Multiple sequence alignment - TraesCS1B01G429400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G429400 chr1B 100.000 2435 0 0 1 2435 654033044 654030610 0.000000e+00 4497
1 TraesCS1B01G429400 chr1D 85.048 2187 194 65 326 2435 470734960 470732830 0.000000e+00 2104
2 TraesCS1B01G429400 chr1A 89.362 1598 94 37 869 2435 564397741 564396189 0.000000e+00 1940
3 TraesCS1B01G429400 chr2D 86.572 633 83 2 1804 2435 25024784 25025415 0.000000e+00 697
4 TraesCS1B01G429400 chr2A 84.628 592 71 9 1804 2394 27499919 27500491 2.720000e-159 571


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G429400 chr1B 654030610 654033044 2434 True 4497 4497 100.000 1 2435 1 chr1B.!!$R1 2434
1 TraesCS1B01G429400 chr1D 470732830 470734960 2130 True 2104 2104 85.048 326 2435 1 chr1D.!!$R1 2109
2 TraesCS1B01G429400 chr1A 564396189 564397741 1552 True 1940 1940 89.362 869 2435 1 chr1A.!!$R1 1566
3 TraesCS1B01G429400 chr2D 25024784 25025415 631 False 697 697 86.572 1804 2435 1 chr2D.!!$F1 631
4 TraesCS1B01G429400 chr2A 27499919 27500491 572 False 571 571 84.628 1804 2394 1 chr2A.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.042731 TCACCCTCCCTCACCTTAGG 59.957 60.0 0.0 0.0 36.3 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 1731 0.106569 GCATCACACCATCATCCCCA 60.107 55.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.828299 TTTTCGAAGAAACAATGTCCTGT 57.172 34.783 0.00 0.00 45.90 4.00
23 24 6.928979 TTTTCGAAGAAACAATGTCCTGTA 57.071 33.333 0.00 0.00 45.90 2.74
24 25 6.539649 TTTCGAAGAAACAATGTCCTGTAG 57.460 37.500 0.00 0.00 45.90 2.74
25 26 5.209818 TCGAAGAAACAATGTCCTGTAGT 57.790 39.130 0.00 0.00 0.00 2.73
26 27 5.607477 TCGAAGAAACAATGTCCTGTAGTT 58.393 37.500 0.00 0.00 0.00 2.24
27 28 5.465390 TCGAAGAAACAATGTCCTGTAGTTG 59.535 40.000 0.00 0.00 0.00 3.16
28 29 5.465390 CGAAGAAACAATGTCCTGTAGTTGA 59.535 40.000 0.00 0.00 0.00 3.18
29 30 6.018262 CGAAGAAACAATGTCCTGTAGTTGAA 60.018 38.462 0.00 0.00 0.00 2.69
30 31 7.307989 CGAAGAAACAATGTCCTGTAGTTGAAT 60.308 37.037 0.00 0.00 0.00 2.57
31 32 7.440523 AGAAACAATGTCCTGTAGTTGAATC 57.559 36.000 0.00 0.00 0.00 2.52
32 33 6.431234 AGAAACAATGTCCTGTAGTTGAATCC 59.569 38.462 0.00 0.00 0.00 3.01
33 34 5.241403 ACAATGTCCTGTAGTTGAATCCA 57.759 39.130 0.00 0.00 0.00 3.41
34 35 5.819991 ACAATGTCCTGTAGTTGAATCCAT 58.180 37.500 0.00 0.00 0.00 3.41
35 36 5.882557 ACAATGTCCTGTAGTTGAATCCATC 59.117 40.000 0.00 0.00 0.00 3.51
36 37 5.698741 ATGTCCTGTAGTTGAATCCATCA 57.301 39.130 0.00 0.00 35.85 3.07
37 38 4.832248 TGTCCTGTAGTTGAATCCATCAC 58.168 43.478 0.00 0.00 37.92 3.06
38 39 4.192317 GTCCTGTAGTTGAATCCATCACC 58.808 47.826 0.00 0.00 37.92 4.02
39 40 3.199946 TCCTGTAGTTGAATCCATCACCC 59.800 47.826 0.00 0.00 37.92 4.61
40 41 3.200825 CCTGTAGTTGAATCCATCACCCT 59.799 47.826 0.00 0.00 37.92 4.34
41 42 4.446371 CTGTAGTTGAATCCATCACCCTC 58.554 47.826 0.00 0.00 37.92 4.30
42 43 3.199946 TGTAGTTGAATCCATCACCCTCC 59.800 47.826 0.00 0.00 37.92 4.30
43 44 1.566231 AGTTGAATCCATCACCCTCCC 59.434 52.381 0.00 0.00 37.92 4.30
44 45 1.566231 GTTGAATCCATCACCCTCCCT 59.434 52.381 0.00 0.00 37.92 4.20
45 46 1.511613 TGAATCCATCACCCTCCCTC 58.488 55.000 0.00 0.00 31.50 4.30
46 47 1.274358 TGAATCCATCACCCTCCCTCA 60.274 52.381 0.00 0.00 31.50 3.86
47 48 1.141858 GAATCCATCACCCTCCCTCAC 59.858 57.143 0.00 0.00 0.00 3.51
48 49 0.695803 ATCCATCACCCTCCCTCACC 60.696 60.000 0.00 0.00 0.00 4.02
49 50 1.307343 CCATCACCCTCCCTCACCT 60.307 63.158 0.00 0.00 0.00 4.00
50 51 0.916358 CCATCACCCTCCCTCACCTT 60.916 60.000 0.00 0.00 0.00 3.50
51 52 1.625228 CCATCACCCTCCCTCACCTTA 60.625 57.143 0.00 0.00 0.00 2.69
52 53 1.765314 CATCACCCTCCCTCACCTTAG 59.235 57.143 0.00 0.00 0.00 2.18
53 54 0.042731 TCACCCTCCCTCACCTTAGG 59.957 60.000 0.00 0.00 36.30 2.69
54 55 1.307084 ACCCTCCCTCACCTTAGGC 60.307 63.158 0.00 0.00 35.09 3.93
55 56 2.435693 CCCTCCCTCACCTTAGGCG 61.436 68.421 0.00 0.00 35.09 5.52
56 57 1.381327 CCTCCCTCACCTTAGGCGA 60.381 63.158 0.00 0.00 35.09 5.54
57 58 0.760945 CCTCCCTCACCTTAGGCGAT 60.761 60.000 0.00 0.00 35.09 4.58
58 59 0.676736 CTCCCTCACCTTAGGCGATC 59.323 60.000 0.00 0.00 35.09 3.69
59 60 1.107538 TCCCTCACCTTAGGCGATCG 61.108 60.000 11.69 11.69 35.09 3.69
60 61 1.107538 CCCTCACCTTAGGCGATCGA 61.108 60.000 21.57 0.00 35.09 3.59
61 62 0.962489 CCTCACCTTAGGCGATCGAT 59.038 55.000 21.57 9.02 0.00 3.59
62 63 1.341531 CCTCACCTTAGGCGATCGATT 59.658 52.381 21.57 8.22 0.00 3.34
63 64 2.224066 CCTCACCTTAGGCGATCGATTT 60.224 50.000 21.57 5.46 0.00 2.17
64 65 3.053455 CTCACCTTAGGCGATCGATTTC 58.947 50.000 21.57 4.69 0.00 2.17
65 66 1.787155 CACCTTAGGCGATCGATTTCG 59.213 52.381 21.57 0.84 41.99 3.46
66 67 1.269621 ACCTTAGGCGATCGATTTCGG 60.270 52.381 21.57 14.71 39.49 4.30
67 68 1.269621 CCTTAGGCGATCGATTTCGGT 60.270 52.381 21.57 0.00 39.49 4.69
68 69 1.787155 CTTAGGCGATCGATTTCGGTG 59.213 52.381 21.57 0.00 39.49 4.94
69 70 0.596600 TAGGCGATCGATTTCGGTGC 60.597 55.000 21.57 0.00 39.49 5.01
70 71 1.883084 GGCGATCGATTTCGGTGCT 60.883 57.895 21.57 0.00 39.49 4.40
71 72 1.429148 GGCGATCGATTTCGGTGCTT 61.429 55.000 21.57 0.00 39.49 3.91
72 73 1.205657 GCGATCGATTTCGGTGCTTA 58.794 50.000 21.57 0.00 39.49 3.09
73 74 1.071436 GCGATCGATTTCGGTGCTTAC 60.071 52.381 21.57 0.00 39.49 2.34
74 75 2.190161 CGATCGATTTCGGTGCTTACA 58.810 47.619 10.26 0.00 40.29 2.41
75 76 2.216488 CGATCGATTTCGGTGCTTACAG 59.784 50.000 10.26 0.00 40.29 2.74
76 77 2.004583 TCGATTTCGGTGCTTACAGG 57.995 50.000 0.00 0.00 40.29 4.00
77 78 0.373716 CGATTTCGGTGCTTACAGGC 59.626 55.000 0.00 0.00 35.37 4.85
78 79 0.733150 GATTTCGGTGCTTACAGGCC 59.267 55.000 0.00 0.00 0.00 5.19
79 80 1.024579 ATTTCGGTGCTTACAGGCCG 61.025 55.000 0.00 0.00 44.95 6.13
80 81 3.599285 TTCGGTGCTTACAGGCCGG 62.599 63.158 0.00 0.00 43.87 6.13
82 83 4.796495 GGTGCTTACAGGCCGGGG 62.796 72.222 8.08 0.00 0.00 5.73
83 84 4.029809 GTGCTTACAGGCCGGGGT 62.030 66.667 8.08 5.37 0.00 4.95
84 85 4.028490 TGCTTACAGGCCGGGGTG 62.028 66.667 8.08 0.00 0.00 4.61
85 86 3.712907 GCTTACAGGCCGGGGTGA 61.713 66.667 8.08 0.00 0.00 4.02
86 87 2.267961 CTTACAGGCCGGGGTGAC 59.732 66.667 8.08 0.00 0.00 3.67
87 88 2.203877 TTACAGGCCGGGGTGACT 60.204 61.111 8.08 0.00 0.00 3.41
88 89 0.974010 CTTACAGGCCGGGGTGACTA 60.974 60.000 8.08 0.00 0.00 2.59
89 90 0.325860 TTACAGGCCGGGGTGACTAT 60.326 55.000 8.08 0.00 0.00 2.12
90 91 1.046472 TACAGGCCGGGGTGACTATG 61.046 60.000 8.08 0.00 0.00 2.23
91 92 2.768344 AGGCCGGGGTGACTATGG 60.768 66.667 2.18 0.00 0.00 2.74
92 93 2.766651 GGCCGGGGTGACTATGGA 60.767 66.667 2.18 0.00 0.00 3.41
93 94 2.147387 GGCCGGGGTGACTATGGAT 61.147 63.158 2.18 0.00 0.00 3.41
94 95 1.371558 GCCGGGGTGACTATGGATC 59.628 63.158 2.18 0.00 0.00 3.36
95 96 1.122019 GCCGGGGTGACTATGGATCT 61.122 60.000 2.18 0.00 0.00 2.75
96 97 1.424638 CCGGGGTGACTATGGATCTT 58.575 55.000 0.00 0.00 0.00 2.40
97 98 1.768870 CCGGGGTGACTATGGATCTTT 59.231 52.381 0.00 0.00 0.00 2.52
98 99 2.485479 CCGGGGTGACTATGGATCTTTG 60.485 54.545 0.00 0.00 0.00 2.77
99 100 2.170607 CGGGGTGACTATGGATCTTTGT 59.829 50.000 0.00 0.00 0.00 2.83
100 101 3.545703 GGGGTGACTATGGATCTTTGTG 58.454 50.000 0.00 0.00 0.00 3.33
101 102 2.945668 GGGTGACTATGGATCTTTGTGC 59.054 50.000 0.00 0.00 0.00 4.57
102 103 2.945668 GGTGACTATGGATCTTTGTGCC 59.054 50.000 0.00 0.00 0.00 5.01
103 104 3.370953 GGTGACTATGGATCTTTGTGCCT 60.371 47.826 0.00 0.00 0.00 4.75
104 105 3.624861 GTGACTATGGATCTTTGTGCCTG 59.375 47.826 0.00 0.00 0.00 4.85
105 106 3.264193 TGACTATGGATCTTTGTGCCTGT 59.736 43.478 0.00 0.00 0.00 4.00
106 107 3.614092 ACTATGGATCTTTGTGCCTGTG 58.386 45.455 0.00 0.00 0.00 3.66
107 108 2.885135 ATGGATCTTTGTGCCTGTGA 57.115 45.000 0.00 0.00 0.00 3.58
108 109 2.189594 TGGATCTTTGTGCCTGTGAG 57.810 50.000 0.00 0.00 0.00 3.51
109 110 1.271543 TGGATCTTTGTGCCTGTGAGG 60.272 52.381 0.00 0.00 38.80 3.86
110 111 1.003580 GGATCTTTGTGCCTGTGAGGA 59.996 52.381 0.00 0.00 37.67 3.71
111 112 2.354259 GATCTTTGTGCCTGTGAGGAG 58.646 52.381 0.00 0.00 37.67 3.69
112 113 1.423584 TCTTTGTGCCTGTGAGGAGA 58.576 50.000 0.00 0.00 37.67 3.71
113 114 1.980765 TCTTTGTGCCTGTGAGGAGAT 59.019 47.619 0.00 0.00 37.67 2.75
