Multiple sequence alignment - TraesCS1B01G423000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G423000 chr1B 100.000 4253 0 0 1 4253 645706170 645710422 0.000000e+00 7854.0
1 TraesCS1B01G423000 chr1B 88.918 379 33 7 1 373 7602939 7602564 3.880000e-125 459.0
2 TraesCS1B01G423000 chr1A 93.615 3602 158 22 580 4140 560181957 560178387 0.000000e+00 5312.0
3 TraesCS1B01G423000 chr1A 84.919 431 53 10 52 479 47518255 47517834 3.930000e-115 425.0
4 TraesCS1B01G423000 chr1A 76.225 551 100 22 2097 2625 576352985 576352444 3.260000e-66 263.0
5 TraesCS1B01G423000 chr1A 76.856 229 37 13 2921 3147 262339190 262338976 9.660000e-22 115.0
6 TraesCS1B01G423000 chr1A 82.692 104 16 2 2567 2669 47519406 47519508 1.630000e-14 91.6
7 TraesCS1B01G423000 chr1D 92.966 2900 127 31 611 3477 467800656 467803511 0.000000e+00 4154.0
8 TraesCS1B01G423000 chr1D 95.575 678 19 3 3474 4140 467803591 467804268 0.000000e+00 1075.0
9 TraesCS1B01G423000 chr1D 83.333 114 17 2 2567 2679 47650323 47650435 2.090000e-18 104.0
10 TraesCS1B01G423000 chr6A 89.217 881 61 15 3016 3892 4867322 4868172 0.000000e+00 1070.0
11 TraesCS1B01G423000 chr6A 80.328 1281 227 19 1219 2485 67641917 67643186 0.000000e+00 946.0
12 TraesCS1B01G423000 chr6B 80.154 1300 234 16 1219 2499 123911132 123912426 0.000000e+00 950.0
13 TraesCS1B01G423000 chr6B 88.344 489 42 12 1 479 713362449 713362932 1.330000e-159 573.0
14 TraesCS1B01G423000 chr6B 88.424 406 39 7 79 479 712233630 712234032 2.300000e-132 483.0
15 TraesCS1B01G423000 chr6B 76.897 580 97 21 2070 2629 124085052 124085614 1.160000e-75 294.0
16 TraesCS1B01G423000 chr6D 79.334 1292 243 18 1219 2500 47638437 47637160 0.000000e+00 885.0
17 TraesCS1B01G423000 chr6D 89.463 484 39 10 1 479 429744226 429744702 6.080000e-168 601.0
18 TraesCS1B01G423000 chr6D 74.521 1409 294 49 1197 2565 5042914 5044297 1.730000e-153 553.0
19 TraesCS1B01G423000 chr6D 83.815 173 28 0 1279 1451 8489581 8489753 9.460000e-37 165.0
20 TraesCS1B01G423000 chr6D 83.146 178 30 0 1274 1451 10440570 10440747 3.400000e-36 163.0
21 TraesCS1B01G423000 chr5B 85.781 429 50 9 16 437 28142026 28141602 1.090000e-120 444.0
22 TraesCS1B01G423000 chr5B 84.444 180 28 0 1280 1459 664377432 664377253 1.220000e-40 178.0
23 TraesCS1B01G423000 chr4A 87.371 388 38 9 95 479 48893251 48893630 6.530000e-118 435.0
24 TraesCS1B01G423000 chr4A 81.124 498 66 19 4 479 7468197 7467706 1.440000e-99 374.0
25 TraesCS1B01G423000 chr4A 80.556 468 53 23 4 443 589670070 589669613 4.100000e-85 326.0
26 TraesCS1B01G423000 chr5A 84.919 431 54 9 52 479 603796707 603796285 3.930000e-115 425.0
