Multiple sequence alignment - TraesCS1B01G426100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G426100 chr1B 100.000 2845 0 0 1 2845 652303238 652300394 0.000000e+00 5254.0
1 TraesCS1B01G426100 chr1D 92.477 2592 142 23 6 2566 470045729 470043160 0.000000e+00 3657.0
2 TraesCS1B01G426100 chr1D 79.511 532 90 15 1571 2085 470034374 470033845 7.490000e-96 361.0
3 TraesCS1B01G426100 chr1D 87.671 292 29 1 2561 2845 470036546 470036255 1.630000e-87 333.0
4 TraesCS1B01G426100 chr1A 91.536 2351 160 16 6 2332 563610983 563608648 0.000000e+00 3203.0
5 TraesCS1B01G426100 chr1A 88.147 464 47 2 2390 2845 563608652 563608189 1.930000e-151 545.0
6 TraesCS1B01G426100 chr1A 77.799 536 91 22 1571 2085 563606184 563605656 3.560000e-79 305.0
7 TraesCS1B01G426100 chr2A 84.906 53 8 0 260 312 385423952 385423900 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G426100 chr1B 652300394 652303238 2844 True 5254 5254 100.000000 1 2845 1 chr1B.!!$R1 2844
1 TraesCS1B01G426100 chr1D 470043160 470045729 2569 True 3657 3657 92.477000 6 2566 1 chr1D.!!$R1 2560
2 TraesCS1B01G426100 chr1D 470033845 470036546 2701 True 347 361 83.591000 1571 2845 2 chr1D.!!$R2 1274
3 TraesCS1B01G426100 chr1A 563605656 563610983 5327 True 1351 3203 85.827333 6 2845 3 chr1A.!!$R1 2839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 839 0.178967 TGGCTGGCAAGATTTCACCA 60.179 50.0 0.0 0.0 0.0 4.17 F
1086 1108 0.036010 TGCAGGTAGAAGGCAAGAGC 60.036 55.0 0.0 0.0 41.1 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 1877 0.107993 AGACCATGGACACGCATCAG 60.108 55.0 21.47 0.0 0.0 2.90 R
2528 2584 0.110238 CCTGCGAACATCAACAACGG 60.110 55.0 0.00 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 9.994432 CTATTGTAGCTAAGTTTCCTTCATTTG 57.006 33.333 0.00 0.00 31.89 2.32
228 231 4.212004 GCATAGATTTGCTCGCTTACATCA 59.788 41.667 0.00 0.00 39.57 3.07
256 259 0.752009 TCGGGTCTCGATTCTCCCTG 60.752 60.000 0.00 2.08 43.74 4.45
278 281 9.710900 CCCTGTTTTTCTTAATTTCTTTGCTAT 57.289 29.630 0.00 0.00 0.00 2.97
291 294 6.826893 TTCTTTGCTATGTCAACTTTTTGC 57.173 33.333 0.00 0.00 32.17 3.68
293 296 4.935352 TTGCTATGTCAACTTTTTGCCT 57.065 36.364 0.00 0.00 32.17 4.75
294 297 6.264292 TCTTTGCTATGTCAACTTTTTGCCTA 59.736 34.615 0.00 0.00 32.17 3.93
295 298 5.371115 TGCTATGTCAACTTTTTGCCTAC 57.629 39.130 0.00 0.00 32.17 3.18