114 115 2.027745 TCTTTGTGCCTGTGAGGAGATC 60.028 50.000 0.00 0.00 37.67 2.75
115 116 1.649321 TTGTGCCTGTGAGGAGATCT 58.351 50.000 0.00 0.00 37.67 2.75
116 117 0.900421 TGTGCCTGTGAGGAGATCTG 59.100 55.000 0.00 0.00 37.67 2.90
117 118 0.177604 GTGCCTGTGAGGAGATCTGG 59.822 60.000 0.00 0.00 37.67 3.86
118 119 0.252421 TGCCTGTGAGGAGATCTGGT 60.252 55.000 0.00 0.00 37.67 4.00
119 120 0.463620 GCCTGTGAGGAGATCTGGTC 59.536 60.000 0.00 0.00 37.67 4.02
120 121 1.964344 GCCTGTGAGGAGATCTGGTCT 60.964 57.143 0.00 0.00 37.67 3.85
121 122 2.688214 GCCTGTGAGGAGATCTGGTCTA 60.688 54.545 0.00 0.00 37.67 2.59
122 123 3.221771 CCTGTGAGGAGATCTGGTCTAG 58.778 54.545 0.00 0.13 37.67 2.43
123 124 3.221771 CTGTGAGGAGATCTGGTCTAGG 58.778 54.545 0.00 0.00 37.29 3.02
124 125 2.583101 TGTGAGGAGATCTGGTCTAGGT 59.417 50.000 0.00 0.00 37.29 3.08
125 126 3.011821 TGTGAGGAGATCTGGTCTAGGTT 59.988 47.826 0.00 0.00 37.29 3.50
126 127 3.383185 GTGAGGAGATCTGGTCTAGGTTG 59.617 52.174 0.00 0.00 37.29 3.77
127 128 3.011821 TGAGGAGATCTGGTCTAGGTTGT 59.988 47.826 0.00 0.00 37.29 3.32
128 129 4.027437 GAGGAGATCTGGTCTAGGTTGTT 58.973 47.826 0.00 0.00 37.29 2.83
129 130 5.202004 GAGGAGATCTGGTCTAGGTTGTTA 58.798 45.833 0.00 0.00 37.29 2.41
130 131 5.205056 AGGAGATCTGGTCTAGGTTGTTAG 58.795 45.833 0.00 0.00 37.29 2.34
131 132 4.202172 GGAGATCTGGTCTAGGTTGTTAGC 60.202 50.000 0.00 0.00 37.29 3.09
132 133 4.353777 AGATCTGGTCTAGGTTGTTAGCA 58.646 43.478 0.00 0.00 34.69 3.49
133 134 4.404073 AGATCTGGTCTAGGTTGTTAGCAG 59.596 45.833 0.00 0.00 38.49 4.24
134 135 3.507411 TCTGGTCTAGGTTGTTAGCAGT 58.493 45.455 6.11 0.00 38.34 4.40
135 136 3.901844 TCTGGTCTAGGTTGTTAGCAGTT 59.098 43.478 6.11 0.00 38.34 3.16
136 137 3.997021 CTGGTCTAGGTTGTTAGCAGTTG 59.003 47.826 0.00 0.00 33.81 3.16
137 138 3.244422 TGGTCTAGGTTGTTAGCAGTTGG 60.244 47.826 0.00 0.00 0.00 3.77
138 139 3.244457 GGTCTAGGTTGTTAGCAGTTGGT 60.244 47.826 0.00 0.00 0.00 3.67
139 140 3.746492 GTCTAGGTTGTTAGCAGTTGGTG 59.254 47.826 0.00 0.00 0.00 4.17
140 141 2.729028 AGGTTGTTAGCAGTTGGTGT 57.271 45.000 0.00 0.00 0.00 4.16
141 142 2.572290 AGGTTGTTAGCAGTTGGTGTC 58.428 47.619 0.00 0.00 0.00 3.67
142 143 1.607148 GGTTGTTAGCAGTTGGTGTCC 59.393 52.381 0.00 0.00 0.00 4.02
143 144 2.572290 GTTGTTAGCAGTTGGTGTCCT 58.428 47.619 0.00 0.00 0.00 3.85
144 145 2.543777 TGTTAGCAGTTGGTGTCCTC 57.456 50.000 0.00 0.00 0.00 3.71
145 146 1.765904 TGTTAGCAGTTGGTGTCCTCA 59.234 47.619 0.00 0.00 0.00 3.86
146 147 2.371841 TGTTAGCAGTTGGTGTCCTCAT 59.628 45.455 0.00 0.00 0.00 2.90
147 148 2.744202 GTTAGCAGTTGGTGTCCTCATG 59.256 50.000 0.00 0.00 0.00 3.07
148 149 0.767375 AGCAGTTGGTGTCCTCATGT 59.233 50.000 0.00 0.00 0.00 3.21
149 150 1.977854 AGCAGTTGGTGTCCTCATGTA 59.022 47.619 0.00 0.00 0.00 2.29
150 151 2.027745 AGCAGTTGGTGTCCTCATGTAG 60.028 50.000 0.00 0.00 0.00 2.74
151 152 2.289694 GCAGTTGGTGTCCTCATGTAGT 60.290 50.000 0.00 0.00 0.00 2.73
152 153 3.807209 GCAGTTGGTGTCCTCATGTAGTT 60.807 47.826 0.00 0.00 0.00 2.24
153 154 3.748048 CAGTTGGTGTCCTCATGTAGTTG 59.252 47.826 0.00 0.00 0.00 3.16
154 155 3.074412 GTTGGTGTCCTCATGTAGTTGG 58.926 50.000 0.00 0.00 0.00 3.77
155 156 1.003118 TGGTGTCCTCATGTAGTTGGC 59.997 52.381 0.00 0.00 0.00 4.52
156 157 1.679032 GGTGTCCTCATGTAGTTGGCC 60.679 57.143 0.00 0.00 0.00 5.36
157 158 0.618458 TGTCCTCATGTAGTTGGCCC 59.382 55.000 0.00 0.00 0.00 5.80
158 159 0.462047 GTCCTCATGTAGTTGGCCCG 60.462 60.000 0.00 0.00 0.00 6.13
159 160 1.153168 CCTCATGTAGTTGGCCCGG 60.153 63.158 0.00 0.00 0.00 5.73
160 161 1.153168 CTCATGTAGTTGGCCCGGG 60.153 63.158 19.09 19.09 0.00 5.73
161 162 2.124320 CATGTAGTTGGCCCGGGG 60.124 66.667 25.28 9.31 0.00 5.73
162 163 2.612746 ATGTAGTTGGCCCGGGGT 60.613 61.111 25.28 0.00 0.00 4.95
163 164 2.978946 ATGTAGTTGGCCCGGGGTG 61.979 63.158 25.28 0.00 0.00 4.61
164 165 3.643554 GTAGTTGGCCCGGGGTGT 61.644 66.667 25.28 0.00 0.00 4.16
165 166 3.642503 TAGTTGGCCCGGGGTGTG 61.643 66.667 25.28 0.00 0.00 3.82
167 168 4.589675 GTTGGCCCGGGGTGTGAA 62.590 66.667 25.28 0.00 0.00 3.18
168 169 4.278513 TTGGCCCGGGGTGTGAAG 62.279 66.667 25.28 0.00 0.00 3.02
170 171 3.728373 GGCCCGGGGTGTGAAGAT 61.728 66.667 25.28 0.00 0.00 2.40
171 172 2.438434 GCCCGGGGTGTGAAGATG 60.438 66.667 25.28 0.00 0.00 2.90
172 173 3.077907 CCCGGGGTGTGAAGATGT 58.922 61.111 14.71 0.00 0.00 3.06
173 174 1.378762 CCCGGGGTGTGAAGATGTT 59.621 57.895 14.71 0.00 0.00 2.71
174 175 0.960364 CCCGGGGTGTGAAGATGTTG 60.960 60.000 14.71 0.00 0.00 3.33
175 176 0.960364 CCGGGGTGTGAAGATGTTGG 60.960 60.000 0.00 0.00 0.00 3.77
176 177 0.250727 CGGGGTGTGAAGATGTTGGT 60.251 55.000 0.00 0.00 0.00 3.67
177 178 1.247567 GGGGTGTGAAGATGTTGGTG 58.752 55.000 0.00 0.00 0.00 4.17
178 179 0.598065 GGGTGTGAAGATGTTGGTGC 59.402 55.000 0.00 0.00 0.00 5.01
179 180 1.317613 GGTGTGAAGATGTTGGTGCA 58.682 50.000 0.00 0.00 0.00 4.57
180 181 1.888512 GGTGTGAAGATGTTGGTGCAT 59.111 47.619 0.00 0.00 0.00 3.96
181 182 2.095059 GGTGTGAAGATGTTGGTGCATC 60.095 50.000 0.00 0.00 44.02 3.91
182 183 2.553602 GTGTGAAGATGTTGGTGCATCA 59.446 45.455 0.00 0.00 45.58 3.07
183 184 2.815503 TGTGAAGATGTTGGTGCATCAG 59.184 45.455 0.00 0.00 45.58 2.90
184 185 3.076621 GTGAAGATGTTGGTGCATCAGA 58.923 45.455 0.00 0.00 45.58 3.27
185 186 3.503363 GTGAAGATGTTGGTGCATCAGAA 59.497 43.478 0.00 0.00 45.58 3.02
186 187 4.157289 GTGAAGATGTTGGTGCATCAGAAT 59.843 41.667 0.00 0.00 45.58 2.40
187 188 5.355071 GTGAAGATGTTGGTGCATCAGAATA 59.645 40.000 0.00 0.00 45.58 1.75
188 189 5.945191 TGAAGATGTTGGTGCATCAGAATAA 59.055 36.000 0.00 0.00 45.58 1.40
189 190 6.094464 TGAAGATGTTGGTGCATCAGAATAAG 59.906 38.462 0.00 0.00 45.58 1.73
190 191 5.503927 AGATGTTGGTGCATCAGAATAAGT 58.496 37.500 0.00 0.00 45.58 2.24
191 192 5.356190 AGATGTTGGTGCATCAGAATAAGTG 59.644 40.000 0.00 0.00 45.58 3.16
192 193 3.191162 TGTTGGTGCATCAGAATAAGTGC 59.809 43.478 0.00 0.00 38.05 4.40
193 194 2.368439 TGGTGCATCAGAATAAGTGCC 58.632 47.619 0.00 0.00 36.79 5.01
194 195 2.025981 TGGTGCATCAGAATAAGTGCCT 60.026 45.455 0.00 0.00 36.79 4.75
195 196 2.615912 GGTGCATCAGAATAAGTGCCTC 59.384 50.000 0.00 0.00 36.79 4.70
196 197 2.615912 GTGCATCAGAATAAGTGCCTCC 59.384 50.000 0.00 0.00 36.79 4.30
197 198 2.507058 TGCATCAGAATAAGTGCCTCCT 59.493 45.455 0.00 0.00 36.79 3.69
198 199 3.054139 TGCATCAGAATAAGTGCCTCCTT 60.054 43.478 0.00 0.00 36.79 3.36
199 200 3.563390 GCATCAGAATAAGTGCCTCCTTC 59.437 47.826 0.00 0.00 0.00 3.46
200 201 3.914426 TCAGAATAAGTGCCTCCTTCC 57.086 47.619 0.00 0.00 0.00 3.46
201 202 3.454858 TCAGAATAAGTGCCTCCTTCCT 58.545 45.455 0.00 0.00 0.00 3.36
202 203 3.452627 TCAGAATAAGTGCCTCCTTCCTC 59.547 47.826 0.00 0.00 0.00 3.71
203 204 2.774809 AGAATAAGTGCCTCCTTCCTCC 59.225 50.000 0.00 0.00 0.00 4.30
204 205 2.270434 ATAAGTGCCTCCTTCCTCCA 57.730 50.000 0.00 0.00 0.00 3.86
205 206 2.270434 TAAGTGCCTCCTTCCTCCAT 57.730 50.000 0.00 0.00 0.00 3.41
206 207 1.376649 AAGTGCCTCCTTCCTCCATT 58.623 50.000 0.00 0.00 0.00 3.16
207 208 0.622665 AGTGCCTCCTTCCTCCATTG 59.377 55.000 0.00 0.00 0.00 2.82
208 209 1.034292 GTGCCTCCTTCCTCCATTGC 61.034 60.000 0.00 0.00 0.00 3.56
209 210 1.304282 GCCTCCTTCCTCCATTGCA 59.696 57.895 0.00 0.00 0.00 4.08
210 211 1.034292 GCCTCCTTCCTCCATTGCAC 61.034 60.000 0.00 0.00 0.00 4.57
211 212 0.394899 CCTCCTTCCTCCATTGCACC 60.395 60.000 0.00 0.00 0.00 5.01
212 213 0.329261 CTCCTTCCTCCATTGCACCA 59.671 55.000 0.00 0.00 0.00 4.17
213 214 0.329261 TCCTTCCTCCATTGCACCAG 59.671 55.000 0.00 0.00 0.00 4.00
214 215 1.318158 CCTTCCTCCATTGCACCAGC 61.318 60.000 0.00 0.00 42.57 4.85
227 228 2.336088 CCAGCACTGGTTTTGGCG 59.664 61.111 8.61 0.00 45.53 5.69
228 229 2.489275 CCAGCACTGGTTTTGGCGT 61.489 57.895 8.61 0.00 45.53 5.68
229 230 1.008538 CAGCACTGGTTTTGGCGTC 60.009 57.895 0.00 0.00 0.00 5.19
230 231 2.051345 GCACTGGTTTTGGCGTCG 60.051 61.111 0.00 0.00 0.00 5.12
231 232 2.830285 GCACTGGTTTTGGCGTCGT 61.830 57.895 0.00 0.00 0.00 4.34
232 233 1.278637 CACTGGTTTTGGCGTCGTC 59.721 57.895 0.00 0.00 0.00 4.20
233 234 2.241880 ACTGGTTTTGGCGTCGTCG 61.242 57.895 0.00 0.00 40.37 5.12
234 235 2.950172 CTGGTTTTGGCGTCGTCGG 61.950 63.158 3.90 0.00 37.56 4.79
