCCGAAAATACTTGTCATC 59.182 40.000 0.00 0.00 0.00 2.92
5540 6466 5.739959 TCCATCCGAAAATACTTGTCATCA 58.260 37.500 0.00 0.00 0.00 3.07
5541 6467 6.176896 TCCATCCGAAAATACTTGTCATCAA 58.823 36.000 0.00 0.00 0.00 2.57
5542 6468 6.657117 TCCATCCGAAAATACTTGTCATCAAA 59.343 34.615 0.00 0.00 32.87 2.69
5543 6469 7.175816 TCCATCCGAAAATACTTGTCATCAAAA 59.824 33.333 0.00 0.00 32.87 2.44
5544 6470 7.975616 CCATCCGAAAATACTTGTCATCAAAAT 59.024 33.333 0.00 0.00 32.87 1.82
5545 6471 9.357652 CATCCGAAAATACTTGTCATCAAAATT 57.642 29.630 0.00 0.00 32.87 1.82
5546 6472 8.741101 TCCGAAAATACTTGTCATCAAAATTG 57.259 30.769 0.00 0.00 32.87 2.32
5547 6473 8.572185 TCCGAAAATACTTGTCATCAAAATTGA 58.428 29.630 0.00 0.00 42.14 2.57
5614 6540 9.757227 TTTAGTTTTAACCATTTTGATGACAGG 57.243 29.630 0.00 0.00 0.00 4.00
5615 6541 7.360113 AGTTTTAACCATTTTGATGACAGGT 57.640 32.000 0.00 0.00 0.00 4.00
5616 6542 8.472007 AGTTTTAACCATTTTGATGACAGGTA 57.528 30.769 0.00 0.00 0.00 3.08
5617 6543 9.088987 AGTTTTAACCATTTTGATGACAGGTAT 57.911 29.630 0.00 0.00 0.00 2.73
5618 6544 9.705290 GTTTTAACCATTTTGATGACAGGTATT 57.295 29.630 0.00 0.00 0.00 1.89
5620 6546 9.921637 TTTAACCATTTTGATGACAGGTATTTC 57.078 29.630 0.00 0.00 0.00 2.17
5621 6547 6.530019 ACCATTTTGATGACAGGTATTTCC 57.470 37.500 0.00 0.00 0.00 3.13
5622 6548 5.125417 ACCATTTTGATGACAGGTATTTCCG 59.875 40.000 0.00 0.00 41.99 4.30
5623 6549 5.450412 CCATTTTGATGACAGGTATTTCCGG 60.450 44.000 0.00 0.00 41.99 5.14
5624 6550 4.561500 TTTGATGACAGGTATTTCCGGA 57.438 40.909 0.00 0.00 41.99 5.14
5625 6551 3.536956 TGATGACAGGTATTTCCGGAC 57.463 47.619 1.83 0.00 41.99 4.79
5626 6552 2.159156 TGATGACAGGTATTTCCGGACG 60.159 50.000 1.83 0.00 41.99 4.79
5627 6553 0.533491 TGACAGGTATTTCCGGACGG 59.467 55.000 1.83 3.96 41.99 4.79
5628 6554 0.819582 GACAGGTATTTCCGGACGGA 59.180 55.000 1.83 9.76 43.52 4.69
5629 6555 0.822164 ACAGGTATTTCCGGACGGAG 59.178 55.000 13.64 3.15 46.06 4.63
5630 6556 0.104304 CAGGTATTTCCGGACGGAGG 59.896 60.000 13.64 0.00 46.06 4.30
5631 6557 1.047034 AGGTATTTCCGGACGGAGGG 61.047 60.000 13.64 0.00 46.06 4.30
5632 6558 1.044790 GGTATTTCCGGACGGAGGGA 61.045 60.000 13.64 4.95 46.06 4.20
5633 6559 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5634 6560 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
5635 6561 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
5636 6562 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
5637 6563 2.832201 CCGGACGGAGGGAGTACC 60.832 72.222 4.40 0.00 37.50 3.34
5667 6593 4.122143 TGAAACAGAGGCAAAAGGTTTG 57.878 40.909 0.00 0.00 32.32 2.93
5675 6601 2.084610 GCAAAAGGTTTGCCTCATCC 57.915 50.000 13.49 0.00 46.33 3.51
5676 6602 1.344114 GCAAAAGGTTTGCCTCATCCA 59.656 47.619 13.49 0.00 46.33 3.41
5677 6603 2.027837 GCAAAAGGTTTGCCTCATCCAT 60.028 45.455 13.49 0.00 46.33 3.41
5678 6604 3.557686 GCAAAAGGTTTGCCTCATCCATT 60.558 43.478 13.49 0.00 46.33 3.16
5719 6645 6.264518 AGTTGTCCGGTTAATTGACAGAAAAT 59.735 34.615 0.00 0.00 39.89 1.82
5752 6678 2.472816 GTCACAAATTTGCCCACACAG 58.527 47.619 18.12 0.00 0.00 3.66
5768 6694 0.620700 ACAGGCGAATTACTCCCCCT 60.621 55.000 0.00 0.00 0.00 4.79
5769 6695 0.546598 CAGGCGAATTACTCCCCCTT 59.453 55.000 0.00 0.00 0.00 3.95
5770 6696 1.064685 CAGGCGAATTACTCCCCCTTT 60.065 52.381 0.00 0.00 0.00 3.11
5771 6697 1.639108 AGGCGAATTACTCCCCCTTTT 59.361 47.619 0.00 0.00 0.00 2.27
5791 6717 0.541764 TTTGAGTTGCCCACCATCCC 60.542 55.000 0.00 0.00 0.00 3.85
5792 6718 2.043953 GAGTTGCCCACCATCCCC 60.044 66.667 0.00 0.00 0.00 4.81
5793 6719 2.863484 AGTTGCCCACCATCCCCA 60.863 61.111 0.00 0.00 0.00 4.96
5794 6720 2.228841 GAGTTGCCCACCATCCCCAT 62.229 60.000 0.00 0.00 0.00 4.00
5795 6721 2.059786 GTTGCCCACCATCCCCATG 61.060 63.158 0.00 0.00 0.00 3.66
5796 6722 3.980333 TTGCCCACCATCCCCATGC 62.980 63.158 0.00 0.00 0.00 4.06
5797 6723 4.147587 GCCCACCATCCCCATGCT 62.148 66.667 0.00 0.00 0.00 3.79
5798 6724 2.123597 CCCACCATCCCCATGCTG 60.124 66.667 0.00 0.00 0.00 4.41
5800 6726 2.836360 CACCATCCCCATGCTGCC 60.836 66.667 0.00 0.00 0.00 4.85
5801 6727 3.025599 ACCATCCCCATGCTGCCT 61.026 61.111 0.00 0.00 0.00 4.75
5803 6729 2.764737 CCATCCCCATGCTGCCTCT 61.765 63.158 0.00 0.00 0.00 3.69
5804 6730 1.229359 CATCCCCATGCTGCCTCTT 59.771 57.895 0.00 0.00 0.00 2.85
5807 6733 0.913934 TCCCCATGCTGCCTCTTACA 60.914 55.000 0.00 0.00 0.00 2.41
5808 6734 0.184451 CCCCATGCTGCCTCTTACAT 59.816 55.000 0.00 0.00 0.00 2.29
5810 6736 2.498167 CCCATGCTGCCTCTTACATAC 58.502 52.381 0.00 0.00 0.00 2.39
5811 6737 2.105477 CCCATGCTGCCTCTTACATACT 59.895 50.000 0.00 0.00 0.00 2.12
5812 6738 3.136763 CCATGCTGCCTCTTACATACTG 58.863 50.000 0.00 0.00 0.00 2.74
5813 6739 2.988010 TGCTGCCTCTTACATACTGG 57.012 50.000 0.00 0.00 0.00 4.00
5814 6740 1.486310 TGCTGCCTCTTACATACTGGG 59.514 52.381 0.00 0.00 0.00 4.45
5815 6741 1.811941 GCTGCCTCTTACATACTGGGC 60.812 57.143 0.00 0.00 39.93 5.36
5816 6742 1.486310 CTGCCTCTTACATACTGGGCA 59.514 52.381 0.00 0.00 45.81 5.36
5819 6745 2.158755 GCCTCTTACATACTGGGCATGT 60.159 50.000 0.00 0.00 39.82 3.21