296 299 4.083537 TGCTATGTCAACTTTTTGCCTACG 60.084 41.667 0.00 0.00 32.17 3.51
297 300 4.083484 GCTATGTCAACTTTTTGCCTACGT 60.083 41.667 0.00 0.00 32.17 3.57
298 301 3.684103 TGTCAACTTTTTGCCTACGTG 57.316 42.857 0.00 0.00 32.17 4.49
371 375 5.592688 ACAAGAACTAGCTAACTGCCAAAAA 59.407 36.000 0.00 0.00 44.23 1.94
410 414 1.136565 CGCTTGCATTACCAACCCG 59.863 57.895 0.00 0.00 0.00 5.28
469 473 5.739161 GGATTGATACAAACATGTTCGCTTC 59.261 40.000 12.39 7.90 0.00 3.86
481 485 2.277084 GTTCGCTTCCACGTATTCCAT 58.723 47.619 0.00 0.00 0.00 3.41
516 520 7.336679 TCTTTATCATCCACACACGATTTCAAT 59.663 33.333 0.00 0.00 0.00 2.57
570 576 2.107953 GCCTTTTTGCCGTTGCCA 59.892 55.556 0.00 0.00 36.33 4.92
640 646 2.544486 GCAAGGCAAGAAAGACAAGGTG 60.544 50.000 0.00 0.00 0.00 4.00
712 719 4.952262 GCAACTAGCAATTGATCTGTCA 57.048 40.909 10.34 0.00 44.79 3.58
713 720 5.496133 GCAACTAGCAATTGATCTGTCAT 57.504 39.130 10.34 0.00 44.79 3.06
757 764 3.812167 GCCAGTGGAGTTTGGAAGAAGAT 60.812 47.826 15.20 0.00 36.55 2.40
788 795 4.442706 CAAACACACTCACAGTTAGGAGT 58.557 43.478 0.00 0.00 44.84 3.85
804 811 3.977427 AGGAGTTTTTGTTTTCATCCGC 58.023 40.909 0.00 0.00 31.44 5.54
820 827 1.594194 CCGCTTTACATGGCTGGCAA 61.594 55.000 8.35 0.00 0.00 4.52
829 838 1.134907 CATGGCTGGCAAGATTTCACC 60.135 52.381 8.35 0.00 0.00 4.02
830 839 0.178967 TGGCTGGCAAGATTTCACCA 60.179 50.000 0.00 0.00 0.00 4.17
831 840 0.968405 GGCTGGCAAGATTTCACCAA 59.032 50.000 0.00 0.00 0.00 3.67
832 841 1.344114 GGCTGGCAAGATTTCACCAAA 59.656 47.619 0.00 0.00 0.00 3.28
833 842 2.224257 GGCTGGCAAGATTTCACCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
834 843 3.465871 GCTGGCAAGATTTCACCAAAAA 58.534 40.909 0.00 0.00 0.00 1.94
887 896 4.319639 CGCAACATTTACATACAACAACCG 59.680 41.667 0.00 0.00 0.00 4.44
915 924 0.178967 ACATCCCACATGCCACAACA 60.179 50.000 0.00 0.00 0.00 3.33
933 942 7.509546 CCACAACAACCATCTCCTATAACTAT 58.490 38.462 0.00 0.00 0.00 2.12
973 982 4.159135 GTCTCAGCAATCCATCAACCAAAT 59.841 41.667 0.00 0.00 0.00 2.32
978 987 4.100498 AGCAATCCATCAACCAAATCCATC 59.900 41.667 0.00 0.00 0.00 3.51
980 989 5.627272 GCAATCCATCAACCAAATCCATCAA 60.627 40.000 0.00 0.00 0.00 2.57
981 990 5.603170 ATCCATCAACCAAATCCATCAAC 57.397 39.130 0.00 0.00 0.00 3.18
1029 1051 1.668826 AGGGCTTCAAGGGTGTGATA 58.331 50.000 0.00 0.00 0.00 2.15
1086 1108 0.036010 TGCAGGTAGAAGGCAAGAGC 60.036 55.000 0.00 0.00 41.10 4.09