235 236 3.719144 GGTTTTGGCGTCGTCGGG 61.719 66.667 3.90 0.00 37.56 5.14
236 237 2.662527 GTTTTGGCGTCGTCGGGA 60.663 61.111 3.90 0.00 37.56 5.14
237 238 2.356553 TTTTGGCGTCGTCGGGAG 60.357 61.111 3.90 0.00 37.56 4.30
238 239 3.869473 TTTTGGCGTCGTCGGGAGG 62.869 63.158 3.90 0.00 37.56 4.30
250 251 2.689771 GGGAGGCCCGGTCCTTTA 60.690 66.667 5.01 0.00 36.38 1.85
251 252 2.743179 GGGAGGCCCGGTCCTTTAG 61.743 68.421 5.01 0.00 36.38 1.85
252 253 2.743179 GGAGGCCCGGTCCTTTAGG 61.743 68.421 5.01 0.00 36.38 2.69
253 254 1.993948 GAGGCCCGGTCCTTTAGGT 60.994 63.158 5.01 0.00 36.38 3.08
254 255 1.969200 GAGGCCCGGTCCTTTAGGTC 61.969 65.000 5.01 0.00 36.38 3.85
255 256 2.295602 GGCCCGGTCCTTTAGGTCA 61.296 63.158 0.00 0.00 36.34 4.02
256 257 1.632965 GGCCCGGTCCTTTAGGTCAT 61.633 60.000 0.00 0.00 36.34 3.06
257 258 0.463833 GCCCGGTCCTTTAGGTCATG 60.464 60.000 0.00 0.00 36.34 3.07
258 259 0.463833 CCCGGTCCTTTAGGTCATGC 60.464 60.000 0.00 0.00 36.34 4.06
259 260 0.810031 CCGGTCCTTTAGGTCATGCG 60.810 60.000 0.00 0.00 36.34 4.73
260 261 0.174845 CGGTCCTTTAGGTCATGCGA 59.825 55.000 0.00 0.00 36.34 5.10
261 262 1.802880 CGGTCCTTTAGGTCATGCGAG 60.803 57.143 0.00 0.00 36.34 5.03
262 263 1.207329 GGTCCTTTAGGTCATGCGAGT 59.793 52.381 0.00 0.00 36.34 4.18
263 264 2.429610 GGTCCTTTAGGTCATGCGAGTA 59.570 50.000 0.00 0.00 36.34 2.59
264 265 3.118884 GGTCCTTTAGGTCATGCGAGTAA 60.119 47.826 0.00 0.00 36.34 2.24
265 266 4.501071 GTCCTTTAGGTCATGCGAGTAAA 58.499 43.478 0.00 0.00 36.34 2.01
266 267 5.116882 GTCCTTTAGGTCATGCGAGTAAAT 58.883 41.667 0.00 0.00 36.34 1.40
267 268 5.585047 GTCCTTTAGGTCATGCGAGTAAATT 59.415 40.000 0.00 0.00 36.34 1.82
268 269 6.759827 GTCCTTTAGGTCATGCGAGTAAATTA 59.240 38.462 0.00 0.00 36.34 1.40
269 270 6.759827 TCCTTTAGGTCATGCGAGTAAATTAC 59.240 38.462 0.00 0.00 36.34 1.89
270 271 6.018180 CCTTTAGGTCATGCGAGTAAATTACC 60.018 42.308 0.00 0.00 0.00 2.85
271 272 4.755266 AGGTCATGCGAGTAAATTACCT 57.245 40.909 0.00 0.00 0.00 3.08
272 273 4.694339 AGGTCATGCGAGTAAATTACCTC 58.306 43.478 0.00 0.00 30.31 3.85
273 274 4.161565 AGGTCATGCGAGTAAATTACCTCA 59.838 41.667 0.00 0.00 30.31 3.86
274 275 4.270325 GGTCATGCGAGTAAATTACCTCAC 59.730 45.833 0.00 0.00 0.00 3.51
275 276 4.270325 GTCATGCGAGTAAATTACCTCACC 59.730 45.833 0.00 0.00 0.00 4.02
276 277 2.883574 TGCGAGTAAATTACCTCACCG 58.116 47.619 0.00 0.00 0.00 4.94
277 278 2.199236 GCGAGTAAATTACCTCACCGG 58.801 52.381 0.00 0.00 39.35 5.28
278 279 2.159198 GCGAGTAAATTACCTCACCGGA 60.159 50.000 9.46 0.00 36.31 5.14
279 280 3.676873 GCGAGTAAATTACCTCACCGGAA 60.677 47.826 9.46 0.00 36.31 4.30
280 281 4.110482 CGAGTAAATTACCTCACCGGAAG 58.890 47.826 9.46 4.83 36.31 3.46
281 282 4.142315 CGAGTAAATTACCTCACCGGAAGA 60.142 45.833 9.46 4.56 36.31 2.87
282 283 5.622914 CGAGTAAATTACCTCACCGGAAGAA 60.623 44.000 9.46 0.00 36.31 2.52
283 284 6.117975 AGTAAATTACCTCACCGGAAGAAA 57.882 37.500 9.46 3.81 36.31 2.52
284 285 6.536447 AGTAAATTACCTCACCGGAAGAAAA 58.464 36.000 9.46 3.46 36.31 2.29
285 286 6.999871 AGTAAATTACCTCACCGGAAGAAAAA 59.000 34.615 9.46 0.76 36.31 1.94
309 310 3.615224 TGGGAATAACTTACCACCGAC 57.385 47.619 0.00 0.00 40.69 4.79
310 311 2.094078 TGGGAATAACTTACCACCGACG 60.094 50.000 0.00 0.00 40.69 5.12
311 312 2.166254 GGGAATAACTTACCACCGACGA 59.834 50.000 0.00 0.00 35.16 4.20
312 313 3.181472 GGGAATAACTTACCACCGACGAT 60.181 47.826 0.00 0.00 35.16 3.73
313 314 3.800506 GGAATAACTTACCACCGACGATG 59.199 47.826 0.00 0.00 0.00 3.84
314 315 2.282701 TAACTTACCACCGACGATGC 57.717 50.000 0.00 0.00 0.00 3.91
315 316 0.606604 AACTTACCACCGACGATGCT 59.393 50.000 0.00 0.00 0.00 3.79
316 317 0.606604 ACTTACCACCGACGATGCTT 59.393 50.000 0.00 0.00 0.00 3.91
317 318 1.001633 ACTTACCACCGACGATGCTTT 59.998 47.619 0.00 0.00 0.00 3.51
318 319 1.659098 CTTACCACCGACGATGCTTTC 59.341 52.381 0.00 0.00 0.00 2.62
319 320 0.604073 TACCACCGACGATGCTTTCA 59.396 50.000 0.00 0.00 0.00 2.69
320 321 0.949105 ACCACCGACGATGCTTTCAC 60.949 55.000 0.00 0.00 0.00 3.18
321 322 0.948623 CCACCGACGATGCTTTCACA 60.949 55.000 0.00 0.00 0.00 3.58
322 323 1.078709 CACCGACGATGCTTTCACAT 58.921 50.000 0.00 0.00 0.00 3.21
323 324 1.061131 CACCGACGATGCTTTCACATC 59.939 52.381 0.00 0.00 42.52 3.06
324 325 1.337728 ACCGACGATGCTTTCACATCA 60.338 47.619 0.00 0.00 45.56 3.07
325 326 1.325640 CCGACGATGCTTTCACATCAG 59.674 52.381 0.00 1.36 45.56 2.90
326 327 1.995484 CGACGATGCTTTCACATCAGT 59.005 47.619 5.46 4.14 45.56 3.41
327 328 2.413112 CGACGATGCTTTCACATCAGTT 59.587 45.455 5.46 0.00 45.56 3.16
328 329 3.482598 CGACGATGCTTTCACATCAGTTC 60.483 47.826 5.46 0.00 45.56 3.01
329 330 3.402110 ACGATGCTTTCACATCAGTTCA 58.598 40.909 5.46 0.00 45.56 3.18
330 331 4.005650 ACGATGCTTTCACATCAGTTCAT 58.994 39.130 5.46 0.00 45.56 2.57
340 341 0.603707 ATCAGTTCATATGCCGCCGG 60.604 55.000 0.00 0.00 0.00 6.13
345 346 2.933878 TTCATATGCCGCCGGTGGTC 62.934 60.000 33.67 25.23 0.00 4.02
358 359 3.000727 CCGGTGGTCTCTTCAATAACAC 58.999 50.000 0.00 0.00 0.00 3.32
359 360 3.000727 CGGTGGTCTCTTCAATAACACC 58.999 50.000 0.00 0.00 42.50 4.16
365 366 4.263331 GGTCTCTTCAATAACACCCCTCAA 60.263 45.833 0.00 0.00 0.00 3.02
367 368 5.355350 GTCTCTTCAATAACACCCCTCAATG 59.645 44.000 0.00 0.00 0.00 2.82
400 401 0.613777 CTAGGTGTGGTTGGGTCTCC 59.386 60.000 0.00 0.00 0.00 3.71
403 404 1.004918 GTGTGGTTGGGTCTCCTCG 60.005 63.158 0.00 0.00 0.00 4.63
404 405 2.047179 GTGGTTGGGTCTCCTCGC 60.047 66.667 0.00 0.00 0.00 5.03
415 416 2.602267 TCCTCGCCCGACCTTCAA 60.602 61.111 0.00 0.00 0.00 2.69
417 418 1.078426 CCTCGCCCGACCTTCAATT 60.078 57.895 0.00 0.00 0.00 2.32
425 426 3.119814 GCCCGACCTTCAATTTTCTTCTC 60.120 47.826 0.00 0.00 0.00 2.87
427 428 3.125316 CCGACCTTCAATTTTCTTCTCCG 59.875 47.826 0.00 0.00 0.00 4.63
431 432 4.263949 ACCTTCAATTTTCTTCTCCGGGAT 60.264 41.667 0.00 0.00 0.00 3.85
439 440 5.546621 TTTCTTCTCCGGGATCGATAATT 57.453 39.130 0.00 0.00 39.00 1.40
458 459 2.654749 TCGTGCTTCGAATCATCACT 57.345 45.000 4.82 0.00 45.98 3.41
460 461 1.995484 CGTGCTTCGAATCATCACTGT 59.005 47.619 4.82 0.00 42.86 3.55
461 462 2.028523 CGTGCTTCGAATCATCACTGTC 59.971 50.000 4.82 0.00 42.86 3.51
463 464 2.094752 TGCTTCGAATCATCACTGTCGA 60.095 45.455 0.00 0.00 40.51 4.20
464 465 3.119291 GCTTCGAATCATCACTGTCGAT 58.881 45.455 0.00 0.00 41.69 3.59
468 469 2.800985 CGAATCATCACTGTCGATGCCT 60.801 50.000 12.43 5.23 42.15 4.75
471 472 0.463204 CATCACTGTCGATGCCTCCT 59.537 55.000 0.00 0.00 36.64 3.69
473 474 1.393603 TCACTGTCGATGCCTCCTAG 58.606 55.000 0.00 0.00 0.00 3.02
490 491 4.433615 TCCTAGCAACATTCGATGTCTTC 58.566 43.478 0.00 0.00 44.07 2.87
492 493 4.505922 CCTAGCAACATTCGATGTCTTCTC 59.494 45.833 0.00 0.00 44.07 2.87
496 497 3.152261 ACATTCGATGTCTTCTCGTCC 57.848 47.619 0.00 0.00 39.92 4.79
505 506 0.976641 TCTTCTCGTCCATGTTGGCT 59.023 50.000 0.00 0.00 37.47 4.75
509 510 2.819595 CGTCCATGTTGGCTCCGG 60.820 66.667 0.00 0.00 37.47 5.14
513 514 1.819632 CCATGTTGGCTCCGGCTAC 60.820 63.158 0.00 0.00 38.73 3.58
517 518 4.451150 TTGGCTCCGGCTACGCAG 62.451 66.667 0.00 0.00 39.22 5.18
531 532 1.034838 ACGCAGACCAGGTGCAAAAA 61.035 50.000 0.00 0.00 41.26 1.94
532 533 0.314935 CGCAGACCAGGTGCAAAAAT 59.685 50.000 0.00 0.00 41.26 1.82
533 534 1.666888 CGCAGACCAGGTGCAAAAATC 60.667 52.381 0.00 0.00 41.26 2.17
539 540 1.401931 CCAGGTGCAAAAATCGAGCTG 60.402 52.381 0.00 0.00 34.43 4.24
543 544 1.198637 GTGCAAAAATCGAGCTGAGCT 59.801 47.619 6.69 6.69 43.88 4.09
552 553 4.427661 AGCTGAGCTCACGTCGCC 62.428 66.667 13.74 0.00 30.62 5.54
578 580 0.533032 GGCTGGCGAGTAAGAGAAGT 59.467 55.000 0.00 0.00 0.00 3.01
580 582 1.202582 GCTGGCGAGTAAGAGAAGTCA 59.797 52.381 0.00 0.00 0.00 3.41
581 583 2.869897 CTGGCGAGTAAGAGAAGTCAC 58.130 52.381 0.00 0.00 0.00 3.67
582 584 1.544691 TGGCGAGTAAGAGAAGTCACC 59.455 52.381 0.00 0.00 0.00 4.02
588 590 4.882427 CGAGTAAGAGAAGTCACCCATCTA 59.118 45.833 0.00 0.00 0.00 1.98
589 591 5.357314 CGAGTAAGAGAAGTCACCCATCTAA 59.643 44.000 0.00 0.00 0.00 2.10
590 592 6.039941 CGAGTAAGAGAAGTCACCCATCTAAT 59.960 42.308 0.00 0.00 0.00 1.73
596 599 3.543680 AGTCACCCATCTAATTGGACG 57.456 47.619 0.00 0.00 39.25 4.79