5820 6746 3.685550 GCCTCTTACATACTGGGCATGTT 60.686 47.826 0.00 0.00 37.74 2.71
5821 6747 4.526970 CCTCTTACATACTGGGCATGTTT 58.473 43.478 0.00 0.00 37.74 2.83
5822 6748 4.336433 CCTCTTACATACTGGGCATGTTTG 59.664 45.833 0.00 0.00 37.74 2.93
5823 6749 5.172687 TCTTACATACTGGGCATGTTTGA 57.827 39.130 0.00 0.00 37.74 2.69
5837 6763 1.149627 TTTGACACGGGGGTTCTGG 59.850 57.895 0.00 0.00 0.00 3.86
5865 6791 1.063717 AGGTAGCAATTGGGGTCATGG 60.064 52.381 7.72 0.00 0.00 3.66
5866 6792 1.402787 GTAGCAATTGGGGTCATGGG 58.597 55.000 7.72 0.00 0.00 4.00
5867 6793 0.261402 TAGCAATTGGGGTCATGGGG 59.739 55.000 7.72 0.00 0.00 4.96
5868 6794 1.306056 GCAATTGGGGTCATGGGGT 60.306 57.895 7.72 0.00 0.00 4.95
5869 6795 1.329913 GCAATTGGGGTCATGGGGTC 61.330 60.000 7.72 0.00 0.00 4.46
5870 6796 0.336048 CAATTGGGGTCATGGGGTCT 59.664 55.000 0.00 0.00 0.00 3.85
5871 6797 1.568597 CAATTGGGGTCATGGGGTCTA 59.431 52.381 0.00 0.00 0.00 2.59
5883 6809 1.348775 GGGGTCTAGGCTGGCTTCAT 61.349 60.000 9.68 0.00 0.00 2.57
5910 6836 2.217353 GCAAGATGCGCGTGTATATG 57.783 50.000 6.97 0.00 31.71 1.78
5912 6838 2.159920 GCAAGATGCGCGTGTATATGAG 60.160 50.000 6.97 3.98 31.71 2.90
5913 6839 3.052745 CAAGATGCGCGTGTATATGAGT 58.947 45.455 6.97 0.00 0.00 3.41
5914 6840 2.666026 AGATGCGCGTGTATATGAGTG 58.334 47.619 6.97 0.00 0.00 3.51
5915 6841 1.125021 GATGCGCGTGTATATGAGTGC 59.875 52.381 6.97 3.80 40.17 4.40
5916 6842 0.102300 TGCGCGTGTATATGAGTGCT 59.898 50.000 8.43 0.00 40.38 4.40
5917 6843 1.209128 GCGCGTGTATATGAGTGCTT 58.791 50.000 8.43 0.00 37.18 3.91
5918 6844 1.071239 GCGCGTGTATATGAGTGCTTG 60.071 52.381 8.43 0.00 37.18 4.01
5919 6845 1.071239 CGCGTGTATATGAGTGCTTGC 60.071 52.381 0.00 0.00 0.00 4.01
5920 6846 1.071239 GCGTGTATATGAGTGCTTGCG 60.071 52.381 0.00 0.00 0.00 4.85
5921 6847 2.193447 CGTGTATATGAGTGCTTGCGT 58.807 47.619 0.00 0.00 0.00 5.24
5922 6848 2.216488 CGTGTATATGAGTGCTTGCGTC 59.784 50.000 0.00 0.00 0.00 5.19
5924 6850 3.243877 GTGTATATGAGTGCTTGCGTCTG 59.756 47.826 0.00 0.00 0.00 3.51
5925 6851 2.680312 ATATGAGTGCTTGCGTCTGT 57.320 45.000 0.00 0.00 0.00 3.41
5926 6852 3.801114 ATATGAGTGCTTGCGTCTGTA 57.199 42.857 0.00 0.00 0.00 2.74
5928 6854 0.673985 TGAGTGCTTGCGTCTGTACT 59.326 50.000 0.00 0.00 32.11 2.73
5930 6856 0.389391 AGTGCTTGCGTCTGTACTGT 59.611 50.000 0.00 0.00 0.00 3.55
5931 6857 0.508641 GTGCTTGCGTCTGTACTGTG 59.491 55.000 0.00 0.00 0.00 3.66
5932 6858 0.104120 TGCTTGCGTCTGTACTGTGT 59.896 50.000 0.00 0.00 0.00 3.72
5933 6859 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
5935 6861 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
5936 6862 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
5938 6864 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
5990 6916 0.476771 TTTTCCAGGAGAAAGGCCGT 59.523 50.000 0.00 0.00 45.11 5.68
5991 6917 1.354101 TTTCCAGGAGAAAGGCCGTA 58.646 50.000 0.00 0.00 39.60 4.02
5992 6918 0.902531 TTCCAGGAGAAAGGCCGTAG 59.097 55.000 0.00 0.00 0.00 3.51
5993 6919 4.004226 TTTCCAGGAGAAAGGCCGTAGG 62.004 54.545 0.00 0.00 45.74 3.18
6039 6970 2.293399 GCAAATCGAACACCTCCTGTTT 59.707 45.455 0.00 0.00 43.60 2.83
6050 6981 2.814336 ACCTCCTGTTTTCGAATTGCTC 59.186 45.455 0.00 0.00 0.00 4.26
6052 6983 2.159382 TCCTGTTTTCGAATTGCTCCC 58.841 47.619 0.00 0.00 0.00 4.30
6062 6993 3.645268 ATTGCTCCCAACGGCCTCC 62.645 63.158 0.00 0.00 32.95 4.30
6077 7008 0.039165 CCTCCGAGGCTTGCAAAAAC 60.039 55.000 0.18 0.00 0.00 2.43
6090 7096 5.445806 GCTTGCAAAAACTTGTTTGGTACTG 60.446 40.000 0.00 0.00 38.64 2.74
6132 7138 5.367060 AGTCTAGAAACCCAGTCCAATATCC 59.633 44.000 0.00 0.00 0.00 2.59
6161 7167 6.395629 AGCATTCCATCTTTCTCAAAATGTG 58.604 36.000 0.00 0.00 0.00 3.21
6196 7209 4.023536 ACATGCGGTCAACGTCTTAAAAAT 60.024 37.500 0.00 0.00 46.52 1.82
6203 7216 6.689669 CGGTCAACGTCTTAAAAATGTTTTCT 59.310 34.615 0.00 0.00 37.93 2.52
6240 7253 5.479716 ACGTCTTAAAACTTCAACCACTG 57.520 39.130 0.00 0.00 0.00 3.66
6313 7326 5.665812 AGTATTTCCTTGCATACTACTCCCA 59.334 40.000 0.00 0.00 34.95 4.37
6348 7362 3.807622 TCTTGTCGTGGCTTTAGTTCAAG 59.192 43.478 0.00 0.00 34.35 3.02
6503 7524 8.512138 CAACTTAAATTTTGAGACGGGAATACT 58.488 33.333 7.82 0.00 0.00 2.12
6508 7529 4.627611 TTTGAGACGGGAATACTAGTCG 57.372 45.455 0.00 0.00 38.53 4.18
6532 7553 7.280876 TCGAATTTTGAGAAGATGGGAATACTG 59.719 37.037 0.00 0.00 0.00 2.74
6595 7616 7.988599 CCAATCATGGTTTCCATTATTGTTCAT 59.011 33.333 22.77 0.00 46.16 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 91 9.807649 CCTCCGAAAAGAAAATGAAAATCATAT 57.192 29.630 0.00 0.00 35.76 1.78
89 92 8.250332 CCCTCCGAAAAGAAAATGAAAATCATA 58.750 33.333 0.00 0.00 35.76 2.15
97 100 3.824443 GGTTCCCTCCGAAAAGAAAATGA 59.176 43.478 0.00 0.00 30.39 2.57
108 111 3.585732 ACATCTTTAAAGGTTCCCTCCGA 59.414 43.478 15.13 0.00 30.89 4.55
109 112 3.689649 CACATCTTTAAAGGTTCCCTCCG 59.310 47.826 15.13 0.00 30.89 4.63
110 113 4.918588 TCACATCTTTAAAGGTTCCCTCC 58.081 43.478 15.13 0.00 30.89 4.30
