Multiple sequence alignment - TraesCS1B01G426700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G426700 | chr1B | 100.000 | 4574 | 0 | 0 | 1 | 4574 | 652484098 | 652488671 | 0.000000e+00 | 8447.0 |
1 | TraesCS1B01G426700 | chr1B | 85.985 | 1427 | 166 | 15 | 1692 | 3106 | 652463164 | 652464568 | 0.000000e+00 | 1496.0 |
2 | TraesCS1B01G426700 | chr1B | 80.959 | 1355 | 211 | 33 | 1867 | 3198 | 652564680 | 652566010 | 0.000000e+00 | 1029.0 |
3 | TraesCS1B01G426700 | chr1B | 80.596 | 1309 | 204 | 26 | 1862 | 3140 | 652574805 | 652576093 | 0.000000e+00 | 965.0 |
4 | TraesCS1B01G426700 | chr1B | 77.726 | 642 | 100 | 26 | 994 | 1611 | 652459251 | 652459873 | 2.020000e-93 | 353.0 |
5 | TraesCS1B01G426700 | chr1B | 88.750 | 160 | 10 | 5 | 3073 | 3231 | 652464614 | 652464766 | 6.040000e-44 | 189.0 |
6 | TraesCS1B01G426700 | chr1B | 75.962 | 312 | 58 | 11 | 1297 | 1602 | 652485742 | 652486042 | 1.330000e-30 | 145.0 |
7 | TraesCS1B01G426700 | chr1B | 91.176 | 102 | 8 | 1 | 4433 | 4534 | 655133227 | 655133127 | 2.220000e-28 | 137.0 |
8 | TraesCS1B01G426700 | chr1B | 92.308 | 52 | 4 | 0 | 3002 | 3053 | 652577096 | 652577147 | 1.760000e-09 | 75.0 |
9 | TraesCS1B01G426700 | chr1B | 100.000 | 28 | 0 | 0 | 3115 | 3142 | 652464597 | 652464624 | 8.000000e-03 | 52.8 |
10 | TraesCS1B01G426700 | chr1D | 94.024 | 3012 | 114 | 24 | 789 | 3757 | 470123105 | 470126093 | 0.000000e+00 | 4505.0 |
11 | TraesCS1B01G426700 | chr1D | 88.115 | 1565 | 136 | 29 | 1692 | 3236 | 470080934 | 470082468 | 0.000000e+00 | 1814.0 |
12 | TraesCS1B01G426700 | chr1D | 83.488 | 1405 | 182 | 28 | 1853 | 3236 | 470077597 | 470078972 | 0.000000e+00 | 1264.0 |
13 | TraesCS1B01G426700 | chr1D | 80.143 | 1400 | 221 | 38 | 1867 | 3236 | 470184013 | 470185385 | 0.000000e+00 | 992.0 |
14 | TraesCS1B01G426700 | chr1D | 90.835 | 611 | 41 | 5 | 1 | 608 | 470094680 | 470095278 | 0.000000e+00 | 804.0 |
15 | TraesCS1B01G426700 | chr1D | 90.594 | 202 | 15 | 4 | 605 | 803 | 470121637 | 470121837 | 9.760000e-67 | 265.0 |
16 | TraesCS1B01G426700 | chr1D | 84.615 | 221 | 24 | 6 | 3491 | 3707 | 470082628 | 470082842 | 1.290000e-50 | 211.0 |
17 | TraesCS1B01G426700 | chr1D | 81.818 | 110 | 14 | 4 | 4215 | 4322 | 470084032 | 470084137 | 2.270000e-13 | 87.9 |
18 | TraesCS1B01G426700 | chr1A | 92.864 | 3111 | 157 | 32 | 898 | 3987 | 563764520 | 563767586 | 0.000000e+00 | 4455.0 |
19 | TraesCS1B01G426700 | chr1A | 86.906 | 1558 | 159 | 24 | 1692 | 3236 | 563690138 | 563691663 | 0.000000e+00 | 1705.0 |
20 | TraesCS1B01G426700 | chr1A | 86.455 | 694 | 64 | 15 | 227 | 898 | 563763538 | 563764223 | 0.000000e+00 | 734.0 |
21 | TraesCS1B01G426700 | chr1A | 76.097 | 661 | 87 | 44 | 994 | 1611 | 563686218 | 563686850 | 3.480000e-71 | 279.0 |
22 | TraesCS1B01G426700 | chr1A | 79.233 | 313 | 41 | 14 | 1298 | 1602 | 563765270 | 563765566 | 3.610000e-46 | 196.0 |
23 | TraesCS1B01G426700 | chr1A | 90.816 | 98 | 9 | 0 | 4437 | 4534 | 12738318 | 12738221 | 1.030000e-26 | 132.0 |
24 | TraesCS1B01G426700 | chr6B | 95.918 | 98 | 4 | 0 | 4437 | 4534 | 713167153 | 713167250 | 4.740000e-35 | 159.0 |
25 | TraesCS1B01G426700 | chr5B | 93.939 | 99 | 5 | 1 | 4437 | 4534 | 465987494 | 465987592 | 1.030000e-31 | 148.0 |
26 | TraesCS1B01G426700 | chr5B | 90.816 | 98 | 9 | 0 | 4437 | 4534 | 13426133 | 13426036 | 1.030000e-26 | 132.0 |
27 | TraesCS1B01G426700 | chr2D | 92.708 | 96 | 7 | 0 | 4439 | 4534 | 576279096 | 576279001 | 6.170000e-29 | 139.0 |
28 | TraesCS1B01G426700 | chr4A | 90.816 | 98 | 9 | 0 | 4437 | 4534 | 705429675 | 705429578 | 1.030000e-26 | 132.0 |
29 | TraesCS1B01G426700 | chr4A | 100.000 | 33 | 0 | 0 | 1193 | 1225 | 722381029 | 722380997 | 1.370000e-05 | 62.1 |
30 | TraesCS1B01G426700 | chr7D | 90.722 | 97 | 9 | 0 | 4437 | 4533 | 471323317 | 471323221 | 3.710000e-26 | 130.0 |
31 | TraesCS1B01G426700 | chr3B | 89.320 | 103 | 10 | 1 | 4436 | 4538 | 96137016 | 96137117 | 1.340000e-25 | 128.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G426700 | chr1B | 652484098 | 652488671 | 4573 | False | 4296.000 | 8447 | 87.98100 | 1 | 4574 | 2 | chr1B.!!$F3 | 4573 |
1 | TraesCS1B01G426700 | chr1B | 652564680 | 652566010 | 1330 | False | 1029.000 | 1029 | 80.95900 | 1867 | 3198 | 1 | chr1B.!!$F1 | 1331 |
2 | TraesCS1B01G426700 | chr1B | 652459251 | 652464766 | 5515 | False | 522.700 | 1496 | 88.11525 | 994 | 3231 | 4 | chr1B.!!$F2 | 2237 |
3 | TraesCS1B01G426700 | chr1B | 652574805 | 652577147 | 2342 | False | 520.000 | 965 | 86.45200 | 1862 | 3140 | 2 | chr1B.!!$F4 | 1278 |
4 | TraesCS1B01G426700 | chr1D | 470121637 | 470126093 | 4456 | False | 2385.000 | 4505 | 92.30900 | 605 | 3757 | 2 | chr1D.!!$F4 | 3152 |
5 | TraesCS1B01G426700 | chr1D | 470184013 | 470185385 | 1372 | False | 992.000 | 992 | 80.14300 | 1867 | 3236 | 1 | chr1D.!!$F2 | 1369 |
6 | TraesCS1B01G426700 | chr1D | 470077597 | 470084137 | 6540 | False | 844.225 | 1814 | 84.50900 | 1692 | 4322 | 4 | chr1D.!!$F3 | 2630 |
7 | TraesCS1B01G426700 | chr1D | 470094680 | 470095278 | 598 | False | 804.000 | 804 | 90.83500 | 1 | 608 | 1 | chr1D.!!$F1 | 607 |
8 | TraesCS1B01G426700 | chr1A | 563763538 | 563767586 | 4048 | False | 1795.000 | 4455 | 86.18400 | 227 | 3987 | 3 | chr1A.!!$F2 | 3760 |
9 | TraesCS1B01G426700 | chr1A | 563686218 | 563691663 | 5445 | False | 992.000 | 1705 | 81.50150 | 994 | 3236 | 2 | chr1A.!!$F1 | 2242 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
503 | 505 | 0.318441 | CTGGACTGCAAGGTTCTCGA | 59.682 | 55.000 | 0.00 | 0.00 | 39.30 | 4.04 | F |
1288 | 2927 | 0.467804 | CTTCCTCTCTTGCTAGCCCC | 59.532 | 60.000 | 13.29 | 0.00 | 0.00 | 5.80 | F |
1508 | 3183 | 2.288091 | CGGCAGAGGAGATATCACACTG | 60.288 | 54.545 | 15.54 | 15.54 | 0.00 | 3.66 | F |
2761 | 7818 | 1.446907 | AGGCTGACTTTGAGCATTCG | 58.553 | 50.000 | 0.00 | 0.00 | 38.27 | 3.34 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1617 | 3298 | 0.249120 | CCACAGCATTACCTCCACGA | 59.751 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 | R |
2559 | 7607 | 1.216175 | ACCATGGATCACCCTTGATGG | 59.784 | 52.381 | 21.47 | 0.00 | 42.95 | 3.51 | R |
3454 | 9783 | 1.002468 | CACAACAACCACAGCACTAGC | 60.002 | 52.381 | 0.00 | 0.00 | 42.56 | 3.42 | R |
4386 | 11428 | 0.106708 | AGCACTTCCACATCGTGTGT | 59.893 | 50.000 | 14.25 | 4.34 | 46.45 | 3.72 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 1.065126 | GGCATGTTTAGAGGAGCAGGT | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
48 | 49 | 6.127423 | GGAGCAGGTTGATACTTCAAGTACTA | 60.127 | 42.308 | 0.00 | 0.00 | 42.41 | 1.82 |
73 | 74 | 3.964031 | AGAGATTAGGGAAGTTCGAGCAT | 59.036 | 43.478 | 1.01 | 0.00 | 0.00 | 3.79 |
108 | 109 | 3.321968 | GCAGGTCCCTTCAAAGTTGAAAT | 59.678 | 43.478 | 7.80 | 0.00 | 45.61 | 2.17 |
155 | 156 | 1.010793 | TCCCTACCCATGGATGACCTT | 59.989 | 52.381 | 15.22 | 0.00 | 37.04 | 3.50 |
166 | 167 | 1.409427 | GGATGACCTTCTACACCCTCG | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
176 | 177 | 2.037902 | TCTACACCCTCGCAACATTTCA | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
218 | 219 | 1.619827 | TGCAGGCAAAAGATTCTTGGG | 59.380 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
288 | 289 | 3.057946 | GCAAATCAAGACTTGGTGGAGTC | 60.058 | 47.826 | 15.13 | 0.00 | 45.05 | 3.36 |
