Multiple sequence alignment - TraesCS1B01G428100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G428100 chr1B 100.000 3230 0 0 1 3230 653239553 653236324 0.000000e+00 5965.0
1 TraesCS1B01G428100 chr1B 90.846 1868 111 26 630 2476 652638490 652640318 0.000000e+00 2447.0
2 TraesCS1B01G428100 chr1B 87.698 1577 161 17 762 2323 652632894 652634452 0.000000e+00 1807.0
3 TraesCS1B01G428100 chr1B 84.472 1829 210 42 502 2316 652574304 652576072 0.000000e+00 1736.0
4 TraesCS1B01G428100 chr1B 80.764 785 128 19 972 1745 652467685 652468457 2.770000e-165 592.0
5 TraesCS1B01G428100 chr1B 85.166 391 31 15 2174 2560 652577097 652577464 3.040000e-100 375.0
6 TraesCS1B01G428100 chr1B 80.605 397 64 9 71 461 632775980 632776369 8.760000e-76 294.0
7 TraesCS1B01G428100 chr1B 83.500 200 22 6 2687 2886 683109466 683109278 3.310000e-40 176.0
8 TraesCS1B01G428100 chr1B 80.392 204 17 13 2684 2886 653526788 653526607 2.020000e-27 134.0
9 TraesCS1B01G428100 chr1B 89.474 57 6 0 3082 3138 653264912 653264856 4.470000e-09 73.1
10 TraesCS1B01G428100 chr1D 94.207 1847 59 17 491 2323 470525841 470524029 0.000000e+00 2774.0
11 TraesCS1B01G428100 chr1D 90.666 1607 120 20 873 2472 470198289 470199872 0.000000e+00 2109.0
12 TraesCS1B01G428100 chr1D 84.195 1316 181 20 874 2181 470189986 470191282 0.000000e+00 1253.0
13 TraesCS1B01G428100 chr1D 88.901 901 48 19 2347 3230 470524038 470523173 0.000000e+00 1062.0
14 TraesCS1B01G428100 chr1D 79.920 1494 232 46 771 2232 470183744 470185201 0.000000e+00 1035.0
15 TraesCS1B01G428100 chr1D 80.156 1280 216 28 981 2248 470077553 470078806 0.000000e+00 922.0
16 TraesCS1B01G428100 chr1D 80.653 398 59 11 69 459 415397756 415398142 3.150000e-75 292.0
17 TraesCS1B01G428100 chr1D 79.710 207 33 6 2685 2886 470536568 470536366 1.210000e-29 141.0
18 TraesCS1B01G428100 chr1D 88.889 63 7 0 3082 3144 470531159 470531097 9.610000e-11 78.7
19 TraesCS1B01G428100 chr1A 80.275 1602 231 56 766 2323 563783357 563784917 0.000000e+00 1129.0
20 TraesCS1B01G428100 chr1A 79.922 1534 236 50 725 2232 563773846 563775333 0.000000e+00 1061.0
21 TraesCS1B01G428100 chr1A 81.997 1222 145 46 679 1879 563791086 563792253 0.000000e+00 968.0
22 TraesCS1B01G428100 chr1A 81.380 768 116 22 990 1745 563695358 563696110 4.610000e-168 601.0
23 TraesCS1B01G428100 chr1A 80.861 418 57 13 69 471 558889835 558889426 1.130000e-79 307.0
24 TraesCS1B01G428100 chr1A 79.950 404 54 17 65 463 461339231 461339612 4.110000e-69 272.0
25 TraesCS1B01G428100 chr1A 94.017 117 3 4 3070 3183 564118045 564117930 1.190000e-39 174.0
26 TraesCS1B01G428100 chr1A 82.524 206 28 4 2684 2886 564130859 564130659 1.190000e-39 174.0
27 TraesCS1B01G428100 chr4D 84.848 429 42 14 65 477 320042970 320043391 8.340000e-111 411.0
28 TraesCS1B01G428100 chr4D 75.224 335 49 20 68 383 506049633 506049952 9.410000e-26 128.0
29 TraesCS1B01G428100 chr7B 82.892 415 48 15 69 468 627913107 627912701 5.130000e-93 351.0
30 TraesCS1B01G428100 chr2D 86.154 325 39 5 148 470 561232503 561232183 2.390000e-91 346.0
31 TraesCS1B01G428100 chr2D 79.699 399 56 14 70 454 12289024 12289411 6.870000e-67 265.0
32 TraesCS1B01G428100 chr7A 81.010 416 57 14 69 471 427556197 427555791 8.700000e-81 311.0
33 TraesCS1B01G428100 chr7A 81.356 177 26 3 289 463 527599440 527599269 1.560000e-28 137.0
34 TraesCS1B01G428100 chrUn 80.702 399 54 17 70 455 12474803 12474415 4.080000e-74 289.0
35 TraesCS1B01G428100 chrUn 83.774 265 39 4 200 463 100486585 100486324 6.920000e-62 248.0
36 TraesCS1B01G428100 chr6D 81.894 359 46 11 116 470 389338189 389338532 5.270000e-73 285.0
37 TraesCS1B01G428100 chr5A 75.346 434 59 26 69 463 57667178 57666754 7.170000e-37 165.0
38 TraesCS1B01G428100 chr2B 84.507 71 9 1 64 132 236044171 236044101 5.780000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G428100 chr1B 653236324 653239553 3229 True 5965.0 5965 100.000 1 3230 1 chr1B.!!$R1 3229
1 TraesCS1B01G428100 chr1B 652638490 652640318 1828 False 2447.0 2447 90.846 630 2476 1 chr1B.!!$F4 1846
2 TraesCS1B01G428100 chr1B 652632894 652634452 1558 False 1807.0 1807 87.698 762 2323 1 chr1B.!!$F3 1561
3 TraesCS1B01G428100 chr1B 652574304 652577464 3160 False 1055.5 1736 84.819 502 2560 2 chr1B.!!$F5 2058
4 TraesCS1B01G428100 chr1B 652467685 652468457 772 False 592.0 592 80.764 972 1745 1 chr1B.!!$F2 773
5 TraesCS1B01G428100 chr1D 470198289 470199872 1583 False 2109.0 2109 90.666 873 2472 1 chr1D.!!$F5 1599
6 TraesCS1B01G428100 chr1D 470523173 470525841 2668 True 1918.0 2774 91.554 491 3230 2 chr1D.!!$R3 2739
7 TraesCS1B01G428100 chr1D 470189986 470191282 1296 False 1253.0 1253 84.195 874 2181 1 chr1D.!!$F4 1307
8 TraesCS1B01G428100 chr1D 470183744 470185201 1457 False 1035.0 1035 79.920 771 2232 1 chr1D.!!$F3 1461
9 TraesCS1B01G428100 chr1D 470077553 470078806 1253 False 922.0 922 80.156 981 2248 1 chr1D.!!$F2 1267
10 TraesCS1B01G428100 chr1A 563783357 563784917 1560 False 1129.0 1129 80.275 766 2323 1 chr1A.!!$F4 1557
11 TraesCS1B01G428100 chr1A 563773846 563775333 1487 False 1061.0 1061 79.922 725 2232 1 chr1A.!!$F3 1507
12 TraesCS1B01G428100 chr1A 563791086 563792253 1167 False 968.0 968 81.997 679 1879 1 chr1A.!!$F5 1200
13 TraesCS1B01G428100 chr1A 563695358 563696110 752 False 601.0 601 81.380 990 1745 1 chr1A.!!$F2 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 478 0.172578 ATCGCGTCGTCCTGAATTGA 59.827 50.0 5.77 0.0 0.0 2.57 F
478 479 0.456142 TCGCGTCGTCCTGAATTGAG 60.456 55.0 5.77 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1358 0.706433 AGGGGTTGACCATGAAGCAT 59.294 50.0 2.12 0.0 42.91 3.79 R
2251 2310 0.882927 TTGCATAGCGATAACGGGCC 60.883 55.0 0.00 0.0 40.15 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.127917 GGTATTTTACCTGGCAAAATGTTTG 57.872 36.000 22.25 0.00 45.52 2.93
61 62 6.931840 GGTATTTTACCTGGCAAAATGTTTGA 59.068 34.615 22.25 4.65 45.52 2.69
62 63 7.442666 GGTATTTTACCTGGCAAAATGTTTGAA 59.557 33.333 22.25 4.04 45.52 2.69
63 64 8.998377 GTATTTTACCTGGCAAAATGTTTGAAT 58.002 29.630 22.25 2.82 36.51 2.57
64 65 7.872113 TTTTACCTGGCAAAATGTTTGAATT 57.128 28.000 0.62 0.00 0.00 2.17
65 66 6.857777 TTACCTGGCAAAATGTTTGAATTG 57.142 33.333 4.93 0.00 0.00 2.32
66 67 5.033589 ACCTGGCAAAATGTTTGAATTGA 57.966 34.783 4.93 0.00 0.00 2.57
67 68 5.058490 ACCTGGCAAAATGTTTGAATTGAG 58.942 37.500 4.93 0.00 0.00 3.02
68 69 4.083696 CCTGGCAAAATGTTTGAATTGAGC 60.084 41.667 4.93 0.00 0.00 4.26
69 70 3.493877 TGGCAAAATGTTTGAATTGAGCG 59.506 39.130 4.93 0.00 0.00 5.03