155 158 1.430632 CTCCGAACATGCATGTGGC 59.569 57.895 31.98 24.11 41.61 5.01
202 205 2.030562 AACGGTGGTTCTGGCTCG 59.969 61.111 0.00 0.00 0.00 5.03
231 234 2.039418 GGAAGGTGGTTCTGGCTTTTT 58.961 47.619 0.00 0.00 35.25 1.94
232 235 1.704641 GGAAGGTGGTTCTGGCTTTT 58.295 50.000 0.00 0.00 35.25 2.27
233 236 0.178961 GGGAAGGTGGTTCTGGCTTT 60.179 55.000 0.00 0.00 35.25 3.51
235 238 2.539081 GGGGAAGGTGGTTCTGGCT 61.539 63.158 0.00 0.00 35.25 4.75
236 239 2.035783 GGGGAAGGTGGTTCTGGC 59.964 66.667 0.00 0.00 35.25 4.85
238 241 0.912486 CTAGGGGGAAGGTGGTTCTG 59.088 60.000 0.00 0.00 35.25 3.02
239 242 0.914902 GCTAGGGGGAAGGTGGTTCT 60.915 60.000 0.00 0.00 35.25 3.01
240 243 1.608154 GCTAGGGGGAAGGTGGTTC 59.392 63.158 0.00 0.00 0.00 3.62
241 244 1.929088 GGCTAGGGGGAAGGTGGTT 60.929 63.158 0.00 0.00 0.00 3.67
242 245 2.286197 GGCTAGGGGGAAGGTGGT 60.286 66.667 0.00 0.00 0.00 4.16
243 246 2.042930 AGGCTAGGGGGAAGGTGG 59.957 66.667 0.00 0.00 0.00 4.61
244 247 2.435693 CGAGGCTAGGGGGAAGGTG 61.436 68.421 0.00 0.00 0.00 4.00
245 248 2.041819 CGAGGCTAGGGGGAAGGT 60.042 66.667 0.00 0.00 0.00 3.50
246 249 2.844839 CCGAGGCTAGGGGGAAGG 60.845 72.222 5.64 0.00 0.00 3.46
247 250 2.844839 CCCGAGGCTAGGGGGAAG 60.845 72.222 23.89 0.00 45.14 3.46
253 256 0.406361 AGGATAGACCCGAGGCTAGG 59.594 60.000 6.69 6.69 40.05 3.02
254 257 1.353022 AGAGGATAGACCCGAGGCTAG 59.647 57.143 0.00 0.00 40.05 3.42
255 258 1.351683 GAGAGGATAGACCCGAGGCTA 59.648 57.143 0.00 0.00 40.05 3.93
837 840 1.513622 GTCCTCTTCCTCCTCGTGC 59.486 63.158 0.00 0.00 0.00 5.34
838 841 0.677098 TCGTCCTCTTCCTCCTCGTG 60.677 60.000 0.00 0.00 0.00 4.35
840 843 0.736053 CTTCGTCCTCTTCCTCCTCG 59.264 60.000 0.00 0.00 0.00 4.63
852 858 0.450983 CACCGTACTCCTCTTCGTCC 59.549 60.000 0.00 0.00 0.00 4.79
855 861 0.733729 CCTCACCGTACTCCTCTTCG 59.266 60.000 0.00 0.00 0.00 3.79
873 879 1.739049 CTCCACGAGCTCCTCATCC 59.261 63.158 8.47 0.00 0.00 3.51
1000 1006 1.340211 ACGAGCGAGAGATATAGGGGG 60.340 57.143 0.00 0.00 0.00 5.40
1002 1008 2.420722 GGAACGAGCGAGAGATATAGGG 59.579 54.545 0.00 0.00 0.00 3.53
1004 1010 3.750639 GGGAACGAGCGAGAGATATAG 57.249 52.381 0.00 0.00 0.00 1.31
1019 1025 2.097466 CACATCATACAAAGCCGGGAAC 59.903 50.000 2.18 0.00 0.00 3.62
1020 1026 2.026729 TCACATCATACAAAGCCGGGAA 60.027 45.455 2.18 0.00 0.00 3.97
1021 1027 1.557371 TCACATCATACAAAGCCGGGA 59.443 47.619 2.18 0.00 0.00 5.14
1022 1028 2.036958 TCACATCATACAAAGCCGGG 57.963 50.000 2.18 0.00 0.00 5.73
1023 1029 2.287188 GCATCACATCATACAAAGCCGG 60.287 50.000 0.00 0.00 0.00 6.13
1024 1030 2.615447 AGCATCACATCATACAAAGCCG 59.385 45.455 0.00 0.00 0.00 5.52
1025 1031 4.818546 ACTAGCATCACATCATACAAAGCC 59.181 41.667 0.00 0.00 0.00 4.35
1026 1032 5.998454 ACTAGCATCACATCATACAAAGC 57.002 39.130 0.00 0.00 0.00 3.51
1027 1033 6.722301 CCAACTAGCATCACATCATACAAAG 58.278 40.000 0.00 0.00 0.00 2.77
1028 1034 5.066375 GCCAACTAGCATCACATCATACAAA 59.934 40.000 0.00 0.00 0.00 2.83
1029 1035 4.576053 GCCAACTAGCATCACATCATACAA 59.424 41.667 0.00 0.00 0.00 2.41
1030 1036 4.129380 GCCAACTAGCATCACATCATACA 58.871 43.478 0.00 0.00 0.00 2.29
1031 1037 3.185188 CGCCAACTAGCATCACATCATAC 59.815 47.826 0.00 0.00 0.00 2.39
1032 1038 3.392882 CGCCAACTAGCATCACATCATA 58.607 45.455 0.00 0.00 0.00 2.15
1033 1039 2.216046 CGCCAACTAGCATCACATCAT 58.784 47.619 0.00 0.00 0.00 2.45
1036 1042 0.253044 ACCGCCAACTAGCATCACAT 59.747 50.000 0.00 0.00 0.00 3.21
1038 1044 1.421410 CGACCGCCAACTAGCATCAC 61.421 60.000 0.00 0.00 0.00 3.06
1047 1053 1.134694 GCTCAATTCGACCGCCAAC 59.865 57.895 0.00 0.00 0.00 3.77
1070 1076 2.427232 ATTCGAACAAACGGACGAGA 57.573 45.000 0.00 0.00 36.22 4.04
1180 1186 3.157680 CCCTTCTTCCCGGTGTGT 58.842 61.111 0.00 0.00 0.00 3.72
1186 1192 1.147153 GATCCAGCCCTTCTTCCCG 59.853 63.158 0.00 0.00 0.00 5.14
1250 1256 1.808945 GTGACTCAGGCACAGAAATGG 59.191 52.381 5.49 0.00 36.31 3.16
1312 1318 3.587797 TTGCTGCTAACTACGCTAACT 57.412 42.857 0.00 0.00 0.00 2.24
1319 1325 9.503427 CCATAAATTAACTTTGCTGCTAACTAC 57.497 33.333 0.00 0.00 0.00 2.73
1327 1337 6.251376 GCTCGTTCCATAAATTAACTTTGCTG 59.749 38.462 0.00 0.00 0.00 4.41
1410 1436 1.064003 TCTGCCTGGCCTAAGAACAA 58.936 50.000 17.53 0.00 0.00 2.83
1547 1573 1.895131 AGTGGGTGAAAACATCATGGC 59.105 47.619 0.00 0.00 40.97 4.40
1565 1591 4.510571 ACGAAACACACCAGAAACTTAGT 58.489 39.130 0.00 0.00 0.00 2.24
1605 1631 7.201679 CCTTACTCATGATGTGGTCTCATTTTC 60.202 40.741 0.00 0.00 31.00 2.29
1638 1664 3.020984 TGTAGGCGTGATATCACTGTGA 58.979 45.455 28.51 13.60 44.34 3.58
1652 1678 4.100529 CAGCAATTCAATTCTTGTAGGCG 58.899 43.478 0.00 0.00 0.00 5.52
1673 1716 7.227873 TGTACTTTTCATCCAACTATCCAACA 58.772 34.615 0.00 0.00 0.00 3.33
1683 1726 6.945435 ACATACCACATGTACTTTTCATCCAA 59.055 34.615 0.00 0.00 30.62 3.53
1696 1739 1.176527 GCCAGCAACATACCACATGT 58.823 50.000 0.00 0.00 0.00 3.21
1908 1951 8.635765 ACAAGTTCCAACATTATCAGTAACAT 57.364 30.769 0.00 0.00 0.00 2.71
1914 1957 7.596494 ACAATGACAAGTTCCAACATTATCAG 58.404 34.615 0.00 0.00 31.40 2.90