1159 1181 1.061711 GTGCTCAGAAGTTATGCGCAG 59.938 52.381 18.32 0.00 38.91 5.18
1160 1182 0.654683 GCTCAGAAGTTATGCGCAGG 59.345 55.000 18.32 0.00 0.00 4.85
1177 1199 2.868839 GCAGGCGTCTGTAGGTGTAAAA 60.869 50.000 19.84 0.00 42.78 1.52
1180 1202 3.514309 AGGCGTCTGTAGGTGTAAAATCT 59.486 43.478 0.00 0.00 0.00 2.40
1405 1432 5.334646 CGTTAGATGATCAGATTTGCCATGG 60.335 44.000 7.63 7.63 0.00 3.66
1409 1436 6.732487 AGATGATCAGATTTGCCATGGATAT 58.268 36.000 18.40 4.50 0.00 1.63
1433 1461 6.698359 TTTTCCACAAGTTTTTCTTTCACG 57.302 33.333 0.00 0.00 33.63 4.35
1454 1482 9.491675 TTCACGATTTTCTACCAACAAGTAATA 57.508 29.630 0.00 0.00 0.00 0.98
1488 1517 6.574350 ACTAACAAGGAACGAATGATAGAGG 58.426 40.000 0.00 0.00 0.00 3.69
1520 1556 9.625747 TGAATATCCAAAGCATATTGTAAGTGA 57.374 29.630 0.00 0.00 0.00 3.41
1560 1596 6.202188 CGGACAGGATTTTATTTACACGCTAT 59.798 38.462 0.00 0.00 0.00 2.97
1783 1819 6.446318 TGAAACTCTATGTGGAAAATTGTGC 58.554 36.000 0.00 0.00 0.00 4.57
1798 1834 1.232119 TGTGCTGATGCTTGTGTCAG 58.768 50.000 0.00 0.00 43.62 3.51
1824 1860 2.252072 TAACGGTGATGCTGGCCTCC 62.252 60.000 3.32 0.00 0.00 4.30
1841 1877 0.468226 TCCCATCCCTTGATGCGTAC 59.532 55.000 0.00 0.00 45.86 3.67
1850 1886 0.998669 TTGATGCGTACTGATGCGTG 59.001 50.000 0.00 0.00 40.80 5.34
1965 2001 5.471797 TCACCCTGTTTTATGTGTGTGTATG 59.528 40.000 0.00 0.00 0.00 2.39
2024 2068 1.141019 CATGTTGCTGCCCTGATGC 59.859 57.895 0.00 0.00 0.00 3.91
2050 2094 7.816513 CACTACCATGACTGAGATATAATGGTG 59.183 40.741 13.92 7.60 45.56 4.17
2074 2118 2.824936 TGTTGTATCATTTGCCTGTGGG 59.175 45.455 0.00 0.00 0.00 4.61
2084 2128 4.650972 TTTGCCTGTGGGTATAAACTCT 57.349 40.909 0.00 0.00 34.45 3.24
2094 2138 4.264668 TGGGTATAAACTCTGTCTGGGAGA 60.265 45.833 0.00 0.00 35.10 3.71
2154 2198 4.804420 AGGGCTCAGATCGGGGCA 62.804 66.667 19.69 0.00 0.00 5.36
2223 2267 1.066257 CGGCACAGCTGCACTTTTT 59.934 52.632 15.27 0.00 46.28 1.94
2231 2275 2.485814 CAGCTGCACTTTTTCCTCTACC 59.514 50.000 0.00 0.00 0.00 3.18
2239 2294 2.216750 TTTTCCTCTACCGGACGGCG 62.217 60.000 9.46 4.80 39.32 6.46
2240 2295 3.925630 TTCCTCTACCGGACGGCGT 62.926 63.158 14.65 14.65 39.32 5.68
2241 2296 2.514592 CCTCTACCGGACGGCGTA 60.515 66.667 14.74 0.00 39.32 4.42
2242 2297 2.541120 CCTCTACCGGACGGCGTAG 61.541 68.421 14.74 10.56 39.32 3.51
