Multiple sequence alignment - TraesCS1B01G427400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G427400 chr1B 100.000 6593 0 0 1 6593 652780869 652787461 0.000000e+00 12176.0
1 TraesCS1B01G427400 chr1B 90.458 262 18 4 6187 6442 652786282 652786542 8.190000e-89 339.0
2 TraesCS1B01G427400 chr1B 90.458 262 18 4 5414 5674 652787055 652787310 8.190000e-89 339.0
3 TraesCS1B01G427400 chr1B 84.030 263 35 7 3703 3962 810530 810272 5.110000e-61 246.0
4 TraesCS1B01G427400 chr1A 90.489 3480 189 66 809 4233 563818368 563821760 0.000000e+00 4462.0
5 TraesCS1B01G427400 chr1A 92.373 2242 109 25 4239 6436 563821802 563824025 0.000000e+00 3136.0
6 TraesCS1B01G427400 chr1A 97.273 220 4 2 595 813 217757521 217757739 8.070000e-99 372.0
7 TraesCS1B01G427400 chr1A 90.566 265 16 3 6187 6442 563823001 563823265 6.330000e-90 342.0
8 TraesCS1B01G427400 chr1A 92.149 242 11 2 361 594 563818131 563818372 1.060000e-87 335.0
9 TraesCS1B01G427400 chr1A 89.453 256 20 3 5414 5668 563823776 563824025 3.840000e-82 316.0
10 TraesCS1B01G427400 chr1A 90.805 174 16 0 6420 6593 563824810 563824983 3.980000e-57 233.0
11 TraesCS1B01G427400 chr1A 84.772 197 7 8 1 192 563817494 563817672 6.790000e-40 176.0
12 TraesCS1B01G427400 chr1D 89.694 3231 194 74 809 3963 470219515 470222682 0.000000e+00 3993.0
13 TraesCS1B01G427400 chr1D 91.571 2693 140 40 3961 6593 470222853 470225518 0.000000e+00 3635.0
14 TraesCS1B01G427400 chr1D 92.607 257 14 3 6187 6438 470224335 470224591 1.350000e-96 364.0
15 TraesCS1B01G427400 chr1D 89.764 254 17 4 5424 5674 470225120 470225367 3.840000e-82 316.0
16 TraesCS1B01G427400 chr1D 87.160 257 28 3 3 258 470227029 470227281 3.010000e-73 287.0
17 TraesCS1B01G427400 chr1D 94.149 188 8 1 411 598 470219336 470219520 3.890000e-72 283.0
18 TraesCS1B01G427400 chr3B 97.297 222 5 1 596 816 49950064 49949843 6.240000e-100 375.0
19 TraesCS1B01G427400 chr3B 96.413 223 7 1 595 816 795441343 795441121 3.760000e-97 366.0
20 TraesCS1B01G427400 chr3B 96.347 219 7 1 596 813 235884226 235884008 6.290000e-95 359.0
21 TraesCS1B01G427400 chr3B 95.909 220 8 1 596 814 523158161 523158380 8.130000e-94 355.0
22 TraesCS1B01G427400 chr3B 88.038 209 22 2 1471 1679 438381873 438381668 1.840000e-60 244.0
23 TraesCS1B01G427400 chr5B 97.706 218 4 1 595 811 146825611 146825828 2.240000e-99 374.0
24 TraesCS1B01G427400 chr5B 97.674 215 5 0 599 813 146826760 146826546 2.900000e-98 370.0
25 TraesCS1B01G427400 chr5B 95.238 42 2 0 6551 6592 382781922 382781881 4.270000e-07 67.6
26 TraesCS1B01G427400 chr5D 95.154 227 10 1 593 818 115404101 115404327 2.260000e-94 357.0
27 TraesCS1B01G427400 chr2A 95.909 220 8 1 596 814 777253139 777252920 8.130000e-94 355.0
28 TraesCS1B01G427400 chr2A 85.932 263 34 3 3702 3962 69311217 69310956 1.810000e-70 278.0
29 TraesCS1B01G427400 chr2A 81.041 269 46 4 3689 3955 745215384 745215119 6.700000e-50 209.0
30 TraesCS1B01G427400 chr2A 79.268 164 28 6 1478 1638 53782753 53782913 6.990000e-20 110.0
31 TraesCS1B01G427400 chr7B 84.099 283 39 5 3684 3963 157803255 157802976 1.090000e-67 268.0
32 TraesCS1B01G427400 chr7D 84.411 263 34 6 3703 3963 492847371 492847628 1.100000e-62 252.0
33 TraesCS1B01G427400 chr7D 95.000 40 2 0 6551 6590 451976625 451976586 5.520000e-06 63.9
34 TraesCS1B01G427400 chr3A 87.054 224 26 3 1468 1690 465225756 465225977 3.950000e-62 250.0
35 TraesCS1B01G427400 chr3D 86.878 221 26 3 1471 1690 339476220 339476002 1.840000e-60 244.0
36 TraesCS1B01G427400 chr3D 95.238 42 2 0 6551 6592 63238073 63238032 4.270000e-07 67.6
37 TraesCS1B01G427400 chr2B 86.301 219 29 1 3720 3938 105858081 105857864 3.070000e-58 237.0
38 TraesCS1B01G427400 chr2B 79.268 164 28 6 1478 1638 81755685 81755845 6.990000e-20 110.0
39 TraesCS1B01G427400 chr2B 100.000 41 0 0 6552 6592 182367513 182367553 7.090000e-10 76.8
40 TraesCS1B01G427400 chr2B 97.500 40 1 0 6552 6591 765259732 765259693 1.190000e-07 69.4
41 TraesCS1B01G427400 chr4B 83.794 253 32 8 3700 3952 541907423 541907180 1.430000e-56 231.0
42 TraesCS1B01G427400 chr2D 79.878 164 27 6 1478 1638 52227343 52227503 1.500000e-21 115.0
43 TraesCS1B01G427400 chr4D 78.788 165 25 10 1478 1637 306795500 306795659 1.170000e-17 102.0
44 TraesCS1B01G427400 chr4D 97.368 38 1 0 6552 6589 474330729 474330766 1.530000e-06 65.8
45 TraesCS1B01G427400 chr4A 100.000 40 0 0 6552 6591 626304810 626304771 2.550000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G427400 chr1B 652780869 652787461 6592 False 4284.666667 12176 93.638667 1 6593 3 chr1B.!!$F1 6592
1 TraesCS1B01G427400 chr1A 563817494 563824983 7489 False 1285.714286 4462 90.086714 1 6593 7 chr1A.!!$F2 6592
2 TraesCS1B01G427400 chr1D 470219336 470227281 7945 False 1479.666667 3993 90.824167 3 6593 6 chr1D.!!$F1 6590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 145 0.757188 ATGCCTCCGTGGACTCTAGG 60.757 60.0 0.00 0.0 38.35 3.02 F
1040 1354 0.239347 CGCCATTATAAGCAGCAGCC 59.761 55.0 0.00 0.0 43.56 4.85 F
2090 2443 0.044855 AGCTGGTAACCTCCATCCCT 59.955 55.0 0.00 0.0 36.84 4.20 F
2622 2979 0.449388 GCATTGCTACCTGCTCACAC 59.551 55.0 0.16 0.0 43.37 3.82 F
4236 4873 0.589708 CATCCATCATTGTGCGCGAT 59.410 50.0 12.10 0.0 0.00 4.58 F
5097 5762 0.036388 CCTCGCCTTCACTAGCCAAA 60.036 55.0 0.00 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1128 1442 0.382515 AAGATCGAGGTAGCTGCGAC 59.617 55.000 15.31 4.17 36.83 5.19 R
2891 3254 0.365523 GTACTGCGTATGTGTGTGCG 59.634 55.000 0.00 0.00 0.00 5.34 R
2892 3255 1.424403 TGTACTGCGTATGTGTGTGC 58.576 50.000 0.00 0.00 0.00 4.57 R
4441 5085 0.741221 GCCGTCGCTTCAATCCTCTT 60.741 55.000 0.00 0.00 0.00 2.85 R