70 71 3.740321 GGCAAAATGTTTGAATTGAGCGA 59.260 39.130 4.93 0.00 0.00 4.93
71 72 4.210955 GGCAAAATGTTTGAATTGAGCGAA 59.789 37.500 4.93 0.00 0.00 4.70
72 73 5.106987 GGCAAAATGTTTGAATTGAGCGAAT 60.107 36.000 4.93 0.00 0.00 3.34
73 74 6.090628 GGCAAAATGTTTGAATTGAGCGAATA 59.909 34.615 4.93 0.00 0.00 1.75
74 75 7.201548 GGCAAAATGTTTGAATTGAGCGAATAT 60.202 33.333 4.93 0.00 0.00 1.28
75 76 7.842721 GCAAAATGTTTGAATTGAGCGAATATC 59.157 33.333 4.93 0.00 0.00 1.63
76 77 7.992180 AAATGTTTGAATTGAGCGAATATCC 57.008 32.000 0.00 0.00 0.00 2.59
77 78 6.698008 ATGTTTGAATTGAGCGAATATCCA 57.302 33.333 0.00 0.00 0.00 3.41
78 79 6.698008 TGTTTGAATTGAGCGAATATCCAT 57.302 33.333 0.00 0.00 0.00 3.41
79 80 7.099266 TGTTTGAATTGAGCGAATATCCATT 57.901 32.000 0.00 0.00 0.00 3.16
80 81 7.546358 TGTTTGAATTGAGCGAATATCCATTT 58.454 30.769 0.00 0.00 0.00 2.32
81 82 7.701924 TGTTTGAATTGAGCGAATATCCATTTC 59.298 33.333 0.00 0.00 0.00 2.17
82 83 7.572523 TTGAATTGAGCGAATATCCATTTCT 57.427 32.000 0.00 0.00 0.00 2.52
83 84 6.962686 TGAATTGAGCGAATATCCATTTCTG 58.037 36.000 0.00 0.00 0.00 3.02
84 85 6.767423 TGAATTGAGCGAATATCCATTTCTGA 59.233 34.615 0.00 0.00 0.00 3.27
85 86 6.798315 ATTGAGCGAATATCCATTTCTGAG 57.202 37.500 0.00 0.00 0.00 3.35
86 87 4.060900 TGAGCGAATATCCATTTCTGAGC 58.939 43.478 0.00 0.00 0.00 4.26
87 88 3.406764 AGCGAATATCCATTTCTGAGCC 58.593 45.455 0.00 0.00 0.00 4.70
88 89 3.141398 GCGAATATCCATTTCTGAGCCA 58.859 45.455 0.00 0.00 0.00 4.75
89 90 3.565482 GCGAATATCCATTTCTGAGCCAA 59.435 43.478 0.00 0.00 0.00 4.52
90 91 4.320057 GCGAATATCCATTTCTGAGCCAAG 60.320 45.833 0.00 0.00 0.00 3.61
91 92 4.214971 CGAATATCCATTTCTGAGCCAAGG 59.785 45.833 0.00 0.00 0.00 3.61
92 93 1.772836 ATCCATTTCTGAGCCAAGGC 58.227 50.000 2.02 2.02 42.33 4.35
102 103 3.194719 GCCAAGGCTCATCTGCAC 58.805 61.111 3.29 0.00 38.26 4.57
103 104 1.378250 GCCAAGGCTCATCTGCACT 60.378 57.895 3.29 0.00 38.26 4.40
104 105 1.375098 GCCAAGGCTCATCTGCACTC 61.375 60.000 3.29 0.00 38.26 3.51
105 106 1.088340 CCAAGGCTCATCTGCACTCG 61.088 60.000 0.00 0.00 34.04 4.18
106 107 1.088340 CAAGGCTCATCTGCACTCGG 61.088 60.000 0.00 0.00 34.04 4.63
107 108 2.202987 GGCTCATCTGCACTCGGG 60.203 66.667 0.00 0.00 34.04 5.14
108 109 2.202987 GCTCATCTGCACTCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
109 110 2.725312 GCTCATCTGCACTCGGGGA 61.725 63.158 0.00 0.00 0.00 4.81
110 111 1.900351 CTCATCTGCACTCGGGGAA 59.100 57.895 0.00 0.00 0.00 3.97
111 112 0.179089 CTCATCTGCACTCGGGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
112 113 0.614697 TCATCTGCACTCGGGGAAGA 60.615 55.000 0.00 0.00 0.00 2.87
113 114 0.179089 CATCTGCACTCGGGGAAGAG 60.179 60.000 0.00 0.00 43.56 2.85
114 115 0.324738 ATCTGCACTCGGGGAAGAGA 60.325 55.000 0.62 0.00 40.57 3.10
115 116 0.541998 TCTGCACTCGGGGAAGAGAA 60.542 55.000 0.62 0.00 40.57 2.87
116 117 0.321671 CTGCACTCGGGGAAGAGAAA 59.678 55.000 0.62 0.00 40.57 2.52
117 118 0.762418 TGCACTCGGGGAAGAGAAAA 59.238 50.000 0.62 0.00 40.57 2.29
118 119 1.351017 TGCACTCGGGGAAGAGAAAAT 59.649 47.619 0.62 0.00 40.57 1.82
119 120 2.224769 TGCACTCGGGGAAGAGAAAATT 60.225 45.455 0.62 0.00 40.57 1.82
120 121 2.420372 GCACTCGGGGAAGAGAAAATTC 59.580 50.000 0.62 0.00 40.57 2.17
121 122 3.674997 CACTCGGGGAAGAGAAAATTCA 58.325 45.455 0.62 0.00 40.57 2.57
122 123 3.437049 CACTCGGGGAAGAGAAAATTCAC 59.563 47.826 0.62 0.00 40.57 3.18
123 124 3.072476 ACTCGGGGAAGAGAAAATTCACA 59.928 43.478 0.62 0.00 40.57 3.58
124 125 4.072131 CTCGGGGAAGAGAAAATTCACAA 58.928 43.478 0.00 0.00 40.57 3.33
125 126 4.465886 TCGGGGAAGAGAAAATTCACAAA 58.534 39.130 0.00 0.00 31.40 2.83
126 127 4.890581 TCGGGGAAGAGAAAATTCACAAAA 59.109 37.500 0.00 0.00 31.40 2.44
127 128 5.361285 TCGGGGAAGAGAAAATTCACAAAAA 59.639 36.000 0.00 0.00 31.40 1.94
173 174 6.418057 TTTTGCAAGGAAGATAATTGGTGT 57.582 33.333 0.00 0.00 0.00 4.16
174 175 5.389859 TTGCAAGGAAGATAATTGGTGTG 57.610 39.130 0.00 0.00 0.00 3.82
175 176 4.406456 TGCAAGGAAGATAATTGGTGTGT 58.594 39.130 0.00 0.00 0.00 3.72
176 177 4.218200 TGCAAGGAAGATAATTGGTGTGTG 59.782 41.667 0.00 0.00 0.00 3.82
177 178 4.458989 GCAAGGAAGATAATTGGTGTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
178 179 5.392380 GCAAGGAAGATAATTGGTGTGTGAG 60.392 44.000 0.00 0.00 0.00 3.51
179 180 4.848357 AGGAAGATAATTGGTGTGTGAGG 58.152 43.478 0.00 0.00 0.00 3.86
180 181 4.289672 AGGAAGATAATTGGTGTGTGAGGT 59.710 41.667 0.00 0.00 0.00 3.85
181 182 4.396166 GGAAGATAATTGGTGTGTGAGGTG 59.604 45.833 0.00 0.00 0.00 4.00
182 183 3.347216 AGATAATTGGTGTGTGAGGTGC 58.653 45.455 0.00 0.00 0.00 5.01
183 184 2.647683 TAATTGGTGTGTGAGGTGCA 57.352 45.000 0.00 0.00 0.00 4.57
193 194 2.997485 GTGAGGTGCACTCCAAATTC 57.003 50.000 17.98 0.00 46.01 2.17
194 195 1.541588 GTGAGGTGCACTCCAAATTCC 59.458 52.381 17.98 0.00 46.01 3.01
195 196 1.144708 TGAGGTGCACTCCAAATTCCA 59.855 47.619 17.98 0.00 46.01 3.53
196 197 1.815003 GAGGTGCACTCCAAATTCCAG 59.185 52.381 17.98 0.00 40.49 3.86
197 198 1.145738 AGGTGCACTCCAAATTCCAGT 59.854 47.619 17.98 0.00 0.00 4.00
198 199 1.963515 GGTGCACTCCAAATTCCAGTT 59.036 47.619 17.98 0.00 0.00 3.16
199 200 2.029918 GGTGCACTCCAAATTCCAGTTC 60.030 50.000 17.98 0.00 0.00 3.01
200 201 2.622942 GTGCACTCCAAATTCCAGTTCA 59.377 45.455 10.32 0.00 0.00 3.18
201 202 3.256631 GTGCACTCCAAATTCCAGTTCAT 59.743 43.478 10.32 0.00 0.00 2.57
202 203 3.896888 TGCACTCCAAATTCCAGTTCATT 59.103 39.130 0.00 0.00 0.00 2.57
203 204 4.344679 TGCACTCCAAATTCCAGTTCATTT 59.655 37.500 0.00 0.00 0.00 2.32
204 205 4.687483 GCACTCCAAATTCCAGTTCATTTG 59.313 41.667 0.00 0.00 39.25 2.32
212 213 8.415192 CAAATTCCAGTTCATTTGGACATATG 57.585 34.615 0.00 0.00 44.13 1.78
213 214 7.959658 AATTCCAGTTCATTTGGACATATGA 57.040 32.000 10.38 2.01 44.13 2.15
214 215 7.578310 ATTCCAGTTCATTTGGACATATGAG 57.422 36.000 10.38 0.00 44.13 2.90
215 216 6.065976 TCCAGTTCATTTGGACATATGAGT 57.934 37.500 10.38 0.00 39.74 3.41
216 217 7.194112 TCCAGTTCATTTGGACATATGAGTA 57.806 36.000 10.38 0.00 39.74 2.59
217 218 7.275183 TCCAGTTCATTTGGACATATGAGTAG 58.725 38.462 10.38 0.00 39.74 2.57
218 219 6.017605 CCAGTTCATTTGGACATATGAGTAGC 60.018 42.308 10.38 0.00 37.96 3.58
219 220 6.765036 CAGTTCATTTGGACATATGAGTAGCT 59.235 38.462 10.38 0.00 32.03 3.32
220 221 6.989169 AGTTCATTTGGACATATGAGTAGCTC 59.011 38.462 10.38 0.00 32.03 4.09
221 222 6.737720 TCATTTGGACATATGAGTAGCTCT 57.262 37.500 10.38 0.00 0.00 4.09
222 223 7.129457 TCATTTGGACATATGAGTAGCTCTT 57.871 36.000 10.38 0.00 0.00 2.85
223 224 8.250143 TCATTTGGACATATGAGTAGCTCTTA 57.750 34.615 10.38 0.00 0.00 2.10