599 602 2.569853 TCACCCATCTAATTGGACGTGT 59.430 45.455 0.00 1.04 39.25 4.49
601 604 2.838202 ACCCATCTAATTGGACGTGTCT 59.162 45.455 0.00 0.00 39.25 3.41
610 613 9.661563 ATCTAATTGGACGTGTCTGTAATTTTA 57.338 29.630 0.00 5.72 0.00 1.52
614 617 8.964420 ATTGGACGTGTCTGTAATTTTAAATG 57.036 30.769 0.00 0.00 0.00 2.32
619 622 9.321590 GACGTGTCTGTAATTTTAAATGTTACC 57.678 33.333 15.67 6.65 0.00 2.85
620 623 9.059260 ACGTGTCTGTAATTTTAAATGTTACCT 57.941 29.630 15.67 0.00 0.00 3.08
637 640 9.801873 AATGTTACCTGTGTTGATTTTATATGC 57.198 29.630 0.00 0.00 0.00 3.14
638 641 7.767261 TGTTACCTGTGTTGATTTTATATGCC 58.233 34.615 0.00 0.00 0.00 4.40
639 642 7.613801 TGTTACCTGTGTTGATTTTATATGCCT 59.386 33.333 0.00 0.00 0.00 4.75
640 643 6.699575 ACCTGTGTTGATTTTATATGCCTC 57.300 37.500 0.00 0.00 0.00 4.70
641 644 6.186957 ACCTGTGTTGATTTTATATGCCTCA 58.813 36.000 0.00 0.00 0.00 3.86
642 645 6.835488 ACCTGTGTTGATTTTATATGCCTCAT 59.165 34.615 0.00 0.00 0.00 2.90
643 646 7.342799 ACCTGTGTTGATTTTATATGCCTCATT 59.657 33.333 0.00 0.00 0.00 2.57
644 647 8.199449 CCTGTGTTGATTTTATATGCCTCATTT 58.801 33.333 0.00 0.00 0.00 2.32
645 648 9.590451 CTGTGTTGATTTTATATGCCTCATTTT 57.410 29.630 0.00 0.00 0.00 1.82
646 649 9.368674 TGTGTTGATTTTATATGCCTCATTTTG 57.631 29.630 0.00 0.00 0.00 2.44
647 650 9.369904 GTGTTGATTTTATATGCCTCATTTTGT 57.630 29.630 0.00 0.00 0.00 2.83
648 651 9.941325 TGTTGATTTTATATGCCTCATTTTGTT 57.059 25.926 0.00 0.00 0.00 2.83
658 661 7.862512 ATGCCTCATTTTGTTTTCTTTGAAA 57.137 28.000 0.00 0.00 0.00 2.69
659 662 7.862512 TGCCTCATTTTGTTTTCTTTGAAAT 57.137 28.000 0.00 0.00 0.00 2.17
660 663 8.954950 TGCCTCATTTTGTTTTCTTTGAAATA 57.045 26.923 0.00 0.00 0.00 1.40
661 664 9.558396 TGCCTCATTTTGTTTTCTTTGAAATAT 57.442 25.926 0.00 0.00 0.00 1.28
662 665 9.815936 GCCTCATTTTGTTTTCTTTGAAATATG 57.184 29.630 0.00 0.00 0.00 1.78
699 702 4.543590 TTGAAGGGATGTCTCAGACTTC 57.456 45.455 11.51 11.51 36.43 3.01
707 710 8.380742 AGGGATGTCTCAGACTTCTTTAATAA 57.619 34.615 17.77 0.00 37.06 1.40
734 797 8.728596 ACTACTATATATGGCTTCTCACCTTT 57.271 34.615 0.00 0.00 0.00 3.11
741 804 4.385358 TGGCTTCTCACCTTTTGAAAAC 57.615 40.909 0.00 0.00 32.21 2.43
748 811 7.201470 GCTTCTCACCTTTTGAAAACAGAAAAG 60.201 37.037 0.00 0.00 38.41 2.27
749 812 7.461182 TCTCACCTTTTGAAAACAGAAAAGA 57.539 32.000 0.00 0.00 40.25 2.52
750 813 7.538575 TCTCACCTTTTGAAAACAGAAAAGAG 58.461 34.615 0.00 0.00 40.25 2.85
751 814 7.393234 TCTCACCTTTTGAAAACAGAAAAGAGA 59.607 33.333 0.00 0.00 40.25 3.10
752 815 7.891561 TCACCTTTTGAAAACAGAAAAGAGAA 58.108 30.769 0.00 0.00 40.25 2.87
753 816 8.364142 TCACCTTTTGAAAACAGAAAAGAGAAA 58.636 29.630 0.00 0.00 40.25 2.52
754 817 9.154847 CACCTTTTGAAAACAGAAAAGAGAAAT 57.845 29.630 0.00 0.00 40.25 2.17
755 818 9.154847 ACCTTTTGAAAACAGAAAAGAGAAATG 57.845 29.630 0.00 0.00 40.25 2.32
756 819 9.369904 CCTTTTGAAAACAGAAAAGAGAAATGA 57.630 29.630 0.00 0.00 40.25 2.57
761 824 9.316730 TGAAAACAGAAAAGAGAAATGAAATGG 57.683 29.630 0.00 0.00 0.00 3.16
762 825 7.719778 AAACAGAAAAGAGAAATGAAATGGC 57.280 32.000 0.00 0.00 0.00 4.40
773 836 0.178995 TGAAATGGCACCTCACTGCA 60.179 50.000 0.00 0.00 39.08 4.41
782 845 2.141517 CACCTCACTGCAGAAAGAGTG 58.858 52.381 23.35 19.40 40.89 3.51
785 848 3.065655 CCTCACTGCAGAAAGAGTGAAG 58.934 50.000 23.35 3.10 46.09 3.02
790 853 5.824624 TCACTGCAGAAAGAGTGAAGAAAAT 59.175 36.000 23.35 0.00 44.38 1.82
791 854 5.913514 CACTGCAGAAAGAGTGAAGAAAATG 59.086 40.000 23.35 0.00 41.90 2.32
792 855 5.591877 ACTGCAGAAAGAGTGAAGAAAATGT 59.408 36.000 23.35 0.00 0.00 2.71
793 856 6.096001 ACTGCAGAAAGAGTGAAGAAAATGTT 59.904 34.615 23.35 0.00 0.00 2.71
832 897 3.103911 AGCGCTCGAAAACGACCG 61.104 61.111 2.64 0.00 0.00 4.79
833 898 3.101428 GCGCTCGAAAACGACCGA 61.101 61.111 0.00 0.00 0.00 4.69
856 921 2.776072 GCGCGTGTTATCGTTGCT 59.224 55.556 8.43 0.00 33.90 3.91
883 962 1.315257 CCTTGTCAAGCCGGGGAATG 61.315 60.000 2.18 0.00 0.00 2.67
887 966 1.253100 GTCAAGCCGGGGAATGAAAA 58.747 50.000 2.18 0.00 0.00 2.29
889 968 0.246360 CAAGCCGGGGAATGAAAACC 59.754 55.000 2.18 0.00 0.00 3.27
891 970 2.882132 CCGGGGAATGAAAACCGC 59.118 61.111 0.00 0.00 44.70 5.68
896 975 2.180769 GAATGAAAACCGCCCGGC 59.819 61.111 6.63 0.00 39.32 6.13
978 1062 1.007336 CCGACCCAAAAGACTCGTCG 61.007 60.000 0.00 0.00 44.41 5.12
987 1071 2.799814 AAGACTCGTCGAGCTCCCGA 62.800 60.000 22.00 18.70 36.06 5.14
1011 1095 1.375853 TTTCCAAGATGGCCATCGCG 61.376 55.000 34.48 28.48 42.48 5.87
1042 1129 4.016629 TGGTGACGACGACGACGG 62.017 66.667 22.36 6.21 44.46 4.79
1386 1488 3.755628 GTGGAGGCCGTCGTGCTA 61.756 66.667 0.00 0.00 0.00 3.49
1476 1584 7.931948 AGCTATGTACTCTGTTACTGTTTGTTT 59.068 33.333 0.00 0.00 0.00 2.83
1480 1588 8.774890 TGTACTCTGTTACTGTTTGTTTGTTA 57.225 30.769 0.00 0.00 0.00 2.41
1483 1591 8.331730 ACTCTGTTACTGTTTGTTTGTTACTT 57.668 30.769 0.00 0.00 0.00 2.24
1484 1592 8.234546 ACTCTGTTACTGTTTGTTTGTTACTTG 58.765 33.333 0.00 0.00 0.00 3.16
1485 1593 7.024768 TCTGTTACTGTTTGTTTGTTACTTGC 58.975 34.615 0.00 0.00 0.00 4.01
1486 1594 6.915349 TGTTACTGTTTGTTTGTTACTTGCT 58.085 32.000 0.00 0.00 0.00 3.91
1547 1664 6.075310 CGATCGACTACTCTGCTGTAAATTTC 60.075 42.308 10.26 0.00 0.00 2.17
1550 1667 4.504858 ACTACTCTGCTGTAAATTTCCCG 58.495 43.478 0.00 0.00 0.00 5.14
1553 1670 1.173043 CTGCTGTAAATTTCCCGCCA 58.827 50.000 0.00 0.00 0.00 5.69
1563 1680 2.002505 TTTCCCGCCATGAGGAAAAA 57.997 45.000 17.22 10.70 46.55 1.94
1599 1716 4.643334 TCCCAATCTGCTCAAGATGATTTG 59.357 41.667 0.00 0.00 45.37 2.32
1613 1730 0.594110 GATTTGCGTCGTTTGGGGAA 59.406 50.000 0.00 0.00 0.00 3.97
1614 1731 1.201414 GATTTGCGTCGTTTGGGGAAT 59.799 47.619 0.00 0.00 0.00 3.01
1615 1732 0.312416 TTTGCGTCGTTTGGGGAATG 59.688 50.000 0.00 0.00 0.00 2.67
1616 1733 1.519751 TTGCGTCGTTTGGGGAATGG 61.520 55.000 0.00 0.00 0.00 3.16
1617 1734 2.696759 GCGTCGTTTGGGGAATGGG 61.697 63.158 0.00 0.00 0.00 4.00
1619 1736 1.381076 GTCGTTTGGGGAATGGGGA 59.619 57.895 0.00 0.00 0.00 4.81
1620 1737 0.033503 GTCGTTTGGGGAATGGGGAT 60.034 55.000 0.00 0.00 0.00 3.85
1640 1765 4.569162 GGATGATGGTGTGATGCAATTTTG 59.431 41.667 0.00 0.00 0.00 2.44
1641 1766 4.603989 TGATGGTGTGATGCAATTTTGT 57.396 36.364 0.00 0.00 0.00 2.83
1642 1767 5.718724 TGATGGTGTGATGCAATTTTGTA 57.281 34.783 0.00 0.00 0.00 2.41
1643 1768 5.468592 TGATGGTGTGATGCAATTTTGTAC 58.531 37.500 0.00 0.00 0.00 2.90
1644 1769 5.243507 TGATGGTGTGATGCAATTTTGTACT 59.756 36.000 0.00 0.00 0.00 2.73
1645 1770 4.869215 TGGTGTGATGCAATTTTGTACTG 58.131 39.130 0.00 0.00 0.00 2.74
1646 1771 4.340666 TGGTGTGATGCAATTTTGTACTGT 59.659 37.500 0.00 0.00 0.00 3.55
1647 1772 5.532779 TGGTGTGATGCAATTTTGTACTGTA 59.467 36.000 0.00 0.00 0.00 2.74
1648 1773 6.208402 TGGTGTGATGCAATTTTGTACTGTAT 59.792 34.615 0.00 0.00 0.00 2.29
1649 1774 6.527722 GGTGTGATGCAATTTTGTACTGTATG 59.472 38.462 0.00 0.00 0.00 2.39
1650 1775 7.083858 GTGTGATGCAATTTTGTACTGTATGT 58.916 34.615 0.00 0.00 0.00 2.29
1651 1776 7.594758 GTGTGATGCAATTTTGTACTGTATGTT 59.405 33.333 0.00 0.00 0.00 2.71
1652 1777 7.807433 TGTGATGCAATTTTGTACTGTATGTTC 59.193 33.333 0.00 0.00 0.00 3.18
1666 1791 4.075682 TGTATGTTCATTTTTGGAGCCGA 58.924 39.130 0.00 0.00 0.00 5.54
1667 1792 4.704540 TGTATGTTCATTTTTGGAGCCGAT 59.295 37.500 0.00 0.00 0.00 4.18
1680 1805 3.689161 TGGAGCCGATGAGTTGTTTATTG 59.311 43.478 0.00 0.00 0.00 1.90
1681 1806 3.689649 GGAGCCGATGAGTTGTTTATTGT 59.310 43.478 0.00 0.00 0.00 2.71
1684 1809 6.128117 GGAGCCGATGAGTTGTTTATTGTAAA 60.128 38.462 0.00 0.00 0.00 2.01
1705 1831 1.612469 CTGTCGCTGTCTCGTGCAAG 61.612 60.000 0.00 0.00 0.00 4.01
1706 1832 2.734723 TCGCTGTCTCGTGCAAGC 60.735 61.111 0.00 0.00 0.00 4.01
1707 1833 3.037833 CGCTGTCTCGTGCAAGCA 61.038 61.111 6.62 0.00 0.00 3.91
1709 1835 2.246739 GCTGTCTCGTGCAAGCACA 61.247 57.895 23.23 10.66 46.47 4.57
1710 1836 1.858041 CTGTCTCGTGCAAGCACAG 59.142 57.895 23.23 18.23 46.47 3.66
1711 1837 2.167808 CTGTCTCGTGCAAGCACAGC 62.168 60.000 23.23 14.85 46.47 4.40
1712 1838 2.108771 TCTCGTGCAAGCACAGCA 59.891 55.556 23.23 7.08 46.47 4.41
1759 1894 0.106967 GGGATTGGGAGTGAAGGAGC 60.107 60.000 0.00 0.00 0.00 4.70