5905 6613 1.297689 GAGCAGCATGACCACCTCA 59.702 57.895 0.00 0.00 39.69 3.86 R
6531 8044 1.067776 ACTTGCTAGTACTTCGCGCTT 60.068 47.619 5.56 0.00 31.21 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 8.262933 GCTAGGAAAACATAGGGTCTTACTAAA 58.737 37.037 0.00 0.00 0.00 1.85
66 68 7.881751 AGGAAAACATAGGGTCTTACTAAACAC 59.118 37.037 0.00 0.00 0.00 3.32
70 72 6.932947 ACATAGGGTCTTACTAAACACAGTC 58.067 40.000 0.00 0.00 0.00 3.51
71 73 6.495872 ACATAGGGTCTTACTAAACACAGTCA 59.504 38.462 0.00 0.00 0.00 3.41
72 74 5.881923 AGGGTCTTACTAAACACAGTCAA 57.118 39.130 0.00 0.00 0.00 3.18
73 75 6.243216 AGGGTCTTACTAAACACAGTCAAA 57.757 37.500 0.00 0.00 0.00 2.69
74 76 6.838382 AGGGTCTTACTAAACACAGTCAAAT 58.162 36.000 0.00 0.00 0.00 2.32
75 77 6.935208 AGGGTCTTACTAAACACAGTCAAATC 59.065 38.462 0.00 0.00 0.00 2.17
76 78 6.708949 GGGTCTTACTAAACACAGTCAAATCA 59.291 38.462 0.00 0.00 0.00 2.57
77 79 7.390718 GGGTCTTACTAAACACAGTCAAATCAT 59.609 37.037 0.00 0.00 0.00 2.45
78 80 9.431887 GGTCTTACTAAACACAGTCAAATCATA 57.568 33.333 0.00 0.00 0.00 2.15
140 145 0.757188 ATGCCTCCGTGGACTCTAGG 60.757 60.000 0.00 0.00 38.35 3.02
151 156 5.374921 CGTGGACTCTAGGATCTTACCTTA 58.625 45.833 0.00 0.00 41.00 2.69
185 190 5.860941 TGTAAAATTCCTGCCTTTCAACA 57.139 34.783 0.00 0.00 0.00 3.33
206 255 9.330063 TCAACATTGAAAGTGAGATCATATACC 57.670 33.333 0.00 0.00 33.55 2.73
207 256 9.334947 CAACATTGAAAGTGAGATCATATACCT 57.665 33.333 0.00 0.00 0.00 3.08
228 277 9.955102 ATACCTTATTTTCCGTCTCTACTTTTT 57.045 29.630 0.00 0.00 0.00 1.94
229 278 8.320396 ACCTTATTTTCCGTCTCTACTTTTTC 57.680 34.615 0.00 0.00 0.00 2.29
230 279 7.935210 ACCTTATTTTCCGTCTCTACTTTTTCA 59.065 33.333 0.00 0.00 0.00 2.69
231 280 8.228464 CCTTATTTTCCGTCTCTACTTTTTCAC 58.772 37.037 0.00 0.00 0.00 3.18
232 281 8.897872 TTATTTTCCGTCTCTACTTTTTCACT 57.102 30.769 0.00 0.00 0.00 3.41
233 282 6.598753 TTTTCCGTCTCTACTTTTTCACTG 57.401 37.500 0.00 0.00 0.00 3.66
237 286 4.551388 CGTCTCTACTTTTTCACTGCTCT 58.449 43.478 0.00 0.00 0.00 4.09
239 288 6.326375 CGTCTCTACTTTTTCACTGCTCTAT 58.674 40.000 0.00 0.00 0.00 1.98
254 303 5.241728 ACTGCTCTATTCCTTTGAACCAAAC 59.758 40.000 0.00 0.00 32.13 2.93
258 307 6.308371 TCTATTCCTTTGAACCAAACGAAC 57.692 37.500 0.00 0.00 33.71 3.95
259 308 4.993029 ATTCCTTTGAACCAAACGAACA 57.007 36.364 0.00 0.00 33.71 3.18
263 312 5.344884 TCCTTTGAACCAAACGAACAAATC 58.655 37.500 0.00 0.00 31.69 2.17
294 346 8.809468 AGAGAAAATTTTCCCAGTTCTATACC 57.191 34.615 24.01 0.00 37.92 2.73
312 364 8.153221 TCTATACCTTTCCTATGAACCAAACA 57.847 34.615 0.00 0.00 0.00 2.83
319 371 3.589735 TCCTATGAACCAAACAAGCCCTA 59.410 43.478 0.00 0.00 0.00 3.53
354 406 7.968405 GGTTTGACCATGTGTTACTTTATCATC 59.032 37.037 0.00 0.00 38.42 2.92
356 408 7.609760 TGACCATGTGTTACTTTATCATCAC 57.390 36.000 0.00 0.00 0.00 3.06
382 681 6.467677 ACTAATCAGTATGCCCACATCATAC 58.532 40.000 5.30 5.30 43.93 2.39
493 795 8.763984 AGGCAATCTAGAAAGAATCAAATCAT 57.236 30.769 0.00 0.00 34.73 2.45
494 796 8.848182 AGGCAATCTAGAAAGAATCAAATCATC 58.152 33.333 0.00 0.00 34.73 2.92
511 813 3.165071 TCATCAGTGAGTGCACCTTCTA 58.835 45.455 14.63 0.00 46.32 2.10
521 823 4.666512 AGTGCACCTTCTACCATTTCAAT 58.333 39.130 14.63 0.00 0.00 2.57
537 839 2.412870 TCAATACCTCAACAGTGTGCG 58.587 47.619 0.00 0.00 0.00 5.34
579 886 5.314718 AGCATCCATCCATGAGTAATGAA 57.685 39.130 0.00 0.00 38.72 2.57
594 904 8.734218 TGAGTAATGAACAGTAGGACTACTAG 57.266 38.462 11.37 8.87 43.98 2.57
595 905 8.327271 TGAGTAATGAACAGTAGGACTACTAGT 58.673 37.037 11.37 0.00 43.98 2.57
596 906 9.829507 GAGTAATGAACAGTAGGACTACTAGTA 57.170 37.037 11.37 1.89 43.98 1.82
597 907 9.612066 AGTAATGAACAGTAGGACTACTAGTAC 57.388 37.037 11.37 9.64 43.98 2.73
598 908 9.612066 GTAATGAACAGTAGGACTACTAGTACT 57.388 37.037 11.37 6.21 43.98 2.73
605 915 4.953940 AGGACTACTAGTACTACCTCCG 57.046 50.000 0.00 0.00 37.71 4.63
606 916 4.294347 AGGACTACTAGTACTACCTCCGT 58.706 47.826 0.00 0.00 37.71 4.69
607 917 4.343814 AGGACTACTAGTACTACCTCCGTC 59.656 50.000 0.00 2.60 37.71 4.79
608 918 4.502431 GGACTACTAGTACTACCTCCGTCC 60.502 54.167 14.41 14.41 0.00 4.79
609 919 3.389656 ACTACTAGTACTACCTCCGTCCC 59.610 52.174 0.00 0.00 0.00 4.46
610 920 1.139853 ACTAGTACTACCTCCGTCCCG 59.860 57.143 0.00 0.00 0.00 5.14
621 931 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
622 932 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
623 933 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
624 934 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
625 935 3.431207 CCGTCCCGGTGTATAAGTCATTT 60.431 47.826 0.00 0.00 42.73 2.32
626 936 3.554324 CGTCCCGGTGTATAAGTCATTTG 59.446 47.826 0.00 0.00 0.00 2.32
627 937 3.311596 GTCCCGGTGTATAAGTCATTTGC 59.688 47.826 0.00 0.00 0.00 3.68
628 938 2.286833 CCCGGTGTATAAGTCATTTGCG 59.713 50.000 0.00 0.00 0.00 4.85
629 939 2.933906 CCGGTGTATAAGTCATTTGCGT 59.066 45.455 0.00 0.00 0.00 5.24
630 940 4.114073 CCGGTGTATAAGTCATTTGCGTA 58.886 43.478 0.00 0.00 0.00 4.42
631 941 4.208460 CCGGTGTATAAGTCATTTGCGTAG 59.792 45.833 0.00 0.00 0.00 3.51
632 942 4.802039 CGGTGTATAAGTCATTTGCGTAGT 59.198 41.667 0.00 0.00 0.00 2.73
633 943 5.290158 CGGTGTATAAGTCATTTGCGTAGTT 59.710 40.000 0.00 0.00 0.00 2.24
634 944 6.183360 CGGTGTATAAGTCATTTGCGTAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
635 945 7.524065 GGTGTATAAGTCATTTGCGTAGTTTT 58.476 34.615 0.00 0.00 0.00 2.43
636 946 8.658609 GGTGTATAAGTCATTTGCGTAGTTTTA 58.341 33.333 0.00 0.00 0.00 1.52
637 947 9.685005 GTGTATAAGTCATTTGCGTAGTTTTAG 57.315 33.333 0.00 0.00 0.00 1.85
638 948 9.642327 TGTATAAGTCATTTGCGTAGTTTTAGA 57.358 29.630 0.00 0.00 0.00 2.10
641 951 6.332504 AGTCATTTGCGTAGTTTTAGATCG 57.667 37.500 0.00 0.00 0.00 3.69