224 225 8.363390 TCATTTGGACATATGAGTAGCTCTTAG 58.637 37.037 10.38 0.00 0.00 2.18
225 226 7.898014 TTTGGACATATGAGTAGCTCTTAGA 57.102 36.000 10.38 0.00 0.00 2.10
226 227 7.898014 TTGGACATATGAGTAGCTCTTAGAA 57.102 36.000 10.38 0.00 0.00 2.10
227 228 7.898014 TGGACATATGAGTAGCTCTTAGAAA 57.102 36.000 10.38 0.00 0.00 2.52
228 229 8.306313 TGGACATATGAGTAGCTCTTAGAAAA 57.694 34.615 10.38 0.00 0.00 2.29
229 230 8.758829 TGGACATATGAGTAGCTCTTAGAAAAA 58.241 33.333 10.38 0.00 0.00 1.94
253 254 5.930837 AAAAGACAAATTGGGTCAGAACA 57.069 34.783 11.72 0.00 37.74 3.18
254 255 5.930837 AAAGACAAATTGGGTCAGAACAA 57.069 34.783 11.72 0.00 37.74 2.83
255 256 6.484364 AAAGACAAATTGGGTCAGAACAAT 57.516 33.333 11.72 0.00 38.85 2.71
256 257 7.595819 AAAGACAAATTGGGTCAGAACAATA 57.404 32.000 11.72 0.00 36.36 1.90
257 258 6.575162 AGACAAATTGGGTCAGAACAATAC 57.425 37.500 11.72 0.00 36.36 1.89
258 259 6.068010 AGACAAATTGGGTCAGAACAATACA 58.932 36.000 11.72 0.00 36.36 2.29
259 260 6.721208 AGACAAATTGGGTCAGAACAATACAT 59.279 34.615 11.72 0.00 36.36 2.29
260 261 7.888021 AGACAAATTGGGTCAGAACAATACATA 59.112 33.333 11.72 0.00 36.36 2.29
261 262 8.415950 ACAAATTGGGTCAGAACAATACATAA 57.584 30.769 0.00 0.00 36.36 1.90
262 263 8.865090 ACAAATTGGGTCAGAACAATACATAAA 58.135 29.630 0.00 0.00 36.36 1.40
263 264 9.139174 CAAATTGGGTCAGAACAATACATAAAC 57.861 33.333 2.82 0.00 36.36 2.01
264 265 8.415950 AATTGGGTCAGAACAATACATAAACA 57.584 30.769 2.82 0.00 36.36 2.83
265 266 7.447374 TTGGGTCAGAACAATACATAAACAG 57.553 36.000 0.00 0.00 0.00 3.16
266 267 6.539173 TGGGTCAGAACAATACATAAACAGT 58.461 36.000 0.00 0.00 0.00 3.55
267 268 7.681679 TGGGTCAGAACAATACATAAACAGTA 58.318 34.615 0.00 0.00 0.00 2.74
268 269 8.158132 TGGGTCAGAACAATACATAAACAGTAA 58.842 33.333 0.00 0.00 0.00 2.24
269 270 8.665685 GGGTCAGAACAATACATAAACAGTAAG 58.334 37.037 0.00 0.00 0.00 2.34
270 271 8.175716 GGTCAGAACAATACATAAACAGTAAGC 58.824 37.037 0.00 0.00 0.00 3.09
271 272 8.936864 GTCAGAACAATACATAAACAGTAAGCT 58.063 33.333 0.00 0.00 0.00 3.74
272 273 9.502091 TCAGAACAATACATAAACAGTAAGCTT 57.498 29.630 3.48 3.48 0.00 3.74
276 277 9.908152 AACAATACATAAACAGTAAGCTTTTCC 57.092 29.630 3.20 0.00 0.00 3.13
277 278 9.073475 ACAATACATAAACAGTAAGCTTTTCCA 57.927 29.630 3.20 0.00 0.00 3.53
278 279 9.341899 CAATACATAAACAGTAAGCTTTTCCAC 57.658 33.333 3.20 0.00 0.00 4.02
279 280 6.952773 ACATAAACAGTAAGCTTTTCCACA 57.047 33.333 3.20 0.00 0.00 4.17
280 281 7.524717 ACATAAACAGTAAGCTTTTCCACAT 57.475 32.000 3.20 0.00 0.00 3.21
281 282 7.370383 ACATAAACAGTAAGCTTTTCCACATG 58.630 34.615 3.20 3.83 0.00 3.21
282 283 3.923017 ACAGTAAGCTTTTCCACATGC 57.077 42.857 3.20 0.00 0.00 4.06
283 284 2.558359 ACAGTAAGCTTTTCCACATGCC 59.442 45.455 3.20 0.00 0.00 4.40
284 285 2.094545 CAGTAAGCTTTTCCACATGCCC 60.095 50.000 3.20 0.00 0.00 5.36
285 286 2.171003 GTAAGCTTTTCCACATGCCCT 58.829 47.619 3.20 0.00 0.00 5.19
286 287 2.603075 AAGCTTTTCCACATGCCCTA 57.397 45.000 0.00 0.00 0.00 3.53
287 288 2.603075 AGCTTTTCCACATGCCCTAA 57.397 45.000 0.00 0.00 0.00 2.69
288 289 2.888212 AGCTTTTCCACATGCCCTAAA 58.112 42.857 0.00 0.00 0.00 1.85
289 290 3.444029 AGCTTTTCCACATGCCCTAAAT 58.556 40.909 0.00 0.00 0.00 1.40
290 291 3.840078 AGCTTTTCCACATGCCCTAAATT 59.160 39.130 0.00 0.00 0.00 1.82
291 292 4.286808 AGCTTTTCCACATGCCCTAAATTT 59.713 37.500 0.00 0.00 0.00 1.82
292 293 4.392754 GCTTTTCCACATGCCCTAAATTTG 59.607 41.667 0.00 0.00 0.00 2.32
293 294 5.550290 CTTTTCCACATGCCCTAAATTTGT 58.450 37.500 0.00 0.00 0.00 2.83
294 295 4.799564 TTCCACATGCCCTAAATTTGTC 57.200 40.909 0.00 0.00 0.00 3.18
295 296 4.046286 TCCACATGCCCTAAATTTGTCT 57.954 40.909 0.00 0.00 0.00 3.41
296 297 4.415596 TCCACATGCCCTAAATTTGTCTT 58.584 39.130 0.00 0.00 0.00 3.01
297 298 4.837860 TCCACATGCCCTAAATTTGTCTTT 59.162 37.500 0.00 0.00 0.00 2.52
298 299 5.306678 TCCACATGCCCTAAATTTGTCTTTT 59.693 36.000 0.00 0.00 0.00 2.27
299 300 5.997129 CCACATGCCCTAAATTTGTCTTTTT 59.003 36.000 0.00 0.00 0.00 1.94
327 328 6.586868 GAGAGCTACTCAGATGTTTGAATG 57.413 41.667 7.93 0.00 44.36 2.67
328 329 6.291648 AGAGCTACTCAGATGTTTGAATGA 57.708 37.500 0.00 0.00 32.06 2.57
329 330 6.887013 AGAGCTACTCAGATGTTTGAATGAT 58.113 36.000 0.00 0.00 32.06 2.45
330 331 6.985645 AGAGCTACTCAGATGTTTGAATGATC 59.014 38.462 0.00 0.00 32.06 2.92
331 332 6.887013 AGCTACTCAGATGTTTGAATGATCT 58.113 36.000 0.00 0.00 0.00 2.75
332 333 6.762187 AGCTACTCAGATGTTTGAATGATCTG 59.238 38.462 0.00 0.00 43.01 2.90
333 334 6.760298 GCTACTCAGATGTTTGAATGATCTGA 59.240 38.462 13.08 13.08 46.29 3.27
339 340 9.850628 TCAGATGTTTGAATGATCTGAATTTTC 57.149 29.630 11.93 0.00 45.77 2.29
340 341 8.795341 CAGATGTTTGAATGATCTGAATTTTCG 58.205 33.333 0.00 0.00 43.94 3.46
341 342 8.733458 AGATGTTTGAATGATCTGAATTTTCGA 58.267 29.630 0.00 0.00 0.00 3.71
342 343 8.906636 ATGTTTGAATGATCTGAATTTTCGAG 57.093 30.769 0.00 0.00 0.00 4.04
343 344 7.307694 TGTTTGAATGATCTGAATTTTCGAGG 58.692 34.615 0.00 0.00 0.00 4.63
344 345 6.441093 TTGAATGATCTGAATTTTCGAGGG 57.559 37.500 0.00 0.00 0.00 4.30
345 346 4.336433 TGAATGATCTGAATTTTCGAGGGC 59.664 41.667 0.00 0.00 0.00 5.19
346 347 3.348647 TGATCTGAATTTTCGAGGGCA 57.651 42.857 0.00 0.00 0.00 5.36
347 348 3.009723 TGATCTGAATTTTCGAGGGCAC 58.990 45.455 0.00 0.00 0.00 5.01
367 368 5.587388 CACCTCATGCACCAAATTATCTT 57.413 39.130 0.00 0.00 0.00 2.40
368 369 5.585390 CACCTCATGCACCAAATTATCTTC 58.415 41.667 0.00 0.00 0.00 2.87
369 370 4.646492 ACCTCATGCACCAAATTATCTTCC 59.354 41.667 0.00 0.00 0.00 3.46
370 371 4.646040 CCTCATGCACCAAATTATCTTCCA 59.354 41.667 0.00 0.00 0.00 3.53
371 372 5.303589 CCTCATGCACCAAATTATCTTCCAT 59.696 40.000 0.00 0.00 0.00 3.41
372 373 6.151663 TCATGCACCAAATTATCTTCCATG 57.848 37.500 0.00 0.00 0.00 3.66
373 374 4.389890 TGCACCAAATTATCTTCCATGC 57.610 40.909 0.00 0.00 0.00 4.06
374 375 3.768215 TGCACCAAATTATCTTCCATGCA 59.232 39.130 0.00 0.00 38.17 3.96
375 376 4.222366 TGCACCAAATTATCTTCCATGCAA 59.778 37.500 0.00 0.00 37.59 4.08
376 377 5.177326 GCACCAAATTATCTTCCATGCAAA 58.823 37.500 0.00 0.00 0.00 3.68
377 378 5.642919 GCACCAAATTATCTTCCATGCAAAA 59.357 36.000 0.00 0.00 0.00 2.44
378 379 6.149142 GCACCAAATTATCTTCCATGCAAAAA 59.851 34.615 0.00 0.00 0.00 1.94
431 432 7.836358 TTTCTTTCGAATTTTCTGTTCATCG 57.164 32.000 0.00 0.00 0.00 3.84
432 433 5.382303 TCTTTCGAATTTTCTGTTCATCGC 58.618 37.500 0.00 0.00 0.00 4.58
433 434 3.368321 TCGAATTTTCTGTTCATCGCG 57.632 42.857 0.00 0.00 0.00 5.87
434 435 2.093625 TCGAATTTTCTGTTCATCGCGG 59.906 45.455 6.13 0.00 0.00 6.46
435 436 2.785679 GAATTTTCTGTTCATCGCGGG 58.214 47.619 6.13 0.00 0.00 6.13