1917 1960 6.646240 GCAACAATGACAAGTTCCAACATTAT 59.354 34.615 0.00 0.00 31.40 1.28
1922 1965 2.788786 CGCAACAATGACAAGTTCCAAC 59.211 45.455 0.00 0.00 0.00 3.77
1958 2001 6.441284 TGGTGCTTACTTATAGTGGGTAGAAA 59.559 38.462 0.00 0.00 0.00 2.52
1978 2021 2.484264 GTGTACTTTCTGATGGTGGTGC 59.516 50.000 0.00 0.00 0.00 5.01
1993 2036 6.590292 GCGTAATATATCAATGCCAGTGTACT 59.410 38.462 0.00 0.00 0.00 2.73
2009 2052 5.104859 TGGAGGAAACAACCAGCGTAATATA 60.105 40.000 0.00 0.00 34.90 0.86
2016 2059 2.009774 CTATGGAGGAAACAACCAGCG 58.990 52.381 0.00 0.00 41.06 5.18
2064 2111 6.097839 GGAAGGGAAACAAAAGGACTAACTTT 59.902 38.462 0.00 0.00 42.17 2.66
2195 2242 6.127619 GGAGTTGAATCCGGATTTTCTGAATT 60.128 38.462 29.74 14.16 0.00 2.17
2208 2255 0.178068 ACGGGATGGAGTTGAATCCG 59.822 55.000 0.00 0.00 42.90 4.18
2305 2352 1.202940 ACCTCAAGAAGACCCTTTGGC 60.203 52.381 0.00 0.00 33.59 4.52
2329 2376 5.462530 TCTTTGATTTCTCAGGACGTGTA 57.537 39.130 0.00 0.00 31.68 2.90
2391 2438 4.460948 AAAAGGGATCATGTCATGCAAC 57.539 40.909 8.03 2.19 0.00 4.17
2455 2519 0.605589 ACAGTCAGGAGTGCTGCTAC 59.394 55.000 6.80 0.86 35.19 3.58
2456 2520 1.001293 CAACAGTCAGGAGTGCTGCTA 59.999 52.381 6.80 0.00 35.19 3.49
2511 2581 6.523840 ACATTTCAACCACATATGCTTGTTT 58.476 32.000 1.58 0.00 0.00 2.83
2514 2584 5.712004 TGACATTTCAACCACATATGCTTG 58.288 37.500 1.58 2.55 0.00 4.01
2515 2585 5.981088 TGACATTTCAACCACATATGCTT 57.019 34.783 1.58 0.00 0.00 3.91
2526 2596 6.259550 AGAACCTAAGCATGACATTTCAAC 57.740 37.500 0.00 0.00 34.61 3.18
2537 2607 3.310193 GGAGGGAGTAGAACCTAAGCAT 58.690 50.000 0.00 0.00 37.18 3.79
2543 2613 1.619160 GGAACGGAGGGAGTAGAACCT 60.619 57.143 0.00 0.00 40.54 3.50
2544 2614 0.822811 GGAACGGAGGGAGTAGAACC 59.177 60.000 0.00 0.00 0.00 3.62
2546 2616 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
2548 2618 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
2549 2619 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2550 2620 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2551 2621 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2552 2622 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2553 2623 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2554 2624 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2555 2625 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2556 2626 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2557 2627 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2572 2642 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
2573 2643 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
2574 2644 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
2577 2647 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
2581 2651 9.725019 TGTATGTAGTCATTTGTTGAAATCTCT 57.275 29.630 0.00 0.00 35.70 3.10
2585 2655 9.410556 GCTTTGTATGTAGTCATTTGTTGAAAT 57.589 29.630 0.00 0.00 35.70 2.17
2586 2656 8.409371 TGCTTTGTATGTAGTCATTTGTTGAAA 58.591 29.630 0.00 0.00 35.70 2.69
2587 2657 7.935520 TGCTTTGTATGTAGTCATTTGTTGAA 58.064 30.769 0.00 0.00 35.70 2.69
2588 2658 7.503521 TGCTTTGTATGTAGTCATTTGTTGA 57.496 32.000 0.00 0.00 35.70 3.18
2589 2659 8.572828 TTTGCTTTGTATGTAGTCATTTGTTG 57.427 30.769 0.00 0.00 35.70 3.33
2590 2660 9.762933 ATTTTGCTTTGTATGTAGTCATTTGTT 57.237 25.926 0.00 0.00 35.70 2.83
2591 2661 9.195411 CATTTTGCTTTGTATGTAGTCATTTGT 57.805 29.630 0.00 0.00 35.70 2.83
2592 2662 9.409312 TCATTTTGCTTTGTATGTAGTCATTTG 57.591 29.630 0.00 0.00 35.70 2.32
2593 2663 9.630098 CTCATTTTGCTTTGTATGTAGTCATTT 57.370 29.630 0.00 0.00 35.70 2.32
2594 2664 8.796475 ACTCATTTTGCTTTGTATGTAGTCATT 58.204 29.630 0.00 0.00 35.70 2.57
2595 2665 8.239314 CACTCATTTTGCTTTGTATGTAGTCAT 58.761 33.333 0.00 0.00 38.00 3.06
2596 2666 7.443879 TCACTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
2597 2667 7.806690 TCACTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
2598 2668 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
2599 2669 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
2600 2670 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
2601 2671 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
2602 2672 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
2603 2673 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
2604 2674 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
2605 2675 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
2606 2676 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
2607 2677 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
2638 2708 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2640 2710 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2641 2711 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2642 2712 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2643 2713 8.546322 AGACTACCACATACGGATGTATATAGA 58.454 37.037 22.62 5.04 44.82 1.98
2644 2714 8.734218 AGACTACCACATACGGATGTATATAG 57.266 38.462 14.23 16.35 44.82 1.31