642 952 6.097356 AGTCATTTGCGTAGTTTTAGATCGA 58.903 36.000 0.00 0.00 0.00 3.59
643 953 6.034683 AGTCATTTGCGTAGTTTTAGATCGAC 59.965 38.462 0.00 0.00 0.00 4.20
644 954 5.865013 TCATTTGCGTAGTTTTAGATCGACA 59.135 36.000 0.00 0.00 0.00 4.35
645 955 6.366604 TCATTTGCGTAGTTTTAGATCGACAA 59.633 34.615 0.00 0.00 0.00 3.18
646 956 6.715344 TTTGCGTAGTTTTAGATCGACAAT 57.285 33.333 0.00 0.00 0.00 2.71
647 957 6.715344 TTGCGTAGTTTTAGATCGACAATT 57.285 33.333 0.00 0.00 0.00 2.32
648 958 6.715344 TGCGTAGTTTTAGATCGACAATTT 57.285 33.333 0.00 0.00 0.00 1.82
649 959 7.815398 TGCGTAGTTTTAGATCGACAATTTA 57.185 32.000 0.00 0.00 0.00 1.40
650 960 8.242085 TGCGTAGTTTTAGATCGACAATTTAA 57.758 30.769 0.00 0.00 0.00 1.52
651 961 8.164153 TGCGTAGTTTTAGATCGACAATTTAAC 58.836 33.333 0.00 0.00 0.00 2.01
652 962 8.378421 GCGTAGTTTTAGATCGACAATTTAACT 58.622 33.333 0.00 0.00 0.00 2.24
770 1080 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
771 1081 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
773 1083 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
774 1084 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
775 1085 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
776 1086 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
777 1087 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
778 1088 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
779 1089 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
780 1090 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
781 1091 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
782 1092 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
783 1093 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
784 1094 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
785 1095 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
786 1096 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
787 1097 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
788 1098 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
789 1099 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
790 1100 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
791 1101 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
792 1102 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
793 1103 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
794 1104 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
795 1105 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
796 1106 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
797 1107 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
798 1108 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
799 1109 2.097954 ACGCGAATGACTTATACACCGA 59.902 45.455 15.93 0.00 0.00 4.69
800 1110 2.719556 CGCGAATGACTTATACACCGAG 59.280 50.000 0.00 0.00 0.00 4.63
801 1111 3.547413 CGCGAATGACTTATACACCGAGA 60.547 47.826 0.00 0.00 0.00 4.04
802 1112 3.729716 GCGAATGACTTATACACCGAGAC 59.270 47.826 0.00 0.00 0.00 3.36
803 1113 3.966844 CGAATGACTTATACACCGAGACG 59.033 47.826 0.00 0.00 0.00 4.18
1037 1351 1.308047 CCACGCCATTATAAGCAGCA 58.692 50.000 0.00 0.00 0.00 4.41
1040 1354 0.239347 CGCCATTATAAGCAGCAGCC 59.761 55.000 0.00 0.00 43.56 4.85
1045 1359 1.119684 TTATAAGCAGCAGCCGAGGA 58.880 50.000 0.00 0.00 43.56 3.71
1100 1414 0.613777 TCTTCTTCTTCTTCCCCGGC 59.386 55.000 0.00 0.00 0.00 6.13
1102 1416 1.848886 TTCTTCTTCTTCCCCGGCCC 61.849 60.000 0.00 0.00 0.00 5.80
1105 1419 4.426313 CTTCTTCCCCGGCCCACC 62.426 72.222 0.00 0.00 0.00 4.61
1125 1439 2.683867 CCGTTCCTCTACAGATCGAAGT 59.316 50.000 0.00 0.00 0.00 3.01
1127 1441 4.024725 CCGTTCCTCTACAGATCGAAGTAG 60.025 50.000 13.71 13.71 39.19 2.57
1128 1442 4.024725 CGTTCCTCTACAGATCGAAGTAGG 60.025 50.000 17.54 10.23 38.54 3.18
1138 1483 0.731417 TCGAAGTAGGTCGCAGCTAC 59.269 55.000 14.00 14.00 46.47 3.58
1147 1492 0.382515 GTCGCAGCTACCTCGATCTT 59.617 55.000 0.00 0.00 34.61 2.40
1253 1598 1.898574 GAGCAACACCCACACCAGG 60.899 63.158 0.00 0.00 0.00 4.45
1254 1599 2.123897 GCAACACCCACACCAGGT 60.124 61.111 0.00 0.00 38.48 4.00
1379 1726 3.451526 CATGATCTGTGTGCGTGTAGAT 58.548 45.455 0.00 0.00 32.87 1.98
1380 1727 2.879826 TGATCTGTGTGCGTGTAGATG 58.120 47.619 0.00 0.00 30.49 2.90
1409 1756 2.558359 GTTTGTTGGGGAGTTGATCTGG 59.442 50.000 0.00 0.00 0.00 3.86
1412 1759 1.351017 GTTGGGGAGTTGATCTGGTCA 59.649 52.381 0.00 0.00 34.25 4.02
1451 1798 2.266055 GGGCTTGACCAGGAGACG 59.734 66.667 0.00 0.00 42.05 4.18
1463 1810 2.283529 GGAGACGACAAGGAGCCCA 61.284 63.158 0.00 0.00 0.00 5.36
1475 1822 2.203938 AGCCCAGGGGAGACGAAA 60.204 61.111 7.91 0.00 37.50 3.46
1550 1897 4.754667 GGCGTCGTCAACCCTCCC 62.755 72.222 0.00 0.00 0.00 4.30
1750 2097 1.828660 CGTCCCTAGCGGTGAGGAT 60.829 63.158 10.19 0.00 35.99 3.24
2031 2384 2.493675 CTCTACTACCAGCTGCAGAACA 59.506 50.000 20.43 0.00 0.00 3.18
2040 2393 1.180029 GCTGCAGAACAATCCCATGT 58.820 50.000 20.43 0.00 34.24 3.21
2086 2439 1.522569 GCGAGCTGGTAACCTCCAT 59.477 57.895 0.00 0.00 36.84 3.41
2090 2443 0.044855 AGCTGGTAACCTCCATCCCT 59.955 55.000 0.00 0.00 36.84 4.20
2095 2448 1.204146 GTAACCTCCATCCCTGAGCA 58.796 55.000 0.00 0.00 0.00 4.26
2159 2512 4.711949 CTGCCAGCCACCGAGCTT 62.712 66.667 0.00 0.00 42.61 3.74
2261 2614 3.740128 CTCGGCGTTAGGGCAGCAT 62.740 63.158 6.85 0.00 42.43 3.79
2284 2637 1.506718 TCGTGGACGACATGAGCTC 59.493 57.895 6.82 6.82 44.22 4.09
2330 2683 1.268539 GGCCAGTTCAACTTCAACGTG 60.269 52.381 0.00 0.00 0.00 4.49
2387 2740 1.250328 TTAAGGACGACGAGAAGGCA 58.750 50.000 0.00 0.00 0.00 4.75
2539 2892 3.612860 GGTACTACGCTCAACTGTTCATG 59.387 47.826 0.00 0.00 0.00 3.07
2598 2955 7.255555 CGTTTTCATCATTCCATCCATAATCCA 60.256 37.037 0.00 0.00 0.00 3.41