307 | 308 | 5.869888 | GGAGTCGATGAAACAAACTAGTGAT | 59.130 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
308 | 309 | 6.369065 | GGAGTCGATGAAACAAACTAGTGATT | 59.631 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
355 | 356 | 1.293924 | GATGGATTCTCTGCCACACG | 58.706 | 55.000 | 0.00 | 0.00 | 36.92 | 4.49 |
477 | 479 | 3.011144 | TGTTAGATCATCCAAGCCCCAAA | 59.989 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
480 | 482 | 0.712380 | ATCATCCAAGCCCCAAACCT | 59.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
486 | 488 | 0.967380 | CAAGCCCCAAACCTAGCCTG | 60.967 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
490 | 492 | 1.208165 | CCCCAAACCTAGCCTGGACT | 61.208 | 60.000 | 0.00 | 0.00 | 31.38 | 3.85 |
503 | 505 | 0.318441 | CTGGACTGCAAGGTTCTCGA | 59.682 | 55.000 | 0.00 | 0.00 | 39.30 | 4.04 |
548 | 551 | 6.220881 | AGATTCCTCCTACTCCTGCTATTA | 57.779 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
578 | 581 | 3.818210 | TCGAGTAGATGGAGCAATCTCTC | 59.182 | 47.826 | 0.37 | 6.64 | 37.98 | 3.20 |
679 | 684 | 3.276857 | CAGGAGTTGTTGATCCATCTGG | 58.723 | 50.000 | 0.00 | 0.00 | 38.12 | 3.86 |
746 | 751 | 6.942005 | TGATTTATTGCTATCCCGTCAATGAT | 59.058 | 34.615 | 0.00 | 0.00 | 33.13 | 2.45 |
762 | 770 | 5.300034 | GTCAATGATATCAGGTGGATTGCAA | 59.700 | 40.000 | 11.78 | 0.00 | 37.44 | 4.08 |
775 | 783 | 3.511146 | TGGATTGCAAGGGAACATCTTTC | 59.489 | 43.478 | 4.94 | 0.00 | 0.00 | 2.62 |
778 | 786 | 0.811281 | GCAAGGGAACATCTTTCGGG | 59.189 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
782 | 790 | 3.518992 | AGGGAACATCTTTCGGGAAAA | 57.481 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
783 | 791 | 3.421844 | AGGGAACATCTTTCGGGAAAAG | 58.578 | 45.455 | 0.00 | 0.00 | 44.89 | 2.27 |
954 | 2573 | 1.074566 | CCTTCAACCTCCTCTTGCCTT | 59.925 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
972 | 2591 | 6.721571 | TGCCTTCGTGTTTTATAGAAGAAG | 57.278 | 37.500 | 5.71 | 0.00 | 41.73 | 2.85 |
1042 | 2681 | 4.444838 | CCCACCGCGAATCGACCA | 62.445 | 66.667 | 8.23 | 0.00 | 41.67 | 4.02 |
1078 | 2717 | 4.863925 | GACGGCGCTGCTCTCTCC | 62.864 | 72.222 | 18.15 | 0.00 | 0.00 | 3.71 |
1106 | 2745 | 2.472029 | GAATCCTCCCTTCTCCTGACA | 58.528 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
1151 | 2790 | 2.614969 | AGGGGCATGGAAGCTGGA | 60.615 | 61.111 | 0.00 | 0.00 | 34.17 | 3.86 |
1265 | 2904 | 4.853050 | GCTGCTCTCTGGCGCCAT | 62.853 | 66.667 | 32.87 | 0.00 | 34.52 | 4.40 |
1288 | 2927 | 0.467804 | CTTCCTCTCTTGCTAGCCCC | 59.532 | 60.000 | 13.29 | 0.00 | 0.00 | 5.80 |
1410 | 3067 | 3.543460 | CCGTGTTTCTTCTCGTTGTGTTC | 60.543 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1499 | 3174 | 2.865598 | CGATGGCGGCAGAGGAGAT | 61.866 | 63.158 | 19.29 | 0.00 | 0.00 | 2.75 |
1508 | 3183 | 2.288091 | CGGCAGAGGAGATATCACACTG | 60.288 | 54.545 | 15.54 | 15.54 | 0.00 | 3.66 |
1666 | 3355 | 3.647771 | GGGTTTCTGTCCCGGGCT | 61.648 | 66.667 | 18.49 | 0.00 | 35.27 | 5.19 |
1714 | 3403 | 2.612567 | GGTGTTCGACGCATTGCCA | 61.613 | 57.895 | 2.41 | 0.00 | 0.00 | 4.92 |
1797 | 3486 | 4.847255 | GCAACGTTCACTCATGCC | 57.153 | 55.556 | 0.00 | 0.00 | 0.00 | 4.40 |
2146 | 7194 | 2.430367 | GACGGGTGCTTCCTGGTT | 59.570 | 61.111 | 11.00 | 0.00 | 46.44 | 3.67 |
2500 | 7548 | 3.917072 | AGGCGAGAACCTTCTTGTC | 57.083 | 52.632 | 0.00 | 0.00 | 42.39 | 3.18 |
2559 | 7607 | 3.125316 | CAGGTTTCTCGTATTGGACAAGC | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
2761 | 7818 | 1.446907 | AGGCTGACTTTGAGCATTCG | 58.553 | 50.000 | 0.00 | 0.00 | 38.27 | 3.34 |
2779 | 7836 | 3.138625 | CGGTGGGTCAGTGTGTCT | 58.861 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
2860 | 7917 | 2.366435 | CCGTATGGGGTCCTGGGT | 60.366 | 66.667 | 0.00 | 0.00 | 0.00 | 4.51 |
2861 | 7918 | 2.742116 | CCGTATGGGGTCCTGGGTG | 61.742 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
2862 | 7919 | 2.595655 | GTATGGGGTCCTGGGTGC | 59.404 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
2863 | 7920 | 2.126142 | TATGGGGTCCTGGGTGCA | 59.874 | 61.111 | 0.00 | 0.00 | 0.00 | 4.57 |
2903 | 7960 | 7.415989 | CGTTCTTGGATGATGATGAGGAAAATT | 60.416 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2911 | 7968 | 7.812690 | TGATGATGAGGAAAATTGTATGGAG | 57.187 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2912 | 7969 | 7.348815 | TGATGATGAGGAAAATTGTATGGAGT | 58.651 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
2913 | 7970 | 8.493607 | TGATGATGAGGAAAATTGTATGGAGTA | 58.506 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2914 | 7971 | 9.512588 | GATGATGAGGAAAATTGTATGGAGTAT | 57.487 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2915 | 7972 | 8.681486 | TGATGAGGAAAATTGTATGGAGTATG | 57.319 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
2916 | 7973 | 7.720957 | TGATGAGGAAAATTGTATGGAGTATGG | 59.279 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3057 | 9274 | 2.626840 | GCTCTTCCCTCATGACTGAAC | 58.373 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3058 | 9275 | 2.235898 | GCTCTTCCCTCATGACTGAACT | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3252 | 9554 | 4.058817 | GCAGTACTGGTATGGTTATCAGC | 58.941 | 47.826 | 23.95 | 0.65 | 39.76 | 4.26 |
3286 | 9613 | 7.993183 | CCTGAACTCATTATGGTGGTTACTATT | 59.007 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
3290 | 9617 | 8.732746 | ACTCATTATGGTGGTTACTATTCAAC | 57.267 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3342 | 9670 | 2.294074 | GTGGTTGTTTCTGTGCCTACA | 58.706 | 47.619 | 0.00 | 0.00 | 35.08 | 2.74 |
3345 | 9673 | 3.957497 | TGGTTGTTTCTGTGCCTACAAAT | 59.043 | 39.130 | 0.00 | 0.00 | 36.14 | 2.32 |
3359 | 9687 | 7.094549 | TGTGCCTACAAATATGGTCTGTTTTAC | 60.095 | 37.037 | 0.00 | 0.00 | 32.88 | 2.01 |
3454 | 9783 | 7.481275 | AAGTTGTTATTGCATTGGTTTTCAG | 57.519 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3586 | 9916 | 2.188829 | GCCTTGTGCAGCTGTGTGA | 61.189 | 57.895 | 16.64 | 0.00 | 40.77 | 3.58 |
3650 | 9981 | 5.351233 | TTTTTGCTGTCTACACGGTTATG | 57.649 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
3672 | 10003 | 9.733556 | TTATGTATTAGACAGTGGAACATGTTT | 57.266 | 29.630 | 13.36 | 0.00 | 42.79 | 2.83 |
3747 | 10578 | 6.175471 | ACAATACTGAGTCATTTGCATGAGA | 58.825 | 36.000 | 0.00 | 0.00 | 40.28 | 3.27 |
3806 | 10637 | 5.892348 | TCTAAAAAGAAAATCCTCTGCCCT | 58.108 | 37.500 | 0.00 | 0.00 | 0.00 | 5.19 |
3808 | 10639 | 3.814504 | AAAGAAAATCCTCTGCCCTCA | 57.185 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
3810 | 10641 | 2.273619 | AGAAAATCCTCTGCCCTCACT | 58.726 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3811 | 10642 | 2.238395 | AGAAAATCCTCTGCCCTCACTC | 59.762 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3812 | 10643 | 0.915364 | AAATCCTCTGCCCTCACTCC | 59.085 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3832 | 10663 | 1.455383 | CCTTCTGCGTTTGCTGGGTT | 61.455 | 55.000 | 0.00 | 0.00 | 43.34 | 4.11 |
3857 | 10688 | 9.853177 | TTACCCAATAATCATTTTTGTTTTGGT | 57.147 | 25.926 | 0.61 | 3.20 | 32.38 | 3.67 |
3858 | 10689 | 8.389779 | ACCCAATAATCATTTTTGTTTTGGTC | 57.610 | 30.769 | 0.61 | 0.00 | 32.38 | 4.02 |
3991 | 11031 | 4.935352 | TGTATGTTTCTTGCCTTTTGCT | 57.065 | 36.364 | 0.00 | 0.00 | 42.00 | 3.91 |