436 437 1.821216 ATTTTCTGTTCATCGCGGGT 58.179 45.000 6.13 0.00 0.00 5.28
437 438 0.871722 TTTTCTGTTCATCGCGGGTG 59.128 50.000 6.13 6.13 0.00 4.61
438 439 1.573829 TTTCTGTTCATCGCGGGTGC 61.574 55.000 6.13 0.00 37.91 5.01
439 440 2.723586 TTCTGTTCATCGCGGGTGCA 62.724 55.000 6.13 0.00 42.97 4.57
440 441 2.741985 TGTTCATCGCGGGTGCAG 60.742 61.111 6.13 0.00 42.97 4.41
441 442 4.166011 GTTCATCGCGGGTGCAGC 62.166 66.667 7.55 7.55 42.97 5.25
442 443 4.393155 TTCATCGCGGGTGCAGCT 62.393 61.111 16.65 0.00 42.97 4.24
445 446 4.827087 ATCGCGGGTGCAGCTGAG 62.827 66.667 28.35 24.46 42.97 3.35
468 469 3.898640 GCACCGAATCGCGTCGTC 61.899 66.667 16.47 7.26 39.43 4.20
469 470 3.245315 CACCGAATCGCGTCGTCC 61.245 66.667 16.47 0.00 39.43 4.79
470 471 3.437795 ACCGAATCGCGTCGTCCT 61.438 61.111 16.47 0.00 39.43 3.85
471 472 2.949678 CCGAATCGCGTCGTCCTG 60.950 66.667 16.47 0.00 39.43 3.86
472 473 2.099638 CGAATCGCGTCGTCCTGA 59.900 61.111 5.77 0.00 36.26 3.86
473 474 1.513373 CGAATCGCGTCGTCCTGAA 60.513 57.895 5.77 0.00 36.26 3.02
474 475 0.866061 CGAATCGCGTCGTCCTGAAT 60.866 55.000 5.77 0.00 36.26 2.57
475 476 1.278238 GAATCGCGTCGTCCTGAATT 58.722 50.000 5.77 0.00 0.00 2.17
476 477 0.999406 AATCGCGTCGTCCTGAATTG 59.001 50.000 5.77 0.00 0.00 2.32
477 478 0.172578 ATCGCGTCGTCCTGAATTGA 59.827 50.000 5.77 0.00 0.00 2.57
478 479 0.456142 TCGCGTCGTCCTGAATTGAG 60.456 55.000 5.77 0.00 0.00 3.02
479 480 0.456142 CGCGTCGTCCTGAATTGAGA 60.456 55.000 0.00 0.00 0.00 3.27
480 481 1.799181 CGCGTCGTCCTGAATTGAGAT 60.799 52.381 0.00 0.00 0.00 2.75
481 482 1.855360 GCGTCGTCCTGAATTGAGATC 59.145 52.381 0.00 0.00 0.00 2.75
482 483 2.464865 CGTCGTCCTGAATTGAGATCC 58.535 52.381 0.00 0.00 0.00 3.36
483 484 2.099921 CGTCGTCCTGAATTGAGATCCT 59.900 50.000 0.00 0.00 0.00 3.24
484 485 3.429547 CGTCGTCCTGAATTGAGATCCTT 60.430 47.826 0.00 0.00 0.00 3.36
485 486 4.202020 CGTCGTCCTGAATTGAGATCCTTA 60.202 45.833 0.00 0.00 0.00 2.69
486 487 5.044558 GTCGTCCTGAATTGAGATCCTTAC 58.955 45.833 0.00 0.00 0.00 2.34
487 488 4.956700 TCGTCCTGAATTGAGATCCTTACT 59.043 41.667 0.00 0.00 0.00 2.24
488 489 6.039493 GTCGTCCTGAATTGAGATCCTTACTA 59.961 42.308 0.00 0.00 0.00 1.82
489 490 6.605995 TCGTCCTGAATTGAGATCCTTACTAA 59.394 38.462 0.00 0.00 0.00 2.24
538 545 7.336176 ACTCTGATTTTTATTTACCGAGTTCCC 59.664 37.037 0.00 0.00 0.00 3.97
560 567 3.806949 TGCTTCTTCAAGGTATTGGGT 57.193 42.857 0.00 0.00 37.02 4.51
561 568 3.686016 TGCTTCTTCAAGGTATTGGGTC 58.314 45.455 0.00 0.00 37.02 4.46
572 579 3.591527 AGGTATTGGGTCATGTTTGGAGA 59.408 43.478 0.00 0.00 0.00 3.71
607 614 0.807496 AAATCAGCGAAGAAGCAGGC 59.193 50.000 0.00 0.00 40.15 4.85
673 681 1.145156 CACTTGGTCACACGGTCCA 59.855 57.895 0.00 0.00 0.00 4.02
700 711 3.245668 AAGCCACTCCACGCTCCAG 62.246 63.158 0.00 0.00 33.09 3.86
823 842 1.749638 CGCGGTCTCTCTGGTACCT 60.750 63.158 14.36 0.00 0.00 3.08
1026 1067 4.061596 CAGAAGAGAAGAAACCACACTCC 58.938 47.826 0.00 0.00 0.00 3.85
1305 1358 1.136774 CTTCTCACGCGATGACGGA 59.863 57.895 15.93 4.89 40.15 4.69
1698 1757 0.325933 TGAACATCAGCCAGGACCAG 59.674 55.000 0.00 0.00 0.00 4.00
1889 1948 1.305887 AACCTGGAGGGGACGGTAG 60.306 63.158 0.00 0.00 40.27 3.18
1914 1973 2.859165 TGGGTGGACAGAATGAGTTC 57.141 50.000 0.00 0.00 39.69 3.01
1950 2009 2.143122 GACTTTGAGCATTCACGGTGA 58.857 47.619 6.76 6.76 31.71 4.02
2108 2167 5.263599 AGACTATGCCTATGATGAGGAGAG 58.736 45.833 0.00 0.00 39.15 3.20
2110 2169 0.964700 TGCCTATGATGAGGAGAGCG 59.035 55.000 0.00 0.00 39.15 5.03
2166 2225 0.320946 TCGGTTCCGGTGATCCAAAC 60.321 55.000 11.37 0.00 31.66 2.93
2251 2310 5.007385 AGAGGTTGTTATACTGTTAGCCG 57.993 43.478 0.00 0.00 0.00 5.52
2282 2341 1.445716 CTATGCAAGCTGCTCCCTGC 61.446 60.000 15.90 15.90 45.31 4.85
2317 2377 4.345288 CATGCTATGGATGTTGTTGTTCG 58.655 43.478 0.00 0.00 0.00 3.95
2366 3591 4.929808 AGATGTTGTCGTTCTGTGGTTATC 59.070 41.667 0.00 0.00 0.00 1.75
2384 3609 2.753043 CTGCAAGCCGGGAATGCT 60.753 61.111 20.46 0.00 41.89 3.79
2501 3729 3.942829 AGCTAGCTGTTATCTGCACAAA 58.057 40.909 18.57 0.00 40.25 2.83
2530 3762 2.871022 GCTGCTACTGTGGATGAATGAG 59.129 50.000 0.00 0.00 0.00 2.90
2531 3763 3.681034 GCTGCTACTGTGGATGAATGAGT 60.681 47.826 0.00 0.00 0.00 3.41
2532 3764 3.865446 TGCTACTGTGGATGAATGAGTG 58.135 45.455 0.00 0.00 0.00 3.51
2533 3765 3.515104 TGCTACTGTGGATGAATGAGTGA 59.485 43.478 0.00 0.00 0.00 3.41
2542 3774 8.812513 TGTGGATGAATGAGTGATCTTAAAAT 57.187 30.769 0.00 0.00 0.00 1.82
2560 3792 4.606457 AAATCGTGTTGCTGCTTATCTC 57.394 40.909 0.00 0.00 0.00 2.75
2568 3811 1.236628 GCTGCTTATCTCTGGCATGG 58.763 55.000 0.00 0.00 35.37 3.66
2587 3830 2.777692 TGGTGGTCTCTTTCTTGGTCTT 59.222 45.455 0.00 0.00 0.00 3.01
2588 3831 3.202151 TGGTGGTCTCTTTCTTGGTCTTT 59.798 43.478 0.00 0.00 0.00 2.52
2596 3839 7.308049 GGTCTCTTTCTTGGTCTTTATTGTCAC 60.308 40.741 0.00 0.00 0.00 3.67
2611 3854 1.550524 TGTCACCCTGTAGCTAGCAAG 59.449 52.381 18.83 11.06 0.00 4.01
2613 3856 2.028020 GTCACCCTGTAGCTAGCAAGTT 60.028 50.000 18.83 0.00 0.00 2.66
2617 3860 3.838903 ACCCTGTAGCTAGCAAGTTAGTT 59.161 43.478 18.83 0.00 0.00 2.24
2632 3875 7.375106 CAAGTTAGTTGCTCATCTTCATTCT 57.625 36.000 0.00 0.00 0.00 2.40
2633 3876 7.814642 CAAGTTAGTTGCTCATCTTCATTCTT 58.185 34.615 0.00 0.00 0.00 2.52
2634 3877 7.608308 AGTTAGTTGCTCATCTTCATTCTTC 57.392 36.000 0.00 0.00 0.00 2.87
2645 3888 5.462530 TCTTCATTCTTCAACGTCAGGTA 57.537 39.130 0.00 0.00 0.00 3.08
2719 3962 1.635817 GGAGGGGATTGCTACAGCCA 61.636 60.000 0.00 0.00 41.18 4.75
2761 4004 1.154225 GGCGCCGAATGTGTTCAAG 60.154 57.895 12.58 0.00 33.86 3.02
2770 4013 0.963962 ATGTGTTCAAGGCCTTGCTG 59.036 50.000 36.24 18.29 40.24 4.41
2771 4014 0.106769 TGTGTTCAAGGCCTTGCTGA 60.107 50.000 36.24 20.41 40.24 4.26
2814 4057 3.890527 CCAAGATGGGAGGTGGAAG 57.109 57.895 0.00 0.00 32.67 3.46
2815 4058 0.257039 CCAAGATGGGAGGTGGAAGG 59.743 60.000 0.00 0.00 32.67 3.46
2816 4059 0.257039 CAAGATGGGAGGTGGAAGGG 59.743 60.000 0.00 0.00 0.00 3.95
2817 4060 0.921256 AAGATGGGAGGTGGAAGGGG 60.921 60.000 0.00 0.00 0.00 4.79
2818 4061 1.307866 GATGGGAGGTGGAAGGGGA 60.308 63.158 0.00 0.00 0.00 4.81
2819 4062 0.919289 GATGGGAGGTGGAAGGGGAA 60.919 60.000 0.00 0.00 0.00 3.97
2895 4138 4.557695 CGGATAGGCTTGATACTGTGACTC 60.558 50.000 0.00 0.00 0.00 3.36
2917 4160 4.838423 TCTTGTTCCTGGAATGTCTCACTA 59.162 41.667 13.07 0.00 0.00 2.74
2927 4170 7.062749 TGGAATGTCTCACTATATTGGTACC 57.937 40.000 4.43 4.43 0.00 3.34
2946 4193 5.063060 GGTACCGTGTGTAAATCTCATGTTC 59.937 44.000 0.00 0.00 0.00 3.18
2955 4202 9.012161 TGTGTAAATCTCATGTTCATTGATCAA 57.988 29.630 11.26 11.26 0.00 2.57
