Multiple sequence alignment - TraesCS1B01G429600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G429600 chr1B 100.000 2541 0 0 1 2541 654239367 654241907 0.000000e+00 4693
1 TraesCS1B01G429600 chr1B 75.187 1201 247 36 939 2112 653938891 653937715 1.290000e-143 520
2 TraesCS1B01G429600 chr1B 78.931 655 119 17 948 1594 653975556 653974913 8.070000e-116 427
3 TraesCS1B01G429600 chr1B 100.000 159 0 0 2991 3149 654242357 654242515 8.540000e-76 294
4 TraesCS1B01G429600 chr1B 76.460 548 117 10 955 1498 653890606 653890067 1.430000e-73 287
5 TraesCS1B01G429600 chr1B 75.616 365 82 6 1035 1394 57782736 57783098 1.160000e-39 174
6 TraesCS1B01G429600 chr1B 74.795 365 85 6 1035 1394 58753011 58753373 1.170000e-34 158
7 TraesCS1B01G429600 chr1D 96.129 2196 48 5 1 2185 470809490 470811659 0.000000e+00 3550
8 TraesCS1B01G429600 chr1D 79.884 1382 249 17 948 2306 470798118 470799493 0.000000e+00 985
9 TraesCS1B01G429600 chr1D 75.437 1201 243 40 944 2121 470648512 470647341 1.290000e-148 536
10 TraesCS1B01G429600 chr1D 74.679 1248 248 51 948 2164 470657116 470655906 2.820000e-135 492
11 TraesCS1B01G429600 chr1D 87.222 360 34 8 2187 2538 470811698 470812053 1.760000e-107 399
12 TraesCS1B01G429600 chr1D 72.236 1203 243 59 947 2121 470625823 470624684 1.430000e-73 287
13 TraesCS1B01G429600 chr1D 74.105 475 103 17 1035 1500 38250403 38250866 8.970000e-41 178
14 TraesCS1B01G429600 chr1D 73.739 476 108 15 1032 1500 38294160 38294625 1.500000e-38 171
15 TraesCS1B01G429600 chr1D 75.209 359 81 7 1041 1394 39651489 39651844 2.510000e-36 163
16 TraesCS1B01G429600 chr1D 91.837 98 8 0 3049 3146 470812106 470812203 1.520000e-28 137
17 TraesCS1B01G429600 chr1A 78.913 1380 260 20 948 2306 564576006 564577375 0.000000e+00 907
18 TraesCS1B01G429600 chr1A 75.626 1198 241 37 948 2121 564345852 564344682 5.940000e-152 547
19 TraesCS1B01G429600 chr1A 75.120 1250 237 54 948 2164 564373463 564372255 4.660000e-143 518
20 TraesCS1B01G429600 chr1A 74.711 1210 244 41 989 2167 564573421 564574599 1.700000e-132 483
21 TraesCS1B01G429600 chr1A 73.801 1126 225 50 1032 2121 564313771 564312680 6.370000e-102 381
22 TraesCS1B01G429600 chr1A 86.076 316 32 5 2152 2455 564579926 564580241 2.340000e-86 329
23 TraesCS1B01G429600 chr1A 74.932 367 81 10 1035 1394 37466703 37467065 1.170000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G429600 chr1B 654239367 654242515 3148 False 2493.5 4693 100.000000 1 3149 2 chr1B.!!$F3 3148