4025 | 11065 | 7.430441 | AGCCGTTGATGTTTACTTTACAAAAT | 58.570 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
4043 | 11083 | 9.959749 | TTACAAAATGTTTCAGGTGATAGTTTC | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 2.78 |
4052 | 11092 | 6.636454 | TCAGGTGATAGTTTCTTATTGGGT | 57.364 | 37.500 | 0.00 | 0.00 | 0.00 | 4.51 |
4058 | 11098 | 9.403583 | GGTGATAGTTTCTTATTGGGTGATTTA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4129 | 11170 | 8.458573 | AATAGAAGTATGTGTTGTTTGGTCAA | 57.541 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
4137 | 11178 | 5.010933 | TGTGTTGTTTGGTCAAAAGAGGTA | 58.989 | 37.500 | 0.00 | 0.00 | 31.33 | 3.08 |
4144 | 11185 | 7.488322 | TGTTTGGTCAAAAGAGGTAAAATCAG | 58.512 | 34.615 | 0.00 | 0.00 | 31.33 | 2.90 |
4147 | 11188 | 5.774690 | TGGTCAAAAGAGGTAAAATCAGCAT | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4148 | 11189 | 6.945435 | TGGTCAAAAGAGGTAAAATCAGCATA | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 3.14 |
4149 | 11190 | 7.121168 | TGGTCAAAAGAGGTAAAATCAGCATAG | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
4150 | 11191 | 7.121315 | GGTCAAAAGAGGTAAAATCAGCATAGT | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
4152 | 11193 | 7.665559 | TCAAAAGAGGTAAAATCAGCATAGTGT | 59.334 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
4154 | 11195 | 9.515226 | AAAAGAGGTAAAATCAGCATAGTGTAA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
4155 | 11196 | 8.494016 | AAGAGGTAAAATCAGCATAGTGTAAC | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 2.50 |
4186 | 11227 | 3.356529 | AAAAGGCATGACGGAGAAGAT | 57.643 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
4187 | 11228 | 4.487714 | AAAAGGCATGACGGAGAAGATA | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
4188 | 11229 | 4.487714 | AAAGGCATGACGGAGAAGATAA | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 1.75 |
4189 | 11230 | 4.487714 | AAGGCATGACGGAGAAGATAAA | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
4192 | 11233 | 3.309954 | GGCATGACGGAGAAGATAAACAC | 59.690 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
4193 | 11234 | 3.932710 | GCATGACGGAGAAGATAAACACA | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
4197 | 11238 | 7.201609 | GCATGACGGAGAAGATAAACACATTTA | 60.202 | 37.037 | 0.00 | 0.00 | 34.78 | 1.40 |
4200 | 11241 | 9.226606 | TGACGGAGAAGATAAACACATTTATTT | 57.773 | 29.630 | 0.00 | 0.00 | 40.42 | 1.40 |
4211 | 11252 | 9.877178 | ATAAACACATTTATTTATTTTGCGGGA | 57.123 | 25.926 | 0.00 | 0.00 | 37.68 | 5.14 |
4212 | 11253 | 7.826260 | AACACATTTATTTATTTTGCGGGAG | 57.174 | 32.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4213 | 11254 | 7.164230 | ACACATTTATTTATTTTGCGGGAGA | 57.836 | 32.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4301 | 11342 | 9.231297 | TGCTTGTATGCCTAAATATATCTTTCC | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
4307 | 11349 | 7.633018 | TGCCTAAATATATCTTTCCAGACCT | 57.367 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4314 | 11356 | 5.643421 | ATATCTTTCCAGACCTTCAGCAT | 57.357 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
4315 | 11357 | 6.753913 | ATATCTTTCCAGACCTTCAGCATA | 57.246 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
4322 | 11364 | 5.918608 | TCCAGACCTTCAGCATATTAGAAC | 58.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4323 | 11365 | 5.059833 | CCAGACCTTCAGCATATTAGAACC | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
4324 | 11366 | 5.396772 | CCAGACCTTCAGCATATTAGAACCA | 60.397 | 44.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4325 | 11367 | 6.294473 | CAGACCTTCAGCATATTAGAACCAT | 58.706 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4326 | 11368 | 6.769822 | CAGACCTTCAGCATATTAGAACCATT | 59.230 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
4327 | 11369 | 7.284034 | CAGACCTTCAGCATATTAGAACCATTT | 59.716 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
4328 | 11370 | 7.836183 | AGACCTTCAGCATATTAGAACCATTTT | 59.164 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4329 | 11371 | 8.366359 | ACCTTCAGCATATTAGAACCATTTTT | 57.634 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
4330 | 11372 | 8.470002 | ACCTTCAGCATATTAGAACCATTTTTC | 58.530 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4331 | 11373 | 8.469200 | CCTTCAGCATATTAGAACCATTTTTCA | 58.531 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
4332 | 11374 | 9.294030 | CTTCAGCATATTAGAACCATTTTTCAC | 57.706 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
4333 | 11375 | 7.471721 | TCAGCATATTAGAACCATTTTTCACG | 58.528 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
4334 | 11376 | 7.335673 | TCAGCATATTAGAACCATTTTTCACGA | 59.664 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
4335 | 11377 | 7.429340 | CAGCATATTAGAACCATTTTTCACGAC | 59.571 | 37.037 | 0.00 | 0.00 | 0.00 | 4.34 |
4336 | 11378 | 6.691388 | GCATATTAGAACCATTTTTCACGACC | 59.309 | 38.462 | 0.00 | 0.00 | 0.00 | 4.79 |
4337 | 11379 | 4.735662 | TTAGAACCATTTTTCACGACCG | 57.264 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
4338 | 11380 | 2.841215 | AGAACCATTTTTCACGACCGA | 58.159 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
4339 | 11381 | 3.207778 | AGAACCATTTTTCACGACCGAA | 58.792 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
4340 | 11382 | 3.818773 | AGAACCATTTTTCACGACCGAAT | 59.181 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
4341 | 11383 | 4.277423 | AGAACCATTTTTCACGACCGAATT | 59.723 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
4342 | 11384 | 4.577834 | ACCATTTTTCACGACCGAATTT | 57.422 | 36.364 | 0.00 | 0.00 | 0.00 | 1.82 |
4343 | 11385 | 4.295051 | ACCATTTTTCACGACCGAATTTG | 58.705 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
4344 | 11386 | 4.202070 | ACCATTTTTCACGACCGAATTTGT | 60.202 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
4345 | 11387 | 4.742659 | CCATTTTTCACGACCGAATTTGTT | 59.257 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
4346 | 11388 | 5.332205 | CCATTTTTCACGACCGAATTTGTTG | 60.332 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4347 | 11389 | 2.392933 | TTCACGACCGAATTTGTTGC | 57.607 | 45.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4348 | 11390 | 1.300481 | TCACGACCGAATTTGTTGCA | 58.700 | 45.000 | 0.00 | 0.00 | 0.00 | 4.08 |
4349 | 11391 | 1.671328 | TCACGACCGAATTTGTTGCAA | 59.329 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
4350 | 11392 | 2.292016 | TCACGACCGAATTTGTTGCAAT | 59.708 | 40.909 | 0.59 | 0.00 | 0.00 | 3.56 |
4351 | 11393 | 3.049206 | CACGACCGAATTTGTTGCAATT | 58.951 | 40.909 | 0.59 | 0.00 | 0.00 | 2.32 |
4352 | 11394 | 4.023963 | TCACGACCGAATTTGTTGCAATTA | 60.024 | 37.500 | 0.59 | 0.00 | 0.00 | 1.40 |
4353 | 11395 | 4.856487 | CACGACCGAATTTGTTGCAATTAT | 59.144 | 37.500 | 0.59 | 0.00 | 0.00 | 1.28 |
4354 | 11396 | 6.024664 | CACGACCGAATTTGTTGCAATTATA | 58.975 | 36.000 | 0.59 | 0.00 | 0.00 | 0.98 |
4355 | 11397 | 6.690957 | CACGACCGAATTTGTTGCAATTATAT | 59.309 | 34.615 | 0.59 | 0.00 | 0.00 | 0.86 |
4356 | 11398 | 7.219917 | CACGACCGAATTTGTTGCAATTATATT | 59.780 | 33.333 | 0.59 | 2.40 | 0.00 | 1.28 |
4357 | 11399 | 8.399425 | ACGACCGAATTTGTTGCAATTATATTA | 58.601 | 29.630 | 0.59 | 0.00 | 0.00 | 0.98 |
4358 | 11400 | 9.393249 | CGACCGAATTTGTTGCAATTATATTAT | 57.607 | 29.630 | 0.59 | 0.00 | 0.00 | 1.28 |