2622 2979 0.449388 GCATTGCTACCTGCTCACAC 59.551 55.000 0.16 0.00 43.37 3.82
2643 3005 3.443329 ACACGTACGGTACACCATGATAA 59.557 43.478 21.06 0.00 35.14 1.75
2648 3010 5.521010 CGTACGGTACACCATGATAATTTGT 59.479 40.000 17.69 0.00 35.14 2.83
2736 3099 1.300971 TGCAAAGCTTGGCTCTAGCG 61.301 55.000 25.85 0.00 43.37 4.26
2761 3124 3.490348 CTTGACACCAATGGAGAAAGGT 58.510 45.455 6.16 0.00 33.91 3.50
2783 3146 3.003480 GAGTACTTGCCACTTCCATCAC 58.997 50.000 0.00 0.00 0.00 3.06
2827 3190 3.072211 TCGATAGATTAGCACGGACGAT 58.928 45.455 0.00 0.00 42.67 3.73
2849 3212 1.065491 ACATGTCTTTCCCGCTGCATA 60.065 47.619 0.00 0.00 0.00 3.14
2850 3213 1.600957 CATGTCTTTCCCGCTGCATAG 59.399 52.381 0.00 0.00 0.00 2.23
2851 3214 0.744414 TGTCTTTCCCGCTGCATAGC 60.744 55.000 0.00 0.00 46.62 2.97
2865 3228 4.297510 CTGCATAGCACTAGAGTAGCTTG 58.702 47.826 0.00 9.79 39.68 4.01
2891 3254 2.611751 TCATTGCATGCATGGTACGTAC 59.388 45.455 27.34 17.56 0.00 3.67
2892 3255 1.003108 TTGCATGCATGGTACGTACG 58.997 50.000 27.34 15.01 0.00 3.67
2893 3256 1.275657 GCATGCATGGTACGTACGC 59.724 57.895 27.34 16.65 0.00 4.42
2894 3257 1.425267 GCATGCATGGTACGTACGCA 61.425 55.000 27.34 23.01 36.95 5.24
2905 3268 1.339134 CGTACGCACACACATACGC 59.661 57.895 0.52 0.00 34.62 4.42
3152 3519 3.514645 CCAAAATATTGTGAGCTGGTGC 58.485 45.455 7.23 0.00 34.60 5.01
3232 3599 6.198687 TGCGTGTACTTCATTTTCTTTTCTG 58.801 36.000 0.00 0.00 0.00 3.02
3367 3764 5.811100 AGTTTAGGCGAAAATCTGCTAGTAC 59.189 40.000 0.00 0.00 0.00 2.73
3376 3773 7.376601 GCGAAAATCTGCTAGTACTAGTAGTTC 59.623 40.741 33.59 28.65 43.48 3.01
3380 3777 6.680874 TCTGCTAGTACTAGTAGTTCAAGC 57.319 41.667 33.59 20.06 43.48 4.01
3415 3817 7.255625 GCAAAAGAAGAAAAAGATGGGACTACT 60.256 37.037 0.00 0.00 0.00 2.57
3442 3844 2.892852 ACAAATTAAGCTCTGCCTTGCA 59.107 40.909 0.00 0.00 36.92 4.08
3466 3868 5.659971 AGGATTCTAAAAACGTAGGCCTAGA 59.340 40.000 14.38 2.60 0.00 2.43
3467 3869 5.752472 GGATTCTAAAAACGTAGGCCTAGAC 59.248 44.000 14.38 3.71 0.00 2.59
3473 3877 2.181954 ACGTAGGCCTAGACGGATAG 57.818 55.000 27.23 9.18 43.32 2.08
3478 3882 0.750850 GGCCTAGACGGATAGCACAA 59.249 55.000 0.00 0.00 33.16 3.33
3494 3899 7.446625 GGATAGCACAAGAACATGATAGGAATT 59.553 37.037 0.00 0.00 0.00 2.17
3495 3900 9.494271 GATAGCACAAGAACATGATAGGAATTA 57.506 33.333 0.00 0.00 0.00 1.40
3496 3901 9.851686 ATAGCACAAGAACATGATAGGAATTAA 57.148 29.630 0.00 0.00 0.00 1.40
3497 3902 8.757982 AGCACAAGAACATGATAGGAATTAAT 57.242 30.769 0.00 0.00 0.00 1.40
3523 3931 5.554636 GCGAGCACAATATATGATAGTTGC 58.445 41.667 0.00 0.00 0.00 4.17
3524 3932 5.120674 GCGAGCACAATATATGATAGTTGCA 59.879 40.000 0.00 0.00 0.00 4.08
3526 3934 7.232300 CGAGCACAATATATGATAGTTGCAAG 58.768 38.462 0.00 0.00 0.00 4.01
3694 4102 8.954950 TTTTCTCAATAGGAATGCAAAACAAA 57.045 26.923 0.00 0.00 0.00 2.83
3758 4166 3.944422 TTGTCTCGAGTCAAACTTTGC 57.056 42.857 20.38 0.00 0.00 3.68
3768 4176 5.516339 CGAGTCAAACTTTGCAAACTTTGAT 59.484 36.000 31.56 24.34 35.08 2.57
3777 4185 8.770438 ACTTTGCAAACTTTGATCAACTTTAA 57.230 26.923 8.05 0.00 0.00 1.52
3817 4225 3.562141 TCGCCAATACCAAATCAATACCG 59.438 43.478 0.00 0.00 0.00 4.02
3888 4296 9.864034 ATTATGAAAGTATAGATTGTTTTCGCG 57.136 29.630 0.00 0.00 32.01 5.87
3901 4309 2.748461 TTTCGCGAAACTTGGTCAAG 57.252 45.000 29.22 8.97 43.79 3.02
3939 4347 5.200483 ACTTAGGCCAAAGCTAAATATGCA 58.800 37.500 5.01 0.00 39.73 3.96
3989 4591 9.646522 ATGTTTGGGCAGATAGTATATTTTCTT 57.353 29.630 0.00 0.00 0.00 2.52
3990 4592 9.474313 TGTTTGGGCAGATAGTATATTTTCTTT 57.526 29.630 0.00 0.00 0.00 2.52
4033 4635 8.980481 ACTCAAACAAAGGAAGATTCTTTCTA 57.020 30.769 7.66 0.00 32.72 2.10
4044 4646 8.918116 AGGAAGATTCTTTCTATTTATTTGCCC 58.082 33.333 5.35 0.00 33.05 5.36
4046 4648 8.608185 AAGATTCTTTCTATTTATTTGCCCCA 57.392 30.769 0.00 0.00 33.05 4.96
4047 4649 8.608185 AGATTCTTTCTATTTATTTGCCCCAA 57.392 30.769 0.00 0.00 30.96 4.12
4054 4660 6.019748 TCTATTTATTTGCCCCAAGTTCCAA 58.980 36.000 0.00 0.00 0.00 3.53
4055 4661 5.777526 ATTTATTTGCCCCAAGTTCCAAT 57.222 34.783 0.00 0.00 0.00 3.16
4088 4694 8.738645 ATCAAATGAAAGAATAGGGACACTAC 57.261 34.615 0.00 0.00 33.70 2.73
4093 4699 5.929992 TGAAAGAATAGGGACACTACGTTTG 59.070 40.000 0.00 0.00 33.70 2.93
4095 4701 5.479124 AGAATAGGGACACTACGTTTGTT 57.521 39.130 0.00 0.00 33.70 2.83
4183 4791 5.409826 AGACAGCGTTTCTATTTTCCTTCTG 59.590 40.000 0.00 0.00 0.00 3.02
4194 4802 3.884037 TTTCCTTCTGCTTTTCCCTCT 57.116 42.857 0.00 0.00 0.00 3.69
4234 4871 1.656263 GCATCCATCATTGTGCGCG 60.656 57.895 0.00 0.00 0.00 6.86
4235 4872 2.016171 CATCCATCATTGTGCGCGA 58.984 52.632 12.10 0.00 0.00 5.87
4236 4873 0.589708 CATCCATCATTGTGCGCGAT 59.410 50.000 12.10 0.00 0.00 4.58
4237 4874 1.002142 CATCCATCATTGTGCGCGATT 60.002 47.619 12.10 0.00 0.00 3.34
4283 4927 3.407967 TGGGATCCCAGGGAACGC 61.408 66.667 30.62 22.42 41.89 4.84
4284 4928 4.547367 GGGATCCCAGGGAACGCG 62.547 72.222 26.95 3.53 34.34 6.01
4381 5025 2.668212 TTCTTCCCAAGCCGTGCG 60.668 61.111 0.00 0.00 0.00 5.34
4424 5068 4.321452 CGATCGATCGGGAGGGTTTAATTA 60.321 45.833 34.54 0.00 45.93 1.40
4426 5070 3.064931 CGATCGGGAGGGTTTAATTAGC 58.935 50.000 7.38 0.00 0.00 3.09
4440 5084 1.736249 ATTAGCGCGCGTACGTTGTC 61.736 55.000 32.35 11.90 42.83 3.18
4441 5085 3.591996 TAGCGCGCGTACGTTGTCA 62.592 57.895 32.35 3.06 42.83 3.58
4452 5096 3.985279 CGTACGTTGTCAAGAGGATTGAA 59.015 43.478 7.22 0.00 0.00 2.69
4504 5148 1.075050 TCCGATAGATAGCCCGGTCTT 59.925 52.381 0.00 0.00 42.34 3.01
4520 5164 0.956633 TCTTCAAGCAAGCAAGCAGG 59.043 50.000 3.19 0.00 36.85 4.85
4642 5292 1.823041 GAAGATGCCTCTGCCTGCC 60.823 63.158 0.00 0.00 36.33 4.85
4750 5415 3.002102 CAGCTTTTTGTTGCAGTGGTTT 58.998 40.909 0.00 0.00 0.00 3.27