2981 4228 2.713967 CCGGCCAGGGAAAATGCAG 61.714 63.158 2.24 0.00 35.97 4.41
2982 4229 1.678635 CGGCCAGGGAAAATGCAGA 60.679 57.895 2.24 0.00 0.00 4.26
2989 4236 0.811281 GGGAAAATGCAGAACCGAGG 59.189 55.000 0.00 0.00 0.00 4.63
2995 4242 0.110486 ATGCAGAACCGAGGGTTGTT 59.890 50.000 4.49 0.00 46.95 2.83
2998 4245 1.001706 GCAGAACCGAGGGTTGTTTTC 60.002 52.381 4.49 0.00 46.95 2.29
3014 4261 7.379750 GGTTGTTTTCTATCTACTCTCACTGT 58.620 38.462 0.00 0.00 0.00 3.55
3037 4285 2.522372 CTGTTCAATCTGCAGCTTCG 57.478 50.000 9.47 1.26 0.00 3.79
3057 4305 3.308438 GGCTAACGAGTTACCAAGACA 57.692 47.619 0.00 0.00 0.00 3.41
3061 4309 4.689345 GCTAACGAGTTACCAAGACACAAT 59.311 41.667 0.00 0.00 0.00 2.71
3062 4310 5.163982 GCTAACGAGTTACCAAGACACAATC 60.164 44.000 0.00 0.00 0.00 2.67
3063 4311 3.660865 ACGAGTTACCAAGACACAATCC 58.339 45.455 0.00 0.00 0.00 3.01
3064 4312 3.000727 CGAGTTACCAAGACACAATCCC 58.999 50.000 0.00 0.00 0.00 3.85
3065 4313 3.556213 CGAGTTACCAAGACACAATCCCA 60.556 47.826 0.00 0.00 0.00 4.37
3066 4314 4.589908 GAGTTACCAAGACACAATCCCAT 58.410 43.478 0.00 0.00 0.00 4.00
3093 4341 4.277515 AGCACACATGAACTGTACAGAT 57.722 40.909 29.30 18.18 35.91 2.90
3094 4342 5.405935 AGCACACATGAACTGTACAGATA 57.594 39.130 29.30 14.32 35.91 1.98
3103 4352 4.039852 TGAACTGTACAGATAGGTGTTGCA 59.960 41.667 29.30 6.16 31.46 4.08
3119 4368 2.998279 GCATTTGCCCAAGCGAGCT 61.998 57.895 0.00 0.00 44.31 4.09
3120 4369 1.138247 CATTTGCCCAAGCGAGCTC 59.862 57.895 2.73 2.73 44.31 4.09
3121 4370 2.048603 ATTTGCCCAAGCGAGCTCC 61.049 57.895 8.47 0.68 44.31 4.70
3124 4373 4.496336 GCCCAAGCGAGCTCCCAT 62.496 66.667 8.47 0.00 0.00 4.00
3125 4374 3.106986 GCCCAAGCGAGCTCCCATA 62.107 63.158 8.47 0.00 0.00 2.74
3126 4375 1.757306 CCCAAGCGAGCTCCCATAT 59.243 57.895 8.47 0.00 0.00 1.78
3129 4378 2.419297 CCCAAGCGAGCTCCCATATATC 60.419 54.545 8.47 0.00 0.00 1.63
3193 4442 1.427592 GGTACGACGGAGACTCCTCG 61.428 65.000 27.53 27.53 40.49 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.954788 TCAAACATTTTGCCAGGTAAAATAC 57.045 32.000 23.45 0.00 36.12 1.89
38 39 9.566432 AATTCAAACATTTTGCCAGGTAAAATA 57.434 25.926 23.45 10.88 36.12 1.40
39 40 8.351461 CAATTCAAACATTTTGCCAGGTAAAAT 58.649 29.630 19.62 19.62 38.09 1.82
40 41 7.554118 TCAATTCAAACATTTTGCCAGGTAAAA 59.446 29.630 16.87 16.87 32.42 1.52
41 42 7.050377 TCAATTCAAACATTTTGCCAGGTAAA 58.950 30.769 0.00 0.00 0.00 2.01
42 43 6.586344 TCAATTCAAACATTTTGCCAGGTAA 58.414 32.000 0.00 0.00 0.00 2.85
43 44 6.166984 TCAATTCAAACATTTTGCCAGGTA 57.833 33.333 0.00 0.00 0.00 3.08
44 45 5.033589 TCAATTCAAACATTTTGCCAGGT 57.966 34.783 0.00 0.00 0.00 4.00
45 46 4.083696 GCTCAATTCAAACATTTTGCCAGG 60.084 41.667 0.00 0.00 0.00 4.45
46 47 4.376615 CGCTCAATTCAAACATTTTGCCAG 60.377 41.667 0.00 0.00 0.00 4.85
47 48 3.493877 CGCTCAATTCAAACATTTTGCCA 59.506 39.130 0.00 0.00 0.00 4.92
48 49 3.740321 TCGCTCAATTCAAACATTTTGCC 59.260 39.130 0.00 0.00 0.00 4.52
49 50 4.970472 TCGCTCAATTCAAACATTTTGC 57.030 36.364 0.00 0.00 0.00 3.68
50 51 8.323140 GGATATTCGCTCAATTCAAACATTTTG 58.677 33.333 0.00 0.00 0.00 2.44
51 52 8.034215 TGGATATTCGCTCAATTCAAACATTTT 58.966 29.630 0.00 0.00 0.00 1.82
52 53 7.546358 TGGATATTCGCTCAATTCAAACATTT 58.454 30.769 0.00 0.00 0.00 2.32
53 54 7.099266 TGGATATTCGCTCAATTCAAACATT 57.901 32.000 0.00 0.00 0.00 2.71
54 55 6.698008 TGGATATTCGCTCAATTCAAACAT 57.302 33.333 0.00 0.00 0.00 2.71
55 56 6.698008 ATGGATATTCGCTCAATTCAAACA 57.302 33.333 0.00 0.00 0.00 2.83
56 57 7.917505 AGAAATGGATATTCGCTCAATTCAAAC 59.082 33.333 0.00 0.00 32.04 2.93
57 58 7.916977 CAGAAATGGATATTCGCTCAATTCAAA 59.083 33.333 0.00 0.00 32.04 2.69
58 59 7.282901 TCAGAAATGGATATTCGCTCAATTCAA 59.717 33.333 0.00 0.00 32.04 2.69
59 60 6.767423 TCAGAAATGGATATTCGCTCAATTCA 59.233 34.615 0.00 0.00 32.04 2.57
60 61 7.194607 TCAGAAATGGATATTCGCTCAATTC 57.805 36.000 0.00 0.00 32.04 2.17
61 62 6.293845 GCTCAGAAATGGATATTCGCTCAATT 60.294 38.462 0.00 0.00 32.04 2.32
62 63 5.180868 GCTCAGAAATGGATATTCGCTCAAT 59.819 40.000 0.00 0.00 32.04 2.57
63 64 4.512944 GCTCAGAAATGGATATTCGCTCAA 59.487 41.667 0.00 0.00 32.04 3.02
64 65 4.060900 GCTCAGAAATGGATATTCGCTCA 58.939 43.478 0.00 0.00 32.04 4.26
65 66 3.434984 GGCTCAGAAATGGATATTCGCTC 59.565 47.826 0.00 0.00 32.04 5.03
66 67 3.181451 TGGCTCAGAAATGGATATTCGCT 60.181 43.478 0.00 0.00 32.04 4.93
67 68 3.141398 TGGCTCAGAAATGGATATTCGC 58.859 45.455 0.00 0.00 32.04 4.70
68 69 4.214971 CCTTGGCTCAGAAATGGATATTCG 59.785 45.833 0.00 0.00 32.04 3.34
69 70 4.022503 GCCTTGGCTCAGAAATGGATATTC 60.023 45.833 4.11 0.00 0.00 1.75
70 71 3.893813 GCCTTGGCTCAGAAATGGATATT 59.106 43.478 4.11 0.00 0.00 1.28
71 72 3.139770 AGCCTTGGCTCAGAAATGGATAT 59.860 43.478 8.56 0.00 0.00 1.63
72 73 2.511218 AGCCTTGGCTCAGAAATGGATA 59.489 45.455 8.56 0.00 0.00 2.59
73 74 1.287146 AGCCTTGGCTCAGAAATGGAT 59.713 47.619 8.56 0.00 0.00 3.41
74 75 0.700564 AGCCTTGGCTCAGAAATGGA 59.299 50.000 8.56 0.00 0.00 3.41
75 76 1.101331 GAGCCTTGGCTCAGAAATGG 58.899 55.000 30.25 0.00 36.86 3.16
76 77 1.830279 TGAGCCTTGGCTCAGAAATG 58.170 50.000 32.97 0.00 41.27 2.32
83 84 1.077930 TGCAGATGAGCCTTGGCTC 60.078 57.895 29.03 29.03 37.35 4.70
84 85 1.378250 GTGCAGATGAGCCTTGGCT 60.378 57.895 14.69 14.69 0.00 4.75
85 86 1.375098 GAGTGCAGATGAGCCTTGGC 61.375 60.000 2.97 2.97 0.00 4.52
86 87 1.088340 CGAGTGCAGATGAGCCTTGG 61.088 60.000 0.00 0.00 0.00 3.61
87 88 1.088340 CCGAGTGCAGATGAGCCTTG 61.088 60.000 0.00 0.00 0.00 3.61
88 89 1.220206 CCGAGTGCAGATGAGCCTT 59.780 57.895 0.00 0.00 0.00 4.35
89 90 2.729479 CCCGAGTGCAGATGAGCCT 61.729 63.158 0.00 0.00 0.00 4.58
90 91 2.202987 CCCGAGTGCAGATGAGCC 60.203 66.667 0.00 0.00 0.00 4.70
91 92 2.202987 CCCCGAGTGCAGATGAGC 60.203 66.667 0.00 0.00 0.00 4.26
92 93 0.179089 CTTCCCCGAGTGCAGATGAG 60.179 60.000 0.00 0.00 0.00 2.90
93 94 0.614697 TCTTCCCCGAGTGCAGATGA 60.615 55.000 0.00 0.00 0.00 2.92
94 95 0.179089 CTCTTCCCCGAGTGCAGATG 60.179 60.000 0.00 0.00 0.00 2.90
95 96 0.324738 TCTCTTCCCCGAGTGCAGAT 60.325 55.000 0.00 0.00 32.83 2.90
96 97 0.541998 TTCTCTTCCCCGAGTGCAGA 60.542 55.000 0.00 0.00 32.83 4.26
97 98 0.321671 TTTCTCTTCCCCGAGTGCAG 59.678 55.000 0.00 0.00 32.83 4.41
98 99 0.762418 TTTTCTCTTCCCCGAGTGCA 59.238 50.000 0.00 0.00 32.83 4.57
99 100 2.115343 ATTTTCTCTTCCCCGAGTGC 57.885 50.000 0.00 0.00 32.83 4.40
100 101 3.437049 GTGAATTTTCTCTTCCCCGAGTG 59.563 47.826 0.00 0.00 32.83 3.51
101 102 3.072476 TGTGAATTTTCTCTTCCCCGAGT 59.928 43.478 0.00 0.00 32.83 4.18
102 103 3.674997 TGTGAATTTTCTCTTCCCCGAG 58.325 45.455 0.00 0.00 0.00 4.63