1 TraesCS1B01G429600 chr1B 653937715 653938891 1176 True 520.0 520 75.187000 939 2112 1 chr1B.!!$R2 1173
2 TraesCS1B01G429600 chr1B 653974913 653975556 643 True 427.0 427 78.931000 948 1594 1 chr1B.!!$R3 646
3 TraesCS1B01G429600 chr1B 653890067 653890606 539 True 287.0 287 76.460000 955 1498 1 chr1B.!!$R1 543
4 TraesCS1B01G429600 chr1D 470809490 470812203 2713 False 1362.0 3550 91.729333 1 3146 3 chr1D.!!$F5 3145
5 TraesCS1B01G429600 chr1D 470798118 470799493 1375 False 985.0 985 79.884000 948 2306 1 chr1D.!!$F4 1358
6 TraesCS1B01G429600 chr1D 470647341 470648512 1171 True 536.0 536 75.437000 944 2121 1 chr1D.!!$R2 1177
7 TraesCS1B01G429600 chr1D 470655906 470657116 1210 True 492.0 492 74.679000 948 2164 1 chr1D.!!$R3 1216
8 TraesCS1B01G429600 chr1D 470624684 470625823 1139 True 287.0 287 72.236000 947 2121 1 chr1D.!!$R1 1174
9 TraesCS1B01G429600 chr1A 564573421 564580241 6820 False 573.0 907 79.900000 948 2455 3 chr1A.!!$F2 1507
10 TraesCS1B01G429600 chr1A 564344682 564345852 1170 True 547.0 547 75.626000 948 2121 1 chr1A.!!$R2 1173
11 TraesCS1B01G429600 chr1A 564372255 564373463 1208 True 518.0 518 75.120000 948 2164 1 chr1A.!!$R3 1216
12 TraesCS1B01G429600 chr1A 564312680 564313771 1091 True 381.0 381 73.801000 1032 2121 1 chr1A.!!$R1 1089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 597 0.251916 TCCCCGTTTCGCATTCATCT 59.748 50.0 0.00 0.0 0.00 2.90 F
1477 4109 0.392706 CGATCCATCATGGTCGGGAA 59.607 55.0 16.57 0.0 39.03 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 4213 0.107268 TCCCACTCCATGCATCATCG 59.893 55.0 0.00 0.0 0.00 3.84 R
3037 8471 0.110486 TGCAGGGAACTTCCACCTTC 59.890 55.0 10.11 0.0 40.21 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 6.480285 CAAAGAGGACAAAAATTTGCACTTG 58.520 36.000 5.82 0.00 41.79 3.16
147 148 4.432980 ACTTGGTTAGCATACCCATACC 57.567 45.455 4.97 0.00 37.39 2.73
148 149 3.783642 ACTTGGTTAGCATACCCATACCA 59.216 43.478 4.97 0.00 37.39 3.25
149 150 4.415512 ACTTGGTTAGCATACCCATACCAT 59.584 41.667 4.97 0.00 37.39 3.55
150 151 5.609284 ACTTGGTTAGCATACCCATACCATA 59.391 40.000 4.97 0.00 37.39 2.74
151 152 5.492855 TGGTTAGCATACCCATACCATAC 57.507 43.478 4.97 0.00 37.39 2.39
233 234 7.330262 GCCTGAATTTCCCATGATCTTTAAAA 58.670 34.615 0.00 0.00 0.00 1.52
396 397 7.547722 GTGGTAATGTTATACTGATGTGTGTCA 59.452 37.037 0.00 0.00 0.00 3.58