2646 2716 9.696572 AATAGACTACCACATACGGATGTATAT 57.303 33.333 14.23 4.37 44.82 0.86
2647 2717 9.524496 AAATAGACTACCACATACGGATGTATA 57.476 33.333 14.23 8.27 44.82 1.47
2648 2718 8.304596 CAAATAGACTACCACATACGGATGTAT 58.695 37.037 14.23 7.46 44.82 2.29
2649 2719 7.503230 TCAAATAGACTACCACATACGGATGTA 59.497 37.037 14.23 0.00 44.82 2.29
2651 2721 6.745116 TCAAATAGACTACCACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
2652 2722 6.971726 TCAAATAGACTACCACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
2653 2723 6.778834 TTCAAATAGACTACCACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
2654 2724 7.926555 AGATTTCAAATAGACTACCACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
2655 2725 8.873215 AGATTTCAAATAGACTACCACATACG 57.127 34.615 0.00 0.00 0.00 3.06
2683 2753 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2684 2754 7.886446 TCCTCCGTTCCTAAATATTTGTCTTTT 59.114 33.333 11.05 0.00 0.00 2.27
2685 2755 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
2686 2756 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
2687 2757 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
2688 2758 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2689 2759 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2690 2760 8.726870 TTACTTCCTCCGTTCCTAAATATTTG 57.273 34.615 11.05 1.40 0.00 2.32
2691 2761 9.170734 GTTTACTTCCTCCGTTCCTAAATATTT 57.829 33.333 5.89 5.89 0.00 1.40
2692 2762 8.323567 TGTTTACTTCCTCCGTTCCTAAATATT 58.676 33.333 0.00 0.00 0.00 1.28
2693 2763 7.854337 TGTTTACTTCCTCCGTTCCTAAATAT 58.146 34.615 0.00 0.00 0.00 1.28
2694 2764 7.243604 TGTTTACTTCCTCCGTTCCTAAATA 57.756 36.000 0.00 0.00 0.00 1.40
2695 2765 6.117975 TGTTTACTTCCTCCGTTCCTAAAT 57.882 37.500 0.00 0.00 0.00 1.40
2696 2766 5.549742 TGTTTACTTCCTCCGTTCCTAAA 57.450 39.130 0.00 0.00 0.00 1.85
2697 2767 5.305128 TCTTGTTTACTTCCTCCGTTCCTAA 59.695 40.000 0.00 0.00 0.00 2.69
2698 2768 4.834496 TCTTGTTTACTTCCTCCGTTCCTA 59.166 41.667 0.00 0.00 0.00 2.94
2699 2769 3.644738 TCTTGTTTACTTCCTCCGTTCCT 59.355 43.478 0.00 0.00 0.00 3.36
2700 2770 3.999046 TCTTGTTTACTTCCTCCGTTCC 58.001 45.455 0.00 0.00 0.00 3.62
2701 2771 5.699458 TCAATCTTGTTTACTTCCTCCGTTC 59.301 40.000 0.00 0.00 0.00 3.95
2702 2772 5.617252 TCAATCTTGTTTACTTCCTCCGTT 58.383 37.500 0.00 0.00 0.00 4.44
2703 2773 5.223449 TCAATCTTGTTTACTTCCTCCGT 57.777 39.130 0.00 0.00 0.00 4.69
2704 2774 5.447818 GCATCAATCTTGTTTACTTCCTCCG 60.448 44.000 0.00 0.00 0.00 4.63
2705 2775 5.415701 TGCATCAATCTTGTTTACTTCCTCC 59.584 40.000 0.00 0.00 0.00 4.30
2706 2776 6.500684 TGCATCAATCTTGTTTACTTCCTC 57.499 37.500 0.00 0.00 0.00 3.71
2707 2777 6.899393 TTGCATCAATCTTGTTTACTTCCT 57.101 33.333 0.00 0.00 0.00 3.36
2708 2778 7.315142 TCATTGCATCAATCTTGTTTACTTCC 58.685 34.615 0.00 0.00 31.05 3.46
2709 2779 8.922058 ATCATTGCATCAATCTTGTTTACTTC 57.078 30.769 0.00 0.00 31.05 3.01
2710 2780 8.746530 AGATCATTGCATCAATCTTGTTTACTT 58.253 29.630 0.00 0.00 31.05 2.24
2711 2781 8.188799 CAGATCATTGCATCAATCTTGTTTACT 58.811 33.333 0.00 0.00 31.05 2.24
2712 2782 8.186163 TCAGATCATTGCATCAATCTTGTTTAC 58.814 33.333 0.00 0.00 31.05 2.01
2716 2786 5.221067 GCTCAGATCATTGCATCAATCTTGT 60.221 40.000 0.00 0.00 31.05 3.16
2794 2865 6.942576 TCTTCTTTTCCTTCCAATCCTGTAAG 59.057 38.462 0.00 0.00 0.00 2.34
2942 3013 6.036953 TGTTTGAACAATTGAAAGTCAATGCC 59.963 34.615 13.59 7.69 45.57 4.40
3065 3136 9.988350 AAAATATTTAGTGAACGTGATGATGAC 57.012 29.630 0.01 0.00 0.00 3.06
3143 3214 9.712305 TTGTTTGACCAAAATAACAGAAAGAAA 57.288 25.926 0.00 0.00 32.67 2.52
3144 3215 9.883142 ATTGTTTGACCAAAATAACAGAAAGAA 57.117 25.926 0.00 0.00 32.46 2.52
3186 3257 7.175104 TGCAGGTTAGATTAAAAACTCAGGAT 58.825 34.615 0.00 0.00 0.00 3.24
3205 3276 1.257743 TCGAAGAGTAAGCTGCAGGT 58.742 50.000 13.85 13.85 0.00 4.00
3349 3423 5.351465 TCTCACGACCTTTGCTAAATTCATC 59.649 40.000 0.00 0.00 0.00 2.92
3350 3424 5.245531 TCTCACGACCTTTGCTAAATTCAT 58.754 37.500 0.00 0.00 0.00 2.57
3387 3461 7.000575 TGTAATAAGTACGATTGCTGCTTTC 57.999 36.000 0.00 0.00 35.23 2.62
3406 3480 3.197766 TCAGAGTCGGAGCCATTTGTAAT 59.802 43.478 0.00 0.00 0.00 1.89
3420 3494 3.739810 CAGCATCCACAATATCAGAGTCG 59.260 47.826 0.00 0.00 0.00 4.18
3488 3562 2.104967 AGTGGCCATCATGAACAATGG 58.895 47.619 9.72 8.47 44.42 3.16
3493 3567 1.108776 ATGCAGTGGCCATCATGAAC 58.891 50.000 9.72 0.00 40.13 3.18
3531 3605 6.014327 ACATTTGATTGGTGCCACTAAATTCT 60.014 34.615 0.00 0.00 0.00 2.40
3536 3610 5.321102 AGTACATTTGATTGGTGCCACTAA 58.679 37.500 0.00 0.00 0.00 2.24
3541 3615 5.391312 AGAAAGTACATTTGATTGGTGCC 57.609 39.130 0.00 0.00 0.00 5.01
3590 3664 6.860023 GCAGCATGGTCATACTCATAATTTTC 59.140 38.462 0.00 0.00 35.86 2.29
3593 3667 4.763793 GGCAGCATGGTCATACTCATAATT 59.236 41.667 0.00 0.00 35.86 1.40
3594 3668 4.202493 TGGCAGCATGGTCATACTCATAAT 60.202 41.667 0.00 0.00 35.86 1.28
3601 3675 2.816087 CCTTATGGCAGCATGGTCATAC 59.184 50.000 5.95 0.00 35.25 2.39
3602 3676 2.710471 TCCTTATGGCAGCATGGTCATA 59.290 45.455 0.00 0.00 34.40 2.15