103 104 3.780804 TGTGAATTTTCTCTTCCCCGA 57.219 42.857 0.00 0.00 0.00 5.14
104 105 4.846779 TTTGTGAATTTTCTCTTCCCCG 57.153 40.909 0.00 0.00 0.00 5.73
149 150 6.705381 CACACCAATTATCTTCCTTGCAAAAA 59.295 34.615 0.00 0.00 0.00 1.94
150 151 6.183360 ACACACCAATTATCTTCCTTGCAAAA 60.183 34.615 0.00 0.00 0.00 2.44
151 152 5.304101 ACACACCAATTATCTTCCTTGCAAA 59.696 36.000 0.00 0.00 0.00 3.68
152 153 4.832266 ACACACCAATTATCTTCCTTGCAA 59.168 37.500 0.00 0.00 0.00 4.08
153 154 4.218200 CACACACCAATTATCTTCCTTGCA 59.782 41.667 0.00 0.00 0.00 4.08
154 155 4.458989 TCACACACCAATTATCTTCCTTGC 59.541 41.667 0.00 0.00 0.00 4.01
155 156 5.124457 CCTCACACACCAATTATCTTCCTTG 59.876 44.000 0.00 0.00 0.00 3.61
156 157 5.222130 ACCTCACACACCAATTATCTTCCTT 60.222 40.000 0.00 0.00 0.00 3.36
157 158 4.289672 ACCTCACACACCAATTATCTTCCT 59.710 41.667 0.00 0.00 0.00 3.36
158 159 4.396166 CACCTCACACACCAATTATCTTCC 59.604 45.833 0.00 0.00 0.00 3.46
159 160 4.142600 GCACCTCACACACCAATTATCTTC 60.143 45.833 0.00 0.00 0.00 2.87
160 161 3.758554 GCACCTCACACACCAATTATCTT 59.241 43.478 0.00 0.00 0.00 2.40
161 162 3.244875 TGCACCTCACACACCAATTATCT 60.245 43.478 0.00 0.00 0.00 1.98
162 163 3.081061 TGCACCTCACACACCAATTATC 58.919 45.455 0.00 0.00 0.00 1.75
163 164 2.819608 GTGCACCTCACACACCAATTAT 59.180 45.455 5.22 0.00 44.98 1.28
164 165 2.226330 GTGCACCTCACACACCAATTA 58.774 47.619 5.22 0.00 44.98 1.40
165 166 1.032014 GTGCACCTCACACACCAATT 58.968 50.000 5.22 0.00 44.98 2.32
166 167 2.719376 GTGCACCTCACACACCAAT 58.281 52.632 5.22 0.00 44.98 3.16
167 168 4.234019 GTGCACCTCACACACCAA 57.766 55.556 5.22 0.00 44.98 3.67
174 175 1.541588 GGAATTTGGAGTGCACCTCAC 59.458 52.381 14.63 1.75 45.98 3.51
175 176 1.144708 TGGAATTTGGAGTGCACCTCA 59.855 47.619 14.63 9.53 42.40 3.86
176 177 1.815003 CTGGAATTTGGAGTGCACCTC 59.185 52.381 14.63 10.34 39.67 3.85
177 178 1.145738 ACTGGAATTTGGAGTGCACCT 59.854 47.619 14.63 0.04 0.00 4.00
178 179 1.620822 ACTGGAATTTGGAGTGCACC 58.379 50.000 14.63 4.90 0.00 5.01
179 180 2.622942 TGAACTGGAATTTGGAGTGCAC 59.377 45.455 9.40 9.40 0.00 4.57
180 181 2.942804 TGAACTGGAATTTGGAGTGCA 58.057 42.857 0.00 0.00 0.00 4.57
181 182 4.525912 AATGAACTGGAATTTGGAGTGC 57.474 40.909 0.00 0.00 0.00 4.40
187 188 8.252417 TCATATGTCCAAATGAACTGGAATTTG 58.748 33.333 1.90 0.00 44.55 2.32
188 189 8.365060 TCATATGTCCAAATGAACTGGAATTT 57.635 30.769 1.90 0.00 44.55 1.82
189 190 7.616935 ACTCATATGTCCAAATGAACTGGAATT 59.383 33.333 1.90 0.00 44.55 2.17
190 191 7.121382 ACTCATATGTCCAAATGAACTGGAAT 58.879 34.615 1.90 0.00 44.55 3.01
191 192 6.484288 ACTCATATGTCCAAATGAACTGGAA 58.516 36.000 1.90 0.00 44.55 3.53
192 193 6.065976 ACTCATATGTCCAAATGAACTGGA 57.934 37.500 1.90 0.00 40.77 3.86
193 194 6.017605 GCTACTCATATGTCCAAATGAACTGG 60.018 42.308 1.90 0.00 31.97 4.00
194 195 6.765036 AGCTACTCATATGTCCAAATGAACTG 59.235 38.462 1.90 0.00 31.97 3.16
195 196 6.893583 AGCTACTCATATGTCCAAATGAACT 58.106 36.000 1.90 0.00 31.97 3.01
196 197 6.989169 AGAGCTACTCATATGTCCAAATGAAC 59.011 38.462 1.90 0.00 31.97 3.18
197 198 7.129457 AGAGCTACTCATATGTCCAAATGAA 57.871 36.000 1.90 0.00 31.97 2.57
198 199 6.737720 AGAGCTACTCATATGTCCAAATGA 57.262 37.500 1.90 0.00 32.06 2.57
199 200 8.363390 TCTAAGAGCTACTCATATGTCCAAATG 58.637 37.037 1.90 0.00 32.06 2.32
200 201 8.484214 TCTAAGAGCTACTCATATGTCCAAAT 57.516 34.615 1.90 0.00 32.06 2.32
201 202 7.898014 TCTAAGAGCTACTCATATGTCCAAA 57.102 36.000 1.90 0.00 32.06 3.28
202 203 7.898014 TTCTAAGAGCTACTCATATGTCCAA 57.102 36.000 1.90 0.00 32.06 3.53
203 204 7.898014 TTTCTAAGAGCTACTCATATGTCCA 57.102 36.000 1.90 0.00 32.06 4.02
230 231 6.293004 TGTTCTGACCCAATTTGTCTTTTT 57.707 33.333 6.47 0.00 33.83 1.94
231 232 5.930837 TGTTCTGACCCAATTTGTCTTTT 57.069 34.783 6.47 0.00 33.83 2.27
232 233 5.930837 TTGTTCTGACCCAATTTGTCTTT 57.069 34.783 6.47 0.00 33.83 2.52
233 234 6.549364 TGTATTGTTCTGACCCAATTTGTCTT 59.451 34.615 6.96 0.00 33.54 3.01
234 235 6.068010 TGTATTGTTCTGACCCAATTTGTCT 58.932 36.000 6.96 0.00 33.54 3.41
235 236 6.325919 TGTATTGTTCTGACCCAATTTGTC 57.674 37.500 6.96 0.00 33.54 3.18
236 237 6.916360 ATGTATTGTTCTGACCCAATTTGT 57.084 33.333 6.96 0.00 33.54 2.83
237 238 9.139174 GTTTATGTATTGTTCTGACCCAATTTG 57.861 33.333 6.96 0.00 33.54 2.32
238 239 8.865090 TGTTTATGTATTGTTCTGACCCAATTT 58.135 29.630 6.96 0.00 33.54 1.82
239 240 8.415950 TGTTTATGTATTGTTCTGACCCAATT 57.584 30.769 6.96 0.00 33.54 2.32
240 241 7.669722 ACTGTTTATGTATTGTTCTGACCCAAT 59.330 33.333 6.88 6.88 35.55 3.16
241 242 7.001674 ACTGTTTATGTATTGTTCTGACCCAA 58.998 34.615 0.00 0.00 0.00 4.12
242 243 6.539173 ACTGTTTATGTATTGTTCTGACCCA 58.461 36.000 0.00 0.00 0.00 4.51
243 244 8.556213 TTACTGTTTATGTATTGTTCTGACCC 57.444 34.615 0.00 0.00 0.00 4.46
244 245 8.175716 GCTTACTGTTTATGTATTGTTCTGACC 58.824 37.037 0.00 0.00 0.00 4.02
245 246 8.936864 AGCTTACTGTTTATGTATTGTTCTGAC 58.063 33.333 0.00 0.00 0.00 3.51
246 247 9.502091 AAGCTTACTGTTTATGTATTGTTCTGA 57.498 29.630 0.00 0.00 0.00 3.27
250 251 9.908152 GGAAAAGCTTACTGTTTATGTATTGTT 57.092 29.630 0.00 0.00 0.00 2.83
251 252 9.073475 TGGAAAAGCTTACTGTTTATGTATTGT 57.927 29.630 0.00 0.00 0.00 2.71
252 253 9.341899 GTGGAAAAGCTTACTGTTTATGTATTG 57.658 33.333 0.00 0.00 0.00 1.90
253 254 9.073475 TGTGGAAAAGCTTACTGTTTATGTATT 57.927 29.630 0.00 0.00 0.00 1.89
254 255 8.630054 TGTGGAAAAGCTTACTGTTTATGTAT 57.370 30.769 0.00 0.00 0.00 2.29
255 256 8.511321 CATGTGGAAAAGCTTACTGTTTATGTA 58.489 33.333 0.00 0.00 0.00 2.29
256 257 6.952773 TGTGGAAAAGCTTACTGTTTATGT 57.047 33.333 0.00 0.00 0.00 2.29
257 258 6.308766 GCATGTGGAAAAGCTTACTGTTTATG 59.691 38.462 0.00 1.50 0.00 1.90
258 259 6.389906 GCATGTGGAAAAGCTTACTGTTTAT 58.610 36.000 0.00 0.00 0.00 1.40
259 260 5.278758 GGCATGTGGAAAAGCTTACTGTTTA 60.279 40.000 0.00 0.00 0.00 2.01
260 261 4.501400 GGCATGTGGAAAAGCTTACTGTTT 60.501 41.667 0.00 0.00 0.00 2.83
261 262 3.005791 GGCATGTGGAAAAGCTTACTGTT 59.994 43.478 0.00 0.00 0.00 3.16
262 263 2.558359 GGCATGTGGAAAAGCTTACTGT 59.442 45.455 0.00 0.00 0.00 3.55
263 264 2.094545 GGGCATGTGGAAAAGCTTACTG 60.095 50.000 0.00 0.00 0.00 2.74
264 265 2.171003 GGGCATGTGGAAAAGCTTACT 58.829 47.619 0.00 0.00 0.00 2.24
265 266 2.171003 AGGGCATGTGGAAAAGCTTAC 58.829 47.619 0.00 0.00 0.00 2.34
266 267 2.603075 AGGGCATGTGGAAAAGCTTA 57.397 45.000 0.00 0.00 0.00 3.09
267 268 2.603075 TAGGGCATGTGGAAAAGCTT 57.397 45.000 0.00 0.00 0.00 3.74
268 269 2.603075 TTAGGGCATGTGGAAAAGCT 57.397 45.000 0.00 0.00 0.00 3.74
269 270 3.893326 ATTTAGGGCATGTGGAAAAGC 57.107 42.857 0.00 0.00 0.00 3.51