397 398 8.264347 TGGTAATGTTATACTGATGTGTGTCAT 58.736 33.333 0.00 0.00 39.77 3.06
398 399 8.551205 GGTAATGTTATACTGATGTGTGTCATG 58.449 37.037 0.00 0.00 36.83 3.07
399 400 9.098355 GTAATGTTATACTGATGTGTGTCATGT 57.902 33.333 0.00 0.00 36.83 3.21
401 402 8.648557 ATGTTATACTGATGTGTGTCATGTAC 57.351 34.615 0.00 0.00 36.83 2.90
402 403 7.836842 TGTTATACTGATGTGTGTCATGTACT 58.163 34.615 0.00 0.00 36.83 2.73
403 404 7.973944 TGTTATACTGATGTGTGTCATGTACTC 59.026 37.037 0.00 0.00 36.83 2.59
404 405 4.871933 ACTGATGTGTGTCATGTACTCA 57.128 40.909 9.01 9.01 36.83 3.41
405 406 5.411831 ACTGATGTGTGTCATGTACTCAT 57.588 39.130 15.21 15.21 36.83 2.90
406 407 6.530019 ACTGATGTGTGTCATGTACTCATA 57.470 37.500 15.24 8.71 36.83 2.15
407 408 7.117285 ACTGATGTGTGTCATGTACTCATAT 57.883 36.000 15.24 11.77 36.49 1.78
408 409 7.205992 ACTGATGTGTGTCATGTACTCATATC 58.794 38.462 18.67 18.67 44.22 1.63
410 411 7.205297 TGATGTGTGTCATGTACTCATATCAG 58.795 38.462 21.34 0.00 46.37 2.90
411 412 6.530019 TGTGTGTCATGTACTCATATCAGT 57.470 37.500 0.00 0.00 34.33 3.41
412 413 6.564328 TGTGTGTCATGTACTCATATCAGTC 58.436 40.000 0.00 0.00 34.33 3.51
413 414 5.683302 GTGTGTCATGTACTCATATCAGTCG 59.317 44.000 0.00 0.00 34.33 4.18
414 415 5.215903 GTGTCATGTACTCATATCAGTCGG 58.784 45.833 0.00 0.00 32.47 4.79
415 416 4.887655 TGTCATGTACTCATATCAGTCGGT 59.112 41.667 0.00 0.00 32.47 4.69
416 417 6.017357 GTGTCATGTACTCATATCAGTCGGTA 60.017 42.308 0.00 0.00 32.47 4.02
457 458 3.814625 TGTTGCACAAGTGGATGAACTA 58.185 40.909 2.00 0.00 0.00 2.24
582 583 0.822164 ATACTTTCAGTCCGTCCCCG 59.178 55.000 0.00 0.00 0.00 5.73
593 594 2.030401 CGTCCCCGTTTCGCATTCA 61.030 57.895 0.00 0.00 0.00 2.57
596 597 0.251916 TCCCCGTTTCGCATTCATCT 59.748 50.000 0.00 0.00 0.00 2.90
635 636 9.326413 GGCACTATTTATATTTGTGTCAGTACT 57.674 33.333 0.00 0.00 33.95 2.73
678 679 7.823745 TCTTCTTTGGATAAATGATTAGCCC 57.176 36.000 0.87 0.00 45.17 5.19
814 815 3.456277 AGATTGTTAGGACCTCATGGGAC 59.544 47.826 0.00 0.00 38.76 4.46
1045 1048 9.671279 ACATTGTTGATTGTCTAACTGATGATA 57.329 29.630 0.00 0.00 31.63 2.15
1139 1142 1.290431 TGCCTTCTCCTCTGATCCTCT 59.710 52.381 0.00 0.00 0.00 3.69
1206 1215 3.039011 ACCTCAATACGGGTCTGCTATT 58.961 45.455 0.00 0.00 0.00 1.73
1398 4029 2.336478 ACGAGAGTGGAGGACGCTG 61.336 63.158 0.00 0.00 46.97 5.18
1477 4109 0.392706 CGATCCATCATGGTCGGGAA 59.607 55.000 16.57 0.00 39.03 3.97