27 TraesCS1B01G423000 chr5A 83.889 180 29 0 1280 1459 655072315 655072136 5.650000e-39 172.0
28 TraesCS1B01G423000 chr7A 84.598 435 52 12 52 481 285574282 285574706 6.580000e-113 418.0
29 TraesCS1B01G423000 chr7A 75.983 229 39 12 2921 3147 119835817 119836031 2.090000e-18 104.0
30 TraesCS1B01G423000 chrUn 79.699 266 40 11 2253 2507 87467476 87467738 3.380000e-41 180.0
31 TraesCS1B01G423000 chr2A 75.983 229 39 12 2921 3147 6378088 6378302 2.090000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G423000 chr1B 645706170 645710422 4252 False 7854.0 7854 100.0000 1 4253 1 chr1B.!!$F1 4252
1 TraesCS1B01G423000 chr1A 560178387 560181957 3570 True 5312.0 5312 93.6150 580 4140 1 chr1A.!!$R3 3560
2 TraesCS1B01G423000 chr1A 576352444 576352985 541 True 263.0 263 76.2250 2097 2625 1 chr1A.!!$R4 528
3 TraesCS1B01G423000 chr1D 467800656 467804268 3612 False 2614.5 4154 94.2705 611 4140 2 chr1D.!!$F2 3529
4 TraesCS1B01G423000 chr6A 4867322 4868172 850 False 1070.0 1070 89.2170 3016 3892 1 chr6A.!!$F1 876
5 TraesCS1B01G423000 chr6A 67641917 67643186 1269 False 946.0 946 80.3280 1219 2485 1 chr6A.!!$F2 1266
6 TraesCS1B01G423000 chr6B 123911132 123912426 1294 False 950.0 950 80.1540 1219 2499 1 chr6B.!!$F1 1280
7 TraesCS1B01G423000 chr6B 124085052 124085614 562 False 294.0 294 76.8970 2070 2629 1 chr6B.!!$F2 559
8 TraesCS1B01G423000 chr6D 47637160 47638437 1277 True 885.0 885 79.3340 1219 2500 1 chr6D.!!$R1 1281
9 TraesCS1B01G423000 chr6D 5042914 5044297 1383 False 553.0 553 74.5210 1197 2565 1 chr6D.!!$F1 1368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 418 0.034198 TGCAAGATGTCCGGTTTCGA 59.966 50.0 0.00 0.00 39.00 3.71 F
1689 1744 0.031857 CCACTATGCGCTCAGAGAGG 59.968 60.0 9.73 2.61 36.29 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2096 0.095245 GTGACATGATGGTGCGAACG 59.905 55.000 0.0 0.0 0.00 3.95 R
3307 3412 1.447314 GCAGCCAAGGAAATGCAGC 60.447 57.895 0.0 0.0 38.54 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.841915 GGAAAAGGAACACTGATTTGAAAAA 57.158 32.000 0.00 0.00 0.00 1.94
52 53 6.844696 ACATGAACTTTACATAGTATGCGG 57.155 37.500 10.16 1.18 0.00 5.69
53 54 6.578944 ACATGAACTTTACATAGTATGCGGA 58.421 36.000 10.16 0.00 0.00 5.54
54 55 7.217200 ACATGAACTTTACATAGTATGCGGAT 58.783 34.615 10.16 0.00 0.00 4.18
55 56 7.715249 ACATGAACTTTACATAGTATGCGGATT 59.285 33.333 10.16 0.00 0.00 3.01
56 57 8.559536 CATGAACTTTACATAGTATGCGGATTT 58.440 33.333 10.16 0.00 0.00 2.17
57 58 7.915508 TGAACTTTACATAGTATGCGGATTTG 58.084 34.615 10.16 0.00 0.00 2.32
58 59 7.766738 TGAACTTTACATAGTATGCGGATTTGA 59.233 33.333 10.16 0.00 0.00 2.69