4392 | 11434 | 9.087424 | TGATAAAGATATTTTCTCTCACACACG | 57.913 | 33.333 | 0.00 | 0.00 | 31.78 | 4.49 |
4393 | 11435 | 9.302345 | GATAAAGATATTTTCTCTCACACACGA | 57.698 | 33.333 | 0.00 | 0.00 | 31.78 | 4.35 |
4394 | 11436 | 9.823647 | ATAAAGATATTTTCTCTCACACACGAT | 57.176 | 29.630 | 0.00 | 0.00 | 31.78 | 3.73 |
4395 | 11437 | 7.531280 | AAGATATTTTCTCTCACACACGATG | 57.469 | 36.000 | 0.00 | 0.00 | 31.78 | 3.84 |
4396 | 11438 | 6.634805 | AGATATTTTCTCTCACACACGATGT | 58.365 | 36.000 | 0.00 | 0.00 | 44.81 | 3.06 |
4397 | 11439 | 7.063898 | AAGATATTTTCTCTCACACACGATGTG | 59.936 | 37.037 | 15.53 | 15.53 | 46.62 | 3.21 |
4405 | 11447 | 2.918571 | CACACGATGTGGAAGTGCT | 58.081 | 52.632 | 9.43 | 0.00 | 44.27 | 4.40 |
4406 | 11448 | 2.078849 | CACACGATGTGGAAGTGCTA | 57.921 | 50.000 | 9.43 | 0.00 | 44.27 | 3.49 |
4407 | 11449 | 2.412870 | CACACGATGTGGAAGTGCTAA | 58.587 | 47.619 | 9.43 | 0.00 | 44.27 | 3.09 |
4408 | 11450 | 2.157668 | CACACGATGTGGAAGTGCTAAC | 59.842 | 50.000 | 9.43 | 0.00 | 44.27 | 2.34 |
4409 | 11451 | 2.037251 | ACACGATGTGGAAGTGCTAACT | 59.963 | 45.455 | 1.64 | 0.00 | 39.31 | 2.24 |
4410 | 11452 | 3.257375 | ACACGATGTGGAAGTGCTAACTA | 59.743 | 43.478 | 1.64 | 0.00 | 39.31 | 2.24 |
4411 | 11453 | 4.081642 | ACACGATGTGGAAGTGCTAACTAT | 60.082 | 41.667 | 1.64 | 0.00 | 39.31 | 2.12 |
4412 | 11454 | 5.126545 | ACACGATGTGGAAGTGCTAACTATA | 59.873 | 40.000 | 1.64 | 0.00 | 39.31 | 1.31 |
4413 | 11455 | 6.183360 | ACACGATGTGGAAGTGCTAACTATAT | 60.183 | 38.462 | 1.64 | 0.00 | 39.31 | 0.86 |
4414 | 11456 | 6.144563 | CACGATGTGGAAGTGCTAACTATATG | 59.855 | 42.308 | 0.00 | 0.00 | 34.77 | 1.78 |
4415 | 11457 | 6.183360 | ACGATGTGGAAGTGCTAACTATATGT | 60.183 | 38.462 | 0.00 | 0.00 | 34.77 | 2.29 |
4416 | 11458 | 7.013942 | ACGATGTGGAAGTGCTAACTATATGTA | 59.986 | 37.037 | 0.00 | 0.00 | 34.77 | 2.29 |
4417 | 11459 | 8.029522 | CGATGTGGAAGTGCTAACTATATGTAT | 58.970 | 37.037 | 0.00 | 0.00 | 34.77 | 2.29 |
4418 | 11460 | 9.712305 | GATGTGGAAGTGCTAACTATATGTATT | 57.288 | 33.333 | 0.00 | 0.00 | 34.77 | 1.89 |
4420 | 11462 | 9.325198 | TGTGGAAGTGCTAACTATATGTATTTG | 57.675 | 33.333 | 0.00 | 0.00 | 34.77 | 2.32 |
4421 | 11463 | 8.774586 | GTGGAAGTGCTAACTATATGTATTTGG | 58.225 | 37.037 | 0.00 | 0.00 | 34.77 | 3.28 |
4422 | 11464 | 8.491134 | TGGAAGTGCTAACTATATGTATTTGGT | 58.509 | 33.333 | 0.00 | 0.00 | 34.77 | 3.67 |
4423 | 11465 | 8.774586 | GGAAGTGCTAACTATATGTATTTGGTG | 58.225 | 37.037 | 0.00 | 0.00 | 34.77 | 4.17 |
4424 | 11466 | 9.326413 | GAAGTGCTAACTATATGTATTTGGTGT | 57.674 | 33.333 | 0.00 | 0.00 | 34.77 | 4.16 |
4426 | 11468 | 9.760077 | AGTGCTAACTATATGTATTTGGTGTAC | 57.240 | 33.333 | 0.00 | 0.00 | 33.79 | 2.90 |
4427 | 11469 | 9.537192 | GTGCTAACTATATGTATTTGGTGTACA | 57.463 | 33.333 | 0.00 | 0.00 | 36.58 | 2.90 |
4431 | 11473 | 8.918202 | AACTATATGTATTTGGTGTACATGGG | 57.082 | 34.615 | 0.00 | 2.82 | 41.50 | 4.00 |
4432 | 11474 | 7.458397 | ACTATATGTATTTGGTGTACATGGGG | 58.542 | 38.462 | 0.00 | 2.55 | 41.50 | 4.96 |
4433 | 11475 | 4.601406 | ATGTATTTGGTGTACATGGGGT | 57.399 | 40.909 | 0.00 | 0.00 | 40.32 | 4.95 |
4434 | 11476 | 4.390129 | TGTATTTGGTGTACATGGGGTT | 57.610 | 40.909 | 0.00 | 0.00 | 0.00 | 4.11 |
4435 | 11477 | 4.337145 | TGTATTTGGTGTACATGGGGTTC | 58.663 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
4436 | 11478 | 3.825908 | ATTTGGTGTACATGGGGTTCT | 57.174 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
4437 | 11479 | 3.603965 | TTTGGTGTACATGGGGTTCTT | 57.396 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
4438 | 11480 | 3.603965 | TTGGTGTACATGGGGTTCTTT | 57.396 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
4439 | 11481 | 3.603965 | TGGTGTACATGGGGTTCTTTT | 57.396 | 42.857 | 0.00 | 0.00 | 0.00 | 2.27 |
4440 | 11482 | 3.917300 | TGGTGTACATGGGGTTCTTTTT | 58.083 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
4457 | 11499 | 3.360775 | TTTTTGCGCGTGAAAAACTTG | 57.639 | 38.095 | 14.41 | 0.00 | 32.20 | 3.16 |
4458 | 11500 | 1.983972 | TTTGCGCGTGAAAAACTTGT | 58.016 | 40.000 | 8.43 | 0.00 | 0.00 | 3.16 |
4459 | 11501 | 2.826979 | TTGCGCGTGAAAAACTTGTA | 57.173 | 40.000 | 8.43 | 0.00 | 0.00 | 2.41 |
4460 | 11502 | 3.341857 | TTGCGCGTGAAAAACTTGTAT | 57.658 | 38.095 | 8.43 | 0.00 | 0.00 | 2.29 |
4461 | 11503 | 3.341857 | TGCGCGTGAAAAACTTGTATT | 57.658 | 38.095 | 8.43 | 0.00 | 0.00 | 1.89 |
4462 | 11504 | 4.469625 | TGCGCGTGAAAAACTTGTATTA | 57.530 | 36.364 | 8.43 | 0.00 | 0.00 | 0.98 |
4463 | 11505 | 4.212911 | TGCGCGTGAAAAACTTGTATTAC | 58.787 | 39.130 | 8.43 | 0.00 | 0.00 | 1.89 |
4464 | 11506 | 4.024725 | TGCGCGTGAAAAACTTGTATTACT | 60.025 | 37.500 | 8.43 | 0.00 | 0.00 | 2.24 |
4465 | 11507 | 4.548457 | GCGCGTGAAAAACTTGTATTACTC | 59.452 | 41.667 | 8.43 | 0.00 | 0.00 | 2.59 |
4466 | 11508 | 5.672051 | CGCGTGAAAAACTTGTATTACTCA | 58.328 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
4467 | 11509 | 6.130723 | CGCGTGAAAAACTTGTATTACTCAA | 58.869 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4468 | 11510 | 6.084551 | CGCGTGAAAAACTTGTATTACTCAAC | 59.915 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
4469 | 11511 | 7.130269 | GCGTGAAAAACTTGTATTACTCAACT | 58.870 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4470 | 11512 | 7.320560 | GCGTGAAAAACTTGTATTACTCAACTC | 59.679 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4471 | 11513 | 8.332464 | CGTGAAAAACTTGTATTACTCAACTCA | 58.668 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
4487 | 11529 | 8.324163 | ACTCAACTCATAGAATTACAACCAAC | 57.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.77 |
4488 | 11530 | 7.936847 | ACTCAACTCATAGAATTACAACCAACA | 59.063 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
4489 | 11531 | 8.684386 | TCAACTCATAGAATTACAACCAACAA | 57.316 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
4490 | 11532 | 8.564574 | TCAACTCATAGAATTACAACCAACAAC | 58.435 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
4491 | 11533 | 8.349245 | CAACTCATAGAATTACAACCAACAACA | 58.651 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
4492 | 11534 | 8.099364 | ACTCATAGAATTACAACCAACAACAG | 57.901 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4493 | 11535 | 6.908825 | TCATAGAATTACAACCAACAACAGC | 58.091 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4494 | 11536 | 6.714810 | TCATAGAATTACAACCAACAACAGCT | 59.285 | 34.615 | 0.00 | 0.00 | 0.00 | 4.24 |
4495 | 11537 | 7.880713 | TCATAGAATTACAACCAACAACAGCTA | 59.119 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
4496 | 11538 | 6.560253 | AGAATTACAACCAACAACAGCTAG | 57.440 | 37.500 | 0.00 | 0.00 | 0.00 | 3.42 |
4497 | 11539 | 4.766404 | ATTACAACCAACAACAGCTAGC | 57.234 | 40.909 | 6.62 | 6.62 | 0.00 | 3.42 |
4498 | 11540 | 2.348411 | ACAACCAACAACAGCTAGCT | 57.652 | 45.000 | 12.68 | 12.68 | 0.00 | 3.32 |
4509 | 11551 | 1.731720 | CAGCTAGCTGGACAGTTTCC | 58.268 | 55.000 | 33.06 | 0.00 | 46.13 | 3.13 |
4510 | 11552 | 1.277557 | CAGCTAGCTGGACAGTTTCCT | 59.722 | 52.381 | 33.06 | 0.00 | 46.10 | 3.36 |
4511 | 11553 | 1.552792 | AGCTAGCTGGACAGTTTCCTC | 59.447 | 52.381 | 18.57 | 0.00 | 46.10 | 3.71 |
4512 | 11554 | 1.276421 | GCTAGCTGGACAGTTTCCTCA | 59.724 | 52.381 | 7.70 | 0.00 | 46.10 | 3.86 |