1760 1895 0.915364 GGATTGGGAGTGAAGGAGCT 59.085 55.000 0.00 0.00 0.00 4.09
1761 1896 1.407989 GGATTGGGAGTGAAGGAGCTG 60.408 57.143 0.00 0.00 0.00 4.24
1773 1916 2.202987 GAGCTGGAGGTCATGGCG 60.203 66.667 0.00 0.00 41.81 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.828299 ACAGGACATTGTTTCTTCGAAAA 57.172 34.783 0.00 0.00 0.00 2.29
3 4 5.209818 ACTACAGGACATTGTTTCTTCGA 57.790 39.130 0.00 0.00 32.56 3.71
5 6 6.861065 TCAACTACAGGACATTGTTTCTTC 57.139 37.500 0.00 0.00 32.56 2.87
6 7 7.040409 GGATTCAACTACAGGACATTGTTTCTT 60.040 37.037 0.00 0.00 32.56 2.52
7 8 6.431234 GGATTCAACTACAGGACATTGTTTCT 59.569 38.462 0.00 0.00 32.56 2.52
8 9 6.206634 TGGATTCAACTACAGGACATTGTTTC 59.793 38.462 0.00 0.00 32.56 2.78
9 10 6.068010 TGGATTCAACTACAGGACATTGTTT 58.932 36.000 0.00 0.00 32.56 2.83
10 11 5.630121 TGGATTCAACTACAGGACATTGTT 58.370 37.500 0.00 0.00 32.56 2.83
11 12 5.241403 TGGATTCAACTACAGGACATTGT 57.759 39.130 0.00 0.00 35.09 2.71
12 13 5.882000 TGATGGATTCAACTACAGGACATTG 59.118 40.000 0.00 0.00 0.00 2.82
13 14 5.882557 GTGATGGATTCAACTACAGGACATT 59.117 40.000 0.00 0.00 35.70 2.71
14 15 5.431765 GTGATGGATTCAACTACAGGACAT 58.568 41.667 0.00 0.00 35.70 3.06
15 16 4.323485 GGTGATGGATTCAACTACAGGACA 60.323 45.833 0.00 0.00 39.12 4.02
16 17 4.192317 GGTGATGGATTCAACTACAGGAC 58.808 47.826 0.00 0.00 39.12 3.85
17 18 3.199946 GGGTGATGGATTCAACTACAGGA 59.800 47.826 0.00 0.00 42.11 3.86
18 19 3.200825 AGGGTGATGGATTCAACTACAGG 59.799 47.826 0.00 0.00 42.11 4.00
19 20 4.446371 GAGGGTGATGGATTCAACTACAG 58.554 47.826 0.00 0.00 42.11 2.74
20 21 3.199946 GGAGGGTGATGGATTCAACTACA 59.800 47.826 0.00 0.00 42.11 2.74
21 22 3.433740 GGGAGGGTGATGGATTCAACTAC 60.434 52.174 0.00 0.00 42.11 2.73
22 23 2.777692 GGGAGGGTGATGGATTCAACTA 59.222 50.000 0.00 0.00 42.11 2.24
23 24 1.566231 GGGAGGGTGATGGATTCAACT 59.434 52.381 0.00 0.00 42.11 3.16
24 25 1.566231 AGGGAGGGTGATGGATTCAAC 59.434 52.381 0.00 0.00 41.69 3.18
25 26 1.846439 GAGGGAGGGTGATGGATTCAA 59.154 52.381 0.00 0.00 35.70 2.69
26 27 1.274358 TGAGGGAGGGTGATGGATTCA 60.274 52.381 0.00 0.00 0.00 2.57
27 28 1.141858 GTGAGGGAGGGTGATGGATTC 59.858 57.143 0.00 0.00 0.00 2.52
28 29 1.216990 GTGAGGGAGGGTGATGGATT 58.783 55.000 0.00 0.00 0.00 3.01
29 30 0.695803 GGTGAGGGAGGGTGATGGAT 60.696 60.000 0.00 0.00 0.00 3.41
30 31 1.306997 GGTGAGGGAGGGTGATGGA 60.307 63.158 0.00 0.00 0.00 3.41
31 32 0.916358 AAGGTGAGGGAGGGTGATGG 60.916 60.000 0.00 0.00 0.00 3.51
32 33 1.765314 CTAAGGTGAGGGAGGGTGATG 59.235 57.143 0.00 0.00 0.00 3.07
33 34 1.344496 CCTAAGGTGAGGGAGGGTGAT 60.344 57.143 0.00 0.00 32.39 3.06
34 35 0.042731 CCTAAGGTGAGGGAGGGTGA 59.957 60.000 0.00 0.00 32.39 4.02
35 36 1.627297 GCCTAAGGTGAGGGAGGGTG 61.627 65.000 0.00 0.00 37.06 4.61
36 37 1.307084 GCCTAAGGTGAGGGAGGGT 60.307 63.158 0.00 0.00 37.06 4.34
37 38 2.435693 CGCCTAAGGTGAGGGAGGG 61.436 68.421 0.00 0.00 37.06 4.30
38 39 0.760945 ATCGCCTAAGGTGAGGGAGG 60.761 60.000 0.00 0.00 45.82 4.30
39 40 0.676736 GATCGCCTAAGGTGAGGGAG 59.323 60.000 0.00 0.00 45.82 4.30
40 41 1.107538 CGATCGCCTAAGGTGAGGGA 61.108 60.000 0.26 0.00 45.82 4.20
41 42 1.107538 TCGATCGCCTAAGGTGAGGG 61.108 60.000 11.09 0.00 45.82 4.30
42 43 0.962489 ATCGATCGCCTAAGGTGAGG 59.038 55.000 11.09 0.00 45.82 3.86
43 44 2.802787 AATCGATCGCCTAAGGTGAG 57.197 50.000 11.09 0.00 45.82 3.51
44 45 2.543031 CGAAATCGATCGCCTAAGGTGA 60.543 50.000 11.09 0.00 46.70 4.02
45 46 1.787155 CGAAATCGATCGCCTAAGGTG 59.213 52.381 11.09 0.00 43.02 4.00
46 47 1.269621 CCGAAATCGATCGCCTAAGGT 60.270 52.381 11.09 0.00 43.02 3.50
47 48 1.269621 ACCGAAATCGATCGCCTAAGG 60.270 52.381 11.09 13.04 43.02 2.69
48 49 1.787155 CACCGAAATCGATCGCCTAAG 59.213 52.381 11.09 1.49 43.02 2.18
49 50 1.847818 CACCGAAATCGATCGCCTAA 58.152 50.000 11.09 0.00 43.02 2.69
50 51 0.596600 GCACCGAAATCGATCGCCTA 60.597 55.000 11.09 0.00 43.02 3.93
51 52 1.883084 GCACCGAAATCGATCGCCT 60.883 57.895 11.09 0.00 43.02 5.52
52 53 1.429148 AAGCACCGAAATCGATCGCC 61.429 55.000 11.09 0.00 43.02 5.54
53 54 1.071436 GTAAGCACCGAAATCGATCGC 60.071 52.381 11.09 3.92 43.02 4.58
54 55 2.190161 TGTAAGCACCGAAATCGATCG 58.810 47.619 9.36 9.36 43.02 3.69
55 56 2.540101 CCTGTAAGCACCGAAATCGATC 59.460 50.000 4.04 0.00 43.02 3.69
56 57 2.550978 CCTGTAAGCACCGAAATCGAT 58.449 47.619 4.04 0.00 43.02 3.59
57 58 2.004583 CCTGTAAGCACCGAAATCGA 57.995 50.000 4.04 0.00 43.02 3.59
58 59 0.373716 GCCTGTAAGCACCGAAATCG 59.626 55.000 0.00 0.00 39.44 3.34
59 60 0.733150 GGCCTGTAAGCACCGAAATC 59.267 55.000 0.00 0.00 0.00 2.17
60 61 2.868253 GGCCTGTAAGCACCGAAAT 58.132 52.632 0.00 0.00 0.00 2.17
61 62 4.390048 GGCCTGTAAGCACCGAAA 57.610 55.556 0.00 0.00 0.00 3.46
65 66 4.796495 CCCCGGCCTGTAAGCACC 62.796 72.222 0.00 0.00 0.00 5.01
66 67 4.029809 ACCCCGGCCTGTAAGCAC 62.030 66.667 0.00 0.00 0.00 4.40
67 68 4.028490 CACCCCGGCCTGTAAGCA 62.028 66.667 0.00 0.00 0.00 3.91
68 69 3.712907 TCACCCCGGCCTGTAAGC 61.713 66.667 0.00 0.00 0.00 3.09
69 70 0.974010 TAGTCACCCCGGCCTGTAAG 60.974 60.000 0.00 0.00 0.00 2.34
70 71 0.325860 ATAGTCACCCCGGCCTGTAA 60.326 55.000 0.00 0.00 0.00 2.41
71 72 1.046472 CATAGTCACCCCGGCCTGTA 61.046 60.000 0.00 0.00 0.00 2.74
72 73 2.040606 ATAGTCACCCCGGCCTGT 59.959 61.111 0.00 0.00 0.00 4.00
73 74 2.505982 CATAGTCACCCCGGCCTG 59.494 66.667 0.00 0.00 0.00 4.85
74 75 2.621672 ATCCATAGTCACCCCGGCCT 62.622 60.000 0.00 0.00 0.00 5.19
75 76 2.113243 GATCCATAGTCACCCCGGCC 62.113 65.000 0.00 0.00 0.00 6.13
76 77 1.122019 AGATCCATAGTCACCCCGGC 61.122 60.000 0.00 0.00 0.00 6.13
77 78 1.424638 AAGATCCATAGTCACCCCGG 58.575 55.000 0.00 0.00 0.00 5.73
78 79 2.170607 ACAAAGATCCATAGTCACCCCG 59.829 50.000 0.00 0.00 0.00 5.73
79 80 3.545703 CACAAAGATCCATAGTCACCCC 58.454 50.000 0.00 0.00 0.00 4.95
80 81 2.945668 GCACAAAGATCCATAGTCACCC 59.054 50.000 0.00 0.00 0.00 4.61
81 82 2.945668 GGCACAAAGATCCATAGTCACC 59.054 50.000 0.00 0.00 0.00 4.02
82 83 3.624861 CAGGCACAAAGATCCATAGTCAC 59.375 47.826 0.00 0.00 0.00 3.67
83 84 3.264193 ACAGGCACAAAGATCCATAGTCA 59.736 43.478 0.00 0.00 0.00 3.41
84 85 3.624861 CACAGGCACAAAGATCCATAGTC 59.375 47.826 0.00 0.00 0.00 2.59
85 86 3.264193 TCACAGGCACAAAGATCCATAGT 59.736 43.478 0.00 0.00 0.00 2.12
86 87 3.875727 CTCACAGGCACAAAGATCCATAG 59.124 47.826 0.00 0.00 0.00 2.23
87 88 3.370846 CCTCACAGGCACAAAGATCCATA 60.371 47.826 0.00 0.00 0.00 2.74
88 89 2.619849 CCTCACAGGCACAAAGATCCAT 60.620 50.000 0.00 0.00 0.00 3.41
89 90 1.271543 CCTCACAGGCACAAAGATCCA 60.272 52.381 0.00 0.00 0.00 3.41
90 91 1.003580 TCCTCACAGGCACAAAGATCC 59.996 52.381 0.00 0.00 34.61 3.36
91 92 2.027745 TCTCCTCACAGGCACAAAGATC 60.028 50.000 0.00 0.00 34.61 2.75
92 93 1.980765 TCTCCTCACAGGCACAAAGAT 59.019 47.619 0.00 0.00 34.61 2.40
93 94 1.423584 TCTCCTCACAGGCACAAAGA 58.576 50.000 0.00 0.00 34.61 2.52
94 95 2.027377 AGATCTCCTCACAGGCACAAAG 60.027 50.000 0.00 0.00 34.61 2.77
95 96 1.980765 AGATCTCCTCACAGGCACAAA 59.019 47.619 0.00 0.00 34.61 2.83
96 97 1.277273 CAGATCTCCTCACAGGCACAA 59.723 52.381 0.00 0.00 34.61 3.33
97 98 0.900421 CAGATCTCCTCACAGGCACA 59.100 55.000 0.00 0.00 34.61 4.57
98 99 0.177604 CCAGATCTCCTCACAGGCAC 59.822 60.000 0.00 0.00 34.61 5.01
99 100 0.252421 ACCAGATCTCCTCACAGGCA 60.252 55.000 0.00 0.00 34.61 4.75
100 101 0.463620 GACCAGATCTCCTCACAGGC 59.536 60.000 0.00 0.00 34.61 4.85
101 102 2.157640 AGACCAGATCTCCTCACAGG 57.842 55.000 0.00 0.00 36.46 4.00
102 103 3.221771 CCTAGACCAGATCTCCTCACAG 58.778 54.545 0.00 0.00 39.04 3.66
103 104 2.583101 ACCTAGACCAGATCTCCTCACA 59.417 50.000 0.00 0.00 39.04 3.58
104 105 3.306472 ACCTAGACCAGATCTCCTCAC 57.694 52.381 0.00 0.00 39.04 3.51
105 106 3.011821 ACAACCTAGACCAGATCTCCTCA 59.988 47.826 0.00 0.00 39.04 3.86
106 107 3.637769 ACAACCTAGACCAGATCTCCTC 58.362 50.000 0.00 0.00 39.04 3.71
107 108 3.767309 ACAACCTAGACCAGATCTCCT 57.233 47.619 0.00 0.00 39.04 3.69
108 109 4.202172 GCTAACAACCTAGACCAGATCTCC 60.202 50.000 0.00 0.00 39.04 3.71
109 110 4.402793 TGCTAACAACCTAGACCAGATCTC 59.597 45.833 0.00 0.00 39.04 2.75
110 111 4.353777 TGCTAACAACCTAGACCAGATCT 58.646 43.478 0.00 0.00 41.95 2.75
111 112 4.160626 ACTGCTAACAACCTAGACCAGATC 59.839 45.833 0.00 0.00 0.00 2.75