5082 5747 1.025113 TCTCTGTCTACGTGCCCTCG 61.025 60.000 0.00 0.00 0.00 4.63
5097 5762 0.036388 CCTCGCCTTCACTAGCCAAA 60.036 55.000 0.00 0.00 0.00 3.28
5110 5775 6.919721 TCACTAGCCAAATTAATTGACCAAC 58.080 36.000 0.39 0.00 41.85 3.77
5131 5796 9.756571 ACCAACCACTAATTAATTGTACCATTA 57.243 29.630 11.05 0.00 0.00 1.90
5136 5801 7.227910 CCACTAATTAATTGTACCATTACCGCT 59.772 37.037 11.05 0.00 0.00 5.52
5149 5814 9.228636 GTACCATTACCGCTTACATTTTAATTG 57.771 33.333 0.00 0.00 0.00 2.32
5152 5817 9.180678 CCATTACCGCTTACATTTTAATTGATC 57.819 33.333 0.00 0.00 0.00 2.92
5158 5823 8.826710 CCGCTTACATTTTAATTGATCTCTACA 58.173 33.333 0.00 0.00 0.00 2.74
5159 5824 9.638300 CGCTTACATTTTAATTGATCTCTACAC 57.362 33.333 0.00 0.00 0.00 2.90
5163 5828 7.989826 ACATTTTAATTGATCTCTACACCTGC 58.010 34.615 0.00 0.00 0.00 4.85
5164 5829 7.831193 ACATTTTAATTGATCTCTACACCTGCT 59.169 33.333 0.00 0.00 0.00 4.24
5165 5830 7.615582 TTTTAATTGATCTCTACACCTGCTG 57.384 36.000 0.00 0.00 0.00 4.41
5166 5831 4.833478 AATTGATCTCTACACCTGCTGT 57.167 40.909 0.00 0.00 36.82 4.40
5167 5832 4.833478 ATTGATCTCTACACCTGCTGTT 57.167 40.909 0.00 0.00 33.91 3.16
5169 5834 4.623932 TGATCTCTACACCTGCTGTTTT 57.376 40.909 0.00 0.00 33.91 2.43
5173 5838 5.284861 TCTCTACACCTGCTGTTTTTACA 57.715 39.130 0.00 0.00 33.91 2.41
5177 5857 5.883673 TCTACACCTGCTGTTTTTACACTTT 59.116 36.000 0.00 0.00 33.91 2.66
5265 5947 4.536687 GCCGCGCGGGAGAATTTG 62.537 66.667 45.81 20.95 38.47 2.32
5377 6062 6.659668 TGGTCAGTATGTGGATCTACTATAGC 59.340 42.308 10.82 4.36 37.40 2.97
5653 6349 2.071778 AGGTTGCCACTGTTTGTCAT 57.928 45.000 0.00 0.00 0.00 3.06
5661 6364 4.202000 TGCCACTGTTTGTCATAGTGTTTG 60.202 41.667 0.00 0.00 40.04 2.93
5814 6522 1.898863 ACATAGCCCCCTTCTCATGT 58.101 50.000 0.00 0.00 0.00 3.21
5815 6523 3.060479 ACATAGCCCCCTTCTCATGTA 57.940 47.619 0.00 0.00 0.00 2.29
5830 6538 2.986479 TCATGTATAGCAATGTAGCGCG 59.014 45.455 0.00 0.00 40.15 6.86
5905 6613 3.270877 GTTGGGCGTGAGATAGTTCATT 58.729 45.455 0.00 0.00 0.00 2.57
5925 6633 1.002868 AGGTGGTCATGCTGCTCAC 60.003 57.895 0.00 2.14 0.00 3.51
5932 6640 3.417224 ATGCTGCTCACGCACACG 61.417 61.111 0.00 0.00 42.25 4.49
5989 6697 4.021894 ACTGTTGAGTCGCTCTAGAACAAT 60.022 41.667 8.07 0.00 32.07 2.71
6051 6759 9.292195 TCGTCCTAATATATGTTCACATACTCA 57.708 33.333 1.66 0.00 41.15 3.41
6146 6854 0.037326 GTGAAGGGTGATGCGTGAGA 60.037 55.000 0.00 0.00 0.00 3.27
6178 6886 6.151480 GGCATTTCCATGAAATTTGGTCAAAT 59.849 34.615 0.00 3.34 39.82 2.32
6242 6954 5.473039 GCTTGATTTCCTGTTGCAATAAGT 58.527 37.500 0.59 0.00 0.00 2.24
6250 6962 0.451783 GTTGCAATAAGTCGCCCCAG 59.548 55.000 0.59 0.00 0.00 4.45
6261 6973 1.406898 GTCGCCCCAGGTTACTACTAC 59.593 57.143 0.00 0.00 0.00 2.73
6265 6977 2.694109 GCCCCAGGTTACTACTACTCAG 59.306 54.545 0.00 0.00 0.00 3.35
6421 7133 5.473504 ACTTAAGGTTGCCACTATTTGTCAG 59.526 40.000 7.53 0.00 0.00 3.51
6530 8043 6.093219 GGATGAATGCATGCCTACACTATAAG 59.907 42.308 16.68 0.00 36.92 1.73
6531 8044 6.173427 TGAATGCATGCCTACACTATAAGA 57.827 37.500 16.68 0.00 0.00 2.10
6534 8047 4.380531 TGCATGCCTACACTATAAGAAGC 58.619 43.478 16.68 0.00 0.00 3.86
6537 8050 2.052157 GCCTACACTATAAGAAGCGCG 58.948 52.381 0.00 0.00 0.00 6.86
6567 8080 2.879756 GCAAGTAAGGGCATCTCCAACA 60.880 50.000 0.00 0.00 36.21 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 122 1.689273 AGAGTCCACGGAGGCATAATC 59.311 52.381 0.00 0.00 37.29 1.75
126 131 3.434739 GGTAAGATCCTAGAGTCCACGGA 60.435 52.174 0.00 0.00 0.00 4.69
181 186 9.334947 AGGTATATGATCTCACTTTCAATGTTG 57.665 33.333 0.00 0.00 0.00 3.33
205 254 8.228464 GTGAAAAAGTAGAGACGGAAAATAAGG 58.772 37.037 0.00 0.00 0.00 2.69
206 255 8.989980 AGTGAAAAAGTAGAGACGGAAAATAAG 58.010 33.333 0.00 0.00 0.00 1.73
207 256 8.770828 CAGTGAAAAAGTAGAGACGGAAAATAA 58.229 33.333 0.00 0.00 0.00 1.40
226 275 5.473504 GGTTCAAAGGAATAGAGCAGTGAAA 59.526 40.000 0.00 0.00 35.05 2.69
228 277 4.041567 TGGTTCAAAGGAATAGAGCAGTGA 59.958 41.667 0.00 0.00 35.05 3.41
229 278 4.326826 TGGTTCAAAGGAATAGAGCAGTG 58.673 43.478 0.00 0.00 35.05 3.66
230 279 4.640771 TGGTTCAAAGGAATAGAGCAGT 57.359 40.909 0.00 0.00 35.05 4.40
231 280 5.617751 CGTTTGGTTCAAAGGAATAGAGCAG 60.618 44.000 7.13 0.00 40.31 4.24
232 281 4.215399 CGTTTGGTTCAAAGGAATAGAGCA 59.785 41.667 7.13 0.00 40.31 4.26
233 282 4.454504 TCGTTTGGTTCAAAGGAATAGAGC 59.545 41.667 11.68 0.00 42.53 4.09
254 303 8.934973 AAATTTTCTCTAACGAGATTTGTTCG 57.065 30.769 0.00 0.00 45.27 3.95
258 307 8.296713 TGGGAAAATTTTCTCTAACGAGATTTG 58.703 33.333 26.87 0.00 45.27 2.32
259 308 8.404107 TGGGAAAATTTTCTCTAACGAGATTT 57.596 30.769 26.87 0.00 45.27 2.17
263 312 6.803154 ACTGGGAAAATTTTCTCTAACGAG 57.197 37.500 26.87 18.88 38.49 4.18
272 324 9.856488 GAAAGGTATAGAACTGGGAAAATTTTC 57.144 33.333 20.51 20.51 36.46 2.29
277 329 6.713731 AGGAAAGGTATAGAACTGGGAAAA 57.286 37.500 0.00 0.00 0.00 2.29
278 330 7.626084 TCATAGGAAAGGTATAGAACTGGGAAA 59.374 37.037 0.00 0.00 0.00 3.13
285 337 8.890718 GTTTGGTTCATAGGAAAGGTATAGAAC 58.109 37.037 0.00 0.00 34.13 3.01
292 344 4.280929 GCTTGTTTGGTTCATAGGAAAGGT 59.719 41.667 0.00 0.00 34.13 3.50
294 346 4.321974 GGGCTTGTTTGGTTCATAGGAAAG 60.322 45.833 0.00 0.00 34.13 2.62
312 364 6.127101 GGTCAAACCATATAAGTTAGGGCTT 58.873 40.000 0.00 0.00 38.42 4.35
347 399 8.531982 GGGCATACTGATTAGTAGTGATGATAA 58.468 37.037 3.54 0.00 42.36 1.75
348 400 7.673926 TGGGCATACTGATTAGTAGTGATGATA 59.326 37.037 3.54 0.00 42.36 2.15
354 406 5.276461 TGTGGGCATACTGATTAGTAGTG 57.724 43.478 3.54 3.83 42.36 2.74
356 408 6.101650 TGATGTGGGCATACTGATTAGTAG 57.898 41.667 3.54 0.00 42.36 2.57
382 681 2.457366 AGTACTTTTGCACCGGAGAG 57.543 50.000 9.46 0.00 0.00 3.20