1566 4201 2.492484 GGTGTTCTCGTCTGACCTATGT 59.508 50.000 1.55 0.00 0.00 2.29
1578 4213 2.028112 TGACCTATGTGAGTGGCTTGTC 60.028 50.000 0.00 0.00 0.00 3.18
1758 4411 2.622942 TGACTGTTGGAATGGTTGCTTC 59.377 45.455 0.00 0.00 0.00 3.86
2181 4887 7.379797 GTCTTTGTGCATCTTCTTTTTCCTAAC 59.620 37.037 0.00 0.00 0.00 2.34
2213 4919 0.613012 GCATGCCCCTGTTTCTCCTT 60.613 55.000 6.36 0.00 0.00 3.36
2217 4923 1.777878 TGCCCCTGTTTCTCCTTTGTA 59.222 47.619 0.00 0.00 0.00 2.41
2218 4924 2.160205 GCCCCTGTTTCTCCTTTGTAC 58.840 52.381 0.00 0.00 0.00 2.90
2220 4926 1.804748 CCCTGTTTCTCCTTTGTACGC 59.195 52.381 0.00 0.00 0.00 4.42
2221 4927 2.489971 CCTGTTTCTCCTTTGTACGCA 58.510 47.619 0.00 0.00 0.00 5.24
2222 4928 2.223377 CCTGTTTCTCCTTTGTACGCAC 59.777 50.000 0.00 0.00 0.00 5.34
2245 4958 7.913297 GCACGAAAACTGGCTAATGATATTTAA 59.087 33.333 0.00 0.00 0.00 1.52
2277 4991 4.268405 CCTATTTCCAATTTTGCGCATGTC 59.732 41.667 12.75 0.00 0.00 3.06
2281 4995 2.295629 TCCAATTTTGCGCATGTCTGAA 59.704 40.909 12.75 0.00 0.00 3.02
2294 5008 4.448732 GCATGTCTGAATTTGTTTTCCACC 59.551 41.667 0.00 0.00 0.00 4.61
2297 5011 4.158764 TGTCTGAATTTGTTTTCCACCGTT 59.841 37.500 0.00 0.00 0.00 4.44
2315 7742 3.879295 CCGTTCAGAATTAGCACCATCAT 59.121 43.478 0.00 0.00 0.00 2.45
2341 7768 7.911130 TGGAAATATAATTGGAAGAATGGCA 57.089 32.000 0.00 0.00 0.00 4.92
2371 7802 7.113437 AGTCATCACAGTATATATAGCGGTCT 58.887 38.462 0.00 0.00 0.00 3.85
2376 7807 6.882678 TCACAGTATATATAGCGGTCTAAGCA 59.117 38.462 0.00 0.00 37.01 3.91
2436 7870 4.388469 CCGTTTGCAAATGGGATTAACTTG 59.612 41.667 33.96 11.40 40.61 3.16
2463 7897 3.993081 CGAACTCTCTCATCAAGCAAACT 59.007 43.478 0.00 0.00 0.00 2.66
2475 7909 2.336088 CAAACTGGCTGCGGTTGG 59.664 61.111 9.64 4.29 0.00 3.77
2486 7920 2.032924 GCTGCGGTTGGTATGGTTAATC 59.967 50.000 0.00 0.00 0.00 1.75
2504 7938 7.448161 TGGTTAATCACATCTCATGTTCTTGTT 59.552 33.333 0.00 0.00 42.70 2.83
2510 7944 6.992123 TCACATCTCATGTTCTTGTTAGTGTT 59.008 34.615 0.00 0.00 42.70 3.32
2511 7945 7.171508 TCACATCTCATGTTCTTGTTAGTGTTC 59.828 37.037 0.00 0.00 42.70 3.18
2522 7956 9.530633 GTTCTTGTTAGTGTTCTTTAAGAGAGA 57.469 33.333 0.00 0.00 35.37 3.10
2534 7968 7.733773 TCTTTAAGAGAGAGAGAGAGAGAGA 57.266 40.000 0.00 0.00 0.00 3.10
2536 7970 6.485830 TTAAGAGAGAGAGAGAGAGAGAGG 57.514 45.833 0.00 0.00 0.00 3.69
2537 7971 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
2538 7972 2.370189 GAGAGAGAGAGAGAGAGAGGGG 59.630 59.091 0.00 0.00 0.00 4.79