112 113 4.097418 ACTGCTAACAACCTAGACCAGAT 58.903 43.478 0.00 0.00 0.00 2.90
113 114 3.507411 ACTGCTAACAACCTAGACCAGA 58.493 45.455 0.00 0.00 0.00 3.86
114 115 3.963428 ACTGCTAACAACCTAGACCAG 57.037 47.619 0.00 0.00 0.00 4.00
115 116 3.244422 CCAACTGCTAACAACCTAGACCA 60.244 47.826 0.00 0.00 0.00 4.02
116 117 3.244457 ACCAACTGCTAACAACCTAGACC 60.244 47.826 0.00 0.00 0.00 3.85
117 118 3.746492 CACCAACTGCTAACAACCTAGAC 59.254 47.826 0.00 0.00 0.00 2.59
118 119 3.389983 ACACCAACTGCTAACAACCTAGA 59.610 43.478 0.00 0.00 0.00 2.43
119 120 3.740115 ACACCAACTGCTAACAACCTAG 58.260 45.455 0.00 0.00 0.00 3.02
120 121 3.495453 GGACACCAACTGCTAACAACCTA 60.495 47.826 0.00 0.00 0.00 3.08
121 122 2.572290 GACACCAACTGCTAACAACCT 58.428 47.619 0.00 0.00 0.00 3.50
122 123 1.607148 GGACACCAACTGCTAACAACC 59.393 52.381 0.00 0.00 0.00 3.77
123 124 2.548480 GAGGACACCAACTGCTAACAAC 59.452 50.000 0.00 0.00 0.00 3.32
124 125 2.171659 TGAGGACACCAACTGCTAACAA 59.828 45.455 0.00 0.00 0.00 2.83
125 126 1.765904 TGAGGACACCAACTGCTAACA 59.234 47.619 0.00 0.00 0.00 2.41
126 127 2.543777 TGAGGACACCAACTGCTAAC 57.456 50.000 0.00 0.00 0.00 2.34
127 128 2.371841 ACATGAGGACACCAACTGCTAA 59.628 45.455 0.00 0.00 0.00 3.09
128 129 1.977854 ACATGAGGACACCAACTGCTA 59.022 47.619 0.00 0.00 0.00 3.49
129 130 0.767375 ACATGAGGACACCAACTGCT 59.233 50.000 0.00 0.00 0.00 4.24
130 131 2.289694 ACTACATGAGGACACCAACTGC 60.290 50.000 0.00 0.00 0.00 4.40
131 132 3.685139 ACTACATGAGGACACCAACTG 57.315 47.619 0.00 0.00 0.00 3.16
132 133 3.244561 CCAACTACATGAGGACACCAACT 60.245 47.826 0.00 0.00 0.00 3.16
133 134 3.074412 CCAACTACATGAGGACACCAAC 58.926 50.000 0.00 0.00 0.00 3.77
134 135 2.552155 GCCAACTACATGAGGACACCAA 60.552 50.000 0.00 0.00 0.00 3.67
135 136 1.003118 GCCAACTACATGAGGACACCA 59.997 52.381 0.00 0.00 0.00 4.17
136 137 1.679032 GGCCAACTACATGAGGACACC 60.679 57.143 0.00 0.00 0.00 4.16
137 138 1.679032 GGGCCAACTACATGAGGACAC 60.679 57.143 4.39 0.00 0.00 3.67
138 139 0.618458 GGGCCAACTACATGAGGACA 59.382 55.000 4.39 0.00 0.00 4.02
139 140 0.462047 CGGGCCAACTACATGAGGAC 60.462 60.000 4.39 0.00 0.00 3.85
140 141 1.622607 CCGGGCCAACTACATGAGGA 61.623 60.000 4.39 0.00 0.00 3.71
141 142 1.153168 CCGGGCCAACTACATGAGG 60.153 63.158 4.39 0.00 0.00 3.86
142 143 1.153168 CCCGGGCCAACTACATGAG 60.153 63.158 8.08 0.00 0.00 2.90
143 144 2.675242 CCCCGGGCCAACTACATGA 61.675 63.158 17.73 0.00 0.00 3.07
144 145 2.124320 CCCCGGGCCAACTACATG 60.124 66.667 17.73 0.00 0.00 3.21
145 146 2.612746 ACCCCGGGCCAACTACAT 60.613 61.111 17.73 0.00 0.00 2.29
146 147 3.642503 CACCCCGGGCCAACTACA 61.643 66.667 17.73 0.00 0.00 2.74
147 148 3.643554 ACACCCCGGGCCAACTAC 61.644 66.667 17.73 0.00 0.00 2.73
148 149 3.642503 CACACCCCGGGCCAACTA 61.643 66.667 17.73 0.00 0.00 2.24
150 151 4.589675 TTCACACCCCGGGCCAAC 62.590 66.667 17.73 0.00 0.00 3.77
151 152 4.278513 CTTCACACCCCGGGCCAA 62.279 66.667 17.73 1.01 0.00 4.52
153 154 3.728373 ATCTTCACACCCCGGGCC 61.728 66.667 17.73 0.00 0.00 5.80
154 155 2.438434 CATCTTCACACCCCGGGC 60.438 66.667 17.73 0.00 0.00 6.13
155 156 0.960364 CAACATCTTCACACCCCGGG 60.960 60.000 15.80 15.80 0.00 5.73
156 157 0.960364 CCAACATCTTCACACCCCGG 60.960 60.000 0.00 0.00 0.00 5.73
157 158 0.250727 ACCAACATCTTCACACCCCG 60.251 55.000 0.00 0.00 0.00 5.73
158 159 1.247567 CACCAACATCTTCACACCCC 58.752 55.000 0.00 0.00 0.00 4.95
159 160 0.598065 GCACCAACATCTTCACACCC 59.402 55.000 0.00 0.00 0.00 4.61
160 161 1.317613 TGCACCAACATCTTCACACC 58.682 50.000 0.00 0.00 0.00 4.16
161 162 2.553602 TGATGCACCAACATCTTCACAC 59.446 45.455 6.13 0.00 45.51 3.82
162 163 2.815503 CTGATGCACCAACATCTTCACA 59.184 45.455 6.13 0.00 45.51 3.58
163 164 3.076621 TCTGATGCACCAACATCTTCAC 58.923 45.455 6.13 0.00 45.51 3.18
164 165 3.421919 TCTGATGCACCAACATCTTCA 57.578 42.857 6.13 0.00 45.51 3.02
165 166 4.978083 ATTCTGATGCACCAACATCTTC 57.022 40.909 6.13 0.00 45.51 2.87
166 167 5.948162 ACTTATTCTGATGCACCAACATCTT 59.052 36.000 6.13 0.00 45.51 2.40
167 168 5.356190 CACTTATTCTGATGCACCAACATCT 59.644 40.000 6.13 0.00 45.51 2.90
168 169 5.575957 CACTTATTCTGATGCACCAACATC 58.424 41.667 0.00 0.00 45.51 3.06
169 170 4.142315 GCACTTATTCTGATGCACCAACAT 60.142 41.667 0.00 0.00 38.00 2.71
170 171 3.191162 GCACTTATTCTGATGCACCAACA 59.809 43.478 0.00 0.00 38.00 3.33
171 172 3.428045 GGCACTTATTCTGATGCACCAAC 60.428 47.826 0.00 0.00 39.92 3.77
172 173 2.754552 GGCACTTATTCTGATGCACCAA 59.245 45.455 0.00 0.00 39.92 3.67
173 174 2.025981 AGGCACTTATTCTGATGCACCA 60.026 45.455 0.00 0.00 39.92 4.17
174 175 2.615912 GAGGCACTTATTCTGATGCACC 59.384 50.000 0.00 0.00 41.55 5.01
175 176 2.615912 GGAGGCACTTATTCTGATGCAC 59.384 50.000 0.00 0.00 41.55 4.57
176 177 2.507058 AGGAGGCACTTATTCTGATGCA 59.493 45.455 0.00 0.00 41.55 3.96
177 178 3.205784 AGGAGGCACTTATTCTGATGC 57.794 47.619 0.00 0.00 41.55 3.91
178 179 4.133078 GGAAGGAGGCACTTATTCTGATG 58.867 47.826 0.00 0.00 41.55 3.07
179 180 4.043596 AGGAAGGAGGCACTTATTCTGAT 58.956 43.478 0.00 0.00 41.55 2.90
180 181 3.452627 GAGGAAGGAGGCACTTATTCTGA 59.547 47.826 0.00 0.00 41.55 3.27
181 182 3.432890 GGAGGAAGGAGGCACTTATTCTG 60.433 52.174 0.00 0.00 41.55 3.02
182 183 2.774809 GGAGGAAGGAGGCACTTATTCT 59.225 50.000 0.00 0.00 41.55 2.40
183 184 2.505819 TGGAGGAAGGAGGCACTTATTC 59.494 50.000 0.00 0.00 41.55 1.75
184 185 2.562296 TGGAGGAAGGAGGCACTTATT 58.438 47.619 0.00 0.00 41.55 1.40
185 186 2.270434 TGGAGGAAGGAGGCACTTAT 57.730 50.000 0.00 0.00 41.55 1.73
186 187 2.239654 CAATGGAGGAAGGAGGCACTTA 59.760 50.000 0.00 0.00 41.55 2.24
187 188 1.005215 CAATGGAGGAAGGAGGCACTT 59.995 52.381 0.00 0.00 41.55 3.16
189 190 1.034292 GCAATGGAGGAAGGAGGCAC 61.034 60.000 0.00 0.00 0.00 5.01
190 191 1.304282 GCAATGGAGGAAGGAGGCA 59.696 57.895 0.00 0.00 0.00 4.75
191 192 1.034292 GTGCAATGGAGGAAGGAGGC 61.034 60.000 0.00 0.00 0.00 4.70
192 193 0.394899 GGTGCAATGGAGGAAGGAGG 60.395 60.000 0.00 0.00 0.00 4.30
193 194 0.329261 TGGTGCAATGGAGGAAGGAG 59.671 55.000 0.00 0.00 0.00 3.69
194 195 0.329261 CTGGTGCAATGGAGGAAGGA 59.671 55.000 0.00 0.00 0.00 3.36
195 196 1.318158 GCTGGTGCAATGGAGGAAGG 61.318 60.000 0.00 0.00 39.41 3.46
196 197 2.187073 GCTGGTGCAATGGAGGAAG 58.813 57.895 0.00 0.00 39.41 3.46
197 198 4.421365 GCTGGTGCAATGGAGGAA 57.579 55.556 0.00 0.00 39.41 3.36
211 212 1.008538 GACGCCAAAACCAGTGCTG 60.009 57.895 0.00 0.00 0.00 4.41
212 213 2.542907 CGACGCCAAAACCAGTGCT 61.543 57.895 0.00 0.00 0.00 4.40
213 214 2.051345 CGACGCCAAAACCAGTGC 60.051 61.111 0.00 0.00 0.00 4.40
214 215 1.278637 GACGACGCCAAAACCAGTG 59.721 57.895 0.00 0.00 0.00 3.66
215 216 2.241880 CGACGACGCCAAAACCAGT 61.242 57.895 0.00 0.00 0.00 4.00
216 217 2.549282 CGACGACGCCAAAACCAG 59.451 61.111 0.00 0.00 0.00 4.00
217 218 2.968156 CCGACGACGCCAAAACCA 60.968 61.111 0.64 0.00 38.29 3.67
218 219 3.719144 CCCGACGACGCCAAAACC 61.719 66.667 0.64 0.00 38.29 3.27
219 220 2.662527 TCCCGACGACGCCAAAAC 60.663 61.111 0.64 0.00 38.29 2.43
220 221 2.356553 CTCCCGACGACGCCAAAA 60.357 61.111 0.64 0.00 38.29 2.44
221 222 4.367023 CCTCCCGACGACGCCAAA 62.367 66.667 0.64 0.00 38.29 3.28
233 234 2.689771 TAAAGGACCGGGCCTCCC 60.690 66.667 34.46 10.31 37.26 4.30
234 235 2.743179 CCTAAAGGACCGGGCCTCC 61.743 68.421 34.46 16.54 37.26 4.30
235 236 1.969200 GACCTAAAGGACCGGGCCTC 61.969 65.000 34.46 13.36 37.26 4.70
236 237 1.993948 GACCTAAAGGACCGGGCCT 60.994 63.158 28.33 28.33 40.93 5.19
237 238 1.632965 ATGACCTAAAGGACCGGGCC 61.633 60.000 22.85 22.85 38.94 5.80
238 239 0.463833 CATGACCTAAAGGACCGGGC 60.464 60.000 6.32 0.21 38.94 6.13
239 240 0.463833 GCATGACCTAAAGGACCGGG 60.464 60.000 6.32 0.00 38.94 5.73
240 241 0.810031 CGCATGACCTAAAGGACCGG 60.810 60.000 0.00 0.00 38.94 5.28
241 242 0.174845 TCGCATGACCTAAAGGACCG 59.825 55.000 2.23 0.00 38.94 4.79
242 243 1.207329 ACTCGCATGACCTAAAGGACC 59.793 52.381 2.23 0.00 38.94 4.46
243 244 2.674796 ACTCGCATGACCTAAAGGAC 57.325 50.000 2.23 0.00 38.94 3.85
244 245 4.811969 TTTACTCGCATGACCTAAAGGA 57.188 40.909 2.23 0.00 38.94 3.36
245 246 6.018180 GGTAATTTACTCGCATGACCTAAAGG 60.018 42.308 0.00 0.00 42.17 3.11
