Multiple sequence alignment - TraesCS1B01G425600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G425600 chr1B 100.000 2984 0 0 1 2984 651542487 651545470 0.000000e+00 5511.0
1 TraesCS1B01G425600 chr1D 94.616 2266 94 12 1 2260 469832646 469834889 0.000000e+00 3483.0
2 TraesCS1B01G425600 chr1D 100.000 64 0 0 2496 2559 469834994 469835057 5.230000e-23 119.0
3 TraesCS1B01G425600 chr1D 100.000 28 0 0 2896 2923 469835494 469835467 5.000000e-03 52.8
4 TraesCS1B01G425600 chr1A 94.469 2278 85 20 1 2260 563160070 563162324 0.000000e+00 3470.0
5 TraesCS1B01G425600 chr1A 77.892 389 47 18 2458 2844 563162379 563162730 3.900000e-49 206.0
6 TraesCS1B01G425600 chr1A 88.636 132 5 5 2259 2383 369503949 369504077 5.150000e-33 152.0
7 TraesCS1B01G425600 chr1A 79.149 235 34 10 2760 2980 561690746 561690513 6.660000e-32 148.0
8 TraesCS1B01G425600 chr6A 83.043 230 29 7 2760 2980 121713073 121713301 1.810000e-47 200.0
9 TraesCS1B01G425600 chr6A 79.310 232 39 7 2757 2980 510238299 510238529 1.430000e-33 154.0
10 TraesCS1B01G425600 chr2D 81.818 231 28 11 2760 2980 431673587 431673361 6.570000e-42 182.0
11 TraesCS1B01G425600 chr3B 80.672 238 36 4 2757 2984 172725539 172725776 3.060000e-40 176.0
12 TraesCS1B01G425600 chr3B 84.393 173 14 5 2233 2396 156882488 156882320 1.110000e-34 158.0
13 TraesCS1B01G425600 chr3B 88.806 134 5 2 2255 2381 53574017 53573887 3.980000e-34 156.0
14 TraesCS1B01G425600 chr3B 86.765 136 7 6 2259 2386 783152230 783152098 1.120000e-29 141.0
15 TraesCS1B01G425600 chr3B 78.646 192 34 5 1791 1981 438579958 438579773 1.450000e-23 121.0
16 TraesCS1B01G425600 chr6B 89.437 142 4 3 2254 2387 445884363 445884225 5.120000e-38 169.0
17 TraesCS1B01G425600 chr5A 80.252 238 33 10 2760 2984 566038937 566038701 1.840000e-37 167.0
18 TraesCS1B01G425600 chr5A 87.591 137 5 7 2259 2387 335676121 335675989 6.660000e-32 148.0
19 TraesCS1B01G425600 chr5A 82.432 74 7 6 2236 2308 643868528 643868596 3.210000e-05 60.2
20 TraesCS1B01G425600 chr7A 80.169 237 33 10 2757 2980 17379076 17379311 6.620000e-37 165.0
21 TraesCS1B01G425600 chr4A 80.088 226 38 5 2760 2979 114793991 114793767 8.560000e-36 161.0
22 TraesCS1B01G425600 chr4B 79.747 237 34 10 2756 2980 616648302 616648536 3.080000e-35 159.0
23 TraesCS1B01G425600 chr4B 79.747 237 33 11 2757 2980 108185859 108186093 1.110000e-34 158.0
24 TraesCS1B01G425600 chr2B 90.323 124 7 3 2259 2381 23889159 23889040 1.110000e-34 158.0
25 TraesCS1B01G425600 chr3A 87.970 133 9 5 2259 2388 12859194 12859322 1.850000e-32 150.0
26 TraesCS1B01G425600 chr3A 82.993 147 21 2 1836 1981 464897432 464897575 2.410000e-26 130.0
27 TraesCS1B01G425600 chr5B 87.234 141 5 8 2259 2390 341535319 341535183 6.660000e-32 148.0
28 TraesCS1B01G425600 chr2A 88.333 120 8 4 2259 2375 752012262 752012146 4.010000e-29 139.0
29 TraesCS1B01G425600 chr2A 85.496 131 11 4 2254 2382 53434459 53434583 2.410000e-26 130.0
30 TraesCS1B01G425600 chr3D 82.313 147 22 2 1836 1981 339861136 339860993 1.120000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G425600 chr1B 651542487 651545470 2983 False 5511 5511 100.0000 1 2984 1 chr1B.!!$F1 2983
1 TraesCS1B01G425600 chr1D 469832646 469835057 2411 False 1801 3483 97.3080 1 2559 2 chr1D.!!$F1 2558
2 TraesCS1B01G425600 chr1A 563160070 563162730 2660 False 1838 3470 86.1805 1 2844 2 chr1A.!!$F2 2843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 1.139498 TTGAAGGGATGCCTGGGTGA 61.139 55.000 6.51 0.0 0.00 4.02 F
1092 1096 3.134127 GCTTGCCGTCATGGGGAC 61.134 66.667 7.78 0.0 43.36 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1302 1306 0.813610 TGTGGTCAGCAAGGTTGTCG 60.814 55.0 0.0 0.0 0.0 4.35 R
2953 3015 0.107017 CGCTTGGTGGAGGGATTCAT 60.107 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.553323 CTCTTTGCTGAATCCTTTTGTGG 58.447 43.478 0.00 0.00 0.00 4.17
35 36 2.378547 TGAATCCTTTTGTGGGGCTAGT 59.621 45.455 0.00 0.00 0.00 2.57
49 50 3.408634 GGGCTAGTAGTGCTTGTTTGAA 58.591 45.455 0.00 0.00 0.00 2.69
55 56 4.074970 AGTAGTGCTTGTTTGAAGGGATG 58.925 43.478 0.00 0.00 0.00 3.51
64 65 1.139498 TTGAAGGGATGCCTGGGTGA 61.139 55.000 6.51 0.00 0.00 4.02
127 129 4.881850 AGCTTGGGGTTTATGATTTAGACG 59.118 41.667 0.00 0.00 0.00 4.18
130 132 4.787551 TGGGGTTTATGATTTAGACGCAT 58.212 39.130 0.00 0.00 0.00 4.73
131 133 4.578516 TGGGGTTTATGATTTAGACGCATG 59.421 41.667 0.00 0.00 0.00 4.06
160 162 6.126409 ACTGGATTACAAGAGGTTTGTGAAA 58.874 36.000 2.98 0.00 34.11 2.69
169 171 6.040842 ACAAGAGGTTTGTGAAAATGTATGCT 59.959 34.615 0.00 0.00 0.00 3.79
599 602 9.612066 ATGATTCTTCTGGTCTTCTTTCTATTC 57.388 33.333 0.00 0.00 0.00 1.75
945 949 8.668510 TGTTCTAGATAAGAATTTCTGATGCC 57.331 34.615 0.66 0.00 45.84 4.40
1092 1096 3.134127 GCTTGCCGTCATGGGGAC 61.134 66.667 7.78 0.00 43.36 4.46
1302 1306 1.537202 GTTGAGACCCTGAATGTGTGC 59.463 52.381 0.00 0.00 0.00 4.57
1440 1444 3.376082 GGAGTACTCCCCTGTGACA 57.624 57.895 28.87 0.00 43.94 3.58
1449 1453 1.293498 CCCTGTGACAGACTTCCGG 59.707 63.158 15.33 1.19 32.44 5.14
1785 1795 2.032681 GATGGGGGTGGCTATCGC 59.967 66.667 0.00 0.00 0.00 4.58
1851 1861 1.299648 TGGCAGGCATGACAGGTAC 59.700 57.895 0.78 0.00 40.49 3.34
1875 1885 4.509737 GGACCGAGGCGCAGGTAC 62.510 72.222 19.04 16.55 41.51 3.34
1947 1957 2.439156 GAGCGCAGGGCCAAGATT 60.439 61.111 11.47 0.00 45.17 2.40
1993 2004 0.721718 GAAGAAGTGATGAACCGCGG 59.278 55.000 26.86 26.86 0.00 6.46
1999 2010 0.390735 GTGATGAACCGCGGGTAGTT 60.391 55.000 31.76 15.06 33.12 2.24
2000 2011 0.322322 TGATGAACCGCGGGTAGTTT 59.678 50.000 31.76 14.62 33.12 2.66
2001 2012 1.270947 TGATGAACCGCGGGTAGTTTT 60.271 47.619 31.76 13.76 33.12 2.43
2004 2015 1.344114 TGAACCGCGGGTAGTTTTACT 59.656 47.619 31.76 0.00 33.12 2.24
2011 2022 2.147958 CGGGTAGTTTTACTGCAAGCA 58.852 47.619 0.00 0.00 37.60 3.91
2030 2042 8.093307 TGCAAGCATTATTTACCTTTTCATTCA 58.907 29.630 0.00 0.00 0.00 2.57
2080 2103 3.751479 TGCTGTCAGACATTAGTGTGT 57.249 42.857 2.97 0.00 39.81 3.72
2113 2136 4.579869 AGTACTATTGCTTGGTTGAGTGG 58.420 43.478 0.00 0.00 0.00 4.00
2145 2168 4.022242 GTGCAGGATTCTATTAGAGGCGTA 60.022 45.833 0.00 0.00 0.00 4.42
2146 2169 4.022242 TGCAGGATTCTATTAGAGGCGTAC 60.022 45.833 0.00 0.00 0.00 3.67
2171 2194 7.067372 ACAAGCTGCTATTTGTGCTCAATATTA 59.933 33.333 0.90 0.00 36.26 0.98