2539 7973 1.421646 GAGAGAGAGAGAGAGAGGGGG 59.578 61.905 0.00 0.00 0.00 5.40
3034 8468 3.742433 ACTTCTCTGAGTGGAACAGTG 57.258 47.619 4.32 0.00 45.14 3.66
3036 8470 3.181471 ACTTCTCTGAGTGGAACAGTGTG 60.181 47.826 4.32 0.00 45.14 3.82
3037 8471 1.688735 TCTCTGAGTGGAACAGTGTGG 59.311 52.381 4.32 0.00 45.14 4.17
3039 8473 2.103094 CTCTGAGTGGAACAGTGTGGAA 59.897 50.000 0.00 0.00 45.14 3.53
3040 8474 2.103094 TCTGAGTGGAACAGTGTGGAAG 59.897 50.000 0.00 0.00 45.14 3.46
3041 8475 1.140852 TGAGTGGAACAGTGTGGAAGG 59.859 52.381 0.00 0.00 45.14 3.46
3042 8476 1.141053 GAGTGGAACAGTGTGGAAGGT 59.859 52.381 0.00 0.00 45.14 3.50
3043 8477 1.134098 AGTGGAACAGTGTGGAAGGTG 60.134 52.381 0.00 0.00 42.47 4.00
3044 8478 0.182537 TGGAACAGTGTGGAAGGTGG 59.817 55.000 0.00 0.00 0.00 4.61
3045 8479 0.472471 GGAACAGTGTGGAAGGTGGA 59.528 55.000 0.00 0.00 0.00 4.02
3046 8480 1.133915 GGAACAGTGTGGAAGGTGGAA 60.134 52.381 0.00 0.00 0.00 3.53
3048 8482 1.213296 ACAGTGTGGAAGGTGGAAGT 58.787 50.000 0.00 0.00 0.00 3.01
3049 8483 1.564348 ACAGTGTGGAAGGTGGAAGTT 59.436 47.619 0.00 0.00 0.00 2.66
3050 8484 2.222027 CAGTGTGGAAGGTGGAAGTTC 58.778 52.381 0.00 0.00 0.00 3.01
3051 8485 1.143073 AGTGTGGAAGGTGGAAGTTCC 59.857 52.381 15.50 15.50 42.39 3.62
3052 8486 0.476771 TGTGGAAGGTGGAAGTTCCC 59.523 55.000 19.42 10.28 41.51 3.97
3053 8487 0.771755 GTGGAAGGTGGAAGTTCCCT 59.228 55.000 19.42 7.15 41.51 4.20
3054 8488 0.771127 TGGAAGGTGGAAGTTCCCTG 59.229 55.000 19.42 0.00 41.51 4.45
3055 8489 0.609406 GGAAGGTGGAAGTTCCCTGC 60.609 60.000 19.42 8.41 36.92 4.85
3056 8490 0.110486 GAAGGTGGAAGTTCCCTGCA 59.890 55.000 19.42 0.00 35.03 4.41
3057 8491 0.111253 AAGGTGGAAGTTCCCTGCAG 59.889 55.000 19.42 6.78 35.03 4.41
3058 8492 1.973812 GGTGGAAGTTCCCTGCAGC 60.974 63.158 19.42 6.44 35.03 5.25
3059 8493 2.032528 TGGAAGTTCCCTGCAGCG 59.967 61.111 19.42 0.00 35.03 5.18
3060 8494 2.747855 GGAAGTTCCCTGCAGCGG 60.748 66.667 11.17 11.58 0.00 5.52
3061 8495 3.435186 GAAGTTCCCTGCAGCGGC 61.435 66.667 8.66 0.31 41.68 6.53
3135 8569 4.439305 TTAGACAACATTTCTGGCATGC 57.561 40.909 9.90 9.90 0.00 4.06
3146 8580 3.146218 TGGCATGCCCAGAAGTTTT 57.854 47.368 33.44 0.00 39.18 2.43
3147 8581 0.680618 TGGCATGCCCAGAAGTTTTG 59.319 50.000 33.44 0.00 39.18 2.44
3148 8582 0.681175 GGCATGCCCAGAAGTTTTGT 59.319 50.000 27.24 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.181506 GCTTGTGCTATTTGGCAGAGTAC 60.182 47.826 7.20 7.20 43.25 2.73