2243 2298 1.522355 CTCTACCGGACGGCGTAGA 60.522 63.158 14.74 11.18 38.86 2.59
2244 2299 1.078497 TCTACCGGACGGCGTAGAA 60.078 57.895 14.74 1.35 38.37 2.10
2245 2300 1.091771 TCTACCGGACGGCGTAGAAG 61.092 60.000 14.74 11.09 38.37 2.85
2246 2301 2.659017 CTACCGGACGGCGTAGAAGC 62.659 65.000 14.74 0.00 39.32 3.86
2258 2313 3.733344 TAGAAGCGGCGATGGGTGC 62.733 63.158 12.98 0.00 0.00 5.01
2290 2345 2.027625 GTGGCGAGTGGTAGCACAC 61.028 63.158 25.75 18.80 41.63 3.82
2299 2354 0.179032 TGGTAGCACACTGGTGTTGG 60.179 55.000 3.41 0.00 46.95 3.77
2316 2371 4.922026 GTGGTGGGCGTCGTTGGT 62.922 66.667 0.00 0.00 0.00 3.67
2332 2387 4.683334 GTGTGCTTTGGTCGCGGC 62.683 66.667 6.13 3.04 0.00 6.53
2353 2408 2.765807 ACGGGCAGCAGGCTAGAT 60.766 61.111 1.94 0.00 44.01 1.98
2395 2450 4.753877 TTCGTCGACAGCGCGGAG 62.754 66.667 16.26 8.01 37.53 4.63
2427 2482 1.668047 GCTGCATTGTGGCTTCAAGAC 60.668 52.381 0.00 0.00 34.04 3.01
2429 2484 3.076621 CTGCATTGTGGCTTCAAGACTA 58.923 45.455 0.00 0.00 34.04 2.59
2439 2494 5.005740 TGGCTTCAAGACTACTCGTAGTAA 58.994 41.667 9.54 0.89 45.63 2.24
2477 2532 2.112718 CCTATGCAGGCAGCCCTC 59.887 66.667 8.22 0.00 44.83 4.30
2528 2584 2.588027 TTCCTTTTGGTTTGGTTCGC 57.412 45.000 0.00 0.00 41.38 4.70
2569 2625 0.401395 CCTGGCCCCTACCTTGGATA 60.401 60.000 0.00 0.00 0.00 2.59
2575 2631 1.700186 CCCCTACCTTGGATAAGAGGC 59.300 57.143 0.00 0.00 36.48 4.70
2578 2634 1.344763 CTACCTTGGATAAGAGGCGGG 59.655 57.143 0.00 0.00 36.48 6.13
2641 2697 2.258013 CGTTGCCCGTGATGTTGGT 61.258 57.895 0.00 0.00 0.00 3.67
2699 2762 4.521130 ACTTCTTCACGCTAATCTGTGA 57.479 40.909 0.00 0.00 42.98 3.58
2725 2788 2.892640 CGAGGAGTGGCATCGGAA 59.107 61.111 0.41 0.00 46.18 4.30
2726 2789 1.519455 CGAGGAGTGGCATCGGAAC 60.519 63.158 0.41 0.00 46.18 3.62
2755 2818 5.553162 TGGCTAGGATTGATCTATCCCAATT 59.447 40.000 26.48 14.36 44.34 2.32
2811 2874 4.270317 AGCTTATTGATTGATGGGGGTT 57.730 40.909 0.00 0.00 0.00 4.11
2823 2886 2.438434 GGGGTTGATGCCGGTGAG 60.438 66.667 1.90 0.00 0.00 3.51
2825 2888 2.668632 GGTTGATGCCGGTGAGGA 59.331 61.111 1.90 0.00 45.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.195436 CACAAACTAAGGTATCTAAGATCGGAA 58.805 37.037 0.00 0.00 0.00 4.30
1 2 7.683704 GCACAAACTAAGGTATCTAAGATCGGA 60.684 40.741 0.00 0.00 0.00 4.55
3 4 7.203910 AGCACAAACTAAGGTATCTAAGATCG 58.796 38.462 0.00 0.00 0.00 3.69