480 782 5.708697 TGCACTCACTGATGATTTGATTCTT 59.291 36.000 0.00 0.00 33.22 2.52
493 795 1.618837 GGTAGAAGGTGCACTCACTGA 59.381 52.381 17.98 0.00 42.72 3.41
494 796 1.344438 TGGTAGAAGGTGCACTCACTG 59.656 52.381 17.98 0.00 42.72 3.66
511 813 5.241506 CACACTGTTGAGGTATTGAAATGGT 59.758 40.000 0.00 0.00 0.00 3.55
521 823 2.129620 ACCGCACACTGTTGAGGTA 58.870 52.632 13.48 0.00 46.71 3.08
537 839 3.572584 CTTTGCTTGCTTGAGATTGACC 58.427 45.455 0.00 0.00 0.00 4.02
579 886 6.326323 GGAGGTAGTACTAGTAGTCCTACTGT 59.674 46.154 24.26 15.92 45.25 3.55
605 915 3.311596 GCAAATGACTTATACACCGGGAC 59.688 47.826 6.32 0.00 0.00 4.46
606 916 3.537580 GCAAATGACTTATACACCGGGA 58.462 45.455 6.32 0.00 0.00 5.14
607 917 2.286833 CGCAAATGACTTATACACCGGG 59.713 50.000 6.32 0.00 0.00 5.73
608 918 2.933906 ACGCAAATGACTTATACACCGG 59.066 45.455 0.00 0.00 0.00 5.28
609 919 4.802039 ACTACGCAAATGACTTATACACCG 59.198 41.667 0.00 0.00 0.00 4.94
610 920 6.657836 AACTACGCAAATGACTTATACACC 57.342 37.500 0.00 0.00 0.00 4.16
611 921 9.685005 CTAAAACTACGCAAATGACTTATACAC 57.315 33.333 0.00 0.00 0.00 2.90
612 922 9.642327 TCTAAAACTACGCAAATGACTTATACA 57.358 29.630 0.00 0.00 0.00 2.29
615 925 8.540492 CGATCTAAAACTACGCAAATGACTTAT 58.460 33.333 0.00 0.00 0.00 1.73
616 926 7.756272 TCGATCTAAAACTACGCAAATGACTTA 59.244 33.333 0.00 0.00 0.00 2.24
617 927 6.588756 TCGATCTAAAACTACGCAAATGACTT 59.411 34.615 0.00 0.00 0.00 3.01
618 928 6.034683 GTCGATCTAAAACTACGCAAATGACT 59.965 38.462 0.00 0.00 0.00 3.41
619 929 6.176453 GTCGATCTAAAACTACGCAAATGAC 58.824 40.000 0.00 0.00 0.00 3.06
620 930 5.865013 TGTCGATCTAAAACTACGCAAATGA 59.135 36.000 0.00 0.00 0.00 2.57
621 931 6.089920 TGTCGATCTAAAACTACGCAAATG 57.910 37.500 0.00 0.00 0.00 2.32
622 932 6.715344 TTGTCGATCTAAAACTACGCAAAT 57.285 33.333 0.00 0.00 0.00 2.32
623 933 6.715344 ATTGTCGATCTAAAACTACGCAAA 57.285 33.333 0.00 0.00 0.00 3.68
624 934 6.715344 AATTGTCGATCTAAAACTACGCAA 57.285 33.333 0.00 0.00 0.00 4.85
625 935 6.715344 AAATTGTCGATCTAAAACTACGCA 57.285 33.333 0.00 0.00 0.00 5.24
626 936 8.378421 AGTTAAATTGTCGATCTAAAACTACGC 58.622 33.333 0.00 0.00 0.00 4.42
744 1054 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
745 1055 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
747 1057 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
748 1058 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
749 1059 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
750 1060 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
751 1061 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
752 1062 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
753 1063 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
754 1064 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
755 1065 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
756 1066 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
757 1067 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
758 1068 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
759 1069 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
760 1070 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
761 1071 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
762 1072 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
763 1073 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
764 1074 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
765 1075 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
766 1076 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
767 1077 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
768 1078 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
769 1079 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
770 1080 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
771 1081 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
772 1082 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
773 1083 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
774 1084 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
775 1085 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
776 1086 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
777 1087 3.312146 TCGGTGTATAAGTCATTCGCGTA 59.688 43.478 5.77 0.00 0.00 4.42
778 1088 2.097954 TCGGTGTATAAGTCATTCGCGT 59.902 45.455 5.77 0.00 0.00 6.01
779 1089 2.719556 CTCGGTGTATAAGTCATTCGCG 59.280 50.000 0.00 0.00 0.00 5.87
780 1090 3.729716 GTCTCGGTGTATAAGTCATTCGC 59.270 47.826 0.00 0.00 0.00 4.70
781 1091 3.966844 CGTCTCGGTGTATAAGTCATTCG 59.033 47.826 0.00 0.00 0.00 3.34
782 1092 4.288531 CCGTCTCGGTGTATAAGTCATTC 58.711 47.826 0.00 0.00 42.73 2.67
783 1093 4.303086 CCGTCTCGGTGTATAAGTCATT 57.697 45.455 0.00 0.00 42.73 2.57
784 1094 3.984508 CCGTCTCGGTGTATAAGTCAT 57.015 47.619 0.00 0.00 42.73 3.06
794 1104 4.891098 TGGTACTACCTCCGTCTCGGTG 62.891 59.091 6.79 5.75 41.38 4.94
795 1105 2.792952 TGGTACTACCTCCGTCTCGGT 61.793 57.143 6.79 0.00 41.38 4.69
796 1106 0.107508 TGGTACTACCTCCGTCTCGG 60.108 60.000 6.79 1.45 41.75 4.63
797 1107 1.297664 CTGGTACTACCTCCGTCTCG 58.702 60.000 6.79 0.00 39.58 4.04
798 1108 2.093021 AGACTGGTACTACCTCCGTCTC 60.093 54.545 14.52 0.84 36.79 3.36
799 1109 1.914798 AGACTGGTACTACCTCCGTCT 59.085 52.381 14.52 14.52 39.58 4.18
800 1110 2.416680 AGACTGGTACTACCTCCGTC 57.583 55.000 6.79 9.81 39.58 4.79
801 1111 3.274095 GTAGACTGGTACTACCTCCGT 57.726 52.381 6.79 1.68 39.58 4.69
807 1117 3.378861 AGGGTGGTAGACTGGTACTAC 57.621 52.381 0.00 0.00 39.32 2.73
808 1118 4.408904 AAAGGGTGGTAGACTGGTACTA 57.591 45.455 0.00 0.00 0.00 1.82
809 1119 3.271153 AAAGGGTGGTAGACTGGTACT 57.729 47.619 0.00 0.00 0.00 2.73