111 112 1.474077 CCAAGTAACCATTCAGGCAGC 59.526 52.381 0.00 0.00 43.14 5.25
147 148 7.713764 TTGATTTACTGGTGATCGATGTATG 57.286 36.000 0.54 0.00 0.00 2.39
148 149 8.731275 TTTTGATTTACTGGTGATCGATGTAT 57.269 30.769 0.54 0.00 0.00 2.29
149 150 8.554835 TTTTTGATTTACTGGTGATCGATGTA 57.445 30.769 0.54 0.00 0.00 2.29
150 151 7.390440 TCTTTTTGATTTACTGGTGATCGATGT 59.610 33.333 0.54 0.00 0.00 3.06
151 152 7.693951 GTCTTTTTGATTTACTGGTGATCGATG 59.306 37.037 0.54 0.00 0.00 3.84
233 234 9.471702 CATGGAATATAGGAGGCAAATCTATTT 57.528 33.333 0.00 0.00 0.00 1.40
254 255 6.433716 CCATAATGGTGTGCATATTACATGGA 59.566 38.462 0.00 0.00 31.35 3.41
329 330 4.499037 AATAAAAAGTCCACGTCTTGCC 57.501 40.909 0.00 0.00 0.00 4.52
396 397 5.382616 TGGTACCGACTGATATGAGTACAT 58.617 41.667 7.57 0.00 40.16 2.29
397 398 4.784177 TGGTACCGACTGATATGAGTACA 58.216 43.478 7.57 0.00 33.41 2.90
398 399 5.961396 ATGGTACCGACTGATATGAGTAC 57.039 43.478 7.57 0.00 0.00 2.73
399 400 6.971726 AAATGGTACCGACTGATATGAGTA 57.028 37.500 7.57 0.00 0.00 2.59
400 401 5.871396 AAATGGTACCGACTGATATGAGT 57.129 39.130 7.57 0.00 0.00 3.41
401 402 8.833231 ATTAAAATGGTACCGACTGATATGAG 57.167 34.615 7.57 0.00 0.00 2.90
402 403 9.621629 AAATTAAAATGGTACCGACTGATATGA 57.378 29.630 7.57 0.00 0.00 2.15
403 404 9.878599 GAAATTAAAATGGTACCGACTGATATG 57.121 33.333 7.57 0.00 0.00 1.78
404 405 9.847224 AGAAATTAAAATGGTACCGACTGATAT 57.153 29.630 7.57 0.00 0.00 1.63
405 406 9.675464 AAGAAATTAAAATGGTACCGACTGATA 57.325 29.630 7.57 0.00 0.00 2.15
406 407 8.575649 AAGAAATTAAAATGGTACCGACTGAT 57.424 30.769 7.57 0.00 0.00 2.90
407 408 7.989416 AAGAAATTAAAATGGTACCGACTGA 57.011 32.000 7.57 0.00 0.00 3.41
593 594 0.107897 TGCCGGTTACGAATGCAGAT 60.108 50.000 1.90 0.00 44.60 2.90
596 597 0.246910 TAGTGCCGGTTACGAATGCA 59.753 50.000 1.90 0.00 44.60 3.96
664 665 8.537728 TTTGTCAGAATGGGCTAATCATTTAT 57.462 30.769 0.00 0.00 35.26 1.40
671 672 5.163478 GCAGAATTTGTCAGAATGGGCTAAT 60.163 40.000 0.00 0.00 36.16 1.73
678 679 5.578005 ATGGAGCAGAATTTGTCAGAATG 57.422 39.130 0.00 0.00 37.54 2.67
1045 1048 4.901849 TCGAGAGAGGATTTCCACCAATAT 59.098 41.667 0.00 0.00 38.89 1.28
1139 1142 2.707849 GGCAGCTTCCGACGGTAGA 61.708 63.158 23.09 6.01 0.00 2.59
1206 1215 0.895100 GGGACATGCCAACAAGCTGA 60.895 55.000 8.20 0.00 38.95 4.26
1398 4029 6.768381 GGCCATATGGAGTATTAAGAATAGGC 59.232 42.308 26.47 3.04 37.39 3.93