2172 2195 7.756395 AGCTGCTATTTGTGCTCAATATTAT 57.244 32.000 0.00 0.00 33.32 1.28
2174 2197 8.080417 AGCTGCTATTTGTGCTCAATATTATTG 58.920 33.333 0.00 9.70 33.32 1.90
2175 2198 7.148853 GCTGCTATTTGTGCTCAATATTATTGC 60.149 37.037 10.92 6.28 33.32 3.56
2176 2199 7.147312 TGCTATTTGTGCTCAATATTATTGCC 58.853 34.615 10.92 5.94 33.32 4.52
2177 2200 6.306356 GCTATTTGTGCTCAATATTATTGCCG 59.694 38.462 10.92 6.41 33.32 5.69
2178 2201 4.566545 TTGTGCTCAATATTATTGCCGG 57.433 40.909 10.92 0.00 0.00 6.13
2179 2202 3.814625 TGTGCTCAATATTATTGCCGGA 58.185 40.909 5.05 4.22 0.00 5.14
2180 2203 3.563808 TGTGCTCAATATTATTGCCGGAC 59.436 43.478 5.05 14.05 0.00 4.79
2181 2204 3.058224 GTGCTCAATATTATTGCCGGACC 60.058 47.826 5.05 0.00 0.00 4.46
2182 2205 3.181445 TGCTCAATATTATTGCCGGACCT 60.181 43.478 5.05 0.00 0.00 3.85
2183 2206 3.189287 GCTCAATATTATTGCCGGACCTG 59.811 47.826 5.05 0.00 0.00 4.00
2188 2211 2.871096 TTATTGCCGGACCTGTTCTT 57.129 45.000 5.05 0.00 0.00 2.52
2199 2222 5.163447 CCGGACCTGTTCTTGTATTATCTGA 60.163 44.000 0.00 0.00 0.00 3.27
2200 2223 6.338146 CGGACCTGTTCTTGTATTATCTGAA 58.662 40.000 0.00 0.00 0.00 3.02
2264 2287 6.811954 TGGTTTTGTTTTCTCATTTACTCCC 58.188 36.000 0.00 0.00 0.00 4.30
2265 2288 6.609616 TGGTTTTGTTTTCTCATTTACTCCCT 59.390 34.615 0.00 0.00 0.00 4.20
2266 2289 7.145985 GGTTTTGTTTTCTCATTTACTCCCTC 58.854 38.462 0.00 0.00 0.00 4.30
2267 2290 6.894339 TTTGTTTTCTCATTTACTCCCTCC 57.106 37.500 0.00 0.00 0.00 4.30
2268 2291 4.575885 TGTTTTCTCATTTACTCCCTCCG 58.424 43.478 0.00 0.00 0.00 4.63
2269 2292 4.041198 TGTTTTCTCATTTACTCCCTCCGT 59.959 41.667 0.00 0.00 0.00 4.69
2270 2293 4.903045 TTTCTCATTTACTCCCTCCGTT 57.097 40.909 0.00 0.00 0.00 4.44
2271 2294 4.467198 TTCTCATTTACTCCCTCCGTTC 57.533 45.455 0.00 0.00 0.00 3.95
2272 2295 2.764572 TCTCATTTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
2273 2296 1.479323 TCATTTACTCCCTCCGTTCCG 59.521 52.381 0.00 0.00 0.00 4.30
2274 2297 1.479323 CATTTACTCCCTCCGTTCCGA 59.521 52.381 0.00 0.00 0.00 4.55
2275 2298 1.631405 TTTACTCCCTCCGTTCCGAA 58.369 50.000 0.00 0.00 0.00 4.30
2276 2299 1.856629 TTACTCCCTCCGTTCCGAAT 58.143 50.000 0.00 0.00 0.00 3.34
2277 2300 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
2278 2301 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2279 2302 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2280 2303 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2281 2304 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2282 2305 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2283 2306 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2284 2307 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2285 2308 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2286 2309 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
2287 2310 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
2288 2311 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
2289 2312 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
2290 2313 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
2291 2314 6.019801 CCGTTCCGAATTACTTGTCTTAGATG 60.020 42.308 0.00 0.00 0.00 2.90
2292 2315 6.750501 CGTTCCGAATTACTTGTCTTAGATGA 59.249 38.462 0.00 0.00 0.00 2.92
2293 2316 7.435488 CGTTCCGAATTACTTGTCTTAGATGAT 59.565 37.037 0.00 0.00 0.00 2.45
2294 2317 9.745880 GTTCCGAATTACTTGTCTTAGATGATA 57.254 33.333 0.00 0.00 0.00 2.15
2295 2318 9.745880 TTCCGAATTACTTGTCTTAGATGATAC 57.254 33.333 0.00 0.00 0.00 2.24
2296 2319 8.074370 TCCGAATTACTTGTCTTAGATGATACG 58.926 37.037 0.00 0.00 0.00 3.06
2297 2320 8.074370 CCGAATTACTTGTCTTAGATGATACGA 58.926 37.037 0.00 0.00 0.00 3.43
2298 2321 9.447040 CGAATTACTTGTCTTAGATGATACGAA 57.553 33.333 0.00 0.00 0.00 3.85
2319 2342 8.581057 ACGAATGTATCTAGCACTAAAATGAG 57.419 34.615 0.00 0.00 0.00 2.90
2320 2343 8.198109 ACGAATGTATCTAGCACTAAAATGAGT 58.802 33.333 0.00 0.00 0.00 3.41
2321 2344 8.695284 CGAATGTATCTAGCACTAAAATGAGTC 58.305 37.037 0.00 0.00 0.00 3.36
2322 2345 9.757227 GAATGTATCTAGCACTAAAATGAGTCT 57.243 33.333 0.00 0.00 0.00 3.24
2325 2348 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
2329 2352 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
2332 2355 9.142014 AGCACTAAAATGAGTCTAGATACATCT 57.858 33.333 12.66 0.00 40.86 2.90
2333 2356 9.190858 GCACTAAAATGAGTCTAGATACATCTG 57.809 37.037 12.66 7.80 37.76 2.90
2353 2376 9.593134 ACATCTGTATCTAGACAAATTCAAGAC 57.407 33.333 0.00 0.00 0.00 3.01
2354 2377 9.591792 CATCTGTATCTAGACAAATTCAAGACA 57.408 33.333 0.00 0.00 0.00 3.41
2356 2379 9.645059 TCTGTATCTAGACAAATTCAAGACAAG 57.355 33.333 0.00 0.00 0.00 3.16
2357 2380 9.429359 CTGTATCTAGACAAATTCAAGACAAGT 57.571 33.333 0.00 0.00 0.00 3.16
2366 2389 9.530129 GACAAATTCAAGACAAGTAGTAATTCG 57.470 33.333 0.00 0.00 0.00 3.34
2367 2390 8.504005 ACAAATTCAAGACAAGTAGTAATTCGG 58.496 33.333 0.00 0.00 0.00 4.30
2368 2391 8.717821 CAAATTCAAGACAAGTAGTAATTCGGA 58.282 33.333 0.00 0.00 0.00 4.55
2369 2392 8.842358 AATTCAAGACAAGTAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
2370 2393 7.647907 TTCAAGACAAGTAGTAATTCGGAAC 57.352 36.000 0.00 0.00 0.00 3.62
2397 2420 8.030106 GGAGGGAGTAGAATTTAACATCTATCG 58.970 40.741 1.00 0.00 31.29 2.92
2430 2455 6.357367 AGACCATAGTAAGCCATTTTCGATT 58.643 36.000 0.00 0.00 0.00 3.34
2432 2457 7.012421 AGACCATAGTAAGCCATTTTCGATTTC 59.988 37.037 0.00 0.00 0.00 2.17
2433 2458 6.136071 CCATAGTAAGCCATTTTCGATTTCG 58.864 40.000 0.00 0.00 41.45 3.46
2434 2459 4.616181 AGTAAGCCATTTTCGATTTCGG 57.384 40.909 0.00 0.00 40.29 4.30
2443 2468 5.106869 CCATTTTCGATTTCGGAACTACACA 60.107 40.000 0.00 0.00 36.44 3.72
2481 2528 0.690192 TCCTGGAAATCTCAACGGCA 59.310 50.000 0.00 0.00 0.00 5.69
2565 2612 1.308998 CAGGGCGAAGTTTGAACAGT 58.691 50.000 0.00 0.00 0.00 3.55
2569 2616 1.673920 GGCGAAGTTTGAACAGTGGAA 59.326 47.619 0.00 0.00 0.00 3.53
2594 2641 0.537371 AGCGGGAGGAAACAAAGTGG 60.537 55.000 0.00 0.00 0.00 4.00
2599 2646 2.106684 GGGAGGAAACAAAGTGGTCTCT 59.893 50.000 0.00 0.00 0.00 3.10
2600 2647 3.403968 GGAGGAAACAAAGTGGTCTCTC 58.596 50.000 0.00 0.00 0.00 3.20
2601 2648 3.071747 GGAGGAAACAAAGTGGTCTCTCT 59.928 47.826 0.00 0.00 0.00 3.10