4 5 8.950208 AAGCACAAACTAAGGTATCTAAGATC 57.050 34.615 0.00 0.00 0.00 2.75
63 64 7.275920 CACTTAGCACCTTATCTAATCACCTT 58.724 38.462 0.00 0.00 0.00 3.50
99 100 8.474025 CATGCATTGGGGAGTTTAGTTTATAAA 58.526 33.333 0.00 0.00 0.00 1.40
228 231 1.848652 TCGAGACCCGAGGAAGAAAT 58.151 50.000 0.00 0.00 43.23 2.17
249 252 7.926018 GCAAAGAAATTAAGAAAAACAGGGAGA 59.074 33.333 0.00 0.00 0.00 3.71
278 281 2.356382 CCACGTAGGCAAAAAGTTGACA 59.644 45.455 0.00 0.00 46.22 3.58
291 294 2.309528 TGCTAAGAATGCCACGTAGG 57.690 50.000 0.00 0.00 41.84 3.18
293 296 3.535280 TGATGCTAAGAATGCCACGTA 57.465 42.857 0.00 0.00 0.00 3.57
294 297 2.401583 TGATGCTAAGAATGCCACGT 57.598 45.000 0.00 0.00 0.00 4.49
295 298 2.031420 CCATGATGCTAAGAATGCCACG 60.031 50.000 0.00 0.00 0.00 4.94
296 299 3.216800 TCCATGATGCTAAGAATGCCAC 58.783 45.455 0.00 0.00 0.00 5.01
297 300 3.483421 CTCCATGATGCTAAGAATGCCA 58.517 45.455 0.00 0.00 0.00 4.92
298 301 2.228343 GCTCCATGATGCTAAGAATGCC 59.772 50.000 0.00 0.00 0.00 4.40
345 349 3.578716 TGGCAGTTAGCTAGTTCTTGTCT 59.421 43.478 0.00 0.00 44.79 3.41
371 375 3.119849 CGCATCCCTCTCGAAACAAAATT 60.120 43.478 0.00 0.00 0.00 1.82
372 376 2.420022 CGCATCCCTCTCGAAACAAAAT 59.580 45.455 0.00 0.00 0.00 1.82
381 385 3.267860 GCAAGCGCATCCCTCTCG 61.268 66.667 11.47 0.00 38.36 4.04
382 386 2.124983 TGCAAGCGCATCCCTCTC 60.125 61.111 11.47 0.00 45.36 3.20
410 414 5.932303 ACAGTTCACATGGTATGTCACTTAC 59.068 40.000 0.00 0.00 42.70 2.34
469 473 5.551233 AGATGATGGTTATGGAATACGTGG 58.449 41.667 0.00 0.00 0.00 4.94
481 485 7.498900 GTGTGTGGATGATAAAGATGATGGTTA 59.501 37.037 0.00 0.00 0.00 2.85
516 520 5.653769 GTCATCCATCCCAAGAGAAATTTGA 59.346 40.000 0.00 0.00 0.00 2.69
570 576 4.034742 ACAAAAGTGTCTTTAATCACGCGT 59.965 37.500 5.58 5.58 39.25 6.01
640 646 9.801873 TTTAAAGAGCTTATGGACAAATATTGC 57.198 29.630 0.00 0.00 0.00 3.56
671 677 6.886459 AGTTGCATATCACTCCTTAAACATGT 59.114 34.615 0.00 0.00 0.00 3.21
707 714 0.662619 ACCACACGCAACAATGACAG 59.337 50.000 0.00 0.00 0.00 3.51
712 719 4.846779 ATCTTTAACCACACGCAACAAT 57.153 36.364 0.00 0.00 0.00 2.71
713 720 4.355437 CAATCTTTAACCACACGCAACAA 58.645 39.130 0.00 0.00 0.00 2.83
757 764 1.771854 TGAGTGTGTTTGGAGGGCTAA 59.228 47.619 0.00 0.00 0.00 3.09
788 795 6.201806 CCATGTAAAGCGGATGAAAACAAAAA 59.798 34.615 0.00 0.00 0.00 1.94
804 811 4.082081 TGAAATCTTGCCAGCCATGTAAAG 60.082 41.667 0.00 0.00 0.00 1.85