1477 4109 7.509546 TCCTGAAAGTTGAAGACATAGAACTT 58.490 34.615 0.00 0.00 32.51 2.66
1566 4201 2.008543 GCATCATCGACAAGCCACTCA 61.009 52.381 0.00 0.00 0.00 3.41
1578 4213 0.107268 TCCCACTCCATGCATCATCG 59.893 55.000 0.00 0.00 0.00 3.84
2022 4689 2.372172 ACTAAGTTGCCCTGTGCTAGTT 59.628 45.455 0.00 0.00 40.64 2.24
2201 4907 2.223377 GTGCGTACAAAGGAGAAACAGG 59.777 50.000 0.00 0.00 0.00 4.00
2213 4919 0.305313 GCCAGTTTTCGTGCGTACAA 59.695 50.000 4.09 0.00 0.00 2.41
2217 4923 1.196808 CATTAGCCAGTTTTCGTGCGT 59.803 47.619 0.00 0.00 0.00 5.24
2218 4924 1.463056 TCATTAGCCAGTTTTCGTGCG 59.537 47.619 0.00 0.00 0.00 5.34
2220 4926 9.950680 ATTAAATATCATTAGCCAGTTTTCGTG 57.049 29.630 0.00 0.00 0.00 4.35
2245 4958 5.760484 AAATTGGAAATAGGTGCCACAAT 57.240 34.783 0.00 0.00 0.00 2.71
2251 4964 2.348362 GCGCAAAATTGGAAATAGGTGC 59.652 45.455 0.30 0.00 0.00 5.01
2259 4972 2.295629 TCAGACATGCGCAAAATTGGAA 59.704 40.909 17.11 0.00 0.00 3.53
2277 4991 4.677584 TGAACGGTGGAAAACAAATTCAG 58.322 39.130 0.00 0.00 0.00 3.02
2281 4995 4.993029 TTCTGAACGGTGGAAAACAAAT 57.007 36.364 0.00 0.00 0.00 2.32
2294 5008 6.347969 CCATATGATGGTGCTAATTCTGAACG 60.348 42.308 3.65 0.00 45.54 3.95
2315 7742 9.599056 TGCCATTCTTCCAATTATATTTCCATA 57.401 29.630 0.00 0.00 0.00 2.74
2350 7777 7.556635 TGCTTAGACCGCTATATATACTGTGAT 59.443 37.037 0.00 0.00 0.00 3.06
2351 7778 6.882678 TGCTTAGACCGCTATATATACTGTGA 59.117 38.462 0.00 0.00 0.00 3.58
2352 7779 6.967767 GTGCTTAGACCGCTATATATACTGTG 59.032 42.308 0.00 0.00 0.00 3.66
2353 7780 6.095160 GGTGCTTAGACCGCTATATATACTGT 59.905 42.308 0.00 0.00 0.00 3.55
2354 7781 6.095021 TGGTGCTTAGACCGCTATATATACTG 59.905 42.308 0.00 0.00 39.07 2.74
2355 7782 6.185511 TGGTGCTTAGACCGCTATATATACT 58.814 40.000 0.00 0.00 39.07 2.12
2371 7802 1.883275 CACGGATTGGTTTGGTGCTTA 59.117 47.619 0.00 0.00 0.00 3.09
2376 7807 1.684450 GGTTTCACGGATTGGTTTGGT 59.316 47.619 0.00 0.00 0.00 3.67
2436 7870 2.929531 TGATGAGAGAGTTCGTCAGC 57.070 50.000 0.00 0.00 38.00 4.26
2463 7897 2.045438 CCATACCAACCGCAGCCA 60.045 61.111 0.00 0.00 0.00 4.75
2475 7909 8.668510 AGAACATGAGATGTGATTAACCATAC 57.331 34.615 0.00 0.00 44.07 2.39
2486 7920 6.791887 ACACTAACAAGAACATGAGATGTG 57.208 37.500 0.00 0.00 44.07 3.21
2504 7938 8.598916 TCTCTCTCTCTCTCTTAAAGAACACTA 58.401 37.037 0.00 0.00 32.23 2.74
2510 7944 7.147655 CCTCTCTCTCTCTCTCTCTCTTAAAGA 60.148 44.444 0.00 0.00 0.00 2.52