2602 2649 4.283722 GGAGGAAACAAAGTGGTCTCTCTA 59.716 45.833 0.00 0.00 0.00 2.43
2603 2650 5.474825 GAGGAAACAAAGTGGTCTCTCTAG 58.525 45.833 0.00 0.00 0.00 2.43
2612 2659 2.946990 GTGGTCTCTCTAGTCTACTGCC 59.053 54.545 0.00 0.00 0.00 4.85
2613 2660 2.576648 TGGTCTCTCTAGTCTACTGCCA 59.423 50.000 0.00 0.00 0.00 4.92
2621 2668 2.016905 AGTCTACTGCCACTCCACTT 57.983 50.000 0.00 0.00 0.00 3.16
2622 2669 1.620819 AGTCTACTGCCACTCCACTTG 59.379 52.381 0.00 0.00 0.00 3.16
2629 2676 2.041153 CCACTCCACTTGGTTTGGC 58.959 57.895 5.34 0.00 33.59 4.52
2630 2677 0.468029 CCACTCCACTTGGTTTGGCT 60.468 55.000 5.34 0.00 33.59 4.75
2633 2680 0.954452 CTCCACTTGGTTTGGCTGTC 59.046 55.000 0.00 0.00 33.71 3.51
2635 2682 0.670162 CCACTTGGTTTGGCTGTCTG 59.330 55.000 0.00 0.00 0.00 3.51
2636 2683 1.392589 CACTTGGTTTGGCTGTCTGT 58.607 50.000 0.00 0.00 0.00 3.41
2637 2684 1.750778 CACTTGGTTTGGCTGTCTGTT 59.249 47.619 0.00 0.00 0.00 3.16
2638 2685 2.024414 ACTTGGTTTGGCTGTCTGTTC 58.976 47.619 0.00 0.00 0.00 3.18
2639 2686 1.002468 CTTGGTTTGGCTGTCTGTTCG 60.002 52.381 0.00 0.00 0.00 3.95
2640 2687 0.107410 TGGTTTGGCTGTCTGTTCGT 60.107 50.000 0.00 0.00 0.00 3.85
2641 2688 1.021968 GGTTTGGCTGTCTGTTCGTT 58.978 50.000 0.00 0.00 0.00 3.85
2642 2689 1.404035 GGTTTGGCTGTCTGTTCGTTT 59.596 47.619 0.00 0.00 0.00 3.60
2643 2690 2.450160 GTTTGGCTGTCTGTTCGTTTG 58.550 47.619 0.00 0.00 0.00 2.93
2644 2691 0.380378 TTGGCTGTCTGTTCGTTTGC 59.620 50.000 0.00 0.00 0.00 3.68
2645 2692 0.463654 TGGCTGTCTGTTCGTTTGCT 60.464 50.000 0.00 0.00 0.00 3.91
2646 2693 1.202592 TGGCTGTCTGTTCGTTTGCTA 60.203 47.619 0.00 0.00 0.00 3.49
2648 2695 3.259064 GGCTGTCTGTTCGTTTGCTATA 58.741 45.455 0.00 0.00 0.00 1.31
2652 2699 5.575606 GCTGTCTGTTCGTTTGCTATACTTA 59.424 40.000 0.00 0.00 0.00 2.24
2653 2700 6.090358 GCTGTCTGTTCGTTTGCTATACTTAA 59.910 38.462 0.00 0.00 0.00 1.85
2654 2701 7.359765 GCTGTCTGTTCGTTTGCTATACTTAAA 60.360 37.037 0.00 0.00 0.00 1.52
2655 2702 8.014322 TGTCTGTTCGTTTGCTATACTTAAAG 57.986 34.615 0.00 0.00 0.00 1.85
2656 2703 6.954297 GTCTGTTCGTTTGCTATACTTAAAGC 59.046 38.462 0.00 0.00 39.25 3.51
2657 2704 5.849858 TGTTCGTTTGCTATACTTAAAGCG 58.150 37.500 0.00 0.00 41.77 4.68
2658 2705 5.406175 TGTTCGTTTGCTATACTTAAAGCGT 59.594 36.000 0.00 0.00 41.77 5.07
2659 2706 5.444586 TCGTTTGCTATACTTAAAGCGTG 57.555 39.130 0.00 0.00 41.77 5.34
2660 2707 4.925054 TCGTTTGCTATACTTAAAGCGTGT 59.075 37.500 0.00 0.00 41.77 4.49
2662 2709 6.585702 TCGTTTGCTATACTTAAAGCGTGTAA 59.414 34.615 0.00 0.00 41.77 2.41
2663 2710 7.116090 TCGTTTGCTATACTTAAAGCGTGTAAA 59.884 33.333 0.00 0.00 41.77 2.01
2664 2711 7.741216 CGTTTGCTATACTTAAAGCGTGTAAAA 59.259 33.333 0.00 0.00 41.77 1.52
2665 2712 8.834212 GTTTGCTATACTTAAAGCGTGTAAAAC 58.166 33.333 0.00 0.00 41.77 2.43
2667 2714 7.735500 TGCTATACTTAAAGCGTGTAAAACTG 58.264 34.615 0.00 0.00 41.77 3.16
2668 2715 7.385752 TGCTATACTTAAAGCGTGTAAAACTGT 59.614 33.333 0.00 0.00 41.77 3.55
2669 2716 8.863049 GCTATACTTAAAGCGTGTAAAACTGTA 58.137 33.333 0.00 0.00 0.00 2.74
2673 2720 8.776680 ACTTAAAGCGTGTAAAACTGTAATTG 57.223 30.769 0.00 0.00 0.00 2.32
2674 2721 7.858879 ACTTAAAGCGTGTAAAACTGTAATTGG 59.141 33.333 0.00 0.00 0.00 3.16
2675 2722 5.761165 AAGCGTGTAAAACTGTAATTGGT 57.239 34.783 0.00 0.00 0.00 3.67
2676 2723 5.761165 AGCGTGTAAAACTGTAATTGGTT 57.239 34.783 0.00 0.00 0.00 3.67
2677 2724 6.864360 AGCGTGTAAAACTGTAATTGGTTA 57.136 33.333 0.00 0.00 0.00 2.85
2678 2725 7.443259 AGCGTGTAAAACTGTAATTGGTTAT 57.557 32.000 0.00 0.00 0.00 1.89
2679 2726 7.878036 AGCGTGTAAAACTGTAATTGGTTATT 58.122 30.769 0.00 0.00 0.00 1.40
2680 2727 7.806014 AGCGTGTAAAACTGTAATTGGTTATTG 59.194 33.333 0.00 0.00 0.00 1.90
2681 2728 7.061326 GCGTGTAAAACTGTAATTGGTTATTGG 59.939 37.037 0.00 0.00 0.00 3.16
2682 2729 8.077386 CGTGTAAAACTGTAATTGGTTATTGGT 58.923 33.333 0.00 0.00 0.00 3.67
2683 2730 9.752961 GTGTAAAACTGTAATTGGTTATTGGTT 57.247 29.630 0.00 0.00 0.00 3.67
2684 2731 9.751542 TGTAAAACTGTAATTGGTTATTGGTTG 57.248 29.630 0.00 0.00 0.00 3.77
2685 2732 9.752961 GTAAAACTGTAATTGGTTATTGGTTGT 57.247 29.630 0.00 0.00 0.00 3.32
2687 2734 8.655651 AAACTGTAATTGGTTATTGGTTGTTG 57.344 30.769 0.00 0.00 0.00 3.33
2688 2735 7.354751 ACTGTAATTGGTTATTGGTTGTTGT 57.645 32.000 0.00 0.00 0.00 3.32
2689 2736 7.787028 ACTGTAATTGGTTATTGGTTGTTGTT 58.213 30.769 0.00 0.00 0.00 2.83
2690 2737 8.261522 ACTGTAATTGGTTATTGGTTGTTGTTT 58.738 29.630 0.00 0.00 0.00 2.83
2691 2738 9.751542 CTGTAATTGGTTATTGGTTGTTGTTTA 57.248 29.630 0.00 0.00 0.00 2.01
2692 2739 9.751542 TGTAATTGGTTATTGGTTGTTGTTTAG 57.248 29.630 0.00 0.00 0.00 1.85
2693 2740 9.752961 GTAATTGGTTATTGGTTGTTGTTTAGT 57.247 29.630 0.00 0.00 0.00 2.24
2694 2741 8.880878 AATTGGTTATTGGTTGTTGTTTAGTC 57.119 30.769 0.00 0.00 0.00 2.59
2695 2742 7.406031 TTGGTTATTGGTTGTTGTTTAGTCA 57.594 32.000 0.00 0.00 0.00 3.41
2696 2743 7.033530 TGGTTATTGGTTGTTGTTTAGTCAG 57.966 36.000 0.00 0.00 0.00 3.51
2697 2744 6.039941 TGGTTATTGGTTGTTGTTTAGTCAGG 59.960 38.462 0.00 0.00 0.00 3.86
2698 2745 6.040054 GGTTATTGGTTGTTGTTTAGTCAGGT 59.960 38.462 0.00 0.00 0.00 4.00
2699 2746 7.229106 GGTTATTGGTTGTTGTTTAGTCAGGTA 59.771 37.037 0.00 0.00 0.00 3.08
2700 2747 6.628919 ATTGGTTGTTGTTTAGTCAGGTAC 57.371 37.500 0.00 0.00 0.00 3.34
2701 2748 4.453751 TGGTTGTTGTTTAGTCAGGTACC 58.546 43.478 2.73 2.73 0.00 3.34
2702 2749 3.817084 GGTTGTTGTTTAGTCAGGTACCC 59.183 47.826 8.74 0.00 0.00 3.69
2703 2750 4.445305 GGTTGTTGTTTAGTCAGGTACCCT 60.445 45.833 8.74 0.79 0.00 4.34
2716 2763 6.848631 AGTCAGGTACCCTCAGTAGTAGTATA 59.151 42.308 8.74 0.00 0.00 1.47
2718 2765 7.823799 GTCAGGTACCCTCAGTAGTAGTATATC 59.176 44.444 8.74 0.00 0.00 1.63
2742 2802 6.592607 TCCCGTCATCTGTTTTACTGTAATTC 59.407 38.462 0.37 0.00 0.00 2.17
2745 2805 6.370442 CGTCATCTGTTTTACTGTAATTCCCA 59.630 38.462 0.37 0.00 0.00 4.37
2746 2806 7.527457 GTCATCTGTTTTACTGTAATTCCCAC 58.473 38.462 0.37 0.00 0.00 4.61
2747 2807 7.174253 GTCATCTGTTTTACTGTAATTCCCACA 59.826 37.037 0.37 0.36 0.00 4.17
2749 2809 5.472137 TCTGTTTTACTGTAATTCCCACAGC 59.528 40.000 6.74 0.00 45.96 4.40
2750 2810 5.133941 TGTTTTACTGTAATTCCCACAGCA 58.866 37.500 6.74 0.00 45.96 4.41
2758 2819 6.071952 ACTGTAATTCCCACAGCAATAAGTTG 60.072 38.462 6.74 0.00 45.96 3.16
2760 2821 5.806654 AATTCCCACAGCAATAAGTTGTT 57.193 34.783 0.00 0.00 39.90 2.83