887 896 1.808411 ATGTGGGATGTTCACGTGAC 58.192 50.000 19.90 13.95 37.91 3.67
915 924 6.084738 TGGCTCATAGTTATAGGAGATGGTT 58.915 40.000 1.41 0.00 41.36 3.67
933 942 0.833287 GACTAGGCTTGGATGGCTCA 59.167 55.000 0.00 0.00 42.90 4.26
973 982 2.421952 GCAGGCTATCTTGGTTGATGGA 60.422 50.000 0.00 0.00 0.00 3.41
978 987 1.386533 CTGGCAGGCTATCTTGGTTG 58.613 55.000 6.61 0.00 0.00 3.77
980 989 1.225704 GCTGGCAGGCTATCTTGGT 59.774 57.895 17.64 0.00 0.00 3.67
981 990 1.527844 GGCTGGCAGGCTATCTTGG 60.528 63.158 31.42 0.00 37.85 3.61
1015 1037 4.431416 AACACACTATCACACCCTTGAA 57.569 40.909 0.00 0.00 0.00 2.69
1029 1051 3.908103 ACCCCAGTATGAGTAAACACACT 59.092 43.478 0.00 0.00 39.69 3.55
1066 1088 2.011046 GCTCTTGCCTTCTACCTGCAG 61.011 57.143 6.78 6.78 36.21 4.41
1159 1181 3.858247 AGATTTTACACCTACAGACGCC 58.142 45.455 0.00 0.00 0.00 5.68
1160 1182 4.491676 TGAGATTTTACACCTACAGACGC 58.508 43.478 0.00 0.00 0.00 5.19
1177 1199 1.407989 GCAGCTTAGGCCACTTGAGAT 60.408 52.381 5.01 0.00 39.73 2.75
1180 1202 4.722193 GCAGCTTAGGCCACTTGA 57.278 55.556 5.01 0.00 39.73 3.02
1358 1385 5.676744 CGCCATCTAACACATTCAAAATACG 59.323 40.000 0.00 0.00 0.00 3.06
1370 1397 5.289595 TGATCATCTAACGCCATCTAACAC 58.710 41.667 0.00 0.00 0.00 3.32
1409 1436 6.924060 TCGTGAAAGAAAAACTTGTGGAAAAA 59.076 30.769 0.00 0.00 38.98 1.94
1426 1454 6.725246 ACTTGTTGGTAGAAAATCGTGAAAG 58.275 36.000 0.00 0.00 0.00 2.62
1432 1460 8.712285 TCCTATTACTTGTTGGTAGAAAATCG 57.288 34.615 0.00 0.00 0.00 3.34
1454 1482 8.454570 TTCGTTCCTTGTTAGTTATTTTTCCT 57.545 30.769 0.00 0.00 0.00 3.36
1488 1517 4.595762 ATGCTTTGGATATTCACATGGC 57.404 40.909 0.00 0.00 0.00 4.40
1517 1553 6.249035 TGTCCGAAACAAATAATTCCTCAC 57.751 37.500 0.00 0.00 34.03 3.51
1520 1556 5.566469 TCCTGTCCGAAACAAATAATTCCT 58.434 37.500 0.00 0.00 37.45 3.36
1710 1746 8.922237 TGCCCAAATAACATATTATGTGTCAAT 58.078 29.630 10.01 0.00 44.07 2.57
1783 1819 3.562973 ACAGAAACTGACACAAGCATCAG 59.437 43.478 5.76 0.00 46.49 2.90
1798 1834 2.159627 CCAGCATCACCGTTACAGAAAC 59.840 50.000 0.00 0.00 34.52 2.78
1841 1877 0.107993 AGACCATGGACACGCATCAG 60.108 55.000 21.47 0.00 0.00 2.90
1850 1886 3.937706 CTGTGAAATCTCAGACCATGGAC 59.062 47.826 21.47 13.40 39.17 4.02
1965 2001 6.308041 GCTTTTATTTCGAACAAGGAATGGAC 59.692 38.462 0.00 0.00 0.00 4.02
2024 2068 7.816513 CACCATTATATCTCAGTCATGGTAGTG 59.183 40.741 1.38 0.00 42.03 2.74