4513 | 11555 | 2.933056 | GCTAGCTGGACAGTTTCCTCAC | 60.933 | 54.545 | 7.70 | 0.00 | 46.10 | 3.51 |
4514 | 11556 | 0.034059 | AGCTGGACAGTTTCCTCACG | 59.966 | 55.000 | 0.82 | 0.00 | 46.10 | 4.35 |
4515 | 11557 | 0.033504 | GCTGGACAGTTTCCTCACGA | 59.966 | 55.000 | 0.82 | 0.00 | 46.10 | 4.35 |
4516 | 11558 | 1.784525 | CTGGACAGTTTCCTCACGAC | 58.215 | 55.000 | 0.00 | 0.00 | 46.10 | 4.34 |
4517 | 11559 | 0.391597 | TGGACAGTTTCCTCACGACC | 59.608 | 55.000 | 0.00 | 0.00 | 46.10 | 4.79 |
4518 | 11560 | 0.391597 | GGACAGTTTCCTCACGACCA | 59.608 | 55.000 | 0.00 | 0.00 | 41.95 | 4.02 |
4519 | 11561 | 1.605712 | GGACAGTTTCCTCACGACCAG | 60.606 | 57.143 | 0.00 | 0.00 | 41.95 | 4.00 |
4520 | 11562 | 1.340248 | GACAGTTTCCTCACGACCAGA | 59.660 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4521 | 11563 | 1.760613 | ACAGTTTCCTCACGACCAGAA | 59.239 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
4522 | 11564 | 2.135933 | CAGTTTCCTCACGACCAGAAC | 58.864 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4523 | 11565 | 1.070289 | AGTTTCCTCACGACCAGAACC | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
4524 | 11566 | 1.070289 | GTTTCCTCACGACCAGAACCT | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
4525 | 11567 | 2.297698 | TTCCTCACGACCAGAACCTA | 57.702 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
4526 | 11568 | 2.297698 | TCCTCACGACCAGAACCTAA | 57.702 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4527 | 11569 | 1.891150 | TCCTCACGACCAGAACCTAAC | 59.109 | 52.381 | 0.00 | 0.00 | 0.00 | 2.34 |
4528 | 11570 | 1.067071 | CCTCACGACCAGAACCTAACC | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 |
4529 | 11571 | 1.616865 | CTCACGACCAGAACCTAACCA | 59.383 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
4530 | 11572 | 2.233922 | CTCACGACCAGAACCTAACCAT | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4531 | 11573 | 2.028476 | TCACGACCAGAACCTAACCATG | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4532 | 11574 | 1.975680 | ACGACCAGAACCTAACCATGT | 59.024 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
4533 | 11575 | 2.028385 | ACGACCAGAACCTAACCATGTC | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4534 | 11576 | 2.233922 | CGACCAGAACCTAACCATGTCT | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4535 | 11577 | 3.446161 | CGACCAGAACCTAACCATGTCTA | 59.554 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
4536 | 11578 | 4.099573 | CGACCAGAACCTAACCATGTCTAT | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
4537 | 11579 | 5.395324 | CGACCAGAACCTAACCATGTCTATT | 60.395 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
4538 | 11580 | 5.990668 | ACCAGAACCTAACCATGTCTATTC | 58.009 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
4539 | 11581 | 5.050490 | CCAGAACCTAACCATGTCTATTCG | 58.950 | 45.833 | 0.00 | 0.00 | 0.00 | 3.34 |
4540 | 11582 | 4.508124 | CAGAACCTAACCATGTCTATTCGC | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
4541 | 11583 | 4.161565 | AGAACCTAACCATGTCTATTCGCA | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 5.10 |
4542 | 11584 | 4.481368 | ACCTAACCATGTCTATTCGCAA | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
4543 | 11585 | 4.839121 | ACCTAACCATGTCTATTCGCAAA | 58.161 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
4544 | 11586 | 5.250200 | ACCTAACCATGTCTATTCGCAAAA | 58.750 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
4545 | 11587 | 5.708230 | ACCTAACCATGTCTATTCGCAAAAA | 59.292 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
48 | 49 | 5.598830 | TGCTCGAACTTCCCTAATCTCTATT | 59.401 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
73 | 74 | 0.036732 | GACCTGCACCTTCCACATCA | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
134 | 135 | 0.765510 | GGTCATCCATGGGTAGGGAC | 59.234 | 60.000 | 13.02 | 8.69 | 40.01 | 4.46 |
155 | 156 | 2.037902 | TGAAATGTTGCGAGGGTGTAGA | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
166 | 167 | 3.641437 | TGCTTACTGGTGAAATGTTGC | 57.359 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
176 | 177 | 0.609131 | AGCCGCAATTGCTTACTGGT | 60.609 | 50.000 | 26.86 | 12.86 | 34.87 | 4.00 |
197 | 198 | 2.235402 | CCCAAGAATCTTTTGCCTGCAT | 59.765 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
205 | 206 | 5.066913 | AGGAGTGTTCCCAAGAATCTTTT | 57.933 | 39.130 | 0.00 | 0.00 | 45.24 | 2.27 |
248 | 249 | 1.416030 | TGCAAGAGCCTAGACACACAA | 59.584 | 47.619 | 0.00 | 0.00 | 41.13 | 3.33 |
313 | 314 | 7.765695 | TCAGGAAGAAAATTCAGCATTTAGT | 57.234 | 32.000 | 0.00 | 0.00 | 33.60 | 2.24 |
355 | 356 | 6.056428 | ACCAAAACAGACACGAAAATCTAC | 57.944 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
414 | 415 | 4.565564 | GGACTTTGAAATTCATGCTCATGC | 59.434 | 41.667 | 0.00 | 0.00 | 38.65 | 4.06 |
477 | 479 | 1.557269 | CCTTGCAGTCCAGGCTAGGT | 61.557 | 60.000 | 6.70 | 0.00 | 45.36 | 3.08 |
480 | 482 | 0.324943 | GAACCTTGCAGTCCAGGCTA | 59.675 | 55.000 | 1.89 | 0.00 | 0.00 | 3.93 |
486 | 488 | 1.531578 | GTTTCGAGAACCTTGCAGTCC | 59.468 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
490 | 492 | 2.872245 | CAAGAGTTTCGAGAACCTTGCA | 59.128 | 45.455 | 17.46 | 0.00 | 0.00 | 4.08 |
548 | 551 | 5.133941 | TGCTCCATCTACTCGAATCTTAGT | 58.866 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
578 | 581 | 9.636879 | ACACTGAAAGATCTAATATGATGATCG | 57.363 | 33.333 | 0.00 | 0.00 | 40.84 | 3.69 |
608 | 613 | 3.921119 | TGTCATGTTGAATCCTTGCAC | 57.079 | 42.857 | 0.00 | 0.00 | 0.00 | 4.57 |
679 | 684 | 0.447801 | CACGCCATAGGTTCAAGCAC | 59.552 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
716 | 721 | 5.869579 | ACGGGATAGCAATAAATCATCTGT | 58.130 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
719 | 724 | 6.801539 | TTGACGGGATAGCAATAAATCATC | 57.198 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
746 | 751 | 2.204463 | TCCCTTGCAATCCACCTGATA | 58.796 | 47.619 | 0.00 | 0.00 | 31.83 | 2.15 |
762 | 770 | 3.073946 | TCTTTTCCCGAAAGATGTTCCCT | 59.926 | 43.478 | 0.00 | 0.00 | 46.69 | 4.20 |
775 | 783 | 2.147958 | TGTCGACCATTTCTTTTCCCG | 58.852 | 47.619 | 14.12 | 0.00 | 0.00 | 5.14 |
787 | 795 | 5.003160 | ACAAGAATGAAATGATGTCGACCA | 58.997 | 37.500 | 14.12 | 4.89 | 0.00 | 4.02 |
908 | 2520 | 6.464222 | TCCTACAGAAAGACCAGTGTATTTG | 58.536 | 40.000 | 0.00 | 0.00 | 36.11 | 2.32 |
911 | 2523 | 5.364157 | GGATCCTACAGAAAGACCAGTGTAT | 59.636 | 44.000 | 3.84 | 0.00 | 0.00 | 2.29 |
912 | 2524 | 4.710375 | GGATCCTACAGAAAGACCAGTGTA | 59.290 | 45.833 | 3.84 | 0.00 | 0.00 | 2.90 |
988 | 2607 | 2.258591 | CGTCAGTGGAGTGTCGGG | 59.741 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
990 | 2609 | 2.430921 | GCCGTCAGTGGAGTGTCG | 60.431 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
991 | 2610 | 1.373497 | CTGCCGTCAGTGGAGTGTC | 60.373 | 63.158 | 0.00 | 0.00 | 35.61 | 3.67 |
992 | 2611 | 2.737180 | CTGCCGTCAGTGGAGTGT | 59.263 | 61.111 | 0.00 | 0.00 | 35.61 | 3.55 |
1026 | 2665 | 3.186047 | GTGGTCGATTCGCGGTGG | 61.186 | 66.667 | 6.13 | 0.00 | 41.33 | 4.61 |
1088 | 2727 | 1.623834 | GGTGTCAGGAGAAGGGAGGAT | 60.624 | 57.143 | 0.00 | 0.00 | 0.00 | 3.24 |
1090 | 2729 | 0.252467 | AGGTGTCAGGAGAAGGGAGG | 60.252 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1106 | 2745 | 0.670854 | GCGAGAAAAGCGGAAGAGGT | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1151 | 2790 | 4.305956 | CACCCAAGGGCCAAGGCT | 62.306 | 66.667 | 11.40 | 0.00 | 41.60 | 4.58 |