2768 2829 7.169140 CCCACAGCAATAAGTTGTTTTTAGAAC 59.831 37.037 0.00 0.00 39.90 3.01
2784 2845 1.061485 GAACGAAGGCTCAAGTCGAC 58.939 55.000 7.70 7.70 38.16 4.20
2794 2855 0.034896 TCAAGTCGACCCCTGCTTTC 59.965 55.000 13.01 0.00 0.00 2.62
2798 2859 1.906574 AGTCGACCCCTGCTTTCAATA 59.093 47.619 13.01 0.00 0.00 1.90
2840 2902 4.218200 CAGGATTACAGCATCAACCACAAA 59.782 41.667 0.00 0.00 0.00 2.83
2844 2906 3.883830 ACAGCATCAACCACAAAAACA 57.116 38.095 0.00 0.00 0.00 2.83
2845 2907 4.199432 ACAGCATCAACCACAAAAACAA 57.801 36.364 0.00 0.00 0.00 2.83
2846 2908 4.573900 ACAGCATCAACCACAAAAACAAA 58.426 34.783 0.00 0.00 0.00 2.83
2847 2909 4.999950 ACAGCATCAACCACAAAAACAAAA 59.000 33.333 0.00 0.00 0.00 2.44
2848 2910 5.471456 ACAGCATCAACCACAAAAACAAAAA 59.529 32.000 0.00 0.00 0.00 1.94
2849 2911 6.022821 CAGCATCAACCACAAAAACAAAAAG 58.977 36.000 0.00 0.00 0.00 2.27
2850 2912 5.936956 AGCATCAACCACAAAAACAAAAAGA 59.063 32.000 0.00 0.00 0.00 2.52
2851 2913 6.020984 GCATCAACCACAAAAACAAAAAGAC 58.979 36.000 0.00 0.00 0.00 3.01
2852 2914 6.348050 GCATCAACCACAAAAACAAAAAGACA 60.348 34.615 0.00 0.00 0.00 3.41
2853 2915 7.579726 CATCAACCACAAAAACAAAAAGACAA 58.420 30.769 0.00 0.00 0.00 3.18
2854 2916 7.553881 TCAACCACAAAAACAAAAAGACAAA 57.446 28.000 0.00 0.00 0.00 2.83
2855 2917 7.410485 TCAACCACAAAAACAAAAAGACAAAC 58.590 30.769 0.00 0.00 0.00 2.93
2856 2918 6.307031 ACCACAAAAACAAAAAGACAAACC 57.693 33.333 0.00 0.00 0.00 3.27
2857 2919 6.058833 ACCACAAAAACAAAAAGACAAACCT 58.941 32.000 0.00 0.00 0.00 3.50
2858 2920 6.017523 ACCACAAAAACAAAAAGACAAACCTG 60.018 34.615 0.00 0.00 0.00 4.00
2859 2921 5.850653 CACAAAAACAAAAAGACAAACCTGC 59.149 36.000 0.00 0.00 0.00 4.85
2860 2922 5.762711 ACAAAAACAAAAAGACAAACCTGCT 59.237 32.000 0.00 0.00 0.00 4.24
2861 2923 6.931840 ACAAAAACAAAAAGACAAACCTGCTA 59.068 30.769 0.00 0.00 0.00 3.49
2862 2924 7.442666 ACAAAAACAAAAAGACAAACCTGCTAA 59.557 29.630 0.00 0.00 0.00 3.09
2863 2925 7.595311 AAAACAAAAAGACAAACCTGCTAAG 57.405 32.000 0.00 0.00 0.00 2.18
2864 2926 6.524101 AACAAAAAGACAAACCTGCTAAGA 57.476 33.333 0.00 0.00 0.00 2.10
2865 2927 6.136541 ACAAAAAGACAAACCTGCTAAGAG 57.863 37.500 0.00 0.00 0.00 2.85
2866 2928 5.885912 ACAAAAAGACAAACCTGCTAAGAGA 59.114 36.000 0.00 0.00 0.00 3.10
2867 2929 6.547510 ACAAAAAGACAAACCTGCTAAGAGAT 59.452 34.615 0.00 0.00 0.00 2.75
2868 2930 7.719633 ACAAAAAGACAAACCTGCTAAGAGATA 59.280 33.333 0.00 0.00 0.00 1.98
2869 2931 7.674471 AAAAGACAAACCTGCTAAGAGATAC 57.326 36.000 0.00 0.00 0.00 2.24
2870 2932 6.360370 AAGACAAACCTGCTAAGAGATACA 57.640 37.500 0.00 0.00 0.00 2.29
2871 2933 6.552445 AGACAAACCTGCTAAGAGATACAT 57.448 37.500 0.00 0.00 0.00 2.29
2872 2934 7.661536 AGACAAACCTGCTAAGAGATACATA 57.338 36.000 0.00 0.00 0.00 2.29
2873 2935 7.721402 AGACAAACCTGCTAAGAGATACATAG 58.279 38.462 0.00 0.00 0.00 2.23
2874 2936 7.343316 AGACAAACCTGCTAAGAGATACATAGT 59.657 37.037 0.00 0.00 0.00 2.12
2875 2937 7.268586 ACAAACCTGCTAAGAGATACATAGTG 58.731 38.462 0.00 0.00 0.00 2.74
2876 2938 5.461032 ACCTGCTAAGAGATACATAGTGC 57.539 43.478 0.00 0.00 0.00 4.40
2877 2939 5.144100 ACCTGCTAAGAGATACATAGTGCT 58.856 41.667 0.00 0.00 0.00 4.40
2878 2940 5.242838 ACCTGCTAAGAGATACATAGTGCTC 59.757 44.000 0.00 0.00 0.00 4.26
2879 2941 5.476599 CCTGCTAAGAGATACATAGTGCTCT 59.523 44.000 0.00 0.00 39.27 4.09
2880 2942 6.324561 TGCTAAGAGATACATAGTGCTCTG 57.675 41.667 0.00 0.00 37.75 3.35
2881 2943 5.160641 GCTAAGAGATACATAGTGCTCTGC 58.839 45.833 0.00 0.00 37.75 4.26
2882 2944 5.278709 GCTAAGAGATACATAGTGCTCTGCA 60.279 44.000 0.00 0.00 37.75 4.41
2883 2945 4.852134 AGAGATACATAGTGCTCTGCAG 57.148 45.455 7.63 7.63 40.08 4.41
2904 2966 3.737850 GCTAGCAAGCTTCATATGGTCT 58.262 45.455 10.63 0.00 45.85 3.85
2905 2967 4.887748 GCTAGCAAGCTTCATATGGTCTA 58.112 43.478 10.63 0.00 45.85 2.59
2906 2968 4.688413 GCTAGCAAGCTTCATATGGTCTAC 59.312 45.833 10.63 0.00 45.85 2.59
2907 2969 4.760530 AGCAAGCTTCATATGGTCTACA 57.239 40.909 2.13 0.00 0.00 2.74
2908 2970 5.102953 AGCAAGCTTCATATGGTCTACAA 57.897 39.130 2.13 0.00 0.00 2.41
2909 2971 5.121811 AGCAAGCTTCATATGGTCTACAAG 58.878 41.667 2.13 0.00 0.00 3.16
2910 2972 4.260948 GCAAGCTTCATATGGTCTACAAGC 60.261 45.833 13.83 13.83 37.17 4.01
2911 2973 4.760530 AGCTTCATATGGTCTACAAGCA 57.239 40.909 20.39 0.00 38.98 3.91
2912 2974 5.102953 AGCTTCATATGGTCTACAAGCAA 57.897 39.130 20.39 0.00 38.98 3.91
2913 2975 5.500234 AGCTTCATATGGTCTACAAGCAAA 58.500 37.500 20.39 0.00 38.98 3.68
2914 2976 5.587844 AGCTTCATATGGTCTACAAGCAAAG 59.412 40.000 20.39 7.39 38.98 2.77
2915 2977 5.586243 GCTTCATATGGTCTACAAGCAAAGA 59.414 40.000 15.83 0.00 39.21 2.52
2916 2978 6.261826 GCTTCATATGGTCTACAAGCAAAGAT 59.738 38.462 15.83 0.00 39.21 2.40
2917 2979 7.558161 TTCATATGGTCTACAAGCAAAGATG 57.442 36.000 2.13 0.00 39.21 2.90
2918 2980 6.888105 TCATATGGTCTACAAGCAAAGATGA 58.112 36.000 2.13 0.00 39.21 2.92
2919 2981 7.337938 TCATATGGTCTACAAGCAAAGATGAA 58.662 34.615 2.13 0.00 39.21 2.57
2920 2982 7.496920 TCATATGGTCTACAAGCAAAGATGAAG 59.503 37.037 2.13 0.00 39.21 3.02
2921 2983 5.227569 TGGTCTACAAGCAAAGATGAAGA 57.772 39.130 0.00 0.00 30.91 2.87
2922 2984 5.620206 TGGTCTACAAGCAAAGATGAAGAA 58.380 37.500 0.00 0.00 30.91 2.52
2923 2985 6.061441 TGGTCTACAAGCAAAGATGAAGAAA 58.939 36.000 0.00 0.00 30.91 2.52
2924 2986 6.545666 TGGTCTACAAGCAAAGATGAAGAAAA 59.454 34.615 0.00 0.00 30.91 2.29
2925 2987 7.068103 TGGTCTACAAGCAAAGATGAAGAAAAA 59.932 33.333 0.00 0.00 30.91 1.94
2926 2988 7.379797 GGTCTACAAGCAAAGATGAAGAAAAAC 59.620 37.037 0.00 0.00 0.00 2.43
2927 2989 8.131731 GTCTACAAGCAAAGATGAAGAAAAACT 58.868 33.333 0.00 0.00 0.00 2.66
2928 2990 9.337396 TCTACAAGCAAAGATGAAGAAAAACTA 57.663 29.630 0.00 0.00 0.00 2.24
2929 2991 9.950680 CTACAAGCAAAGATGAAGAAAAACTAA 57.049 29.630 0.00 0.00 0.00 2.24
2931 2993 9.822185 ACAAGCAAAGATGAAGAAAAACTAAAT 57.178 25.926 0.00 0.00 0.00 1.40
2934 2996 9.468532 AGCAAAGATGAAGAAAAACTAAATCAC 57.531 29.630 0.00 0.00 0.00 3.06
2935 2997 9.248291 GCAAAGATGAAGAAAAACTAAATCACA 57.752 29.630 0.00 0.00 0.00 3.58
2937 2999 9.971922 AAAGATGAAGAAAAACTAAATCACAGG 57.028 29.630 0.00 0.00 0.00 4.00
2938 3000 8.924511 AGATGAAGAAAAACTAAATCACAGGA 57.075 30.769 0.00 0.00 0.00 3.86