3603 3677 1.496001 TCCTTATGGCAGCATGGTCAT 59.504 47.619 0.00 0.00 36.90 3.06
3604 3678 0.918258 TCCTTATGGCAGCATGGTCA 59.082 50.000 0.00 0.00 35.86 4.02
3605 3679 1.312815 GTCCTTATGGCAGCATGGTC 58.687 55.000 0.00 0.00 35.86 4.02
3606 3680 0.625316 TGTCCTTATGGCAGCATGGT 59.375 50.000 0.00 0.00 35.86 3.55
3615 3689 3.637229 ACTATGTCGGTCTGTCCTTATGG 59.363 47.826 0.00 0.00 0.00 2.74
3649 3723 1.603678 GCAACTTCAGGCAACACATGG 60.604 52.381 0.00 0.00 41.41 3.66
3653 3727 0.592247 CACGCAACTTCAGGCAACAC 60.592 55.000 0.00 0.00 41.41 3.32
3658 3732 0.944386 TTCTTCACGCAACTTCAGGC 59.056 50.000 0.00 0.00 0.00 4.85
3664 3738 6.312918 ACGATTATTATGTTCTTCACGCAACT 59.687 34.615 0.00 0.00 0.00 3.16
3697 3771 7.308589 GGAAGAGCAAACTTAGCAGTTATCAAA 60.309 37.037 0.00 0.00 42.89 2.69
3702 3776 5.228945 AGGAAGAGCAAACTTAGCAGTTA 57.771 39.130 0.00 0.00 42.89 2.24
3708 3782 5.694910 TGAACGTAAGGAAGAGCAAACTTAG 59.305 40.000 0.00 0.00 46.39 2.18
3727 3801 7.921214 TCTGTATCTTAATTCTAGCCTTGAACG 59.079 37.037 0.00 0.00 0.00 3.95
3748 3822 9.368416 AGCATATTCTTGAATAGTACCTCTGTA 57.632 33.333 8.71 0.00 0.00 2.74
3749 3823 8.256356 AGCATATTCTTGAATAGTACCTCTGT 57.744 34.615 8.71 0.00 0.00 3.41
3750 3824 9.553064 AAAGCATATTCTTGAATAGTACCTCTG 57.447 33.333 8.71 2.69 0.00 3.35
3751 3825 9.553064 CAAAGCATATTCTTGAATAGTACCTCT 57.447 33.333 8.71 0.00 0.00 3.69
3752 3826 8.778358 CCAAAGCATATTCTTGAATAGTACCTC 58.222 37.037 8.71 0.00 0.00 3.85
3753 3827 8.275040 ACCAAAGCATATTCTTGAATAGTACCT 58.725 33.333 8.71 1.22 0.00 3.08
3754 3828 8.345565 CACCAAAGCATATTCTTGAATAGTACC 58.654 37.037 8.71 0.00 0.00 3.34
3897 4275 9.541143 AAACAAAAACGAATAAGATTTGTCCAT 57.459 25.926 3.05 0.00 41.79 3.41
3914 4292 5.580297 TCTTCAACCTGCATCAAACAAAAAC 59.420 36.000 0.00 0.00 0.00 2.43
3933 4311 7.895144 AGGGGGAGATATATGATTTTCTTCA 57.105 36.000 0.00 0.00 0.00 3.02
4017 4395 8.231692 TCTGATTGTCAAAACCAAAATAGTCA 57.768 30.769 0.00 0.00 0.00 3.41
4037 4415 4.384208 GGGCAATGTACTGTACCTTCTGAT 60.384 45.833 14.91 0.00 0.00 2.90
4058 4436 4.319177 GCCTGCATAAACTCATAGTAGGG 58.681 47.826 0.00 0.00 0.00 3.53
4066 4444 0.250234 AGAGCGCCTGCATAAACTCA 59.750 50.000 2.29 0.00 46.23 3.41
4076 4454 1.208614 GCAAAACAGAGAGCGCCTG 59.791 57.895 2.29 7.26 37.64 4.85
4080 4458 2.490328 TTTTGGCAAAACAGAGAGCG 57.510 45.000 20.81 0.00 0.00 5.03
4103 4481 4.065088 ACGAATAGTCACATTGCACACTT 58.935 39.130 0.00 0.00 0.00 3.16
4106 4484 4.513318 TGAAACGAATAGTCACATTGCACA 59.487 37.500 0.00 0.00 0.00 4.57
4107 4485 5.029650 TGAAACGAATAGTCACATTGCAC 57.970 39.130 0.00 0.00 0.00 4.57
4108 4486 5.681337 TTGAAACGAATAGTCACATTGCA 57.319 34.783 0.00 0.00 0.00 4.08
4109 4487 7.566858 AAATTGAAACGAATAGTCACATTGC 57.433 32.000 0.00 0.00 0.00 3.56
4150 4530 6.939163 AGAATGTGAACTCTAATGAAACTGCT 59.061 34.615 0.00 0.00 0.00 4.24
4264 4644 6.953520 TCCAGGTTCTCCATACATTTCAAAAT 59.046 34.615 0.00 0.00 35.89 1.82
4337 4717 3.682718 GCACTCCAGGCTACATGTACAAT 60.683 47.826 0.08 0.00 0.00 2.71
4392 4779 1.000896 CCCCCTTTTGCCACTCGAT 60.001 57.895 0.00 0.00 0.00 3.59
4410 4797 0.830648 TGAACATGACGGGGATCTCC 59.169 55.000 0.00 0.00 0.00 3.71
4454 4841 7.093814 ACAAACAAATTAGAGATAATGCTGGCA 60.094 33.333 0.00 0.00 0.00 4.92
4498 4886 4.574599 AAAAAGCAGAGTAGTTTGGCTG 57.425 40.909 0.00 0.00 34.56 4.85
4653 5041 0.958382 TGAAAATCGCCCCAGTTCCG 60.958 55.000 0.00 0.00 0.00 4.30
4715 5103 1.606480 CCTGCACATACTCTATGCCCG 60.606 57.143 0.00 0.00 39.79 6.13
4731 5119 2.033801 GGCACAACATGATCATACCTGC 59.966 50.000 8.15 12.09 0.00 4.85
4750 5138 1.132640 GAAACACGATGCGAGTGGC 59.867 57.895 10.10 0.00 43.41 5.01
4751 5139 1.635663 GGGAAACACGATGCGAGTGG 61.636 60.000 10.10 0.00 43.41 4.00
4754 5142 2.106683 GGGGGAAACACGATGCGAG 61.107 63.158 0.00 0.00 0.00 5.03
4845 5233 3.869832 GCTTAGGTAGCCGGAAGTTTTAG 59.130 47.826 5.05 0.00 44.48 1.85
4863 5251 0.603065 TGCAGAGCAAGACGAGCTTA 59.397 50.000 0.00 0.00 43.58 3.09
4869 5257 1.624865 GCAGACTGCAGAGCAAGACG 61.625 60.000 23.35 0.64 44.26 4.18
4883 5271 3.304057 GGCTTAAGTGTTCAGTTGCAGAC 60.304 47.826 4.02 0.00 0.00 3.51
4957 5348 8.721478 CCCCGATATTTAAGTTCATATGTTGAG 58.279 37.037 1.90 0.00 35.27 3.02
4965 5356 9.503399 GTTTAGATCCCCGATATTTAAGTTCAT 57.497 33.333 0.00 0.00 0.00 2.57
4980 5371 5.253330 TGAAGTTGTGATGTTTAGATCCCC 58.747 41.667 0.00 0.00 0.00 4.81
4995 5920 6.603201 TCATGAAAGGAAGAGTTTGAAGTTGT 59.397 34.615 0.00 0.00 0.00 3.32
5049 5974 1.069636 CAGACAAAGAAAGACGGCAGC 60.070 52.381 0.00 0.00 0.00 5.25
5054 5979 2.221055 CGGTTCCAGACAAAGAAAGACG 59.779 50.000 0.00 0.00 0.00 4.18
5055 5980 2.548480 CCGGTTCCAGACAAAGAAAGAC 59.452 50.000 0.00 0.00 0.00 3.01
5100 6026 1.001860 GGAGAGGCTGCATATCTGTCC 59.998 57.143 8.88 6.49 34.55 4.02
5126 6052 1.811645 GAGGATGCCCGAGGACTAGC 61.812 65.000 0.00 0.00 37.58 3.42
5220 6146 4.098501 GGAAAGGATCAAATCGAAGCCATT 59.901 41.667 0.00 0.00 0.00 3.16
5225 6151 4.811024 TCGATGGAAAGGATCAAATCGAAG 59.189 41.667 10.89 0.00 44.92 3.79
5253 6179 1.728971 GTCTCGGCACATCTTGTTCAG 59.271 52.381 0.00 0.00 0.00 3.02