2050 2094 5.450412 CCCACAGGCAAATGATACAACATAC 60.450 44.000 0.00 0.00 0.00 2.39
2074 2118 4.099727 GGGTCTCCCAGACAGAGTTTATAC 59.900 50.000 6.03 0.00 46.79 1.47
2154 2198 3.736732 GAGCAGCAGATCAGGCGCT 62.737 63.158 19.90 19.90 41.36 5.92
2160 2204 0.610174 AAAGACGGAGCAGCAGATCA 59.390 50.000 0.00 0.00 0.00 2.92
2223 2267 2.930385 CTACGCCGTCCGGTAGAGGA 62.930 65.000 7.66 0.00 42.52 3.71
2239 2294 1.883084 CACCCATCGCCGCTTCTAC 60.883 63.158 0.00 0.00 0.00 2.59
2240 2295 2.499205 CACCCATCGCCGCTTCTA 59.501 61.111 0.00 0.00 0.00 2.10
2290 2345 2.912025 GCCCACCACCAACACCAG 60.912 66.667 0.00 0.00 0.00 4.00
2299 2354 4.922026 ACCAACGACGCCCACCAC 62.922 66.667 0.00 0.00 0.00 4.16
2316 2371 4.927782 AGCCGCGACCAAAGCACA 62.928 61.111 8.23 0.00 34.19 4.57
2347 2402 1.488527 CCGCCAACTAACGATCTAGC 58.511 55.000 0.00 0.00 0.00 3.42
2353 2408 2.126228 CTCGCCGCCAACTAACGA 60.126 61.111 0.00 0.00 0.00 3.85
2377 2432 4.111016 TCCGCGCTGTCGACGAAT 62.111 61.111 11.62 0.00 37.39 3.34
2427 2482 3.698040 ACCACCACCATTACTACGAGTAG 59.302 47.826 8.58 8.58 39.04 2.57
2429 2484 2.232941 CACCACCACCATTACTACGAGT 59.767 50.000 0.00 0.00 0.00 4.18
2439 2494 3.506743 TGGCACCACCACCACCAT 61.507 61.111 0.00 0.00 46.36 3.55
2477 2532 1.978617 GGCCTCCACAACACCATGG 60.979 63.158 11.19 11.19 37.32 3.66
2528 2584 0.110238 CCTGCGAACATCAACAACGG 60.110 55.000 0.00 0.00 0.00 4.44
2569 2625 1.062488 ATTATGCCTCCCCGCCTCTT 61.062 55.000 0.00 0.00 0.00 2.85
2575 2631 1.276421 CCAGAGTATTATGCCTCCCCG 59.724 57.143 0.00 0.00 0.00 5.73
2578 2634 1.338200 CGCCCAGAGTATTATGCCTCC 60.338 57.143 0.00 0.00 0.00 4.30
2688 2751 1.927895 CCGACCAGTCACAGATTAGC 58.072 55.000 0.00 0.00 0.00 3.09
2691 2754 1.079819 CGCCGACCAGTCACAGATT 60.080 57.895 0.00 0.00 0.00 2.40
2699 2762 3.374402 CACTCCTCGCCGACCAGT 61.374 66.667 0.00 0.00 0.00 4.00
2755 2818 4.669809 ATGACCGCCCCGCCAAAA 62.670 61.111 0.00 0.00 0.00 2.44
2775 2838 0.912486 AAGCTTTCGCATAGACCCCT 59.088 50.000 0.00 0.00 39.10 4.79
2776 2839 2.614829 TAAGCTTTCGCATAGACCCC 57.385 50.000 3.20 0.00 39.10 4.95
2804 2867 4.358841 CACCGGCATCAACCCCCA 62.359 66.667 0.00 0.00 0.00 4.96
2811 2874 3.770040 CCGTCCTCACCGGCATCA 61.770 66.667 0.00 0.00 38.85 3.07
2825 2888 4.388499 AATGCCCGAGAACGCCGT 62.388 61.111 0.00 0.00 38.29 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.