2939 3001 9.354673 AGATGAAGAAAAACTAAATCACAGGAA 57.645 29.630 0.00 0.00 0.00 3.36
2940 3002 9.399403 GATGAAGAAAAACTAAATCACAGGAAC 57.601 33.333 0.00 0.00 0.00 3.62
2941 3003 8.287439 TGAAGAAAAACTAAATCACAGGAACA 57.713 30.769 0.00 0.00 0.00 3.18
2942 3004 8.744652 TGAAGAAAAACTAAATCACAGGAACAA 58.255 29.630 0.00 0.00 0.00 2.83
2943 3005 8.926715 AAGAAAAACTAAATCACAGGAACAAC 57.073 30.769 0.00 0.00 0.00 3.32
2944 3006 8.293699 AGAAAAACTAAATCACAGGAACAACT 57.706 30.769 0.00 0.00 0.00 3.16
2945 3007 8.749354 AGAAAAACTAAATCACAGGAACAACTT 58.251 29.630 0.00 0.00 0.00 2.66
2946 3008 8.702163 AAAAACTAAATCACAGGAACAACTTG 57.298 30.769 0.00 0.00 0.00 3.16
2947 3009 7.639113 AAACTAAATCACAGGAACAACTTGA 57.361 32.000 0.00 0.00 0.00 3.02
2948 3010 7.639113 AACTAAATCACAGGAACAACTTGAA 57.361 32.000 0.00 0.00 0.00 2.69
2949 3011 7.264373 ACTAAATCACAGGAACAACTTGAAG 57.736 36.000 0.00 0.00 0.00 3.02
2950 3012 5.520376 AAATCACAGGAACAACTTGAAGG 57.480 39.130 0.00 0.00 0.00 3.46
2951 3013 2.297701 TCACAGGAACAACTTGAAGGC 58.702 47.619 0.00 0.00 0.00 4.35
2952 3014 1.002468 CACAGGAACAACTTGAAGGCG 60.002 52.381 0.00 0.00 0.00 5.52
2953 3015 1.134220 ACAGGAACAACTTGAAGGCGA 60.134 47.619 0.00 0.00 0.00 5.54
2954 3016 2.154462 CAGGAACAACTTGAAGGCGAT 58.846 47.619 0.00 0.00 0.00 4.58
2955 3017 2.095567 CAGGAACAACTTGAAGGCGATG 60.096 50.000 0.00 0.00 0.00 3.84
2956 3018 2.151202 GGAACAACTTGAAGGCGATGA 58.849 47.619 0.00 0.00 0.00 2.92
2957 3019 2.552315 GGAACAACTTGAAGGCGATGAA 59.448 45.455 0.00 0.00 0.00 2.57
2958 3020 3.191371 GGAACAACTTGAAGGCGATGAAT 59.809 43.478 0.00 0.00 0.00 2.57
2959 3021 4.406943 GAACAACTTGAAGGCGATGAATC 58.593 43.478 0.00 0.00 0.00 2.52
2960 3022 2.749621 ACAACTTGAAGGCGATGAATCC 59.250 45.455 0.00 0.00 0.00 3.01
2961 3023 2.044123 ACTTGAAGGCGATGAATCCC 57.956 50.000 0.00 0.00 0.00 3.85
2962 3024 1.561542 ACTTGAAGGCGATGAATCCCT 59.438 47.619 0.00 0.00 0.00 4.20
2963 3025 2.216898 CTTGAAGGCGATGAATCCCTC 58.783 52.381 0.00 0.00 30.41 4.30
2964 3026 0.469917 TGAAGGCGATGAATCCCTCC 59.530 55.000 0.00 0.00 30.41 4.30
2965 3027 0.469917 GAAGGCGATGAATCCCTCCA 59.530 55.000 0.00 0.00 30.41 3.86
2966 3028 0.181350 AAGGCGATGAATCCCTCCAC 59.819 55.000 0.00 0.00 30.41 4.02
2967 3029 1.227973 GGCGATGAATCCCTCCACC 60.228 63.158 0.00 0.00 0.00 4.61
2968 3030 1.526887 GCGATGAATCCCTCCACCA 59.473 57.895 0.00 0.00 0.00 4.17
2969 3031 0.107214 GCGATGAATCCCTCCACCAA 60.107 55.000 0.00 0.00 0.00 3.67
2970 3032 1.959042 CGATGAATCCCTCCACCAAG 58.041 55.000 0.00 0.00 0.00 3.61
2971 3033 1.685148 GATGAATCCCTCCACCAAGC 58.315 55.000 0.00 0.00 0.00 4.01
2972 3034 0.107017 ATGAATCCCTCCACCAAGCG 60.107 55.000 0.00 0.00 0.00 4.68
2973 3035 2.044946 AATCCCTCCACCAAGCGC 60.045 61.111 0.00 0.00 0.00 5.92
2974 3036 2.819984 GAATCCCTCCACCAAGCGCA 62.820 60.000 11.47 0.00 0.00 6.09
2975 3037 3.628646 ATCCCTCCACCAAGCGCAC 62.629 63.158 11.47 0.00 0.00 5.34
2976 3038 4.335647 CCCTCCACCAAGCGCACT 62.336 66.667 11.47 0.00 0.00 4.40
2977 3039 2.743928 CCTCCACCAAGCGCACTC 60.744 66.667 11.47 0.00 0.00 3.51
2978 3040 2.743928 CTCCACCAAGCGCACTCC 60.744 66.667 11.47 0.00 0.00 3.85
2979 3041 3.535629 CTCCACCAAGCGCACTCCA 62.536 63.158 11.47 0.00 0.00 3.86
2980 3042 3.357079 CCACCAAGCGCACTCCAC 61.357 66.667 11.47 0.00 0.00 4.02
2981 3043 3.357079 CACCAAGCGCACTCCACC 61.357 66.667 11.47 0.00 0.00 4.61
2982 3044 3.872603 ACCAAGCGCACTCCACCA 61.873 61.111 11.47 0.00 0.00 4.17
2983 3045 3.357079 CCAAGCGCACTCCACCAC 61.357 66.667 11.47 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.053831 TCAAACAAGCACTACTAGCCC 57.946 47.619 0.00 0.00 0.00 5.19
35 36 2.819608 GCATCCCTTCAAACAAGCACTA 59.180 45.455 0.00 0.00 0.00 2.74
49 50 0.625683 AGAATCACCCAGGCATCCCT 60.626 55.000 0.00 0.00 44.25 4.20
55 56 1.559682 TGACCTAAGAATCACCCAGGC 59.440 52.381 0.00 0.00 0.00 4.85
64 65 6.098409 CACTGGTATACACCTGACCTAAGAAT 59.902 42.308 3.81 0.00 45.98 2.40
127 129 6.151144 ACCTCTTGTAATCCAGTAAAACATGC 59.849 38.462 0.00 0.00 0.00 4.06
130 132 7.558444 ACAAACCTCTTGTAATCCAGTAAAACA 59.442 33.333 0.00 0.00 0.00 2.83
131 133 7.860872 CACAAACCTCTTGTAATCCAGTAAAAC 59.139 37.037 0.00 0.00 0.00 2.43
382 384 6.042143 ACCAAACAACATAGCACAAAAGAAG 58.958 36.000 0.00 0.00 0.00 2.85
945 949 5.108254 GCTGCACAAAACAAAGATAAGAACG 60.108 40.000 0.00 0.00 0.00 3.95
1092 1096 4.680237 TGCAGACGGGAGCAACGG 62.680 66.667 0.00 0.00 37.90 4.44
1302 1306 0.813610 TGTGGTCAGCAAGGTTGTCG 60.814 55.000 0.00 0.00 0.00 4.35
1440 1444 3.069318 GTCGCCTCCCGGAAGTCT 61.069 66.667 0.73 0.00 37.59 3.24
1602 1606 1.968540 GTTGTCCCTCCTGTGCTGC 60.969 63.158 0.00 0.00 0.00 5.25
1693 1703 1.520787 CATCGCCTCCACGGTAACC 60.521 63.158 0.00 0.00 34.25 2.85
1694 1704 1.520787 CCATCGCCTCCACGGTAAC 60.521 63.158 0.00 0.00 34.25 2.50
1818 1828 3.330720 CCACCACCTCCACCCCTC 61.331 72.222 0.00 0.00 0.00 4.30
1851 1861 2.355126 CGCCTCGGTCCATCATCG 60.355 66.667 0.00 0.00 0.00 3.84
1947 1957 1.367471 CTCACGGTTCCACTGCTCA 59.633 57.895 0.00 0.00 0.00 4.26
1993 2004 9.285770 GTAAATAATGCTTGCAGTAAAACTACC 57.714 33.333 6.85 0.00 0.00 3.18
1999 2010 9.418045 GAAAAGGTAAATAATGCTTGCAGTAAA 57.582 29.630 6.85 0.00 0.00 2.01
2000 2011 8.580720 TGAAAAGGTAAATAATGCTTGCAGTAA 58.419 29.630 6.85 0.00 0.00 2.24
2001 2012 8.116651 TGAAAAGGTAAATAATGCTTGCAGTA 57.883 30.769 5.26 5.26 0.00 2.74
2004 2015 8.093307 TGAATGAAAAGGTAAATAATGCTTGCA 58.907 29.630 0.00 0.00 0.00 4.08
2011 2022 9.787532 CGACACATGAATGAAAAGGTAAATAAT 57.212 29.630 0.00 0.00 0.00 1.28
2030 2042 3.402628 AGGAGCAAACTAACGACACAT 57.597 42.857 0.00 0.00 0.00 3.21
2080 2103 6.071560 CCAAGCAATAGTACTATATCGACCCA 60.072 42.308 15.74 0.00 0.00 4.51
2081 2104 6.071503 ACCAAGCAATAGTACTATATCGACCC 60.072 42.308 15.74 0.77 0.00 4.46
2145 2168 2.507484 TGAGCACAAATAGCAGCTTGT 58.493 42.857 0.00 0.00 37.48 3.16
2146 2169 3.564235 TTGAGCACAAATAGCAGCTTG 57.436 42.857 0.00 0.00 37.48 4.01
2171 2194 0.110486 ACAAGAACAGGTCCGGCAAT 59.890 50.000 0.00 0.00 0.00 3.56
2172 2195 0.759959 TACAAGAACAGGTCCGGCAA 59.240 50.000 0.00 0.00 0.00 4.52
2174 2197 2.109425 AATACAAGAACAGGTCCGGC 57.891 50.000 0.00 0.00 0.00 6.13
2175 2198 5.050490 CAGATAATACAAGAACAGGTCCGG 58.950 45.833 0.00 0.00 0.00 5.14
2176 2199 5.902681 TCAGATAATACAAGAACAGGTCCG 58.097 41.667 0.00 0.00 0.00 4.79