5276 6202 2.361737 GAGAACCTGGCCTTGGCC 60.362 66.667 22.91 22.91 0.00 5.36
5384 6310 2.066262 AGAACGCTTGTAACATCGGTG 58.934 47.619 0.00 0.00 0.00 4.94
5439 6365 2.015736 AGCCGCTACTCAACAATCTG 57.984 50.000 0.00 0.00 0.00 2.90
5494 6420 3.268023 ACTTAGTTGTGGCTGGCTATC 57.732 47.619 2.00 0.00 0.00 2.08
5518 6444 6.435430 TTGATGACAAGTATTTTCGGATGG 57.565 37.500 0.00 0.00 0.00 3.51
5519 6445 8.915871 ATTTTGATGACAAGTATTTTCGGATG 57.084 30.769 0.00 0.00 37.32 3.51
5520 6446 9.357652 CAATTTTGATGACAAGTATTTTCGGAT 57.642 29.630 0.00 0.00 37.32 4.18
5521 6447 8.572185 TCAATTTTGATGACAAGTATTTTCGGA 58.428 29.630 0.00 0.00 37.32 4.55
5522 6448 8.741101 TCAATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
5588 6514 9.757227 CCTGTCATCAAAATGGTTAAAACTAAA 57.243 29.630 0.00 0.00 33.42 1.85
5589 6515 8.919145 ACCTGTCATCAAAATGGTTAAAACTAA 58.081 29.630 0.00 0.00 33.42 2.24
5590 6516 8.472007 ACCTGTCATCAAAATGGTTAAAACTA 57.528 30.769 0.00 0.00 33.42 2.24
5591 6517 7.360113 ACCTGTCATCAAAATGGTTAAAACT 57.640 32.000 0.00 0.00 33.42 2.66
5592 6518 9.705290 AATACCTGTCATCAAAATGGTTAAAAC 57.295 29.630 0.00 0.00 33.42 2.43
5594 6520 9.921637 GAAATACCTGTCATCAAAATGGTTAAA 57.078 29.630 0.00 0.00 33.42 1.52
5595 6521 8.527810 GGAAATACCTGTCATCAAAATGGTTAA 58.472 33.333 0.00 0.00 32.97 2.01
5596 6522 7.148154 CGGAAATACCTGTCATCAAAATGGTTA 60.148 37.037 0.00 0.00 36.31 2.85
5597 6523 6.350110 CGGAAATACCTGTCATCAAAATGGTT 60.350 38.462 0.00 0.00 36.31 3.67
5598 6524 5.125417 CGGAAATACCTGTCATCAAAATGGT 59.875 40.000 0.00 0.00 36.31 3.55
5599 6525 5.450412 CCGGAAATACCTGTCATCAAAATGG 60.450 44.000 0.00 0.00 36.31 3.16
5600 6526 5.356751 TCCGGAAATACCTGTCATCAAAATG 59.643 40.000 0.00 0.00 36.31 2.32
5601 6527 5.357032 GTCCGGAAATACCTGTCATCAAAAT 59.643 40.000 5.23 0.00 36.31 1.82
5602 6528 4.698304 GTCCGGAAATACCTGTCATCAAAA 59.302 41.667 5.23 0.00 36.31 2.44
5603 6529 4.258543 GTCCGGAAATACCTGTCATCAAA 58.741 43.478 5.23 0.00 36.31 2.69
5604 6530 3.677700 CGTCCGGAAATACCTGTCATCAA 60.678 47.826 5.23 0.00 36.31 2.57
5605 6531 2.159156 CGTCCGGAAATACCTGTCATCA 60.159 50.000 5.23 0.00 36.31 3.07
5606 6532 2.470821 CGTCCGGAAATACCTGTCATC 58.529 52.381 5.23 0.00 36.31 2.92
5607 6533 1.138266 CCGTCCGGAAATACCTGTCAT 59.862 52.381 5.23 0.00 37.50 3.06
5608 6534 0.533491 CCGTCCGGAAATACCTGTCA 59.467 55.000 5.23 0.00 37.50 3.58
5609 6535 0.819582 TCCGTCCGGAAATACCTGTC 59.180 55.000 5.23 0.00 42.05 3.51
5610 6536 0.822164 CTCCGTCCGGAAATACCTGT 59.178 55.000 5.23 0.00 44.66 4.00
5611 6537 0.104304 CCTCCGTCCGGAAATACCTG 59.896 60.000 5.23 0.00 44.66 4.00
5612 6538 1.047034 CCCTCCGTCCGGAAATACCT 61.047 60.000 5.23 0.00 44.66 3.08
5613 6539 1.044790 TCCCTCCGTCCGGAAATACC 61.045 60.000 5.23 0.00 44.66 2.73
5614 6540 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5615 6541 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5616 6542 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5617 6543 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
5618 6544 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
5619 6545 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
5620 6546 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
5621 6547 0.969409 AAAGGTACTCCCTCCGTCCG 60.969 60.000 0.00 0.00 45.47 4.79
5622 6548 1.273759 AAAAGGTACTCCCTCCGTCC 58.726 55.000 0.00 0.00 45.47 4.79
5677 6603 9.595823 CCGGACAACTCTCTTCTTAATTAATAA 57.404 33.333 0.00 0.00 0.00 1.40
5678 6604 8.755977 ACCGGACAACTCTCTTCTTAATTAATA 58.244 33.333 9.46 0.00 0.00 0.98
5719 6645 1.030488 TTGTGACGGTTTTCGCCCAA 61.030 50.000 0.00 0.00 43.89 4.12
5770 6696 1.691434 GGATGGTGGGCAACTCAAAAA 59.309 47.619 0.00 0.00 0.00 1.94
5771 6697 1.337118 GGATGGTGGGCAACTCAAAA 58.663 50.000 0.00 0.00 0.00 2.44
5773 6699 1.076549 GGGATGGTGGGCAACTCAA 59.923 57.895 0.00 0.00 0.00 3.02
5774 6700 2.763215 GGGATGGTGGGCAACTCA 59.237 61.111 0.00 0.00 0.00 3.41
5775 6701 2.043953 GGGGATGGTGGGCAACTC 60.044 66.667 0.00 0.00 0.00 3.01
5776 6702 2.248374 ATGGGGATGGTGGGCAACT 61.248 57.895 0.00 0.00 0.00 3.16
5777 6703 2.059786 CATGGGGATGGTGGGCAAC 61.060 63.158 0.00 0.00 0.00 4.17
5778 6704 2.363760 CATGGGGATGGTGGGCAA 59.636 61.111 0.00 0.00 0.00 4.52
5779 6705 4.462133 GCATGGGGATGGTGGGCA 62.462 66.667 0.00 0.00 0.00 5.36
5780 6706 4.147587 AGCATGGGGATGGTGGGC 62.148 66.667 0.00 0.00 0.00 5.36
5781 6707 2.123597 CAGCATGGGGATGGTGGG 60.124 66.667 6.37 0.00 43.92 4.61
5787 6713 0.475906 GTAAGAGGCAGCATGGGGAT 59.524 55.000 0.00 0.00 35.86 3.85
5788 6714 0.913934 TGTAAGAGGCAGCATGGGGA 60.914 55.000 0.00 0.00 35.86 4.81
5791 6717 3.136763 CAGTATGTAAGAGGCAGCATGG 58.863 50.000 0.00 0.00 35.86 3.66
5792 6718 3.136763 CCAGTATGTAAGAGGCAGCATG 58.863 50.000 0.00 0.00 40.87 4.06
5793 6719 2.105477 CCCAGTATGTAAGAGGCAGCAT 59.895 50.000 0.00 0.00 0.00 3.79
5794 6720 1.486310 CCCAGTATGTAAGAGGCAGCA 59.514 52.381 0.00 0.00 0.00 4.41
5795 6721 1.811941 GCCCAGTATGTAAGAGGCAGC 60.812 57.143 0.00 0.00 40.20 5.25