59 60 8.500753 AACTTTACATAGTATGCGGATTTGAA 57.499 30.769 10.16 0.00 0.00 2.69
60 61 8.500753 ACTTTACATAGTATGCGGATTTGAAA 57.499 30.769 10.16 0.00 0.00 2.69
61 62 8.395633 ACTTTACATAGTATGCGGATTTGAAAC 58.604 33.333 10.16 0.00 0.00 2.78
62 63 7.851387 TTACATAGTATGCGGATTTGAAACA 57.149 32.000 10.16 0.00 0.00 2.83
63 64 6.751514 ACATAGTATGCGGATTTGAAACAA 57.248 33.333 10.16 0.00 0.00 2.83
64 65 6.785191 ACATAGTATGCGGATTTGAAACAAG 58.215 36.000 10.16 0.00 0.00 3.16
65 66 6.374333 ACATAGTATGCGGATTTGAAACAAGT 59.626 34.615 10.16 0.00 0.00 3.16
66 67 7.551262 ACATAGTATGCGGATTTGAAACAAGTA 59.449 33.333 10.16 0.00 0.00 2.24
67 68 6.178239 AGTATGCGGATTTGAAACAAGTAC 57.822 37.500 0.00 0.00 0.00 2.73
68 69 3.529634 TGCGGATTTGAAACAAGTACG 57.470 42.857 7.14 7.14 0.00 3.67
69 70 2.239201 GCGGATTTGAAACAAGTACGC 58.761 47.619 17.46 17.46 37.66 4.42
70 71 2.492001 CGGATTTGAAACAAGTACGCG 58.508 47.619 3.53 3.53 0.00 6.01
71 72 2.156117 CGGATTTGAAACAAGTACGCGA 59.844 45.455 15.93 0.00 0.00 5.87
72 73 3.363182 CGGATTTGAAACAAGTACGCGAA 60.363 43.478 15.93 0.00 0.00 4.70
73 74 4.668177 CGGATTTGAAACAAGTACGCGAAT 60.668 41.667 15.93 0.00 0.00 3.34
74 75 5.151389 GGATTTGAAACAAGTACGCGAATT 58.849 37.500 15.93 0.37 0.00 2.17
75 76 5.627780 GGATTTGAAACAAGTACGCGAATTT 59.372 36.000 15.93 3.33 0.00 1.82
76 77 6.183359 GGATTTGAAACAAGTACGCGAATTTC 60.183 38.462 15.93 12.87 0.00 2.17
77 78 4.797693 TGAAACAAGTACGCGAATTTCA 57.202 36.364 15.93 15.19 34.57 2.69
78 79 5.158101 TGAAACAAGTACGCGAATTTCAA 57.842 34.783 15.93 2.28 34.16 2.69
79 80 5.570344 TGAAACAAGTACGCGAATTTCAAA 58.430 33.333 15.93 0.00 34.16 2.69
80 81 6.028368 TGAAACAAGTACGCGAATTTCAAAA 58.972 32.000 15.93 0.00 34.16 2.44
81 82 6.527023 TGAAACAAGTACGCGAATTTCAAAAA 59.473 30.769 15.93 0.00 34.16 1.94
82 83 5.859824 ACAAGTACGCGAATTTCAAAAAC 57.140 34.783 15.93 0.00 0.00 2.43
83 84 5.333513 ACAAGTACGCGAATTTCAAAAACA 58.666 33.333 15.93 0.00 0.00 2.83
84 85 5.228427 ACAAGTACGCGAATTTCAAAAACAC 59.772 36.000 15.93 0.00 0.00 3.32
85 86 5.164606 AGTACGCGAATTTCAAAAACACT 57.835 34.783 15.93 0.00 0.00 3.55
86 87 5.575019 AGTACGCGAATTTCAAAAACACTT 58.425 33.333 15.93 0.00 0.00 3.16
87 88 5.679792 AGTACGCGAATTTCAAAAACACTTC 59.320 36.000 15.93 0.00 0.00 3.01
88 89 4.416620 ACGCGAATTTCAAAAACACTTCA 58.583 34.783 15.93 0.00 0.00 3.02
89 90 5.040635 ACGCGAATTTCAAAAACACTTCAT 58.959 33.333 15.93 0.00 0.00 2.57
90 91 5.051774 ACGCGAATTTCAAAAACACTTCATG 60.052 36.000 15.93 0.00 0.00 3.07
91 92 5.610124 CGCGAATTTCAAAAACACTTCATGG 60.610 40.000 0.00 0.00 0.00 3.66
92 93 5.461737 GCGAATTTCAAAAACACTTCATGGA 59.538 36.000 0.00 0.00 0.00 3.41