2177 2200 8.561738 TTTTCAGATAATACAAGAACAGGTCC 57.438 34.615 0.00 0.00 0.00 4.46
2178 2201 9.220767 ACTTTTCAGATAATACAAGAACAGGTC 57.779 33.333 0.00 0.00 0.00 3.85
2179 2202 9.574516 AACTTTTCAGATAATACAAGAACAGGT 57.425 29.630 0.00 0.00 0.00 4.00
2188 2211 8.836268 ACACGGTAAACTTTTCAGATAATACA 57.164 30.769 0.00 0.00 0.00 2.29
2199 2222 4.976224 AAGCAGAACACGGTAAACTTTT 57.024 36.364 0.00 0.00 0.00 2.27
2200 2223 4.976224 AAAGCAGAACACGGTAAACTTT 57.024 36.364 0.00 0.00 0.00 2.66
2209 2232 2.559998 ACCAACAAAAGCAGAACACG 57.440 45.000 0.00 0.00 0.00 4.49
2268 2291 8.649973 ATCATCTAAGACAAGTAATTCGGAAC 57.350 34.615 0.00 0.00 0.00 3.62
2269 2292 9.745880 GTATCATCTAAGACAAGTAATTCGGAA 57.254 33.333 0.00 0.00 0.00 4.30
2270 2293 8.074370 CGTATCATCTAAGACAAGTAATTCGGA 58.926 37.037 0.00 0.00 0.00 4.55
2271 2294 8.074370 TCGTATCATCTAAGACAAGTAATTCGG 58.926 37.037 0.00 0.00 0.00 4.30
2272 2295 9.447040 TTCGTATCATCTAAGACAAGTAATTCG 57.553 33.333 0.00 0.00 0.00 3.34
2293 2316 9.678941 CTCATTTTAGTGCTAGATACATTCGTA 57.321 33.333 0.00 0.00 0.00 3.43
2294 2317 8.198109 ACTCATTTTAGTGCTAGATACATTCGT 58.802 33.333 0.00 0.00 0.00 3.85
2295 2318 8.581057 ACTCATTTTAGTGCTAGATACATTCG 57.419 34.615 0.00 0.00 0.00 3.34
2296 2319 9.757227 AGACTCATTTTAGTGCTAGATACATTC 57.243 33.333 0.00 0.00 0.00 2.67
2299 2322 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
2303 2326 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
2306 2329 9.142014 AGATGTATCTAGACTCATTTTAGTGCT 57.858 33.333 11.25 2.44 34.85 4.40
2307 2330 9.190858 CAGATGTATCTAGACTCATTTTAGTGC 57.809 37.037 11.25 0.69 34.85 4.40
2327 2350 9.593134 GTCTTGAATTTGTCTAGATACAGATGT 57.407 33.333 0.00 0.00 39.77 3.06
2328 2351 9.591792 TGTCTTGAATTTGTCTAGATACAGATG 57.408 33.333 0.00 0.00 39.77 2.90
2330 2353 9.645059 CTTGTCTTGAATTTGTCTAGATACAGA 57.355 33.333 0.00 0.00 39.77 3.41
2331 2354 9.429359 ACTTGTCTTGAATTTGTCTAGATACAG 57.571 33.333 0.00 0.00 39.77 2.74
2340 2363 9.530129 CGAATTACTACTTGTCTTGAATTTGTC 57.470 33.333 0.00 0.00 0.00 3.18
2341 2364 8.504005 CCGAATTACTACTTGTCTTGAATTTGT 58.496 33.333 0.00 0.00 0.00 2.83
2342 2365 8.717821 TCCGAATTACTACTTGTCTTGAATTTG 58.282 33.333 0.00 0.00 0.00 2.32
2343 2366 8.842358 TCCGAATTACTACTTGTCTTGAATTT 57.158 30.769 0.00 0.00 0.00 1.82
2344 2367 8.718734 GTTCCGAATTACTACTTGTCTTGAATT 58.281 33.333 0.00 0.00 0.00 2.17
2345 2368 7.063074 CGTTCCGAATTACTACTTGTCTTGAAT 59.937 37.037 0.00 0.00 0.00 2.57
2346 2369 6.364165 CGTTCCGAATTACTACTTGTCTTGAA 59.636 38.462 0.00 0.00 0.00 2.69
2347 2370 5.860182 CGTTCCGAATTACTACTTGTCTTGA 59.140 40.000 0.00 0.00 0.00 3.02
2348 2371 5.061808 CCGTTCCGAATTACTACTTGTCTTG 59.938 44.000 0.00 0.00 0.00 3.02
2349 2372 5.047802 TCCGTTCCGAATTACTACTTGTCTT 60.048 40.000 0.00 0.00 0.00 3.01
2350 2373 4.460382 TCCGTTCCGAATTACTACTTGTCT 59.540 41.667 0.00 0.00 0.00 3.41
2351 2374 4.737054 TCCGTTCCGAATTACTACTTGTC 58.263 43.478 0.00 0.00 0.00 3.18
2352 2375 4.381292 CCTCCGTTCCGAATTACTACTTGT 60.381 45.833 0.00 0.00 0.00 3.16
2353 2376 4.110482 CCTCCGTTCCGAATTACTACTTG 58.890 47.826 0.00 0.00 0.00 3.16
2354 2377 3.131755 CCCTCCGTTCCGAATTACTACTT 59.868 47.826 0.00 0.00 0.00 2.24
2355 2378 2.692041 CCCTCCGTTCCGAATTACTACT 59.308 50.000 0.00 0.00 0.00 2.57
2356 2379 2.689983 TCCCTCCGTTCCGAATTACTAC 59.310 50.000 0.00 0.00 0.00 2.73
2357 2380 2.954318 CTCCCTCCGTTCCGAATTACTA 59.046 50.000 0.00 0.00 0.00 1.82
2358 2381 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2359 2382 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2360 2383 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2361 2384 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
2362 2385 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
2363 2386 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
2364 2387 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
2365 2388 1.400737 ATTCTACTCCCTCCGTTCCG 58.599 55.000 0.00 0.00 0.00 4.30
2366 2389 3.908643 AAATTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
2367 2390 5.727434 TGTTAAATTCTACTCCCTCCGTTC 58.273 41.667 0.00 0.00 0.00 3.95
2368 2391 5.750352 TGTTAAATTCTACTCCCTCCGTT 57.250 39.130 0.00 0.00 0.00 4.44
2369 2392 5.661759 AGATGTTAAATTCTACTCCCTCCGT 59.338 40.000 0.00 0.00 0.00 4.69
2370 2393 6.163135 AGATGTTAAATTCTACTCCCTCCG 57.837 41.667 0.00 0.00 0.00 4.63
2371 2394 8.030106 CGATAGATGTTAAATTCTACTCCCTCC 58.970 40.741 0.00 0.00 39.76 4.30
2372 2395 8.578151 ACGATAGATGTTAAATTCTACTCCCTC 58.422 37.037 0.00 0.00 41.38 4.30
2373 2396 8.480133 ACGATAGATGTTAAATTCTACTCCCT 57.520 34.615 0.00 0.00 41.38 4.20
2374 2397 8.578151 AGACGATAGATGTTAAATTCTACTCCC 58.422 37.037 0.00 0.00 41.38 4.30
2375 2398 9.400638 CAGACGATAGATGTTAAATTCTACTCC 57.599 37.037 0.00 0.00 41.38 3.85
2376 2399 9.953697 ACAGACGATAGATGTTAAATTCTACTC 57.046 33.333 0.00 0.00 36.45 2.59
2406 2429 5.353394 TCGAAAATGGCTTACTATGGTCT 57.647 39.130 0.00 0.00 0.00 3.85
2481 2528 6.218746 GTTTCATCTTGAAATTGGCTCTTGT 58.781 36.000 6.01 0.00 46.55 3.16
2594 2641 3.875134 GAGTGGCAGTAGACTAGAGAGAC 59.125 52.174 0.00 0.00 0.00 3.36
2599 2646 2.309162 AGTGGAGTGGCAGTAGACTAGA 59.691 50.000 0.00 0.00 0.00 2.43
2600 2647 2.729194 AGTGGAGTGGCAGTAGACTAG 58.271 52.381 0.00 0.00 0.00 2.57
2601 2648 2.826128 CAAGTGGAGTGGCAGTAGACTA 59.174 50.000 0.00 0.00 0.00 2.59
2602 2649 1.620819 CAAGTGGAGTGGCAGTAGACT 59.379 52.381 0.00 0.00 0.00 3.24
2603 2650 1.338200 CCAAGTGGAGTGGCAGTAGAC 60.338 57.143 0.00 0.00 37.39 2.59
2612 2659 0.670162 CAGCCAAACCAAGTGGAGTG 59.330 55.000 3.83 1.43 38.54 3.51
2613 2660 0.258774 ACAGCCAAACCAAGTGGAGT 59.741 50.000 3.83 0.00 38.54 3.85
2621 2668 0.107410 ACGAACAGACAGCCAAACCA 60.107 50.000 0.00 0.00 0.00 3.67
2622 2669 1.021968 AACGAACAGACAGCCAAACC 58.978 50.000 0.00 0.00 0.00 3.27
2629 2676 7.576750 TTAAGTATAGCAAACGAACAGACAG 57.423 36.000 0.00 0.00 0.00 3.51
2630 2677 7.359765 GCTTTAAGTATAGCAAACGAACAGACA 60.360 37.037 0.00 0.00 37.35 3.41
2633 2680 5.952064 CGCTTTAAGTATAGCAAACGAACAG 59.048 40.000 0.00 0.00 37.23 3.16
2635 2682 5.726679 CACGCTTTAAGTATAGCAAACGAAC 59.273 40.000 0.00 0.00 37.23 3.95
2636 2683 5.406175 ACACGCTTTAAGTATAGCAAACGAA 59.594 36.000 0.00 0.00 37.23 3.85