1265 | 2904 | 2.383855 | GCTAGCAAGAGAGGAAGAGGA | 58.616 | 52.381 | 10.63 | 0.00 | 0.00 | 3.71 |
1288 | 2927 | 1.067974 | GGAAACCCAAACCAAGAACCG | 59.932 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
1393 | 3050 | 4.094294 | CCAACAGAACACAACGAGAAGAAA | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
1410 | 3067 | 3.073678 | TCGAACATCAACCATCCAACAG | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1499 | 3174 | 2.290287 | ACCGGCTGCCAGTGTGATA | 61.290 | 57.895 | 20.29 | 0.00 | 0.00 | 2.15 |
1617 | 3298 | 0.249120 | CCACAGCATTACCTCCACGA | 59.751 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1620 | 3301 | 1.207488 | AGGCCACAGCATTACCTCCA | 61.207 | 55.000 | 5.01 | 0.00 | 42.56 | 3.86 |
1666 | 3355 | 2.047655 | AAAGCGAACGCATCCGGA | 60.048 | 55.556 | 20.66 | 6.61 | 44.88 | 5.14 |
1671 | 3360 | 1.594862 | GCTCATAGAAAGCGAACGCAT | 59.405 | 47.619 | 20.66 | 6.54 | 44.88 | 4.73 |
1714 | 3403 | 1.021390 | CAGCATTTCCCTCGCGAAGT | 61.021 | 55.000 | 11.33 | 0.00 | 0.00 | 3.01 |
1797 | 3486 | 3.490526 | CCCTGCAAAACAAAGAATCAACG | 59.509 | 43.478 | 0.00 | 0.00 | 0.00 | 4.10 |
2500 | 7548 | 1.674611 | GGTCGTCGCTGATGTTCACG | 61.675 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2559 | 7607 | 1.216175 | ACCATGGATCACCCTTGATGG | 59.784 | 52.381 | 21.47 | 0.00 | 42.95 | 3.51 |
2761 | 7818 | 1.812686 | TAGACACACTGACCCACCGC | 61.813 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2779 | 7836 | 1.991167 | CTGGTTAGCCCCCACGGTA | 60.991 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
2860 | 7917 | 1.478631 | ACGAGATCTGATCACCTGCA | 58.521 | 50.000 | 19.12 | 0.00 | 0.00 | 4.41 |
2861 | 7918 | 2.100584 | AGAACGAGATCTGATCACCTGC | 59.899 | 50.000 | 19.12 | 2.68 | 0.00 | 4.85 |
2862 | 7919 | 4.111198 | CAAGAACGAGATCTGATCACCTG | 58.889 | 47.826 | 19.12 | 8.29 | 0.00 | 4.00 |
2863 | 7920 | 3.131933 | CCAAGAACGAGATCTGATCACCT | 59.868 | 47.826 | 19.12 | 3.91 | 0.00 | 4.00 |
2903 | 7960 | 3.869310 | AGCCATACCCATACTCCATACA | 58.131 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
2911 | 7968 | 4.286032 | TCCTTGTCATAGCCATACCCATAC | 59.714 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
2912 | 7969 | 4.498493 | TCCTTGTCATAGCCATACCCATA | 58.502 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
2913 | 7970 | 3.326521 | TCCTTGTCATAGCCATACCCAT | 58.673 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2914 | 7971 | 2.705658 | CTCCTTGTCATAGCCATACCCA | 59.294 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2915 | 7972 | 2.972713 | TCTCCTTGTCATAGCCATACCC | 59.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2916 | 7973 | 4.381411 | GTTCTCCTTGTCATAGCCATACC | 58.619 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
3057 | 9274 | 5.271625 | CAGCTTGCATAGAAATAACAGCAG | 58.728 | 41.667 | 2.87 | 0.00 | 33.14 | 4.24 |
3058 | 9275 | 4.439153 | GCAGCTTGCATAGAAATAACAGCA | 60.439 | 41.667 | 2.87 | 0.00 | 44.26 | 4.41 |
3094 | 9312 | 6.406692 | ACAATAACATCTATAGCACGGTCT | 57.593 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
3252 | 9554 | 5.824624 | ACCATAATGAGTTCAGGCATTAGTG | 59.175 | 40.000 | 0.00 | 0.00 | 39.51 | 2.74 |
3286 | 9613 | 3.472652 | ACCGATGCAGTTAACAAGTTGA | 58.527 | 40.909 | 10.54 | 0.00 | 0.00 | 3.18 |
3290 | 9617 | 4.854399 | TGAAAACCGATGCAGTTAACAAG | 58.146 | 39.130 | 8.61 | 0.88 | 0.00 | 3.16 |
3345 | 9673 | 7.913789 | ACCTAGTTCATGTAAAACAGACCATA | 58.086 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
3359 | 9687 | 6.754209 | CAGCTAACAGAGTAACCTAGTTCATG | 59.246 | 42.308 | 0.00 | 0.00 | 0.00 | 3.07 |
3454 | 9783 | 1.002468 | CACAACAACCACAGCACTAGC | 60.002 | 52.381 | 0.00 | 0.00 | 42.56 | 3.42 |
3462 | 9791 | 2.868899 | TCCATATGCACAACAACCACA | 58.131 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
3644 | 9975 | 7.769044 | ACATGTTCCACTGTCTAATACATAACC | 59.231 | 37.037 | 0.00 | 0.00 | 37.50 | 2.85 |
3648 | 9979 | 9.905713 | ATAAACATGTTCCACTGTCTAATACAT | 57.094 | 29.630 | 12.39 | 0.00 | 37.50 | 2.29 |
3698 | 10032 | 9.305110 | GTTTTCGAATGCAAATGTCAAATAAAG | 57.695 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
3707 | 10041 | 7.144661 | TCAGTATTGTTTTCGAATGCAAATGT | 58.855 | 30.769 | 15.55 | 5.84 | 0.00 | 2.71 |
3718 | 10547 | 6.142139 | TGCAAATGACTCAGTATTGTTTTCG | 58.858 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3779 | 10610 | 7.385205 | GGGCAGAGGATTTTCTTTTTAGAAAAC | 59.615 | 37.037 | 13.48 | 8.80 | 46.40 | 2.43 |
3790 | 10621 | 2.238395 | GAGTGAGGGCAGAGGATTTTCT | 59.762 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3806 | 10637 | 0.250295 | CAAACGCAGAAGGGGAGTGA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3808 | 10639 | 1.600916 | GCAAACGCAGAAGGGGAGT | 60.601 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
3810 | 10641 | 1.600636 | CAGCAAACGCAGAAGGGGA | 60.601 | 57.895 | 0.00 | 0.00 | 0.00 | 4.81 |
3811 | 10642 | 2.629656 | CCAGCAAACGCAGAAGGGG | 61.630 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
3812 | 10643 | 2.629656 | CCCAGCAAACGCAGAAGGG | 61.630 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
3832 | 10663 | 9.495572 | GACCAAAACAAAAATGATTATTGGGTA | 57.504 | 29.630 | 0.00 | 0.00 | 40.21 | 3.69 |
3856 | 10687 | 8.865420 | AGGGAATAGAAAGGAAAGTAAAAGAC | 57.135 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3857 | 10688 | 8.891501 | AGAGGGAATAGAAAGGAAAGTAAAAGA | 58.108 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3858 | 10689 | 9.521841 | AAGAGGGAATAGAAAGGAAAGTAAAAG | 57.478 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3991 | 11031 | 8.951787 | AGTAAACATCAACGGCTTATGTATAA | 57.048 | 30.769 | 0.00 | 0.00 | 33.59 | 0.98 |
4014 | 11054 | 9.131791 | ACTATCACCTGAAACATTTTGTAAAGT | 57.868 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4025 | 11065 | 7.393234 | CCCAATAAGAAACTATCACCTGAAACA | 59.607 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
4103 | 11143 | 9.562408 | TTGACCAAACAACACATACTTCTATTA | 57.438 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
4104 | 11144 | 8.458573 | TTGACCAAACAACACATACTTCTATT | 57.541 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
4124 | 11165 | 5.705609 | TGCTGATTTTACCTCTTTTGACC | 57.294 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
4125 | 11166 | 7.965107 | CACTATGCTGATTTTACCTCTTTTGAC | 59.035 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
4129 | 11170 | 8.947115 | GTTACACTATGCTGATTTTACCTCTTT | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
4165 | 11206 | 3.140325 | TCTTCTCCGTCATGCCTTTTT | 57.860 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
4167 | 11208 | 4.487714 | TTATCTTCTCCGTCATGCCTTT | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 3.11 |
4168 | 11209 | 4.192317 | GTTTATCTTCTCCGTCATGCCTT | 58.808 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
4169 | 11210 | 3.197766 | TGTTTATCTTCTCCGTCATGCCT | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
4170 | 11211 | 3.309954 | GTGTTTATCTTCTCCGTCATGCC | 59.690 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
4171 | 11212 | 3.932710 | TGTGTTTATCTTCTCCGTCATGC | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