93 94 6.146021 GCGAATTTCAAAAACACTTCATGGAT 59.854 34.615 0.00 0.00 0.00 3.41
94 95 7.307337 GCGAATTTCAAAAACACTTCATGGATT 60.307 33.333 0.00 0.00 0.00 3.01
95 96 8.550376 CGAATTTCAAAAACACTTCATGGATTT 58.450 29.630 0.00 0.00 0.00 2.17
96 97 9.654417 GAATTTCAAAAACACTTCATGGATTTG 57.346 29.630 0.00 0.00 38.42 2.32
97 98 8.961294 ATTTCAAAAACACTTCATGGATTTGA 57.039 26.923 0.00 0.00 41.44 2.69
98 99 8.783833 TTTCAAAAACACTTCATGGATTTGAA 57.216 26.923 7.93 7.93 45.43 2.69
99 100 8.783833 TTCAAAAACACTTCATGGATTTGAAA 57.216 26.923 9.14 0.00 44.85 2.69
100 101 8.783833 TCAAAAACACTTCATGGATTTGAAAA 57.216 26.923 0.00 0.00 40.81 2.29
101 102 9.224267 TCAAAAACACTTCATGGATTTGAAAAA 57.776 25.926 0.00 0.00 40.81 1.94
171 172 9.651913 ACACTGATTTGAAAAAGTACACAAATT 57.348 25.926 0.00 0.00 41.11 1.82
189 190 9.974980 ACACAAATTTAAAAATAGTTCACGGAT 57.025 25.926 0.00 0.00 0.00 4.18
199 200 8.587952 AAAATAGTTCACGGATTTGAAAAAGG 57.412 30.769 0.00 0.00 37.24 3.11
200 201 6.894339 ATAGTTCACGGATTTGAAAAAGGT 57.106 33.333 0.00 0.00 37.24 3.50
201 202 7.989416 ATAGTTCACGGATTTGAAAAAGGTA 57.011 32.000 0.00 0.00 37.24 3.08
202 203 6.894339 AGTTCACGGATTTGAAAAAGGTAT 57.106 33.333 0.00 0.00 37.24 2.73
203 204 7.284919 AGTTCACGGATTTGAAAAAGGTATT 57.715 32.000 0.00 0.00 37.24 1.89
204 205 7.722363 AGTTCACGGATTTGAAAAAGGTATTT 58.278 30.769 0.00 0.00 37.24 1.40
205 206 8.201464 AGTTCACGGATTTGAAAAAGGTATTTT 58.799 29.630 0.00 0.00 40.37 1.82
233 234 2.611225 AAAAATGTGCGGCCTTGAAA 57.389 40.000 0.00 0.00 0.00 2.69
234 235 2.611225 AAAATGTGCGGCCTTGAAAA 57.389 40.000 0.00 0.00 0.00 2.29
235 236 2.611225 AAATGTGCGGCCTTGAAAAA 57.389 40.000 0.00 0.00 0.00 1.94
311 312 6.911484 AAAAATTACGCGAATTTGAGTCAG 57.089 33.333 15.93 0.00 45.21 3.51
312 313 3.658351 ATTACGCGAATTTGAGTCAGC 57.342 42.857 15.93 0.00 0.00 4.26
313 314 2.073117 TACGCGAATTTGAGTCAGCA 57.927 45.000 15.93 0.00 0.00 4.41
314 315 0.512952 ACGCGAATTTGAGTCAGCAC 59.487 50.000 15.93 0.00 0.00 4.40
315 316 0.179215 CGCGAATTTGAGTCAGCACC 60.179 55.000 0.00 0.00 0.00 5.01
316 317 0.179215 GCGAATTTGAGTCAGCACCG 60.179 55.000 0.00 0.00 0.00 4.94
317 318 0.443869 CGAATTTGAGTCAGCACCGG 59.556 55.000 0.00 0.00 0.00 5.28
318 319 1.523758 GAATTTGAGTCAGCACCGGT 58.476 50.000 0.00 0.00 0.00 5.28
319 320 1.464997 GAATTTGAGTCAGCACCGGTC 59.535 52.381 2.59 0.00 0.00 4.79
320 321 0.396435 ATTTGAGTCAGCACCGGTCA 59.604 50.000 2.59 0.00 0.00 4.02
321 322 0.249868 TTTGAGTCAGCACCGGTCAG 60.250 55.000 2.59 0.00 0.00 3.51
322 323 1.112916 TTGAGTCAGCACCGGTCAGA 61.113 55.000 2.59 0.00 0.00 3.27
323 324 1.112916 TGAGTCAGCACCGGTCAGAA 61.113 55.000 2.59 0.00 0.00 3.02