5796 6722 1.486310 TGCCCAGTATGTAAGAGGCAG 59.514 52.381 0.00 0.00 45.08 4.85
5798 6724 2.158755 ACATGCCCAGTATGTAAGAGGC 60.159 50.000 0.00 0.00 37.12 4.70
5800 6726 5.065218 GTCAAACATGCCCAGTATGTAAGAG 59.935 44.000 0.00 0.00 37.86 2.85
5801 6727 4.941263 GTCAAACATGCCCAGTATGTAAGA 59.059 41.667 0.00 0.00 37.86 2.10
5803 6729 4.457603 GTGTCAAACATGCCCAGTATGTAA 59.542 41.667 0.00 0.00 37.86 2.41
5804 6730 4.006989 GTGTCAAACATGCCCAGTATGTA 58.993 43.478 0.00 0.00 37.86 2.29
5807 6733 2.083774 CGTGTCAAACATGCCCAGTAT 58.916 47.619 0.00 0.00 0.00 2.12
5808 6734 1.518325 CGTGTCAAACATGCCCAGTA 58.482 50.000 0.00 0.00 0.00 2.74
5810 6736 1.580942 CCGTGTCAAACATGCCCAG 59.419 57.895 0.00 0.00 33.88 4.45
5811 6737 1.900981 CCCGTGTCAAACATGCCCA 60.901 57.895 0.00 0.00 33.88 5.36
5812 6738 2.635443 CCCCGTGTCAAACATGCCC 61.635 63.158 0.00 0.00 33.88 5.36
5813 6739 2.635443 CCCCCGTGTCAAACATGCC 61.635 63.158 0.00 0.00 33.88 4.40
5814 6740 1.460273 AACCCCCGTGTCAAACATGC 61.460 55.000 0.00 0.00 33.88 4.06
5815 6741 0.596082 GAACCCCCGTGTCAAACATG 59.404 55.000 0.00 0.00 34.96 3.21
5816 6742 0.476771 AGAACCCCCGTGTCAAACAT 59.523 50.000 0.00 0.00 0.00 2.71
5819 6745 1.149627 CCAGAACCCCCGTGTCAAA 59.850 57.895 0.00 0.00 0.00 2.69
5820 6746 1.764571 CTCCAGAACCCCCGTGTCAA 61.765 60.000 0.00 0.00 0.00 3.18
5821 6747 2.122769 TCCAGAACCCCCGTGTCA 60.123 61.111 0.00 0.00 0.00 3.58
5822 6748 1.265454 ATCTCCAGAACCCCCGTGTC 61.265 60.000 0.00 0.00 0.00 3.67
5823 6749 1.229529 ATCTCCAGAACCCCCGTGT 60.230 57.895 0.00 0.00 0.00 4.49
5837 6763 4.042187 ACCCCAATTGCTACCTATGATCTC 59.958 45.833 0.00 0.00 0.00 2.75
5865 6791 0.548510 AATGAAGCCAGCCTAGACCC 59.451 55.000 0.00 0.00 0.00 4.46
5866 6792 2.019984 CAAATGAAGCCAGCCTAGACC 58.980 52.381 0.00 0.00 0.00 3.85
5867 6793 1.403323 GCAAATGAAGCCAGCCTAGAC 59.597 52.381 0.00 0.00 0.00 2.59
5868 6794 1.755179 GCAAATGAAGCCAGCCTAGA 58.245 50.000 0.00 0.00 0.00 2.43
5869 6795 0.379669 CGCAAATGAAGCCAGCCTAG 59.620 55.000 0.00 0.00 0.00 3.02
5870 6796 1.656818 GCGCAAATGAAGCCAGCCTA 61.657 55.000 0.30 0.00 0.00 3.93
5871 6797 2.998279 GCGCAAATGAAGCCAGCCT 61.998 57.895 0.30 0.00 0.00 4.58
5901 6827 2.193447 ACGCAAGCACTCATATACACG 58.807 47.619 0.00 0.00 45.62 4.49
5903 6829 3.119137 ACAGACGCAAGCACTCATATACA 60.119 43.478 0.00 0.00 45.62 2.29
5904 6830 3.448686 ACAGACGCAAGCACTCATATAC 58.551 45.455 0.00 0.00 45.62 1.47
5905 6831 3.801114 ACAGACGCAAGCACTCATATA 57.199 42.857 0.00 0.00 45.62 0.86
5907 6833 2.492088 AGTACAGACGCAAGCACTCATA 59.508 45.455 0.00 0.00 45.62 2.15
5908 6834 1.273606 AGTACAGACGCAAGCACTCAT 59.726 47.619 0.00 0.00 45.62 2.90
5909 6835 0.673985 AGTACAGACGCAAGCACTCA 59.326 50.000 0.00 0.00 45.62 3.41
5910 6836 1.063806 CAGTACAGACGCAAGCACTC 58.936 55.000 0.00 0.00 45.62 3.51
5912 6838 0.508641 CACAGTACAGACGCAAGCAC 59.491 55.000 0.00 0.00 45.62 4.40
5913 6839 0.104120 ACACAGTACAGACGCAAGCA 59.896 50.000 0.00 0.00 45.62 3.91
5914 6840 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
5916 6842 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
5953 6879 5.300792 TGGAAAAGCTTTCAAAGTATTCGGT 59.699 36.000 13.10 0.00 0.00 4.69
5959 6885 5.690865 TCTCCTGGAAAAGCTTTCAAAGTA 58.309 37.500 13.10 0.00 0.00 2.24
5966 6892 2.630098 GCCTTTCTCCTGGAAAAGCTTT 59.370 45.455 5.69 5.69 43.93 3.51
5993 6919 3.056328 GGTGAGGAGGGCAAACGC 61.056 66.667 0.00 0.00 0.00 4.84
5994 6920 1.376037 GAGGTGAGGAGGGCAAACG 60.376 63.158 0.00 0.00 0.00 3.60
6039 6970 1.582610 GCCGTTGGGAGCAATTCGAA 61.583 55.000 0.00 0.00 34.06 3.71
6062 6993 2.208326 ACAAGTTTTTGCAAGCCTCG 57.792 45.000 0.00 0.00 37.85 4.63
6077 7008 4.002906 TCCAGTAGCAGTACCAAACAAG 57.997 45.455 0.00 0.00 0.00 3.16
6090 7096 3.526534 GACTCCAGTCAAATCCAGTAGC 58.473 50.000 1.61 0.00 44.18 3.58
6132 7138 8.991243 TTTTGAGAAAGATGGAATGCTTAATG 57.009 30.769 0.00 0.00 0.00 1.90
6161 7167 7.095940 ACGTTGACCGCATGTATGTATAATAAC 60.096 37.037 0.00 0.00 41.42 1.89
6196 7209 9.810231 GACGTTATTCCGTAAATAAAGAAAACA 57.190 29.630 15.33 0.00 40.61 2.83
6288 7301 6.842280 TGGGAGTAGTATGCAAGGAAATACTA 59.158 38.462 0.00 0.00 39.65 1.82
6289 7302 5.665812 TGGGAGTAGTATGCAAGGAAATACT 59.334 40.000 0.00 0.00 41.39 2.12
6292 7305 4.475016 AGTGGGAGTAGTATGCAAGGAAAT 59.525 41.667 0.00 0.00 0.00 2.17
6296 7309 2.501723 ACAGTGGGAGTAGTATGCAAGG 59.498 50.000 0.00 0.00 0.00 3.61
6310 7323 5.181245 ACGACAAGAATTATGAAACAGTGGG 59.819 40.000 0.00 0.00 0.00 4.61
6313 7326 5.334879 GCCACGACAAGAATTATGAAACAGT 60.335 40.000 0.00 0.00 0.00 3.55
6460 7479 8.844441 TTTAAGTTGTGTTTGATTCTTTACGG 57.156 30.769 0.00 0.00 0.00 4.02
6494 7515 6.270815 TCTCAAAATTCGACTAGTATTCCCG 58.729 40.000 0.00 0.00 0.00 5.14
6503 7524 6.294361 TCCCATCTTCTCAAAATTCGACTA 57.706 37.500 0.00 0.00 0.00 2.59
6508 7529 7.340487 ACCAGTATTCCCATCTTCTCAAAATTC 59.660 37.037 0.00 0.00 0.00 2.17
6532 7553 4.820897 CAATTTTCTTAAAGGGCTGGACC 58.179 43.478 0.00 0.00 37.93 4.46
6595 7616 9.674068 TGTTGTGCCAAATATGTAAGTAATAGA 57.326 29.630 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.