270 271 5.550290 ACAAATTTAGGGCATGTGGAAAAG 58.450 37.500 0.00 0.00 0.00 2.27
271 272 5.306678 AGACAAATTTAGGGCATGTGGAAAA 59.693 36.000 0.00 0.00 0.00 2.29
272 273 4.837860 AGACAAATTTAGGGCATGTGGAAA 59.162 37.500 0.00 0.00 0.00 3.13
273 274 4.415596 AGACAAATTTAGGGCATGTGGAA 58.584 39.130 0.00 0.00 0.00 3.53
274 275 4.046286 AGACAAATTTAGGGCATGTGGA 57.954 40.909 0.00 0.00 0.00 4.02
275 276 4.806640 AAGACAAATTTAGGGCATGTGG 57.193 40.909 0.00 0.00 0.00 4.17
304 305 6.336566 TCATTCAAACATCTGAGTAGCTCTC 58.663 40.000 0.00 0.00 43.03 3.20
305 306 6.291648 TCATTCAAACATCTGAGTAGCTCT 57.708 37.500 0.00 0.00 0.00 4.09
306 307 6.985645 AGATCATTCAAACATCTGAGTAGCTC 59.014 38.462 0.00 0.00 0.00 4.09
307 308 6.762187 CAGATCATTCAAACATCTGAGTAGCT 59.238 38.462 2.54 0.00 44.35 3.32
308 309 6.760298 TCAGATCATTCAAACATCTGAGTAGC 59.240 38.462 6.73 0.00 44.92 3.58
314 315 8.795341 CGAAAATTCAGATCATTCAAACATCTG 58.205 33.333 0.00 2.32 43.38 2.90
315 316 8.733458 TCGAAAATTCAGATCATTCAAACATCT 58.267 29.630 0.00 0.00 0.00 2.90
316 317 8.900511 TCGAAAATTCAGATCATTCAAACATC 57.099 30.769 0.00 0.00 0.00 3.06
317 318 7.972277 CCTCGAAAATTCAGATCATTCAAACAT 59.028 33.333 0.00 0.00 0.00 2.71
318 319 7.307694 CCTCGAAAATTCAGATCATTCAAACA 58.692 34.615 0.00 0.00 0.00 2.83
319 320 6.749118 CCCTCGAAAATTCAGATCATTCAAAC 59.251 38.462 0.00 0.00 0.00 2.93
320 321 6.625740 GCCCTCGAAAATTCAGATCATTCAAA 60.626 38.462 0.00 0.00 0.00 2.69
321 322 5.163622 GCCCTCGAAAATTCAGATCATTCAA 60.164 40.000 0.00 0.00 0.00 2.69
322 323 4.336433 GCCCTCGAAAATTCAGATCATTCA 59.664 41.667 0.00 0.00 0.00 2.57
323 324 4.336433 TGCCCTCGAAAATTCAGATCATTC 59.664 41.667 0.00 0.00 0.00 2.67
324 325 4.096984 GTGCCCTCGAAAATTCAGATCATT 59.903 41.667 0.00 0.00 0.00 2.57
325 326 3.629398 GTGCCCTCGAAAATTCAGATCAT 59.371 43.478 0.00 0.00 0.00 2.45
326 327 3.009723 GTGCCCTCGAAAATTCAGATCA 58.990 45.455 0.00 0.00 0.00 2.92
327 328 2.356069 GGTGCCCTCGAAAATTCAGATC 59.644 50.000 0.00 0.00 0.00 2.75
328 329 2.025887 AGGTGCCCTCGAAAATTCAGAT 60.026 45.455 0.00 0.00 0.00 2.90
329 330 1.351017 AGGTGCCCTCGAAAATTCAGA 59.649 47.619 0.00 0.00 0.00 3.27
330 331 1.740025 GAGGTGCCCTCGAAAATTCAG 59.260 52.381 5.60 0.00 41.08 3.02
331 332 1.821216 GAGGTGCCCTCGAAAATTCA 58.179 50.000 5.60 0.00 41.08 2.57
345 346 5.450965 GGAAGATAATTTGGTGCATGAGGTG 60.451 44.000 0.00 0.00 0.00 4.00
346 347 4.646492 GGAAGATAATTTGGTGCATGAGGT 59.354 41.667 0.00 0.00 0.00 3.85
347 348 4.646040 TGGAAGATAATTTGGTGCATGAGG 59.354 41.667 0.00 0.00 0.00 3.86
348 349 5.840243 TGGAAGATAATTTGGTGCATGAG 57.160 39.130 0.00 0.00 0.00 2.90
349 350 5.452216 GCATGGAAGATAATTTGGTGCATGA 60.452 40.000 13.18 0.00 39.55 3.07
350 351 4.748102 GCATGGAAGATAATTTGGTGCATG 59.252 41.667 0.00 0.00 39.99 4.06
351 352 4.406326 TGCATGGAAGATAATTTGGTGCAT 59.594 37.500 0.00 0.00 35.41 3.96
352 353 3.768215 TGCATGGAAGATAATTTGGTGCA 59.232 39.130 0.00 0.00 37.69 4.57
353 354 4.389890 TGCATGGAAGATAATTTGGTGC 57.610 40.909 0.00 0.00 0.00 5.01
354 355 7.670009 TTTTTGCATGGAAGATAATTTGGTG 57.330 32.000 0.00 0.00 0.00 4.17
409 410 5.382303 GCGATGAACAGAAAATTCGAAAGA 58.618 37.500 0.00 0.00 39.20 2.52
410 411 4.258359 CGCGATGAACAGAAAATTCGAAAG 59.742 41.667 0.00 0.00 0.00 2.62
411 412 4.148166 CGCGATGAACAGAAAATTCGAAA 58.852 39.130 0.00 0.00 0.00 3.46
412 413 3.424302 CCGCGATGAACAGAAAATTCGAA 60.424 43.478 8.23 0.00 0.00 3.71
413 414 2.093625 CCGCGATGAACAGAAAATTCGA 59.906 45.455 8.23 0.00 0.00 3.71
414 415 2.430956 CCGCGATGAACAGAAAATTCG 58.569 47.619 8.23 0.00 0.00 3.34
415 416 2.161609 ACCCGCGATGAACAGAAAATTC 59.838 45.455 8.23 0.00 0.00 2.17
416 417 2.095263 CACCCGCGATGAACAGAAAATT 60.095 45.455 8.23 0.00 0.00 1.82
417 418 1.468520 CACCCGCGATGAACAGAAAAT 59.531 47.619 8.23 0.00 0.00 1.82
418 419 0.871722 CACCCGCGATGAACAGAAAA 59.128 50.000 8.23 0.00 0.00 2.29
419 420 1.573829 GCACCCGCGATGAACAGAAA 61.574 55.000 8.23 0.00 0.00 2.52
420 421 2.032634 GCACCCGCGATGAACAGAA 61.033 57.895 8.23 0.00 0.00 3.02
421 422 2.434185 GCACCCGCGATGAACAGA 60.434 61.111 8.23 0.00 0.00 3.41
422 423 2.741985 TGCACCCGCGATGAACAG 60.742 61.111 8.23 0.00 42.97 3.16
423 424 2.741985 CTGCACCCGCGATGAACA 60.742 61.111 8.23 0.00 42.97 3.18
424 425 4.166011 GCTGCACCCGCGATGAAC 62.166 66.667 8.23 0.00 42.97 3.18
425 426 4.393155 AGCTGCACCCGCGATGAA 62.393 61.111 8.23 0.00 42.97 2.57
428 429 4.827087 CTCAGCTGCACCCGCGAT 62.827 66.667 8.23 0.00 42.97 4.58
441 442 3.335356 ATTCGGTGCCCAGGCTCAG 62.335 63.158 10.58 7.38 42.51 3.35
442 443 3.329542 GATTCGGTGCCCAGGCTCA 62.330 63.158 10.58 0.00 42.51 4.26
443 444 2.514824 GATTCGGTGCCCAGGCTC 60.515 66.667 10.58 6.18 42.51 4.70
444 445 4.473520 CGATTCGGTGCCCAGGCT 62.474 66.667 10.58 0.00 42.51 4.58
451 452 3.898640 GACGACGCGATTCGGTGC 61.899 66.667 20.97 8.21 43.58 5.01
452 453 3.245315 GGACGACGCGATTCGGTG 61.245 66.667 20.97 2.43 43.58 4.94
453 454 3.437795 AGGACGACGCGATTCGGT 61.438 61.111 20.97 8.56 43.58 4.69
454 455 2.860690 TTCAGGACGACGCGATTCGG 62.861 60.000 20.97 5.61 43.58 4.30
455 456 0.866061 ATTCAGGACGACGCGATTCG 60.866 55.000 15.93 16.22 44.87 3.34
456 457 1.005975 CAATTCAGGACGACGCGATTC 60.006 52.381 15.93 5.36 0.00 2.52
457 458 0.999406 CAATTCAGGACGACGCGATT 59.001 50.000 15.93 0.00 0.00 3.34
458 459 0.172578 TCAATTCAGGACGACGCGAT 59.827 50.000 15.93 0.00 0.00 4.58
459 460 0.456142 CTCAATTCAGGACGACGCGA 60.456 55.000 15.93 0.00 0.00 5.87
460 461 0.456142 TCTCAATTCAGGACGACGCG 60.456 55.000 3.53 3.53 0.00 6.01
461 462 1.855360 GATCTCAATTCAGGACGACGC 59.145 52.381 0.00 0.00 0.00 5.19
462 463 2.099921 AGGATCTCAATTCAGGACGACG 59.900 50.000 0.00 0.00 0.00 5.12
463 464 3.810310 AGGATCTCAATTCAGGACGAC 57.190 47.619 0.00 0.00 0.00 4.34
464 465 4.956700 AGTAAGGATCTCAATTCAGGACGA 59.043 41.667 0.00 0.00 0.00 4.20
465 466 5.269505 AGTAAGGATCTCAATTCAGGACG 57.730 43.478 0.00 0.00 0.00 4.79
466 467 9.620259 AAATTAGTAAGGATCTCAATTCAGGAC 57.380 33.333 0.00 0.00 0.00 3.85
511 512 8.175716 GGAACTCGGTAAATAAAAATCAGAGTG 58.824 37.037 0.00 0.00 36.67 3.51
538 545 4.082125 ACCCAATACCTTGAAGAAGCAAG 58.918 43.478 0.00 0.00 43.74 4.01
560 567 9.087871 TCTTTAAATCCAAATCTCCAAACATGA 57.912 29.630 0.00 0.00 0.00 3.07
561 568 9.709495 TTCTTTAAATCCAAATCTCCAAACATG 57.291 29.630 0.00 0.00 0.00 3.21
572 579 9.487790 TTCGCTGATTTTTCTTTAAATCCAAAT 57.512 25.926 0.00 0.00 41.62 2.32
607 614 2.620779 CACTCAGTCAGTAGTGTCCG 57.379 55.000 0.00 0.00 38.62 4.79
652 660 1.222115 GACCGTGTGACCAAGTGAGC 61.222 60.000 0.00 0.00 0.00 4.26
673 681 2.032681 GAGTGGCTTGCCCGAACT 59.967 61.111 9.35 6.02 35.87 3.01