2637 2684 4.925054 ACACGCTTTAAGTATAGCAAACGA 59.075 37.500 0.00 0.00 37.23 3.85
2638 2685 5.199424 ACACGCTTTAAGTATAGCAAACG 57.801 39.130 0.00 0.00 37.23 3.60
2639 2686 8.834212 GTTTTACACGCTTTAAGTATAGCAAAC 58.166 33.333 0.00 0.00 37.23 2.93
2640 2687 8.776470 AGTTTTACACGCTTTAAGTATAGCAAA 58.224 29.630 0.00 0.00 37.23 3.68
2641 2688 8.225107 CAGTTTTACACGCTTTAAGTATAGCAA 58.775 33.333 0.00 0.00 37.23 3.91
2642 2689 7.385752 ACAGTTTTACACGCTTTAAGTATAGCA 59.614 33.333 0.00 0.00 37.23 3.49
2643 2690 7.736447 ACAGTTTTACACGCTTTAAGTATAGC 58.264 34.615 0.00 0.00 0.00 2.97
2648 2695 7.858879 CCAATTACAGTTTTACACGCTTTAAGT 59.141 33.333 0.00 0.00 0.00 2.24
2652 2699 6.139048 ACCAATTACAGTTTTACACGCTTT 57.861 33.333 0.00 0.00 0.00 3.51
2653 2700 5.761165 ACCAATTACAGTTTTACACGCTT 57.239 34.783 0.00 0.00 0.00 4.68
2654 2701 5.761165 AACCAATTACAGTTTTACACGCT 57.239 34.783 0.00 0.00 0.00 5.07
2655 2702 7.061326 CCAATAACCAATTACAGTTTTACACGC 59.939 37.037 0.00 0.00 0.00 5.34
2656 2703 8.077386 ACCAATAACCAATTACAGTTTTACACG 58.923 33.333 0.00 0.00 0.00 4.49
2657 2704 9.752961 AACCAATAACCAATTACAGTTTTACAC 57.247 29.630 0.00 0.00 0.00 2.90
2658 2705 9.751542 CAACCAATAACCAATTACAGTTTTACA 57.248 29.630 0.00 0.00 0.00 2.41
2659 2706 9.752961 ACAACCAATAACCAATTACAGTTTTAC 57.247 29.630 0.00 0.00 0.00 2.01
2662 2709 8.261522 ACAACAACCAATAACCAATTACAGTTT 58.738 29.630 0.00 0.00 0.00 2.66
2663 2710 7.787028 ACAACAACCAATAACCAATTACAGTT 58.213 30.769 0.00 0.00 0.00 3.16
2664 2711 7.354751 ACAACAACCAATAACCAATTACAGT 57.645 32.000 0.00 0.00 0.00 3.55
2665 2712 8.655651 AAACAACAACCAATAACCAATTACAG 57.344 30.769 0.00 0.00 0.00 2.74
2667 2714 9.752961 ACTAAACAACAACCAATAACCAATTAC 57.247 29.630 0.00 0.00 0.00 1.89
2668 2715 9.968870 GACTAAACAACAACCAATAACCAATTA 57.031 29.630 0.00 0.00 0.00 1.40
2669 2716 8.478877 TGACTAAACAACAACCAATAACCAATT 58.521 29.630 0.00 0.00 0.00 2.32
2670 2717 8.012957 TGACTAAACAACAACCAATAACCAAT 57.987 30.769 0.00 0.00 0.00 3.16
2672 2719 6.039941 CCTGACTAAACAACAACCAATAACCA 59.960 38.462 0.00 0.00 0.00 3.67
2673 2720 6.040054 ACCTGACTAAACAACAACCAATAACC 59.960 38.462 0.00 0.00 0.00 2.85
2674 2721 7.034685 ACCTGACTAAACAACAACCAATAAC 57.965 36.000 0.00 0.00 0.00 1.89
2675 2722 7.229106 GGTACCTGACTAAACAACAACCAATAA 59.771 37.037 4.06 0.00 0.00 1.40
2676 2723 6.711645 GGTACCTGACTAAACAACAACCAATA 59.288 38.462 4.06 0.00 0.00 1.90
2677 2724 5.533528 GGTACCTGACTAAACAACAACCAAT 59.466 40.000 4.06 0.00 0.00 3.16
2678 2725 4.883006 GGTACCTGACTAAACAACAACCAA 59.117 41.667 4.06 0.00 0.00 3.67
2679 2726 4.453751 GGTACCTGACTAAACAACAACCA 58.546 43.478 4.06 0.00 0.00 3.67
2697 2744 6.112058 CGGGATATACTACTACTGAGGGTAC 58.888 48.000 0.00 0.00 0.00 3.34
2698 2745 5.787494 ACGGGATATACTACTACTGAGGGTA 59.213 44.000 0.00 0.00 0.00 3.69
2699 2746 4.600983 ACGGGATATACTACTACTGAGGGT 59.399 45.833 0.00 0.00 0.00 4.34
2700 2747 5.176741 ACGGGATATACTACTACTGAGGG 57.823 47.826 0.00 0.00 0.00 4.30
2701 2748 5.802465 TGACGGGATATACTACTACTGAGG 58.198 45.833 0.00 0.00 0.00 3.86
2702 2749 7.279090 CAGATGACGGGATATACTACTACTGAG 59.721 44.444 0.00 0.00 0.00 3.35
2703 2750 7.104290 CAGATGACGGGATATACTACTACTGA 58.896 42.308 0.00 0.00 0.00 3.41
2716 2763 4.553330 ACAGTAAAACAGATGACGGGAT 57.447 40.909 0.00 0.00 0.00 3.85
2718 2765 6.183360 GGAATTACAGTAAAACAGATGACGGG 60.183 42.308 0.00 0.00 0.00 5.28
2742 2802 6.744112 TCTAAAAACAACTTATTGCTGTGGG 58.256 36.000 0.00 0.00 39.66 4.61
2745 2805 7.699566 TCGTTCTAAAAACAACTTATTGCTGT 58.300 30.769 0.00 0.00 39.66 4.40
2746 2806 8.555166 TTCGTTCTAAAAACAACTTATTGCTG 57.445 30.769 0.00 0.00 39.66 4.41
2747 2807 7.860872 CCTTCGTTCTAAAAACAACTTATTGCT 59.139 33.333 0.00 0.00 39.66 3.91
2748 2808 7.358105 GCCTTCGTTCTAAAAACAACTTATTGC 60.358 37.037 0.00 0.00 39.66 3.56
2749 2809 7.860872 AGCCTTCGTTCTAAAAACAACTTATTG 59.139 33.333 0.00 0.00 41.98 1.90
2750 2810 7.937649 AGCCTTCGTTCTAAAAACAACTTATT 58.062 30.769 0.00 0.00 0.00 1.40
2758 2819 5.419760 ACTTGAGCCTTCGTTCTAAAAAC 57.580 39.130 0.00 0.00 0.00 2.43
2760 2821 3.739300 CGACTTGAGCCTTCGTTCTAAAA 59.261 43.478 0.00 0.00 0.00 1.52
2768 2829 4.170723 GGTCGACTTGAGCCTTCG 57.829 61.111 16.46 0.00 39.22 3.79
2808 2870 1.066430 GCTGTAATCCTGGTCGGTTGA 60.066 52.381 0.00 0.00 0.00 3.18
2815 2877 2.308570 TGGTTGATGCTGTAATCCTGGT 59.691 45.455 0.00 0.00 0.00 4.00
2816 2878 2.684881 GTGGTTGATGCTGTAATCCTGG 59.315 50.000 0.00 0.00 0.00 4.45
2840 2902 6.930731 TCTTAGCAGGTTTGTCTTTTTGTTT 58.069 32.000 0.00 0.00 0.00 2.83
2844 2906 7.719633 TGTATCTCTTAGCAGGTTTGTCTTTTT 59.280 33.333 0.00 0.00 0.00 1.94
2845 2907 7.224297 TGTATCTCTTAGCAGGTTTGTCTTTT 58.776 34.615 0.00 0.00 0.00 2.27
2846 2908 6.769512 TGTATCTCTTAGCAGGTTTGTCTTT 58.230 36.000 0.00 0.00 0.00 2.52
2847 2909 6.360370 TGTATCTCTTAGCAGGTTTGTCTT 57.640 37.500 0.00 0.00 0.00 3.01
2848 2910 6.552445 ATGTATCTCTTAGCAGGTTTGTCT 57.448 37.500 0.00 0.00 0.00 3.41
2849 2911 7.436673 CACTATGTATCTCTTAGCAGGTTTGTC 59.563 40.741 0.00 0.00 0.00 3.18
2850 2912 7.268586 CACTATGTATCTCTTAGCAGGTTTGT 58.731 38.462 0.00 0.00 0.00 2.83
2851 2913 6.201806 GCACTATGTATCTCTTAGCAGGTTTG 59.798 42.308 0.00 0.00 0.00 2.93
2852 2914 6.098982 AGCACTATGTATCTCTTAGCAGGTTT 59.901 38.462 0.00 0.00 0.00 3.27
2853 2915 5.600484 AGCACTATGTATCTCTTAGCAGGTT 59.400 40.000 0.00 0.00 0.00 3.50
2854 2916 5.144100 AGCACTATGTATCTCTTAGCAGGT 58.856 41.667 0.00 0.00 0.00 4.00
2855 2917 5.476599 AGAGCACTATGTATCTCTTAGCAGG 59.523 44.000 0.00 0.00 32.44 4.85
2856 2918 6.380995 CAGAGCACTATGTATCTCTTAGCAG 58.619 44.000 0.00 0.00 33.99 4.24
2857 2919 5.278709 GCAGAGCACTATGTATCTCTTAGCA 60.279 44.000 0.00 0.00 33.99 3.49
2858 2920 5.160641 GCAGAGCACTATGTATCTCTTAGC 58.839 45.833 0.00 0.00 33.99 3.09
2859 2921 6.324561 TGCAGAGCACTATGTATCTCTTAG 57.675 41.667 0.00 0.00 33.99 2.18
2860 2922 5.278709 GCTGCAGAGCACTATGTATCTCTTA 60.279 44.000 20.43 0.00 45.46 2.10
2861 2923 4.501229 GCTGCAGAGCACTATGTATCTCTT 60.501 45.833 20.43 0.00 45.46 2.85
2862 2924 3.005684 GCTGCAGAGCACTATGTATCTCT 59.994 47.826 20.43 0.00 45.46 3.10
2863 2925 3.316283 GCTGCAGAGCACTATGTATCTC 58.684 50.000 20.43 0.00 45.46 2.75
2864 2926 3.383620 GCTGCAGAGCACTATGTATCT 57.616 47.619 20.43 0.00 45.46 1.98
2884 2946 5.847304 TGTAGACCATATGAAGCTTGCTAG 58.153 41.667 2.10 0.00 0.00 3.42