246 247 6.761714 AGGTAATTTACTCGCATGACCTAAAG 59.238 38.462 0.00 0.00 34.30 1.85
247 248 6.646267 AGGTAATTTACTCGCATGACCTAAA 58.354 36.000 0.00 0.00 34.30 1.85
248 249 6.127281 TGAGGTAATTTACTCGCATGACCTAA 60.127 38.462 0.00 0.00 36.20 2.69
249 250 5.361571 TGAGGTAATTTACTCGCATGACCTA 59.638 40.000 0.00 0.00 36.20 3.08
250 251 4.161565 TGAGGTAATTTACTCGCATGACCT 59.838 41.667 0.00 0.00 38.76 3.85
251 252 4.270325 GTGAGGTAATTTACTCGCATGACC 59.730 45.833 14.23 0.00 42.29 4.02
252 253 4.270325 GGTGAGGTAATTTACTCGCATGAC 59.730 45.833 18.42 6.51 43.98 3.06
253 254 4.439057 GGTGAGGTAATTTACTCGCATGA 58.561 43.478 18.42 0.00 43.98 3.07
254 255 3.245284 CGGTGAGGTAATTTACTCGCATG 59.755 47.826 18.42 10.27 43.98 4.06
255 256 3.454375 CGGTGAGGTAATTTACTCGCAT 58.546 45.455 18.42 0.00 43.98 4.73
256 257 2.417651 CCGGTGAGGTAATTTACTCGCA 60.418 50.000 18.42 2.82 43.98 5.10
257 258 2.159198 TCCGGTGAGGTAATTTACTCGC 60.159 50.000 0.00 11.89 42.06 5.03
258 259 3.788333 TCCGGTGAGGTAATTTACTCG 57.212 47.619 0.00 4.07 41.99 4.18
259 260 5.334724 TCTTCCGGTGAGGTAATTTACTC 57.665 43.478 0.00 2.97 41.99 2.59
260 261 5.750352 TTCTTCCGGTGAGGTAATTTACT 57.250 39.130 0.00 0.00 41.99 2.24
261 262 6.806388 TTTTCTTCCGGTGAGGTAATTTAC 57.194 37.500 0.00 0.00 41.99 2.01
284 285 6.011481 TCGGTGGTAAGTTATTCCCATTTTT 58.989 36.000 0.00 0.00 0.00 1.94
285 286 5.416639 GTCGGTGGTAAGTTATTCCCATTTT 59.583 40.000 0.00 0.00 0.00 1.82
286 287 4.945543 GTCGGTGGTAAGTTATTCCCATTT 59.054 41.667 0.00 0.00 0.00 2.32
287 288 4.520179 GTCGGTGGTAAGTTATTCCCATT 58.480 43.478 0.00 0.00 0.00 3.16
288 289 3.431207 CGTCGGTGGTAAGTTATTCCCAT 60.431 47.826 0.00 0.00 0.00 4.00
289 290 2.094078 CGTCGGTGGTAAGTTATTCCCA 60.094 50.000 0.00 0.00 0.00 4.37
290 291 2.166254 TCGTCGGTGGTAAGTTATTCCC 59.834 50.000 0.00 0.00 0.00 3.97
291 292 3.508744 TCGTCGGTGGTAAGTTATTCC 57.491 47.619 0.00 0.00 0.00 3.01
292 293 3.244579 GCATCGTCGGTGGTAAGTTATTC 59.755 47.826 7.76 0.00 0.00 1.75
293 294 3.118884 AGCATCGTCGGTGGTAAGTTATT 60.119 43.478 8.75 0.00 0.00 1.40
294 295 2.429610 AGCATCGTCGGTGGTAAGTTAT 59.570 45.455 8.75 0.00 0.00 1.89
295 296 1.820519 AGCATCGTCGGTGGTAAGTTA 59.179 47.619 8.75 0.00 0.00 2.24
296 297 0.606604 AGCATCGTCGGTGGTAAGTT 59.393 50.000 8.75 0.00 0.00 2.66
297 298 0.606604 AAGCATCGTCGGTGGTAAGT 59.393 50.000 11.13 0.00 0.00 2.24
298 299 1.659098 GAAAGCATCGTCGGTGGTAAG 59.341 52.381 11.13 0.00 0.00 2.34
299 300 1.001068 TGAAAGCATCGTCGGTGGTAA 59.999 47.619 11.13 0.00 0.00 2.85
300 301 0.604073 TGAAAGCATCGTCGGTGGTA 59.396 50.000 11.13 0.00 0.00 3.25
301 302 0.949105 GTGAAAGCATCGTCGGTGGT 60.949 55.000 3.93 3.93 0.00 4.16
302 303 0.948623 TGTGAAAGCATCGTCGGTGG 60.949 55.000 7.76 0.00 0.00 4.61
303 304 1.061131 GATGTGAAAGCATCGTCGGTG 59.939 52.381 0.00 0.00 36.34 4.94
304 305 1.337728 TGATGTGAAAGCATCGTCGGT 60.338 47.619 0.00 0.00 45.98 4.69
305 306 1.325640 CTGATGTGAAAGCATCGTCGG 59.674 52.381 0.00 0.00 45.98 4.79
306 307 1.995484 ACTGATGTGAAAGCATCGTCG 59.005 47.619 0.00 0.00 45.98 5.12
307 308 3.433274 TGAACTGATGTGAAAGCATCGTC 59.567 43.478 0.00 0.00 45.98 4.20
308 309 3.402110 TGAACTGATGTGAAAGCATCGT 58.598 40.909 0.00 0.00 45.98 3.73
309 310 4.611310 ATGAACTGATGTGAAAGCATCG 57.389 40.909 0.00 0.00 45.98 3.84
310 311 5.913514 GCATATGAACTGATGTGAAAGCATC 59.086 40.000 6.97 0.00 43.97 3.91
311 312 5.221185 GGCATATGAACTGATGTGAAAGCAT 60.221 40.000 6.97 0.00 0.00 3.79
312 313 4.096833 GGCATATGAACTGATGTGAAAGCA 59.903 41.667 6.97 0.00 0.00 3.91
313 314 4.604976 GGCATATGAACTGATGTGAAAGC 58.395 43.478 6.97 0.00 0.00 3.51
314 315 4.787563 GCGGCATATGAACTGATGTGAAAG 60.788 45.833 6.97 0.00 0.00 2.62
315 316 3.065233 GCGGCATATGAACTGATGTGAAA 59.935 43.478 6.97 0.00 0.00 2.69
316 317 2.613595 GCGGCATATGAACTGATGTGAA 59.386 45.455 6.97 0.00 0.00 3.18
317 318 2.212652 GCGGCATATGAACTGATGTGA 58.787 47.619 6.97 0.00 0.00 3.58
318 319 1.265095 GGCGGCATATGAACTGATGTG 59.735 52.381 6.97 0.00 0.00 3.21
319 320 1.597742 GGCGGCATATGAACTGATGT 58.402 50.000 6.97 0.00 0.00 3.06
320 321 0.514255 CGGCGGCATATGAACTGATG 59.486 55.000 10.53 0.00 0.00 3.07
321 322 0.603707 CCGGCGGCATATGAACTGAT 60.604 55.000 15.42 0.00 0.00 2.90
322 323 1.227527 CCGGCGGCATATGAACTGA 60.228 57.895 15.42 0.00 0.00 3.41
323 324 1.523711 ACCGGCGGCATATGAACTG 60.524 57.895 28.71 0.00 0.00 3.16
324 325 1.523711 CACCGGCGGCATATGAACT 60.524 57.895 28.71 0.00 0.00 3.01
325 326 2.542907 CCACCGGCGGCATATGAAC 61.543 63.158 28.71 0.00 0.00 3.18
326 327 2.203139 CCACCGGCGGCATATGAA 60.203 61.111 28.71 0.00 0.00 2.57
327 328 3.454587 GACCACCGGCGGCATATGA 62.455 63.158 28.71 0.00 0.00 2.15
328 329 2.972505 GACCACCGGCGGCATATG 60.973 66.667 28.71 16.91 0.00 1.78
329 330 3.161450 AGACCACCGGCGGCATAT 61.161 61.111 28.71 9.37 0.00 1.78
330 331 3.845259 GAGACCACCGGCGGCATA 61.845 66.667 28.71 0.00 0.00 3.14
340 341 3.009143 AGGGGTGTTATTGAAGAGACCAC 59.991 47.826 0.00 0.00 0.00 4.16
345 346 4.641989 CCATTGAGGGGTGTTATTGAAGAG 59.358 45.833 0.00 0.00 0.00 2.85
359 360 2.764314 CCGAAAGCGCCATTGAGGG 61.764 63.158 2.29 0.00 38.09 4.30
383 384 1.073706 AGGAGACCCAACCACACCT 60.074 57.895 0.00 0.00 33.88 4.00
384 385 1.375326 GAGGAGACCCAACCACACC 59.625 63.158 0.00 0.00 33.88 4.16
400 401 1.130561 GAAAATTGAAGGTCGGGCGAG 59.869 52.381 0.00 0.00 0.00 5.03
403 404 2.820197 AGAAGAAAATTGAAGGTCGGGC 59.180 45.455 0.00 0.00 0.00 6.13
404 405 3.440522 GGAGAAGAAAATTGAAGGTCGGG 59.559 47.826 0.00 0.00 0.00 5.14
408 409 3.073946 TCCCGGAGAAGAAAATTGAAGGT 59.926 43.478 0.73 0.00 0.00 3.50
409 410 3.686016 TCCCGGAGAAGAAAATTGAAGG 58.314 45.455 0.73 0.00 0.00 3.46
411 412 3.938963 CGATCCCGGAGAAGAAAATTGAA 59.061 43.478 0.73 0.00 0.00 2.69
415 416 5.546621 TTATCGATCCCGGAGAAGAAAAT 57.453 39.130 0.73 0.00 36.24 1.82
417 418 5.539048 GAATTATCGATCCCGGAGAAGAAA 58.461 41.667 0.73 2.16 36.24 2.52
457 458 0.461548 TTGCTAGGAGGCATCGACAG 59.538 55.000 0.00 0.00 42.09 3.51
458 459 0.175760 GTTGCTAGGAGGCATCGACA 59.824 55.000 0.00 0.00 42.09 4.35
460 461 1.123077 ATGTTGCTAGGAGGCATCGA 58.877 50.000 0.00 0.00 42.09 3.59
461 462 1.869767 GAATGTTGCTAGGAGGCATCG 59.130 52.381 4.40 0.00 42.09 3.84
463 464 1.486310 TCGAATGTTGCTAGGAGGCAT 59.514 47.619 0.00 0.00 42.09 4.40
464 465 0.901827 TCGAATGTTGCTAGGAGGCA 59.098 50.000 0.00 0.00 40.74 4.75
468 469 4.160439 AGAAGACATCGAATGTTGCTAGGA 59.840 41.667 0.00 0.00 45.03 2.94
471 472 4.105486 CGAGAAGACATCGAATGTTGCTA 58.895 43.478 0.00 0.00 45.03 3.49
473 474 2.668457 ACGAGAAGACATCGAATGTTGC 59.332 45.455 1.94 0.00 45.03 4.17
481 482 2.568696 ACATGGACGAGAAGACATCG 57.431 50.000 0.00 0.00 45.54 3.84
486 487 0.976641 AGCCAACATGGACGAGAAGA 59.023 50.000 0.00 0.00 40.96 2.87
490 491 1.811266 CGGAGCCAACATGGACGAG 60.811 63.158 0.00 0.00 40.96 4.18
492 493 2.819595 CCGGAGCCAACATGGACG 60.820 66.667 0.00 1.50 40.96 4.79
496 497 2.173669 CGTAGCCGGAGCCAACATG 61.174 63.158 5.05 0.00 41.25 3.21
513 514 0.314935 ATTTTTGCACCTGGTCTGCG 59.685 50.000 0.00 0.00 37.46 5.18
517 518 1.401539 GCTCGATTTTTGCACCTGGTC 60.402 52.381 0.00 0.00 0.00 4.02
539 540 4.148825 ATGGGGCGACGTGAGCTC 62.149 66.667 6.82 6.82 34.52 4.09
561 562 2.416162 GGTGACTTCTCTTACTCGCCAG 60.416 54.545 0.00 0.00 34.07 4.85
562 563 1.544691 GGTGACTTCTCTTACTCGCCA 59.455 52.381 0.00 0.00 34.07 5.69
567 569 7.365117 CCAATTAGATGGGTGACTTCTCTTACT 60.365 40.741 0.00 0.00 36.79 2.24
578 580 2.569853 ACACGTCCAATTAGATGGGTGA 59.430 45.455 0.00 0.00 38.01 4.02
580 582 2.838202 AGACACGTCCAATTAGATGGGT 59.162 45.455 0.19 0.19 42.16 4.51
581 583 3.198068 CAGACACGTCCAATTAGATGGG 58.802 50.000 0.00 0.00 41.05 4.00
582 584 3.861840 ACAGACACGTCCAATTAGATGG 58.138 45.455 0.00 0.00 42.12 3.51
588 590 9.405587 CATTTAAAATTACAGACACGTCCAATT 57.594 29.630 0.00 0.00 0.00 2.32
589 591 8.573035 ACATTTAAAATTACAGACACGTCCAAT 58.427 29.630 0.00 0.00 0.00 3.16
590 592 7.932335 ACATTTAAAATTACAGACACGTCCAA 58.068 30.769 0.00 0.00 0.00 3.53
614 617 7.996385 AGGCATATAAAATCAACACAGGTAAC 58.004 34.615 0.00 0.00 0.00 2.50
619 622 9.590451 AAAATGAGGCATATAAAATCAACACAG 57.410 29.630 0.00 0.00 0.00 3.66
620 623 9.368674 CAAAATGAGGCATATAAAATCAACACA 57.631 29.630 0.00 0.00 0.00 3.72