4172 | 11213 | 6.668541 | AATGTGTTTATCTTCTCCGTCATG | 57.331 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
4173 | 11214 | 8.964476 | ATAAATGTGTTTATCTTCTCCGTCAT | 57.036 | 30.769 | 0.00 | 0.00 | 36.06 | 3.06 |
4186 | 11227 | 9.360093 | CTCCCGCAAAATAAATAAATGTGTTTA | 57.640 | 29.630 | 0.00 | 0.00 | 34.50 | 2.01 |
4187 | 11228 | 8.091449 | TCTCCCGCAAAATAAATAAATGTGTTT | 58.909 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
4188 | 11229 | 7.607250 | TCTCCCGCAAAATAAATAAATGTGTT | 58.393 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
4189 | 11230 | 7.164230 | TCTCCCGCAAAATAAATAAATGTGT | 57.836 | 32.000 | 0.00 | 0.00 | 0.00 | 3.72 |
4197 | 11238 | 8.062065 | TGTTTATCTTCTCCCGCAAAATAAAT | 57.938 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
4200 | 11241 | 8.918202 | ATATGTTTATCTTCTCCCGCAAAATA | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
4202 | 11243 | 7.639113 | AATATGTTTATCTTCTCCCGCAAAA | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
4204 | 11245 | 6.826231 | TGAAATATGTTTATCTTCTCCCGCAA | 59.174 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
4205 | 11246 | 6.353323 | TGAAATATGTTTATCTTCTCCCGCA | 58.647 | 36.000 | 0.00 | 0.00 | 0.00 | 5.69 |
4206 | 11247 | 6.861065 | TGAAATATGTTTATCTTCTCCCGC | 57.139 | 37.500 | 0.00 | 0.00 | 0.00 | 6.13 |
4207 | 11248 | 9.929180 | TCTATGAAATATGTTTATCTTCTCCCG | 57.071 | 33.333 | 0.00 | 0.00 | 0.00 | 5.14 |
4260 | 11301 | 9.740239 | GGCATACAAGCATTAATATTCCATATG | 57.260 | 33.333 | 0.00 | 0.00 | 35.83 | 1.78 |
4264 | 11305 | 8.932434 | TTAGGCATACAAGCATTAATATTCCA | 57.068 | 30.769 | 0.00 | 0.00 | 35.83 | 3.53 |
4276 | 11317 | 9.231297 | TGGAAAGATATATTTAGGCATACAAGC | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
4279 | 11320 | 9.944376 | GTCTGGAAAGATATATTTAGGCATACA | 57.056 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4284 | 11325 | 8.157476 | TGAAGGTCTGGAAAGATATATTTAGGC | 58.843 | 37.037 | 0.00 | 0.00 | 0.00 | 3.93 |
4294 | 11335 | 5.643421 | ATATGCTGAAGGTCTGGAAAGAT | 57.357 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
4296 | 11337 | 6.586344 | TCTAATATGCTGAAGGTCTGGAAAG | 58.414 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4299 | 11340 | 5.163301 | GGTTCTAATATGCTGAAGGTCTGGA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4301 | 11342 | 5.674525 | TGGTTCTAATATGCTGAAGGTCTG | 58.325 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4307 | 11349 | 7.967854 | CGTGAAAAATGGTTCTAATATGCTGAA | 59.032 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
4314 | 11356 | 6.164876 | TCGGTCGTGAAAAATGGTTCTAATA | 58.835 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
4315 | 11357 | 4.998672 | TCGGTCGTGAAAAATGGTTCTAAT | 59.001 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
4322 | 11364 | 4.295051 | ACAAATTCGGTCGTGAAAAATGG | 58.705 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4323 | 11365 | 5.655576 | CAACAAATTCGGTCGTGAAAAATG | 58.344 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
4324 | 11366 | 4.208253 | GCAACAAATTCGGTCGTGAAAAAT | 59.792 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
4325 | 11367 | 3.548268 | GCAACAAATTCGGTCGTGAAAAA | 59.452 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
4326 | 11368 | 3.109619 | GCAACAAATTCGGTCGTGAAAA | 58.890 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
4327 | 11369 | 2.097629 | TGCAACAAATTCGGTCGTGAAA | 59.902 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
4328 | 11370 | 1.671328 | TGCAACAAATTCGGTCGTGAA | 59.329 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
4329 | 11371 | 1.300481 | TGCAACAAATTCGGTCGTGA | 58.700 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4330 | 11372 | 2.112475 | TTGCAACAAATTCGGTCGTG | 57.888 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4331 | 11373 | 3.363341 | AATTGCAACAAATTCGGTCGT | 57.637 | 38.095 | 0.00 | 0.00 | 0.00 | 4.34 |
4332 | 11374 | 7.678194 | AATATAATTGCAACAAATTCGGTCG | 57.322 | 32.000 | 0.00 | 0.00 | 32.16 | 4.79 |
4366 | 11408 | 9.087424 | CGTGTGTGAGAGAAAATATCTTTATCA | 57.913 | 33.333 | 7.35 | 0.00 | 38.96 | 2.15 |
4367 | 11409 | 9.302345 | TCGTGTGTGAGAGAAAATATCTTTATC | 57.698 | 33.333 | 0.00 | 0.00 | 38.96 | 1.75 |
4368 | 11410 | 9.823647 | ATCGTGTGTGAGAGAAAATATCTTTAT | 57.176 | 29.630 | 0.00 | 0.00 | 38.96 | 1.40 |
4369 | 11411 | 9.087424 | CATCGTGTGTGAGAGAAAATATCTTTA | 57.913 | 33.333 | 0.00 | 0.00 | 38.96 | 1.85 |
4370 | 11412 | 7.604164 | ACATCGTGTGTGAGAGAAAATATCTTT | 59.396 | 33.333 | 0.00 | 0.00 | 40.28 | 2.52 |
4371 | 11413 | 7.099764 | ACATCGTGTGTGAGAGAAAATATCTT | 58.900 | 34.615 | 0.00 | 0.00 | 40.28 | 2.40 |
4372 | 11414 | 6.634805 | ACATCGTGTGTGAGAGAAAATATCT | 58.365 | 36.000 | 0.00 | 0.00 | 40.28 | 1.98 |
4373 | 11415 | 6.893958 | ACATCGTGTGTGAGAGAAAATATC | 57.106 | 37.500 | 0.00 | 0.00 | 40.28 | 1.63 |
4386 | 11428 | 0.106708 | AGCACTTCCACATCGTGTGT | 59.893 | 50.000 | 14.25 | 4.34 | 46.45 | 3.72 |
4387 | 11429 | 4.854405 | TAGTTAGCACTTCCACATCGTGTG | 60.854 | 45.833 | 10.11 | 10.11 | 40.05 | 3.82 |
4388 | 11430 | 2.037251 | AGTTAGCACTTCCACATCGTGT | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
4389 | 11431 | 2.688507 | AGTTAGCACTTCCACATCGTG | 58.311 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
4390 | 11432 | 4.737855 | ATAGTTAGCACTTCCACATCGT | 57.262 | 40.909 | 0.00 | 0.00 | 34.06 | 3.73 |
4391 | 11433 | 6.216569 | ACATATAGTTAGCACTTCCACATCG | 58.783 | 40.000 | 0.00 | 0.00 | 34.06 | 3.84 |
4392 | 11434 | 9.712305 | AATACATATAGTTAGCACTTCCACATC | 57.288 | 33.333 | 0.00 | 0.00 | 34.06 | 3.06 |
4394 | 11436 | 9.325198 | CAAATACATATAGTTAGCACTTCCACA | 57.675 | 33.333 | 0.00 | 0.00 | 34.06 | 4.17 |
4395 | 11437 | 8.774586 | CCAAATACATATAGTTAGCACTTCCAC | 58.225 | 37.037 | 0.00 | 0.00 | 34.06 | 4.02 |
4396 | 11438 | 8.491134 | ACCAAATACATATAGTTAGCACTTCCA | 58.509 | 33.333 | 0.00 | 0.00 | 34.06 | 3.53 |
4397 | 11439 | 8.774586 | CACCAAATACATATAGTTAGCACTTCC | 58.225 | 37.037 | 0.00 | 0.00 | 34.06 | 3.46 |
4398 | 11440 | 9.326413 | ACACCAAATACATATAGTTAGCACTTC | 57.674 | 33.333 | 0.00 | 0.00 | 34.06 | 3.01 |
4400 | 11442 | 9.760077 | GTACACCAAATACATATAGTTAGCACT | 57.240 | 33.333 | 0.00 | 0.00 | 36.99 | 4.40 |
4401 | 11443 | 9.537192 | TGTACACCAAATACATATAGTTAGCAC | 57.463 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
4406 | 11448 | 7.942341 | CCCCATGTACACCAAATACATATAGTT | 59.058 | 37.037 | 0.00 | 0.00 | 40.51 | 2.24 |
4407 | 11449 | 7.073215 | ACCCCATGTACACCAAATACATATAGT | 59.927 | 37.037 | 0.00 | 0.00 | 40.51 | 2.12 |
4408 | 11450 | 7.458397 | ACCCCATGTACACCAAATACATATAG | 58.542 | 38.462 | 0.00 | 0.00 | 40.51 | 1.31 |
4409 | 11451 | 7.395525 | ACCCCATGTACACCAAATACATATA | 57.604 | 36.000 | 0.00 | 0.00 | 40.51 | 0.86 |
4410 | 11452 | 6.274322 | ACCCCATGTACACCAAATACATAT | 57.726 | 37.500 | 0.00 | 0.00 | 40.51 | 1.78 |
4411 | 11453 | 5.718801 | ACCCCATGTACACCAAATACATA | 57.281 | 39.130 | 0.00 | 0.00 | 40.51 | 2.29 |
4412 | 11454 | 4.601406 | ACCCCATGTACACCAAATACAT | 57.399 | 40.909 | 0.00 | 0.00 | 42.68 | 2.29 |
4413 | 11455 | 4.043561 | AGAACCCCATGTACACCAAATACA | 59.956 | 41.667 | 0.00 | 0.00 | 36.98 | 2.29 |
4414 | 11456 | 4.595986 | AGAACCCCATGTACACCAAATAC | 58.404 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