324 325 0.667792 GAGTCAGCACCGGTCAGAAC 60.668 60.000 2.59 0.68 0.00 3.01
325 326 1.668151 GTCAGCACCGGTCAGAACC 60.668 63.158 2.59 0.00 42.66 3.62
333 334 3.153825 GGTCAGAACCGGGGTCAA 58.846 61.111 15.76 0.00 35.36 3.18
334 335 1.683441 GGTCAGAACCGGGGTCAAT 59.317 57.895 15.76 0.00 35.36 2.57
335 336 0.392595 GGTCAGAACCGGGGTCAATC 60.393 60.000 15.76 3.46 35.36 2.67
336 337 0.323629 GTCAGAACCGGGGTCAATCA 59.676 55.000 15.76 0.00 0.00 2.57
337 338 0.613260 TCAGAACCGGGGTCAATCAG 59.387 55.000 15.76 0.00 0.00 2.90
338 339 1.026718 CAGAACCGGGGTCAATCAGC 61.027 60.000 15.76 0.00 0.00 4.26
339 340 1.002624 GAACCGGGGTCAATCAGCA 60.003 57.895 7.34 0.00 0.00 4.41
340 341 1.303317 AACCGGGGTCAATCAGCAC 60.303 57.895 6.32 0.00 0.00 4.40
341 342 1.779061 AACCGGGGTCAATCAGCACT 61.779 55.000 6.32 0.00 0.00 4.40
342 343 0.907704 ACCGGGGTCAATCAGCACTA 60.908 55.000 6.32 0.00 0.00 2.74
343 344 0.251916 CCGGGGTCAATCAGCACTAA 59.748 55.000 0.00 0.00 0.00 2.24
344 345 1.339631 CCGGGGTCAATCAGCACTAAA 60.340 52.381 0.00 0.00 0.00 1.85
345 346 2.432444 CGGGGTCAATCAGCACTAAAA 58.568 47.619 0.00 0.00 0.00 1.52
346 347 2.161609 CGGGGTCAATCAGCACTAAAAC 59.838 50.000 0.00 0.00 0.00 2.43
347 348 2.492088 GGGGTCAATCAGCACTAAAACC 59.508 50.000 0.00 0.00 0.00 3.27
348 349 2.161609 GGGTCAATCAGCACTAAAACCG 59.838 50.000 0.00 0.00 0.00 4.44
349 350 2.161609 GGTCAATCAGCACTAAAACCGG 59.838 50.000 0.00 0.00 0.00 5.28
350 351 2.812011 GTCAATCAGCACTAAAACCGGT 59.188 45.455 0.00 0.00 0.00 5.28
351 352 3.071479 TCAATCAGCACTAAAACCGGTC 58.929 45.455 8.04 0.00 0.00 4.79
352 353 2.811431 CAATCAGCACTAAAACCGGTCA 59.189 45.455 8.04 0.00 0.00 4.02
353 354 2.623878 TCAGCACTAAAACCGGTCAA 57.376 45.000 8.04 0.00 0.00 3.18
354 355 2.920524 TCAGCACTAAAACCGGTCAAA 58.079 42.857 8.04 0.00 0.00 2.69
355 356 3.280295 TCAGCACTAAAACCGGTCAAAA 58.720 40.909 8.04 0.00 0.00 2.44
356 357 3.886505 TCAGCACTAAAACCGGTCAAAAT 59.113 39.130 8.04 0.00 0.00 1.82
357 358 4.023536 TCAGCACTAAAACCGGTCAAAATC 60.024 41.667 8.04 0.00 0.00 2.17
358 359 3.886505 AGCACTAAAACCGGTCAAAATCA 59.113 39.130 8.04 0.00 0.00 2.57
359 360 4.339814 AGCACTAAAACCGGTCAAAATCAA 59.660 37.500 8.04 0.00 0.00 2.57
360 361 4.679654 GCACTAAAACCGGTCAAAATCAAG 59.320 41.667 8.04 0.00 0.00 3.02
361 362 5.506649 GCACTAAAACCGGTCAAAATCAAGA 60.507 40.000 8.04 0.00 0.00 3.02
362 363 5.912955 CACTAAAACCGGTCAAAATCAAGAC 59.087 40.000 8.04 0.00 0.00 3.01
370 371 2.484264 GTCAAAATCAAGACCAGGGACG 59.516 50.000 0.00 0.00 0.00 4.79
371 372 2.370519 TCAAAATCAAGACCAGGGACGA 59.629 45.455 0.00 0.00 0.00 4.20
372 373 3.146066 CAAAATCAAGACCAGGGACGAA 58.854 45.455 0.00 0.00 0.00 3.85