635 638 7.862512 ATTTCAAAGAAAACAAAATGAGGCA 57.137 28.000 0.00 0.00 0.00 4.75
636 639 9.815936 CATATTTCAAAGAAAACAAAATGAGGC 57.184 29.630 0.00 0.00 0.00 4.70
672 675 7.461749 AGTCTGAGACATCCCTTCAATAAAAA 58.538 34.615 15.86 0.00 34.60 1.94
673 676 7.020827 AGTCTGAGACATCCCTTCAATAAAA 57.979 36.000 15.86 0.00 34.60 1.52
674 677 6.627087 AGTCTGAGACATCCCTTCAATAAA 57.373 37.500 15.86 0.00 34.60 1.40
675 678 6.441924 AGAAGTCTGAGACATCCCTTCAATAA 59.558 38.462 15.86 0.00 31.64 1.40
676 679 5.960811 AGAAGTCTGAGACATCCCTTCAATA 59.039 40.000 15.86 0.00 31.64 1.90
677 680 4.782156 AGAAGTCTGAGACATCCCTTCAAT 59.218 41.667 15.86 0.00 31.64 2.57
678 681 4.163427 AGAAGTCTGAGACATCCCTTCAA 58.837 43.478 15.86 0.00 31.64 2.69
679 682 3.784178 AGAAGTCTGAGACATCCCTTCA 58.216 45.455 15.86 0.00 31.64 3.02
680 683 4.817318 AAGAAGTCTGAGACATCCCTTC 57.183 45.455 15.86 9.17 31.64 3.46
681 684 6.688073 TTAAAGAAGTCTGAGACATCCCTT 57.312 37.500 15.86 10.87 31.64 3.95
682 685 6.882768 ATTAAAGAAGTCTGAGACATCCCT 57.117 37.500 15.86 5.08 31.64 4.20
707 710 9.998752 AAGGTGAGAAGCCATATATAGTAGTAT 57.001 33.333 0.00 0.00 0.00 2.12
709 712 8.728596 AAAGGTGAGAAGCCATATATAGTAGT 57.271 34.615 0.00 0.00 0.00 2.73
713 716 8.908786 TTCAAAAGGTGAGAAGCCATATATAG 57.091 34.615 0.00 0.00 37.61 1.31
715 718 8.470002 GTTTTCAAAAGGTGAGAAGCCATATAT 58.530 33.333 0.00 0.00 37.61 0.86
717 720 6.267471 TGTTTTCAAAAGGTGAGAAGCCATAT 59.733 34.615 0.00 0.00 37.61 1.78
719 722 4.405358 TGTTTTCAAAAGGTGAGAAGCCAT 59.595 37.500 0.00 0.00 37.61 4.40
720 723 3.766591 TGTTTTCAAAAGGTGAGAAGCCA 59.233 39.130 0.00 0.00 37.61 4.75
722 725 5.248870 TCTGTTTTCAAAAGGTGAGAAGC 57.751 39.130 0.00 0.00 37.61 3.86
723 726 8.028938 TCTTTTCTGTTTTCAAAAGGTGAGAAG 58.971 33.333 4.72 0.00 37.61 2.85
724 727 7.891561 TCTTTTCTGTTTTCAAAAGGTGAGAA 58.108 30.769 4.72 0.00 37.61 2.87
726 729 7.538575 TCTCTTTTCTGTTTTCAAAAGGTGAG 58.461 34.615 4.72 0.00 37.61 3.51
728 731 8.532977 TTTCTCTTTTCTGTTTTCAAAAGGTG 57.467 30.769 4.72 0.30 31.97 4.00
729 732 9.154847 CATTTCTCTTTTCTGTTTTCAAAAGGT 57.845 29.630 4.72 0.00 31.97 3.50
730 733 9.369904 TCATTTCTCTTTTCTGTTTTCAAAAGG 57.630 29.630 4.72 0.00 31.97 3.11
741 804 5.636543 GGTGCCATTTCATTTCTCTTTTCTG 59.363 40.000 0.00 0.00 0.00 3.02
748 811 3.760684 AGTGAGGTGCCATTTCATTTCTC 59.239 43.478 0.00 0.00 0.00 2.87
749 812 3.508793 CAGTGAGGTGCCATTTCATTTCT 59.491 43.478 0.00 0.00 0.00 2.52
750 813 3.841643 CAGTGAGGTGCCATTTCATTTC 58.158 45.455 0.00 0.00 0.00 2.17
751 814 2.028748 GCAGTGAGGTGCCATTTCATTT 60.029 45.455 0.00 0.00 37.49 2.32
752 815 1.547372 GCAGTGAGGTGCCATTTCATT 59.453 47.619 0.00 0.00 37.49 2.57
753 816 1.180029 GCAGTGAGGTGCCATTTCAT 58.820 50.000 0.00 0.00 37.49 2.57
754 817 0.178995 TGCAGTGAGGTGCCATTTCA 60.179 50.000 0.00 0.00 43.28 2.69
755 818 0.524862 CTGCAGTGAGGTGCCATTTC 59.475 55.000 5.25 0.00 43.28 2.17
756 819 0.111061 TCTGCAGTGAGGTGCCATTT 59.889 50.000 14.67 0.00 43.28 2.32
757 820 0.111061 TTCTGCAGTGAGGTGCCATT 59.889 50.000 14.67 0.00 43.28 3.16
758 821 0.111061 TTTCTGCAGTGAGGTGCCAT 59.889 50.000 14.67 0.00 43.28 4.40
759 822 0.535780 CTTTCTGCAGTGAGGTGCCA 60.536 55.000 14.67 0.00 43.28 4.92
760 823 0.250467 TCTTTCTGCAGTGAGGTGCC 60.250 55.000 14.67 0.00 43.28 5.01
761 824 1.155042 CTCTTTCTGCAGTGAGGTGC 58.845 55.000 14.67 0.00 44.27 5.01
762 825 2.141517 CACTCTTTCTGCAGTGAGGTG 58.858 52.381 25.44 21.04 42.37 4.00
773 836 5.506317 CGCCAACATTTTCTTCACTCTTTCT 60.506 40.000 0.00 0.00 0.00 2.52
782 845 1.963747 CCGACGCCAACATTTTCTTC 58.036 50.000 0.00 0.00 0.00 2.87
785 848 0.109319 ATGCCGACGCCAACATTTTC 60.109 50.000 0.00 0.00 0.00 2.29
856 921 1.270305 CGGCTTGACAAGGAAGACAGA 60.270 52.381 16.80 0.00 0.00 3.41
961 1045 1.699343 CTCGACGAGTCTTTTGGGTC 58.301 55.000 16.83 0.00 0.00 4.46
978 1062 1.183549 TGGAAAGTAGTCGGGAGCTC 58.816 55.000 4.71 4.71 0.00 4.09
987 1071 3.682718 CGATGGCCATCTTGGAAAGTAGT 60.683 47.826 36.51 4.68 46.34 2.73
988 1072 2.874701 CGATGGCCATCTTGGAAAGTAG 59.125 50.000 36.51 17.61 46.34 2.57
989 1073 2.917933 CGATGGCCATCTTGGAAAGTA 58.082 47.619 36.51 0.00 46.34 2.24
1447 1549 6.380095 ACAGTAACAGAGTACATAGCTAGC 57.620 41.667 6.62 6.62 0.00 3.42
1448 1550 8.244802 ACAAACAGTAACAGAGTACATAGCTAG 58.755 37.037 0.00 0.00 0.00 3.42
1450 1552 6.994221 ACAAACAGTAACAGAGTACATAGCT 58.006 36.000 0.00 0.00 0.00 3.32
1451 1553 7.653767 AACAAACAGTAACAGAGTACATAGC 57.346 36.000 0.00 0.00 0.00 2.97
1452 1554 9.042008 ACAAACAAACAGTAACAGAGTACATAG 57.958 33.333 0.00 0.00 0.00 2.23
1454 1556 7.859325 ACAAACAAACAGTAACAGAGTACAT 57.141 32.000 0.00 0.00 0.00 2.29
1455 1557 7.675962 AACAAACAAACAGTAACAGAGTACA 57.324 32.000 0.00 0.00 0.00 2.90
1456 1558 8.876790 AGTAACAAACAAACAGTAACAGAGTAC 58.123 33.333 0.00 0.00 0.00 2.73
1457 1559 9.439500 AAGTAACAAACAAACAGTAACAGAGTA 57.561 29.630 0.00 0.00 0.00 2.59
1458 1560 7.916914 AGTAACAAACAAACAGTAACAGAGT 57.083 32.000 0.00 0.00 0.00 3.24
1476 1584 3.746045 AAGAACCGAGAGCAAGTAACA 57.254 42.857 0.00 0.00 0.00 2.41
1480 1588 1.141053 ACCAAAGAACCGAGAGCAAGT 59.859 47.619 0.00 0.00 0.00 3.16
1483 1591 2.367567 ACTAACCAAAGAACCGAGAGCA 59.632 45.455 0.00 0.00 0.00 4.26
1484 1592 3.041508 ACTAACCAAAGAACCGAGAGC 57.958 47.619 0.00 0.00 0.00 4.09
1485 1593 7.668525 AAATTACTAACCAAAGAACCGAGAG 57.331 36.000 0.00 0.00 0.00 3.20
1486 1594 8.454570 AAAAATTACTAACCAAAGAACCGAGA 57.545 30.769 0.00 0.00 0.00 4.04
1547 1664 0.897863 TGGTTTTTCCTCATGGCGGG 60.898 55.000 0.00 0.00 37.07 6.13
1553 1670 6.070596 GGAATTTCTCCATGGTTTTTCCTCAT 60.071 38.462 12.58 0.00 44.67 2.90
1571 1688 5.359009 TCATCTTGAGCAGATTGGGAATTTC 59.641 40.000 0.00 0.00 40.67 2.17
1599 1716 2.696759 CCCATTCCCCAAACGACGC 61.697 63.158 0.00 0.00 0.00 5.19
1613 1730 1.479942 GCATCACACCATCATCCCCAT 60.480 52.381 0.00 0.00 0.00 4.00
1614 1731 0.106569 GCATCACACCATCATCCCCA 60.107 55.000 0.00 0.00 0.00 4.96
1615 1732 0.106569 TGCATCACACCATCATCCCC 60.107 55.000 0.00 0.00 0.00 4.81
1616 1733 1.766494 TTGCATCACACCATCATCCC 58.234 50.000 0.00 0.00 0.00 3.85
1617 1734 4.395959 AAATTGCATCACACCATCATCC 57.604 40.909 0.00 0.00 0.00 3.51
1619 1736 5.155278 ACAAAATTGCATCACACCATCAT 57.845 34.783 0.00 0.00 0.00 2.45
1620 1737 4.603989 ACAAAATTGCATCACACCATCA 57.396 36.364 0.00 0.00 0.00 3.07
1640 1765 6.322491 GGCTCCAAAAATGAACATACAGTAC 58.678 40.000 0.00 0.00 0.00 2.73
1641 1766 5.123186 CGGCTCCAAAAATGAACATACAGTA 59.877 40.000 0.00 0.00 0.00 2.74
1642 1767 4.082787 CGGCTCCAAAAATGAACATACAGT 60.083 41.667 0.00 0.00 0.00 3.55
1643 1768 4.155826 TCGGCTCCAAAAATGAACATACAG 59.844 41.667 0.00 0.00 0.00 2.74
1644 1769 4.075682 TCGGCTCCAAAAATGAACATACA 58.924 39.130 0.00 0.00 0.00 2.29
1645 1770 4.695217 TCGGCTCCAAAAATGAACATAC 57.305 40.909 0.00 0.00 0.00 2.39
1646 1771 4.946772 TCATCGGCTCCAAAAATGAACATA 59.053 37.500 0.00 0.00 0.00 2.29
1647 1772 3.763360 TCATCGGCTCCAAAAATGAACAT 59.237 39.130 0.00 0.00 0.00 2.71
1648 1773 3.153130 TCATCGGCTCCAAAAATGAACA 58.847 40.909 0.00 0.00 0.00 3.18
1649 1774 3.191371 ACTCATCGGCTCCAAAAATGAAC 59.809 43.478 0.00 0.00 0.00 3.18
1650 1775 3.420893 ACTCATCGGCTCCAAAAATGAA 58.579 40.909 0.00 0.00 0.00 2.57
1651 1776 3.071874 ACTCATCGGCTCCAAAAATGA 57.928 42.857 0.00 0.00 0.00 2.57
1652 1777 3.057315 ACAACTCATCGGCTCCAAAAATG 60.057 43.478 0.00 0.00 0.00 2.32
1666 1791 7.962918 GCGACAGATTTACAATAAACAACTCAT 59.037 33.333 0.00 0.00 0.00 2.90
1667 1792 7.172532 AGCGACAGATTTACAATAAACAACTCA 59.827 33.333 0.00 0.00 0.00 3.41
1680 1805 2.594654 CACGAGACAGCGACAGATTTAC 59.405 50.000 0.00 0.00 34.83 2.01
1681 1806 2.863739 CACGAGACAGCGACAGATTTA 58.136 47.619 0.00 0.00 34.83 1.40
1684 1809 1.153939 GCACGAGACAGCGACAGAT 60.154 57.895 0.00 0.00 34.83 2.90
1737 1872 0.257039 CCTTCACTCCCAATCCCCAG 59.743 60.000 0.00 0.00 0.00 4.45
1759 1894 1.227764 CCATCGCCATGACCTCCAG 60.228 63.158 0.00 0.00 30.57 3.86
1760 1895 1.688884 TCCATCGCCATGACCTCCA 60.689 57.895 0.00 0.00 30.57 3.86
1761 1896 1.070445 CTCCATCGCCATGACCTCC 59.930 63.158 0.00 0.00 30.57 4.30
1773 1916 2.107953 GCTGTCGCCTCCTCCATC 59.892 66.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.