4415 | 11457 | 4.938575 | AGAACCCCATGTACACCAAATA | 57.061 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
4416 | 11458 | 3.825908 | AGAACCCCATGTACACCAAAT | 57.174 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
4417 | 11459 | 3.603965 | AAGAACCCCATGTACACCAAA | 57.396 | 42.857 | 0.00 | 0.00 | 0.00 | 3.28 |
4418 | 11460 | 3.603965 | AAAGAACCCCATGTACACCAA | 57.396 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
4419 | 11461 | 3.603965 | AAAAGAACCCCATGTACACCA | 57.396 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
4437 | 11479 | 2.731976 | ACAAGTTTTTCACGCGCAAAAA | 59.268 | 36.364 | 19.81 | 19.81 | 31.70 | 1.94 |
4438 | 11480 | 2.329379 | ACAAGTTTTTCACGCGCAAAA | 58.671 | 38.095 | 5.73 | 9.41 | 0.00 | 2.44 |
4439 | 11481 | 1.983972 | ACAAGTTTTTCACGCGCAAA | 58.016 | 40.000 | 5.73 | 2.18 | 0.00 | 3.68 |
4440 | 11482 | 2.826979 | TACAAGTTTTTCACGCGCAA | 57.173 | 40.000 | 5.73 | 0.00 | 0.00 | 4.85 |
4441 | 11483 | 3.341857 | AATACAAGTTTTTCACGCGCA | 57.658 | 38.095 | 5.73 | 0.00 | 0.00 | 6.09 |
4442 | 11484 | 4.460505 | AGTAATACAAGTTTTTCACGCGC | 58.539 | 39.130 | 5.73 | 0.00 | 0.00 | 6.86 |
4443 | 11485 | 5.672051 | TGAGTAATACAAGTTTTTCACGCG | 58.328 | 37.500 | 3.53 | 3.53 | 0.00 | 6.01 |
4444 | 11486 | 7.130269 | AGTTGAGTAATACAAGTTTTTCACGC | 58.870 | 34.615 | 0.00 | 0.00 | 0.00 | 5.34 |
4445 | 11487 | 8.332464 | TGAGTTGAGTAATACAAGTTTTTCACG | 58.668 | 33.333 | 0.00 | 0.00 | 32.12 | 4.35 |
4461 | 11503 | 9.431887 | GTTGGTTGTAATTCTATGAGTTGAGTA | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
4462 | 11504 | 7.936847 | TGTTGGTTGTAATTCTATGAGTTGAGT | 59.063 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
4463 | 11505 | 8.322906 | TGTTGGTTGTAATTCTATGAGTTGAG | 57.677 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
4464 | 11506 | 8.564574 | GTTGTTGGTTGTAATTCTATGAGTTGA | 58.435 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
4465 | 11507 | 8.349245 | TGTTGTTGGTTGTAATTCTATGAGTTG | 58.651 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
4466 | 11508 | 8.458573 | TGTTGTTGGTTGTAATTCTATGAGTT | 57.541 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
4467 | 11509 | 7.308589 | GCTGTTGTTGGTTGTAATTCTATGAGT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
4468 | 11510 | 7.023575 | GCTGTTGTTGGTTGTAATTCTATGAG | 58.976 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
4469 | 11511 | 6.714810 | AGCTGTTGTTGGTTGTAATTCTATGA | 59.285 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
4470 | 11512 | 6.913170 | AGCTGTTGTTGGTTGTAATTCTATG | 58.087 | 36.000 | 0.00 | 0.00 | 0.00 | 2.23 |
4471 | 11513 | 7.148239 | GCTAGCTGTTGTTGGTTGTAATTCTAT | 60.148 | 37.037 | 7.70 | 0.00 | 0.00 | 1.98 |
4472 | 11514 | 6.148811 | GCTAGCTGTTGTTGGTTGTAATTCTA | 59.851 | 38.462 | 7.70 | 0.00 | 0.00 | 2.10 |
4473 | 11515 | 5.048713 | GCTAGCTGTTGTTGGTTGTAATTCT | 60.049 | 40.000 | 7.70 | 0.00 | 0.00 | 2.40 |
4474 | 11516 | 5.048713 | AGCTAGCTGTTGTTGGTTGTAATTC | 60.049 | 40.000 | 18.57 | 0.00 | 0.00 | 2.17 |
4475 | 11517 | 4.827284 | AGCTAGCTGTTGTTGGTTGTAATT | 59.173 | 37.500 | 18.57 | 0.00 | 0.00 | 1.40 |
4476 | 11518 | 4.216257 | CAGCTAGCTGTTGTTGGTTGTAAT | 59.784 | 41.667 | 32.46 | 0.00 | 39.10 | 1.89 |
4477 | 11519 | 3.563808 | CAGCTAGCTGTTGTTGGTTGTAA | 59.436 | 43.478 | 32.46 | 0.00 | 39.10 | 2.41 |
4478 | 11520 | 3.138304 | CAGCTAGCTGTTGTTGGTTGTA | 58.862 | 45.455 | 32.46 | 0.00 | 39.10 | 2.41 |
4479 | 11521 | 1.949525 | CAGCTAGCTGTTGTTGGTTGT | 59.050 | 47.619 | 32.46 | 0.00 | 39.10 | 3.32 |
4480 | 11522 | 1.267806 | CCAGCTAGCTGTTGTTGGTTG | 59.732 | 52.381 | 36.14 | 18.21 | 42.15 | 3.77 |
4481 | 11523 | 1.142870 | TCCAGCTAGCTGTTGTTGGTT | 59.857 | 47.619 | 36.14 | 1.83 | 42.15 | 3.67 |
4482 | 11524 | 0.764890 | TCCAGCTAGCTGTTGTTGGT | 59.235 | 50.000 | 36.14 | 2.61 | 42.15 | 3.67 |
4483 | 11525 | 1.160137 | GTCCAGCTAGCTGTTGTTGG | 58.840 | 55.000 | 36.14 | 24.18 | 42.15 | 3.77 |
4484 | 11526 | 1.802960 | CTGTCCAGCTAGCTGTTGTTG | 59.197 | 52.381 | 36.14 | 23.54 | 42.15 | 3.33 |
4485 | 11527 | 1.417890 | ACTGTCCAGCTAGCTGTTGTT | 59.582 | 47.619 | 36.14 | 17.90 | 42.15 | 2.83 |
4486 | 11528 | 1.051812 | ACTGTCCAGCTAGCTGTTGT | 58.948 | 50.000 | 36.14 | 25.91 | 42.15 | 3.32 |
4487 | 11529 | 2.175878 | AACTGTCCAGCTAGCTGTTG | 57.824 | 50.000 | 36.14 | 24.84 | 42.15 | 3.33 |
4488 | 11530 | 2.551071 | GGAAACTGTCCAGCTAGCTGTT | 60.551 | 50.000 | 36.14 | 25.16 | 46.97 | 3.16 |
4489 | 11531 | 1.002544 | GGAAACTGTCCAGCTAGCTGT | 59.997 | 52.381 | 36.14 | 20.52 | 46.97 | 4.40 |
4490 | 11532 | 1.731720 | GGAAACTGTCCAGCTAGCTG | 58.268 | 55.000 | 33.58 | 33.58 | 46.97 | 4.24 |
4500 | 11542 | 1.340248 | TCTGGTCGTGAGGAAACTGTC | 59.660 | 52.381 | 0.00 | 0.00 | 44.43 | 3.51 |
4501 | 11543 | 1.410004 | TCTGGTCGTGAGGAAACTGT | 58.590 | 50.000 | 0.00 | 0.00 | 44.43 | 3.55 |
4502 | 11544 | 2.135933 | GTTCTGGTCGTGAGGAAACTG | 58.864 | 52.381 | 0.00 | 0.00 | 44.43 | 3.16 |
4504 | 11546 | 1.070289 | AGGTTCTGGTCGTGAGGAAAC | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
4505 | 11547 | 1.420430 | AGGTTCTGGTCGTGAGGAAA | 58.580 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
4506 | 11548 | 2.297698 | TAGGTTCTGGTCGTGAGGAA | 57.702 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4507 | 11549 | 1.891150 | GTTAGGTTCTGGTCGTGAGGA | 59.109 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
4508 | 11550 | 1.067071 | GGTTAGGTTCTGGTCGTGAGG | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
4509 | 11551 | 1.616865 | TGGTTAGGTTCTGGTCGTGAG | 59.383 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4510 | 11552 | 1.707106 | TGGTTAGGTTCTGGTCGTGA | 58.293 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4511 | 11553 | 2.289444 | ACATGGTTAGGTTCTGGTCGTG | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4512 | 11554 | 1.975680 | ACATGGTTAGGTTCTGGTCGT | 59.024 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
4513 | 11555 | 2.233922 | AGACATGGTTAGGTTCTGGTCG | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4514 | 11556 | 3.983044 | AGACATGGTTAGGTTCTGGTC | 57.017 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4515 | 11557 | 5.395324 | CGAATAGACATGGTTAGGTTCTGGT | 60.395 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4516 | 11558 | 5.050490 | CGAATAGACATGGTTAGGTTCTGG | 58.950 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
4517 | 11559 | 4.508124 | GCGAATAGACATGGTTAGGTTCTG | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
4518 | 11560 | 4.161565 | TGCGAATAGACATGGTTAGGTTCT | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4519 | 11561 | 4.439057 | TGCGAATAGACATGGTTAGGTTC | 58.561 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
4520 | 11562 | 4.481368 | TGCGAATAGACATGGTTAGGTT | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
4521 | 11563 | 4.481368 | TTGCGAATAGACATGGTTAGGT | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 3.08 |
4522 | 11564 | 5.811399 | TTTTGCGAATAGACATGGTTAGG | 57.189 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
4547 | 11589 | 6.345096 | CCATGACATGGTTAGGTTCTTTTT | 57.655 | 37.500 | 24.15 | 0.00 | 45.54 | 1.94 |
4548 | 11590 | 5.982890 | CCATGACATGGTTAGGTTCTTTT | 57.017 | 39.130 | 24.15 | 0.00 | 45.54 | 2.27 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.