1049 1090 3.541713 CTAGGTCCAGCGGGAGGC 61.542 72.222 5.57 0.00 46.12 4.70
1305 1358 0.706433 AGGGGTTGACCATGAAGCAT 59.294 50.000 2.12 0.00 42.91 3.79
1698 1757 4.451150 TGTGGATCGCCGGTGCTC 62.451 66.667 11.05 10.69 36.79 4.26
1889 1948 5.440610 ACTCATTCTGTCCACCCATAATTC 58.559 41.667 0.00 0.00 0.00 2.17
1950 2009 1.362717 CACGGTCGACACCTTGACT 59.637 57.895 18.91 0.00 43.37 3.41
2110 2169 1.593469 GGAATAGACGCCGAAAGAAGC 59.407 52.381 0.00 0.00 0.00 3.86
2166 2225 1.508088 GCACCGCTTCCAGGAAATG 59.492 57.895 2.72 1.08 0.00 2.32
2251 2310 0.882927 TTGCATAGCGATAACGGGCC 60.883 55.000 0.00 0.00 40.15 5.80
2282 2341 3.329386 CATAGCATGGTCAGATAACCCG 58.671 50.000 0.00 0.00 38.65 5.28
2283 2342 3.679389 CCATAGCATGGTCAGATAACCC 58.321 50.000 0.00 0.00 45.54 4.11
2366 3591 3.830192 GCATTCCCGGCTTGCAGG 61.830 66.667 14.38 4.81 36.40 4.85
2501 3729 1.271054 CCACAGTAGCAGCAAACCTCT 60.271 52.381 0.00 0.00 0.00 3.69
2530 3762 4.554973 GCAGCAACACGATTTTAAGATCAC 59.445 41.667 6.78 0.00 0.00 3.06
2531 3763 4.455533 AGCAGCAACACGATTTTAAGATCA 59.544 37.500 6.78 0.00 0.00 2.92
2532 3764 4.974591 AGCAGCAACACGATTTTAAGATC 58.025 39.130 0.00 0.00 0.00 2.75
2533 3765 5.376854 AAGCAGCAACACGATTTTAAGAT 57.623 34.783 0.00 0.00 0.00 2.40
2542 3774 2.610433 CAGAGATAAGCAGCAACACGA 58.390 47.619 0.00 0.00 0.00 4.35
2560 3792 1.004044 AGAAAGAGACCACCATGCCAG 59.996 52.381 0.00 0.00 0.00 4.85
2568 3811 6.486993 ACAATAAAGACCAAGAAAGAGACCAC 59.513 38.462 0.00 0.00 0.00 4.16
2587 3830 3.772572 TGCTAGCTACAGGGTGACAATAA 59.227 43.478 17.23 0.00 0.00 1.40
2588 3831 3.371034 TGCTAGCTACAGGGTGACAATA 58.629 45.455 17.23 0.00 0.00 1.90
2596 3839 4.184629 CAACTAACTTGCTAGCTACAGGG 58.815 47.826 17.23 5.13 0.00 4.45
2611 3854 7.369803 TGAAGAATGAAGATGAGCAACTAAC 57.630 36.000 0.00 0.00 0.00 2.34
2613 3856 6.091305 CGTTGAAGAATGAAGATGAGCAACTA 59.909 38.462 0.00 0.00 33.07 2.24
2617 3860 4.318332 ACGTTGAAGAATGAAGATGAGCA 58.682 39.130 0.00 0.00 0.00 4.26
2620 3863 4.931601 CCTGACGTTGAAGAATGAAGATGA 59.068 41.667 0.00 0.00 0.00 2.92
2622 3865 4.899502 ACCTGACGTTGAAGAATGAAGAT 58.100 39.130 0.00 0.00 0.00 2.40
2624 3867 5.230942 ACTACCTGACGTTGAAGAATGAAG 58.769 41.667 0.00 0.00 0.00 3.02
2625 3868 5.209818 ACTACCTGACGTTGAAGAATGAA 57.790 39.130 0.00 0.00 0.00 2.57
2626 3869 4.866508 ACTACCTGACGTTGAAGAATGA 57.133 40.909 0.00 0.00 0.00 2.57
2627 3870 5.465390 TGAAACTACCTGACGTTGAAGAATG 59.535 40.000 0.00 0.00 0.00 2.67
2628 3871 5.607477 TGAAACTACCTGACGTTGAAGAAT 58.393 37.500 0.00 0.00 0.00 2.40
2629 3872 5.013568 TGAAACTACCTGACGTTGAAGAA 57.986 39.130 0.00 0.00 0.00 2.52
2630 3873 4.659111 TGAAACTACCTGACGTTGAAGA 57.341 40.909 0.00 0.00 0.00 2.87
2631 3874 4.377431 GCATGAAACTACCTGACGTTGAAG 60.377 45.833 0.00 0.00 0.00 3.02
2632 3875 3.496884 GCATGAAACTACCTGACGTTGAA 59.503 43.478 0.00 0.00 0.00 2.69
2633 3876 3.064207 GCATGAAACTACCTGACGTTGA 58.936 45.455 0.00 0.00 0.00 3.18
2634 3877 3.067106 AGCATGAAACTACCTGACGTTG 58.933 45.455 0.00 0.00 0.00 4.10
2645 3888 2.309613 TGGCAACTTGAGCATGAAACT 58.690 42.857 0.00 0.00 37.61 2.66
2719 3962 5.420725 TGTCTTGTATCTGTATGGCACTT 57.579 39.130 0.00 0.00 0.00 3.16
2745 3988 1.154225 GCCTTGAACACATTCGGCG 60.154 57.895 0.00 0.00 37.69 6.46
2761 4004 1.168714 AGACGAAATTCAGCAAGGCC 58.831 50.000 0.00 0.00 0.00 5.19
2770 4013 2.844804 CGAGTCGGTGTAGACGAAATTC 59.155 50.000 4.10 0.00 45.26 2.17
2771 4014 2.485426 TCGAGTCGGTGTAGACGAAATT 59.515 45.455 13.54 0.00 45.26 1.82
2805 4048 1.301293 CTGCTTCCCCTTCCACCTC 59.699 63.158 0.00 0.00 0.00 3.85
2806 4049 2.234296 CCTGCTTCCCCTTCCACCT 61.234 63.158 0.00 0.00 0.00 4.00
2808 4051 2.356667 CCCTGCTTCCCCTTCCAC 59.643 66.667 0.00 0.00 0.00 4.02
2809 4052 2.941025 CCCCTGCTTCCCCTTCCA 60.941 66.667 0.00 0.00 0.00 3.53
2810 4053 2.216782 CTTCCCCTGCTTCCCCTTCC 62.217 65.000 0.00 0.00 0.00 3.46
2811 4054 1.304617 CTTCCCCTGCTTCCCCTTC 59.695 63.158 0.00 0.00 0.00 3.46
2812 4055 1.466186 ACTTCCCCTGCTTCCCCTT 60.466 57.895 0.00 0.00 0.00 3.95
2813 4056 1.925972 GACTTCCCCTGCTTCCCCT 60.926 63.158 0.00 0.00 0.00 4.79
2814 4057 2.677848 GACTTCCCCTGCTTCCCC 59.322 66.667 0.00 0.00 0.00 4.81
2815 4058 2.269241 CGACTTCCCCTGCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
2816 4059 2.269241 CCGACTTCCCCTGCTTCC 59.731 66.667 0.00 0.00 0.00 3.46
2817 4060 2.436824 GCCGACTTCCCCTGCTTC 60.437 66.667 0.00 0.00 0.00 3.86
2818 4061 4.394712 CGCCGACTTCCCCTGCTT 62.395 66.667 0.00 0.00 0.00 3.91
2880 4123 5.636965 CAGGAACAAGAGTCACAGTATCAAG 59.363 44.000 0.00 0.00 0.00 3.02
2895 4138 4.013267 AGTGAGACATTCCAGGAACAAG 57.987 45.455 3.18 0.03 0.00 3.16
2917 4160 6.880484 TGAGATTTACACACGGTACCAATAT 58.120 36.000 13.54 0.00 0.00 1.28
2927 4170 6.830736 TCAATGAACATGAGATTTACACACG 58.169 36.000 0.00 0.00 0.00 4.49
2946 4193 1.338973 CCGGGGATTGCTTGATCAATG 59.661 52.381 8.96 4.68 36.85 2.82
2981 4228 4.576879 AGATAGAAAACAACCCTCGGTTC 58.423 43.478 0.00 0.00 43.05 3.62
2989 4236 7.379750 ACAGTGAGAGTAGATAGAAAACAACC 58.620 38.462 0.00 0.00 0.00 3.77
2995 4242 7.612244 ACAGCTTACAGTGAGAGTAGATAGAAA 59.388 37.037 0.00 0.00 0.00 2.52
2998 4245 6.935741 ACAGCTTACAGTGAGAGTAGATAG 57.064 41.667 0.00 0.00 0.00 2.08
3037 4285 2.991866 GTGTCTTGGTAACTCGTTAGCC 59.008 50.000 14.29 8.34 41.42 3.93
3044 4292 4.015872 TGGGATTGTGTCTTGGTAACTC 57.984 45.455 0.00 0.00 37.61 3.01
3057 4305 1.203162 TGTGCTTGGGAATGGGATTGT 60.203 47.619 0.00 0.00 0.00 2.71
3061 4309 0.409092 ATGTGTGCTTGGGAATGGGA 59.591 50.000 0.00 0.00 0.00 4.37
3062 4310 0.533491 CATGTGTGCTTGGGAATGGG 59.467 55.000 0.00 0.00 0.00 4.00
3063 4311 1.548081 TCATGTGTGCTTGGGAATGG 58.452 50.000 0.00 0.00 0.00 3.16
3064 4312 2.559668 AGTTCATGTGTGCTTGGGAATG 59.440 45.455 0.00 0.00 0.00 2.67
3065 4313 2.559668 CAGTTCATGTGTGCTTGGGAAT 59.440 45.455 0.00 0.00 0.00 3.01
3066 4314 1.955778 CAGTTCATGTGTGCTTGGGAA 59.044 47.619 0.00 0.00 0.00 3.97
3093 4341 1.617850 CTTGGGCAAATGCAACACCTA 59.382 47.619 7.80 0.00 44.36 3.08
3094 4342 0.393820 CTTGGGCAAATGCAACACCT 59.606 50.000 7.80 0.00 44.36 4.00
3103 4352 2.048603 GGAGCTCGCTTGGGCAAAT 61.049 57.895 7.83 0.00 38.60 2.32
3119 4368 3.380320 CCGTAGCATGACGATATATGGGA 59.620 47.826 8.40 0.00 45.82 4.37
3120 4369 3.706698 CCGTAGCATGACGATATATGGG 58.293 50.000 8.40 0.00 45.82 4.00
3121 4370 3.116300 GCCGTAGCATGACGATATATGG 58.884 50.000 8.40 0.00 45.82 2.74
3184 4433 1.078285 GGAGACGTCCGAGGAGTCT 60.078 63.158 13.01 17.80 46.61 3.24
3185 4434 3.500222 GGAGACGTCCGAGGAGTC 58.500 66.667 13.01 0.61 31.37 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.