2511 7945 6.989169 CCTCTCTCTCTCTCTCTCTCTTAAAG 59.011 46.154 0.00 0.00 0.00 1.85
3015 8449 3.388308 CACACTGTTCCACTCAGAGAAG 58.612 50.000 3.79 0.00 36.81 2.85
3022 8456 1.141053 ACCTTCCACACTGTTCCACTC 59.859 52.381 0.00 0.00 0.00 3.51
3023 8457 1.134098 CACCTTCCACACTGTTCCACT 60.134 52.381 0.00 0.00 0.00 4.00
3024 8458 1.308998 CACCTTCCACACTGTTCCAC 58.691 55.000 0.00 0.00 0.00 4.02
3025 8459 0.182537 CCACCTTCCACACTGTTCCA 59.817 55.000 0.00 0.00 0.00 3.53
3026 8460 0.472471 TCCACCTTCCACACTGTTCC 59.528 55.000 0.00 0.00 0.00 3.62
3028 8462 1.564348 ACTTCCACCTTCCACACTGTT 59.436 47.619 0.00 0.00 0.00 3.16
3029 8463 1.213296 ACTTCCACCTTCCACACTGT 58.787 50.000 0.00 0.00 0.00 3.55
3030 8464 2.222027 GAACTTCCACCTTCCACACTG 58.778 52.381 0.00 0.00 0.00 3.66
3032 8466 1.605753 GGAACTTCCACCTTCCACAC 58.394 55.000 2.62 0.00 36.66 3.82
3034 8468 0.771755 AGGGAACTTCCACCTTCCAC 59.228 55.000 10.11 0.00 38.64 4.02
3036 8470 0.609406 GCAGGGAACTTCCACCTTCC 60.609 60.000 10.11 0.00 40.21 3.46
3037 8471 0.110486 TGCAGGGAACTTCCACCTTC 59.890 55.000 10.11 0.00 40.21 3.46
3039 8473 1.763770 CTGCAGGGAACTTCCACCT 59.236 57.895 5.57 0.00 40.21 4.00
3040 8474 1.973812 GCTGCAGGGAACTTCCACC 60.974 63.158 17.12 0.00 40.21 4.61
3041 8475 2.328099 CGCTGCAGGGAACTTCCAC 61.328 63.158 25.55 0.00 40.21 4.02
3042 8476 2.032528 CGCTGCAGGGAACTTCCA 59.967 61.111 25.55 0.00 40.21 3.53
3043 8477 2.747855 CCGCTGCAGGGAACTTCC 60.748 66.667 30.57 2.90 40.21 3.46
3044 8478 3.435186 GCCGCTGCAGGGAACTTC 61.435 66.667 30.57 10.91 40.21 3.01
3045 8479 4.269523 TGCCGCTGCAGGGAACTT 62.270 61.111 30.57 0.00 44.23 2.66
3054 8488 3.198236 TTGCTGACTTTGCCGCTGC 62.198 57.895 0.00 0.00 38.26 5.25
3055 8489 1.081641 CTTGCTGACTTTGCCGCTG 60.082 57.895 0.00 0.00 0.00 5.18
3056 8490 1.526917 ACTTGCTGACTTTGCCGCT 60.527 52.632 0.00 0.00 0.00 5.52
3057 8491 1.370900 CACTTGCTGACTTTGCCGC 60.371 57.895 0.00 0.00 0.00 6.53
3058 8492 1.370900 GCACTTGCTGACTTTGCCG 60.371 57.895 0.00 0.00 38.21 5.69
3059 8493 1.370900 CGCACTTGCTGACTTTGCC 60.371 57.895 0.00 0.00 39.32 4.52
3060 8494 0.248621 AACGCACTTGCTGACTTTGC 60.249 50.000 0.00 0.00 39.32 3.68
3061 8495 1.469917 CAACGCACTTGCTGACTTTG 58.530 50.000 0.00 0.00 39.32 2.77
3062 8496 3.924238 CAACGCACTTGCTGACTTT 57.076 47.368 0.00 0.00 39.32 2.66
3077 8511 8.894768 ATCTATCTTACTCTTGGTATTGCAAC 57.105 34.615 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.