810 1120 5.688814 ATTAAAGGGTGGTAGACTGGTAC 57.311 43.478 0.00 0.00 0.00 3.34
811 1121 7.071572 GGAATATTAAAGGGTGGTAGACTGGTA 59.928 40.741 0.00 0.00 0.00 3.25
812 1122 6.126565 GGAATATTAAAGGGTGGTAGACTGGT 60.127 42.308 0.00 0.00 0.00 4.00
1037 1351 2.123077 CCCTCCTCATCCTCGGCT 60.123 66.667 0.00 0.00 0.00 5.52
1040 1354 0.539438 CTCTCCCCTCCTCATCCTCG 60.539 65.000 0.00 0.00 0.00 4.63
1045 1359 0.870313 TATGGCTCTCCCCTCCTCAT 59.130 55.000 0.00 0.00 0.00 2.90
1100 1414 1.409427 GATCTGTAGAGGAACGGTGGG 59.591 57.143 0.00 0.00 0.00 4.61
1102 1416 2.014857 TCGATCTGTAGAGGAACGGTG 58.985 52.381 0.00 0.00 31.58 4.94
1105 1419 4.024725 CCTACTTCGATCTGTAGAGGAACG 60.025 50.000 17.00 0.00 38.62 3.95
1107 1421 5.113446 ACCTACTTCGATCTGTAGAGGAA 57.887 43.478 17.00 0.00 38.62 3.36
1127 1441 1.008309 GATCGAGGTAGCTGCGACC 60.008 63.158 22.37 22.37 36.83 4.79
1128 1442 0.382515 AAGATCGAGGTAGCTGCGAC 59.617 55.000 15.31 4.17 36.83 5.19
1138 1483 1.069823 CCATGGGTGAGAAGATCGAGG 59.930 57.143 2.85 0.00 0.00 4.63
1147 1492 2.284625 AGGACGCCATGGGTGAGA 60.285 61.111 15.13 0.00 36.58 3.27
1253 1598 2.038659 CCTGAGGAGATCAAGGAGGAC 58.961 57.143 0.00 0.00 37.52 3.85
1254 1599 1.648568 ACCTGAGGAGATCAAGGAGGA 59.351 52.381 4.99 0.00 37.52 3.71
1379 1726 0.404040 CCCCAACAAACCCTAGCTCA 59.596 55.000 0.00 0.00 0.00 4.26
1380 1727 0.696501 TCCCCAACAAACCCTAGCTC 59.303 55.000 0.00 0.00 0.00 4.09
1409 1756 4.737054 CCATTTAGCATCCACAAACTGAC 58.263 43.478 0.00 0.00 0.00 3.51
1412 1759 3.164268 TGCCATTTAGCATCCACAAACT 58.836 40.909 0.00 0.00 38.00 2.66
1451 1798 2.610859 TCCCCTGGGCTCCTTGTC 60.611 66.667 7.39 0.00 34.68 3.18
1463 1810 4.065281 CGCGGTTTCGTCTCCCCT 62.065 66.667 0.00 0.00 38.89 4.79
1580 1927 3.390521 TGGCCGTACTCCTGCAGG 61.391 66.667 27.87 27.87 0.00 4.85
1820 2167 0.748729 AGGAGGACGATGACGAGGAC 60.749 60.000 0.00 0.00 42.66 3.85
1829 2176 2.516460 CGGTCGGAGGAGGACGAT 60.516 66.667 0.00 0.00 41.53 3.73
1832 2179 3.519930 GAGCGGTCGGAGGAGGAC 61.520 72.222 0.00 0.00 0.00 3.85
1970 2320 2.852180 CGACGGTGTCAGTGGTGGA 61.852 63.158 0.00 0.00 32.09 4.02
2031 2384 0.532862 GGCATCGACGACATGGGATT 60.533 55.000 0.00 0.00 0.00 3.01
2284 2637 2.581354 CGAGACCCAGCTTGGAGG 59.419 66.667 11.55 0.00 40.96 4.30
2317 2670 2.539338 GCCGCCACGTTGAAGTTGA 61.539 57.895 0.00 0.00 0.00 3.18
2319 2672 3.645975 CGCCGCCACGTTGAAGTT 61.646 61.111 0.00 0.00 0.00 2.66
2387 2740 1.531602 GTGCAGAAACCCCAGCCTT 60.532 57.895 0.00 0.00 0.00 4.35
2452 2805 3.785859 GCGGAGTGCATGGGAGGA 61.786 66.667 0.00 0.00 45.45 3.71
2539 2892 6.116126 AGGAGTACATTCAAATTACTGGCTC 58.884 40.000 0.00 0.00 0.00 4.70
2598 2955 2.496942 GCAGGTAGCAATGCATGGT 58.503 52.632 8.35 2.92 44.79 3.55
2622 2979 2.572191 ATCATGGTGTACCGTACGTG 57.428 50.000 15.21 8.32 39.43 4.49
2643 3005 3.128242 GCACATGCTAAGCTCTGACAAAT 59.872 43.478 0.00 0.00 38.21 2.32
2648 3010 2.285977 CATGCACATGCTAAGCTCTGA 58.714 47.619 5.31 0.00 42.66 3.27
2736 3099 1.003580 TCTCCATTGGTGTCAAGCTCC 59.996 52.381 1.86 0.00 36.19 4.70
2761 3124 2.637382 TGATGGAAGTGGCAAGTACTCA 59.363 45.455 0.00 0.00 0.00 3.41
2783 3146 0.596600 ACGTGCCGTGTTGTACTCTG 60.597 55.000 0.00 0.00 39.18 3.35
2801 3164 5.561993 GTCCGTGCTAATCTATCGATCTAC 58.438 45.833 0.00 0.00 0.00 2.59
2827 3190 0.955428 GCAGCGGGAAAGACATGTCA 60.955 55.000 27.02 0.00 0.00 3.58
2849 3212 3.902881 AATGCAAGCTACTCTAGTGCT 57.097 42.857 5.93 0.00 35.18 4.40
2850 3213 3.935203 TGAAATGCAAGCTACTCTAGTGC 59.065 43.478 0.00 0.00 0.00 4.40
2851 3214 6.484540 CAATGAAATGCAAGCTACTCTAGTG 58.515 40.000 0.00 0.00 0.00 2.74
2853 3216 5.508872 GCAATGAAATGCAAGCTACTCTAG 58.491 41.667 0.00 0.00 45.70 2.43
2854 3217 5.490139 GCAATGAAATGCAAGCTACTCTA 57.510 39.130 0.00 0.00 45.70 2.43
2891 3254 0.365523 GTACTGCGTATGTGTGTGCG 59.634 55.000 0.00 0.00 0.00 5.34
2892 3255 1.424403 TGTACTGCGTATGTGTGTGC 58.576 50.000 0.00 0.00 0.00 4.57
2893 3256 3.242944 GCTATGTACTGCGTATGTGTGTG 59.757 47.826 0.00 0.00 0.00 3.82
2894 3257 3.130516 AGCTATGTACTGCGTATGTGTGT 59.869 43.478 0.00 0.00 0.00 3.72
2905 3268 4.083271 TCGATCGATTGGAGCTATGTACTG 60.083 45.833 15.15 0.00 0.00 2.74
3380 3777 8.133754 TCTTTTTCTTCTTTTGCATGAACATG 57.866 30.769 10.04 10.04 41.60 3.21
3415 3817 7.255242 GCAAGGCAGAGCTTAATTTGTCATATA 60.255 37.037 0.00 0.00 0.00 0.86
3442 3844 4.838904 AGGCCTACGTTTTTAGAATCCT 57.161 40.909 1.29 0.00 0.00 3.24
3466 3868 3.610040 TCATGTTCTTGTGCTATCCGT 57.390 42.857 0.00 0.00 0.00 4.69
3467 3869 4.687948 CCTATCATGTTCTTGTGCTATCCG 59.312 45.833 0.00 0.00 0.00 4.18
3473 3877 7.380602 GCATTAATTCCTATCATGTTCTTGTGC 59.619 37.037 0.00 0.00 0.00 4.57
3478 3882 5.106948 CGCGCATTAATTCCTATCATGTTCT 60.107 40.000 8.75 0.00 0.00 3.01
3497 3902 2.147436 TCATATATTGTGCTCGCGCA 57.853 45.000 8.75 0.00 45.60 6.09
3534 3942 7.513371 ACCAATGTTAGTTCCGTGAAATTTA 57.487 32.000 0.00 0.00 0.00 1.40
3561 3969 8.076178 GGATTCATGTGTTTTTCCTATTATCGG 58.924 37.037 0.00 0.00 0.00 4.18
3609 4017 9.988350 AATCTTACTTTTGCATATGTTCTTACG 57.012 29.630 4.29 0.00 0.00 3.18
3646 4054 5.488262 AACAAAGCAAAGGCCATAGATTT 57.512 34.783 5.01 1.66 42.56 2.17
3786 4194 3.044235 TGGTATTGGCGATGCTCATAG 57.956 47.619 2.72 0.00 0.00 2.23
3791 4199 2.653726 TGATTTGGTATTGGCGATGCT 58.346 42.857 2.72 0.00 0.00 3.79
3792 4200 3.435105 TTGATTTGGTATTGGCGATGC 57.565 42.857 0.00 0.00 0.00 3.91
3797 4205 4.911514 ACGGTATTGATTTGGTATTGGC 57.088 40.909 0.00 0.00 0.00 4.52
3798 4206 7.795482 TCTAACGGTATTGATTTGGTATTGG 57.205 36.000 0.00 0.00 0.00 3.16
3799 4207 9.878599 GATTCTAACGGTATTGATTTGGTATTG 57.121 33.333 0.00 0.00 0.00 1.90
3865 4273 7.534085 TCGCGAAAACAATCTATACTTTCAT 57.466 32.000 6.20 0.00 0.00 2.57
3887 4295 7.360361 ACTTTATAAAGCTTGACCAAGTTTCG 58.640 34.615 22.45 0.00 40.24 3.46