2885 2947 5.869649 TGTAGACCATATGAAGCTTGCTA 57.130 39.130 2.10 0.00 0.00 3.49
2886 2948 4.760530 TGTAGACCATATGAAGCTTGCT 57.239 40.909 2.10 0.00 0.00 3.91
2887 2949 4.260948 GCTTGTAGACCATATGAAGCTTGC 60.261 45.833 2.10 0.00 34.34 4.01
2888 2950 4.877823 TGCTTGTAGACCATATGAAGCTTG 59.122 41.667 19.42 0.00 37.34 4.01
2889 2951 5.102953 TGCTTGTAGACCATATGAAGCTT 57.897 39.130 19.42 0.00 37.34 3.74
2890 2952 4.760530 TGCTTGTAGACCATATGAAGCT 57.239 40.909 19.42 10.21 37.34 3.74
2891 2953 5.586243 TCTTTGCTTGTAGACCATATGAAGC 59.414 40.000 14.49 14.49 37.04 3.86
2892 2954 7.496920 TCATCTTTGCTTGTAGACCATATGAAG 59.503 37.037 3.65 0.00 0.00 3.02
2893 2955 7.337938 TCATCTTTGCTTGTAGACCATATGAA 58.662 34.615 3.65 0.00 0.00 2.57
2894 2956 6.888105 TCATCTTTGCTTGTAGACCATATGA 58.112 36.000 3.65 0.00 0.00 2.15
2895 2957 7.496920 TCTTCATCTTTGCTTGTAGACCATATG 59.503 37.037 0.00 0.00 0.00 1.78
2896 2958 7.568349 TCTTCATCTTTGCTTGTAGACCATAT 58.432 34.615 0.00 0.00 0.00 1.78
2897 2959 6.946340 TCTTCATCTTTGCTTGTAGACCATA 58.054 36.000 0.00 0.00 0.00 2.74
2898 2960 5.809001 TCTTCATCTTTGCTTGTAGACCAT 58.191 37.500 0.00 0.00 0.00 3.55
2899 2961 5.227569 TCTTCATCTTTGCTTGTAGACCA 57.772 39.130 0.00 0.00 0.00 4.02
2900 2962 6.560253 TTTCTTCATCTTTGCTTGTAGACC 57.440 37.500 0.00 0.00 0.00 3.85
2901 2963 8.131731 AGTTTTTCTTCATCTTTGCTTGTAGAC 58.868 33.333 0.00 0.00 0.00 2.59
2902 2964 8.225603 AGTTTTTCTTCATCTTTGCTTGTAGA 57.774 30.769 0.00 0.00 0.00 2.59
2903 2965 9.950680 TTAGTTTTTCTTCATCTTTGCTTGTAG 57.049 29.630 0.00 0.00 0.00 2.74
2905 2967 9.822185 ATTTAGTTTTTCTTCATCTTTGCTTGT 57.178 25.926 0.00 0.00 0.00 3.16
2908 2970 9.468532 GTGATTTAGTTTTTCTTCATCTTTGCT 57.531 29.630 0.00 0.00 0.00 3.91
2909 2971 9.248291 TGTGATTTAGTTTTTCTTCATCTTTGC 57.752 29.630 0.00 0.00 0.00 3.68
2911 2973 9.971922 CCTGTGATTTAGTTTTTCTTCATCTTT 57.028 29.630 0.00 0.00 0.00 2.52
2912 2974 9.354673 TCCTGTGATTTAGTTTTTCTTCATCTT 57.645 29.630 0.00 0.00 0.00 2.40
2913 2975 8.924511 TCCTGTGATTTAGTTTTTCTTCATCT 57.075 30.769 0.00 0.00 0.00 2.90
2914 2976 9.399403 GTTCCTGTGATTTAGTTTTTCTTCATC 57.601 33.333 0.00 0.00 0.00 2.92
2915 2977 8.912988 TGTTCCTGTGATTTAGTTTTTCTTCAT 58.087 29.630 0.00 0.00 0.00 2.57
2916 2978 8.287439 TGTTCCTGTGATTTAGTTTTTCTTCA 57.713 30.769 0.00 0.00 0.00 3.02
2917 2979 9.020813 GTTGTTCCTGTGATTTAGTTTTTCTTC 57.979 33.333 0.00 0.00 0.00 2.87
2918 2980 8.749354 AGTTGTTCCTGTGATTTAGTTTTTCTT 58.251 29.630 0.00 0.00 0.00 2.52
2919 2981 8.293699 AGTTGTTCCTGTGATTTAGTTTTTCT 57.706 30.769 0.00 0.00 0.00 2.52
2920 2982 8.807581 CAAGTTGTTCCTGTGATTTAGTTTTTC 58.192 33.333 0.00 0.00 0.00 2.29
2921 2983 8.527810 TCAAGTTGTTCCTGTGATTTAGTTTTT 58.472 29.630 2.11 0.00 0.00 1.94
2922 2984 8.062065 TCAAGTTGTTCCTGTGATTTAGTTTT 57.938 30.769 2.11 0.00 0.00 2.43
2923 2985 7.639113 TCAAGTTGTTCCTGTGATTTAGTTT 57.361 32.000 2.11 0.00 0.00 2.66
2924 2986 7.201821 CCTTCAAGTTGTTCCTGTGATTTAGTT 60.202 37.037 2.11 0.00 0.00 2.24
2925 2987 6.263168 CCTTCAAGTTGTTCCTGTGATTTAGT 59.737 38.462 2.11 0.00 0.00 2.24
2926 2988 6.672147 CCTTCAAGTTGTTCCTGTGATTTAG 58.328 40.000 2.11 0.00 0.00 1.85
2927 2989 5.009610 GCCTTCAAGTTGTTCCTGTGATTTA 59.990 40.000 2.11 0.00 0.00 1.40
2928 2990 4.202151 GCCTTCAAGTTGTTCCTGTGATTT 60.202 41.667 2.11 0.00 0.00 2.17
2929 2991 3.319122 GCCTTCAAGTTGTTCCTGTGATT 59.681 43.478 2.11 0.00 0.00 2.57
2930 2992 2.887152 GCCTTCAAGTTGTTCCTGTGAT 59.113 45.455 2.11 0.00 0.00 3.06
2931 2993 2.297701 GCCTTCAAGTTGTTCCTGTGA 58.702 47.619 2.11 0.00 0.00 3.58
2932 2994 1.002468 CGCCTTCAAGTTGTTCCTGTG 60.002 52.381 2.11 0.00 0.00 3.66
2933 2995 1.134220 TCGCCTTCAAGTTGTTCCTGT 60.134 47.619 2.11 0.00 0.00 4.00
2934 2996 1.593196 TCGCCTTCAAGTTGTTCCTG 58.407 50.000 2.11 0.00 0.00 3.86
2935 2997 2.154462 CATCGCCTTCAAGTTGTTCCT 58.846 47.619 2.11 0.00 0.00 3.36
2936 2998 2.151202 TCATCGCCTTCAAGTTGTTCC 58.849 47.619 2.11 0.00 0.00 3.62
2937 2999 3.896648 TTCATCGCCTTCAAGTTGTTC 57.103 42.857 2.11 0.00 0.00 3.18
2938 3000 3.191371 GGATTCATCGCCTTCAAGTTGTT 59.809 43.478 2.11 0.00 0.00 2.83
2939 3001 2.749621 GGATTCATCGCCTTCAAGTTGT 59.250 45.455 2.11 0.00 0.00 3.32
2940 3002 2.098117 GGGATTCATCGCCTTCAAGTTG 59.902 50.000 0.00 0.00 34.06 3.16
2941 3003 2.025887 AGGGATTCATCGCCTTCAAGTT 60.026 45.455 0.41 0.00 40.26 2.66
2942 3004 1.561542 AGGGATTCATCGCCTTCAAGT 59.438 47.619 0.41 0.00 40.26 3.16
2943 3005 2.216898 GAGGGATTCATCGCCTTCAAG 58.783 52.381 0.41 0.00 40.26 3.02
2944 3006 1.134098 GGAGGGATTCATCGCCTTCAA 60.134 52.381 0.41 0.00 40.26 2.69
2945 3007 0.469917 GGAGGGATTCATCGCCTTCA 59.530 55.000 0.41 0.00 40.26 3.02
2946 3008 0.469917 TGGAGGGATTCATCGCCTTC 59.530 55.000 0.41 0.00 40.26 3.46
2947 3009 0.181350 GTGGAGGGATTCATCGCCTT 59.819 55.000 0.41 0.00 40.26 4.35
2948 3010 1.700042 GGTGGAGGGATTCATCGCCT 61.700 60.000 0.41 0.00 40.26 5.52
2949 3011 1.227973 GGTGGAGGGATTCATCGCC 60.228 63.158 0.41 0.00 40.26 5.54
2950 3012 0.107214 TTGGTGGAGGGATTCATCGC 60.107 55.000 0.00 0.00 39.75 4.58
2951 3013 1.959042 CTTGGTGGAGGGATTCATCG 58.041 55.000 0.00 0.00 0.00 3.84
2952 3014 1.685148 GCTTGGTGGAGGGATTCATC 58.315 55.000 0.00 0.00 0.00 2.92
2953 3015 0.107017 CGCTTGGTGGAGGGATTCAT 60.107 55.000 0.00 0.00 0.00 2.57
2954 3016 1.299648 CGCTTGGTGGAGGGATTCA 59.700 57.895 0.00 0.00 0.00 2.57
2955 3017 2.115291 GCGCTTGGTGGAGGGATTC 61.115 63.158 0.00 0.00 0.00 2.52
2956 3018 2.044946 GCGCTTGGTGGAGGGATT 60.045 61.111 0.00 0.00 0.00 3.01
2957 3019 3.329889 TGCGCTTGGTGGAGGGAT 61.330 61.111 9.73 0.00 0.00 3.85
2958 3020 4.329545 GTGCGCTTGGTGGAGGGA 62.330 66.667 9.73 0.00 0.00 4.20
2959 3021 4.335647 AGTGCGCTTGGTGGAGGG 62.336 66.667 9.73 0.00 0.00 4.30
2960 3022 2.743928 GAGTGCGCTTGGTGGAGG 60.744 66.667 9.73 0.00 0.00 4.30
2961 3023 2.743928 GGAGTGCGCTTGGTGGAG 60.744 66.667 9.73 0.00 0.00 3.86
2962 3024 3.555324 TGGAGTGCGCTTGGTGGA 61.555 61.111 9.73 0.00 0.00 4.02
2963 3025 3.357079 GTGGAGTGCGCTTGGTGG 61.357 66.667 9.73 0.00 0.00 4.61
2964 3026 3.357079 GGTGGAGTGCGCTTGGTG 61.357 66.667 9.73 0.00 0.00 4.17
2965 3027 3.872603 TGGTGGAGTGCGCTTGGT 61.873 61.111 9.73 0.00 0.00 3.67
2966 3028 3.357079 GTGGTGGAGTGCGCTTGG 61.357 66.667 9.73 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.