3888 4296 9.529325 AAACTTTATAAAGCTTGACCAAGTTTC 57.471 29.630 22.45 0.00 40.24 2.78
3901 4309 7.153217 TGGCCTAAGTCAAACTTTATAAAGC 57.847 36.000 22.45 8.12 39.51 3.51
3939 4347 3.447950 ACTCCCCCGTTTTATGTACTCT 58.552 45.455 0.00 0.00 0.00 3.24
3994 4596 8.773645 CCTTTGTTTGAGTTTTGAAAGAAAAGT 58.226 29.630 0.00 0.00 0.00 2.66
3995 4597 8.987890 TCCTTTGTTTGAGTTTTGAAAGAAAAG 58.012 29.630 0.00 0.00 0.00 2.27
3996 4598 8.894768 TCCTTTGTTTGAGTTTTGAAAGAAAA 57.105 26.923 0.00 0.00 0.00 2.29
3997 4599 8.894768 TTCCTTTGTTTGAGTTTTGAAAGAAA 57.105 26.923 0.00 0.00 0.00 2.52
3998 4600 8.364142 TCTTCCTTTGTTTGAGTTTTGAAAGAA 58.636 29.630 0.00 0.00 0.00 2.52
3999 4601 7.891561 TCTTCCTTTGTTTGAGTTTTGAAAGA 58.108 30.769 0.00 0.00 0.00 2.52
4000 4602 8.707938 ATCTTCCTTTGTTTGAGTTTTGAAAG 57.292 30.769 0.00 0.00 0.00 2.62
4001 4603 9.150348 GAATCTTCCTTTGTTTGAGTTTTGAAA 57.850 29.630 0.00 0.00 0.00 2.69
4002 4604 8.531146 AGAATCTTCCTTTGTTTGAGTTTTGAA 58.469 29.630 0.00 0.00 0.00 2.69
4003 4605 8.066612 AGAATCTTCCTTTGTTTGAGTTTTGA 57.933 30.769 0.00 0.00 0.00 2.69
4004 4606 8.707938 AAGAATCTTCCTTTGTTTGAGTTTTG 57.292 30.769 0.00 0.00 0.00 2.44
4005 4607 9.371136 GAAAGAATCTTCCTTTGTTTGAGTTTT 57.629 29.630 0.00 0.00 34.33 2.43
4033 4635 5.777526 ATTGGAACTTGGGGCAAATAAAT 57.222 34.783 0.00 0.00 0.00 1.40
4041 4643 4.817318 TCAAATAATTGGAACTTGGGGC 57.183 40.909 0.00 0.00 37.15 5.80
4042 4644 6.945218 TGATTCAAATAATTGGAACTTGGGG 58.055 36.000 0.00 0.00 37.15 4.96
4043 4645 8.845413 TTTGATTCAAATAATTGGAACTTGGG 57.155 30.769 7.74 0.00 37.15 4.12
4080 4686 2.798847 GTGGAGAACAAACGTAGTGTCC 59.201 50.000 5.36 9.55 45.00 4.02
4088 4694 3.113260 AGGAGAAGTGGAGAACAAACG 57.887 47.619 0.00 0.00 0.00 3.60
4093 4699 6.644347 TCAATTCATAGGAGAAGTGGAGAAC 58.356 40.000 4.61 0.00 42.17 3.01
4095 4701 5.365025 CCTCAATTCATAGGAGAAGTGGAGA 59.635 44.000 4.61 0.00 42.17 3.71
4183 4791 4.972751 AGGATCTATGAGAGGGAAAAGC 57.027 45.455 0.00 0.00 0.00 3.51
4194 4802 6.888105 TGCAAACAATGTCTAGGATCTATGA 58.112 36.000 0.00 0.00 0.00 2.15
4381 5025 1.398390 GGTGCATCCATCAGACGTTTC 59.602 52.381 0.00 0.00 35.97 2.78
4424 5068 4.986587 TGACAACGTACGCGCGCT 62.987 61.111 32.58 19.60 42.83 5.92
4426 5070 2.091421 CTTGACAACGTACGCGCG 59.909 61.111 30.96 30.96 42.83 6.86
4440 5084 1.002366 CCGTCGCTTCAATCCTCTTG 58.998 55.000 0.00 0.00 0.00 3.02
4441 5085 0.741221 GCCGTCGCTTCAATCCTCTT 60.741 55.000 0.00 0.00 0.00 2.85
4452 5096 2.589442 TTTTTGACCGCCGTCGCT 60.589 55.556 0.74 0.00 42.37 4.93
4504 5148 2.567497 GCCCTGCTTGCTTGCTTGA 61.567 57.895 3.47 0.00 0.00 3.02
4520 5164 1.457346 ACAGCTAGCATTCAAGTGCC 58.543 50.000 18.83 0.00 46.19 5.01
4915 5580 1.965930 GCCTTCACGTCCATGCACA 60.966 57.895 0.00 0.00 0.00 4.57
4917 5582 2.741985 CGCCTTCACGTCCATGCA 60.742 61.111 0.00 0.00 0.00 3.96
5131 5796 7.865706 AGAGATCAATTAAAATGTAAGCGGT 57.134 32.000 0.00 0.00 0.00 5.68
5139 5804 8.127327 CAGCAGGTGTAGAGATCAATTAAAATG 58.873 37.037 0.00 0.00 0.00 2.32
5149 5814 5.932303 TGTAAAAACAGCAGGTGTAGAGATC 59.068 40.000 5.48 0.00 39.03 2.75
5152 5817 5.057149 AGTGTAAAAACAGCAGGTGTAGAG 58.943 41.667 5.48 0.00 39.03 2.43
5177 5857 3.002246 GTCTCACATCTGCACACGAAAAA 59.998 43.478 0.00 0.00 0.00 1.94
5224 5906 2.404215 CTTGACCCAAGACGTACACAG 58.596 52.381 0.65 0.00 43.42 3.66
5264 5946 3.290948 AACTATAATTCGCCTTGCCCA 57.709 42.857 0.00 0.00 0.00 5.36
5265 5947 5.246307 AGATAACTATAATTCGCCTTGCCC 58.754 41.667 0.00 0.00 0.00 5.36
5377 6062 3.502920 ACACAAGACGCTCGATTAGAAG 58.497 45.455 0.00 0.00 0.00 2.85
5420 6108 7.554118 CCAACACTATTGTCCATGTTAGAAGAT 59.446 37.037 0.00 0.00 33.55 2.40
5537 6227 7.846066 TGCATGTTAGCCAACCTTAAATATTT 58.154 30.769 5.89 5.89 33.41 1.40
5540 6230 6.379703 ACATGCATGTTAGCCAACCTTAAATA 59.620 34.615 26.61 0.00 37.90 1.40
5547 6237 3.631686 TCATACATGCATGTTAGCCAACC 59.368 43.478 35.45 0.00 41.97 3.77
5653 6349 6.164417 TGACTAGCTAAACACCAAACACTA 57.836 37.500 0.00 0.00 0.00 2.74
5757 6465 8.413309 AACAAAGGATATATGCATGCTTACAT 57.587 30.769 20.33 11.76 35.76 2.29
5814 6522 3.565516 CTCTTCGCGCTACATTGCTATA 58.434 45.455 5.56 0.00 0.00 1.31
5815 6523 2.398498 CTCTTCGCGCTACATTGCTAT 58.602 47.619 5.56 0.00 0.00 2.97
5905 6613 1.297689 GAGCAGCATGACCACCTCA 59.702 57.895 0.00 0.00 39.69 3.86
6062 6770 5.983118 CACTCACTTGTACACACATAACAGA 59.017 40.000 0.00 0.00 33.76 3.41
6068 6776 3.494398 GGGTCACTCACTTGTACACACAT 60.494 47.826 0.00 0.00 33.76 3.21
6108 6816 4.314961 TCACTCAACGTCTATGCAACATT 58.685 39.130 0.00 0.00 0.00 2.71
6146 6854 8.741841 CCAAATTTCATGGAAATGCCTAATTTT 58.258 29.630 5.07 0.00 40.77 1.82
6183 6893 6.416631 TCATGTTAGAAGAGATCCTCATGG 57.583 41.667 0.00 0.00 34.54 3.66
6242 6954 1.285962 AGTAGTAGTAACCTGGGGCGA 59.714 52.381 0.00 0.00 0.00 5.54
6250 6962 4.085009 ACCACCACTGAGTAGTAGTAACC 58.915 47.826 0.00 0.00 34.74 2.85
6261 6973 7.552687 TGCTTAAATCTTAATACCACCACTGAG 59.447 37.037 0.00 0.00 0.00 3.35
6265 6977 7.502561 AGGATGCTTAAATCTTAATACCACCAC 59.497 37.037 0.00 0.00 0.00 4.16
6390 7102 2.735134 GTGGCAACCTTAAGTACACGAG 59.265 50.000 0.97 0.00 0.00 4.18
6392 7104 2.762745 AGTGGCAACCTTAAGTACACG 58.237 47.619 0.97 0.00 34.63 4.49
6421 7133 9.331106 GCATTTCTAGCTAAAAACTAAACACTC 57.669 33.333 0.00 0.00 0.00 3.51
6530 8043 1.584308 CTTGCTAGTACTTCGCGCTTC 59.416 52.381 5.56 0.00 0.00 3.86
6531 8044 1.067776 ACTTGCTAGTACTTCGCGCTT 60.068 47.619 5.56 0.00 31.21 4.68
6534 8047 3.106672 CCTTACTTGCTAGTACTTCGCG 58.893 50.000 7.56 0.00 36.61 5.87
6537 8050 4.467198 TGCCCTTACTTGCTAGTACTTC 57.533 45.455 7.56 0.00 36.61 3.01
6567 8080 4.324991 GGCGGTTTGAGGGTCCGT 62.325 66.667 0.00 0.00 45.11 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.