373 374 2.474410 AATCAAGACCAGGGACGAAC 57.526 50.000 0.00 0.00 0.00 3.95
374 375 0.613777 ATCAAGACCAGGGACGAACC 59.386 55.000 0.00 0.00 38.08 3.62
375 376 0.471211 TCAAGACCAGGGACGAACCT 60.471 55.000 0.00 0.00 43.08 3.50
376 377 0.396811 CAAGACCAGGGACGAACCTT 59.603 55.000 0.00 0.00 39.34 3.50
377 378 0.396811 AAGACCAGGGACGAACCTTG 59.603 55.000 8.07 8.07 44.09 3.61
378 379 0.763223 AGACCAGGGACGAACCTTGT 60.763 55.000 12.30 9.66 43.14 3.16
379 380 0.320508 GACCAGGGACGAACCTTGTC 60.321 60.000 14.77 14.77 43.40 3.18
383 384 2.739132 GGACGAACCTTGTCCGGT 59.261 61.111 0.00 0.00 45.82 5.28
385 386 0.533531 GGACGAACCTTGTCCGGTTT 60.534 55.000 0.00 0.00 46.85 3.27
386 387 1.302366 GACGAACCTTGTCCGGTTTT 58.698 50.000 0.00 0.00 46.85 2.43
387 388 1.672363 GACGAACCTTGTCCGGTTTTT 59.328 47.619 0.00 0.00 46.85 1.94
406 407 4.599047 TTTTTAGTTGGGGTGCAAGATG 57.401 40.909 0.00 0.00 0.00 2.90
407 408 2.969821 TTAGTTGGGGTGCAAGATGT 57.030 45.000 0.00 0.00 0.00 3.06
408 409 2.489938 TAGTTGGGGTGCAAGATGTC 57.510 50.000 0.00 0.00 0.00 3.06
409 410 0.251341 AGTTGGGGTGCAAGATGTCC 60.251 55.000 0.00 0.00 0.00 4.02
410 411 1.303236 TTGGGGTGCAAGATGTCCG 60.303 57.895 0.00 0.00 0.00 4.79
411 412 2.438434 GGGGTGCAAGATGTCCGG 60.438 66.667 0.00 0.00 0.00 5.14
412 413 2.351276 GGGTGCAAGATGTCCGGT 59.649 61.111 0.00 0.00 0.00 5.28
413 414 1.303317 GGGTGCAAGATGTCCGGTT 60.303 57.895 0.00 0.00 0.00 4.44
414 415 0.893727 GGGTGCAAGATGTCCGGTTT 60.894 55.000 0.00 0.00 0.00 3.27
415 416 0.521735 GGTGCAAGATGTCCGGTTTC 59.478 55.000 0.00 0.00 0.00 2.78
416 417 0.165944 GTGCAAGATGTCCGGTTTCG 59.834 55.000 0.00 0.00 0.00 3.46
417 418 0.034198 TGCAAGATGTCCGGTTTCGA 59.966 50.000 0.00 0.00 39.00 3.71
418 419 1.153353 GCAAGATGTCCGGTTTCGAA 58.847 50.000 0.00 0.00 39.00 3.71
419 420 1.128692 GCAAGATGTCCGGTTTCGAAG 59.871 52.381 0.00 0.00 39.00 3.79
420 421 2.413837 CAAGATGTCCGGTTTCGAAGT 58.586 47.619 0.00 0.00 39.00 3.01
421 422 2.806244 CAAGATGTCCGGTTTCGAAGTT 59.194 45.455 0.00 0.00 39.00 2.66
422 423 2.413837 AGATGTCCGGTTTCGAAGTTG 58.586 47.619 0.00 0.00 39.00 3.16
423 424 2.036733 AGATGTCCGGTTTCGAAGTTGA 59.963 45.455 0.00 0.00 39.00 3.18
424 425 1.860676 TGTCCGGTTTCGAAGTTGAG 58.139 50.000 0.00 0.00 39.00 3.02
425 426 1.145803 GTCCGGTTTCGAAGTTGAGG 58.854 55.000 0.00 0.00 39.00 3.86
426 427 0.034337 TCCGGTTTCGAAGTTGAGGG 59.966 55.000 0.00 0.00 39.00 4.30
427 428 0.034337 CCGGTTTCGAAGTTGAGGGA 59.966 55.000 0.00 0.00 39.00 4.20
428 429 1.338769 CCGGTTTCGAAGTTGAGGGAT 60.339 52.381 0.00 0.00 39.00 3.85
429 430 2.423577 CGGTTTCGAAGTTGAGGGATT 58.576 47.619 0.00 0.00 39.00 3.01
430 431 3.592059 CGGTTTCGAAGTTGAGGGATTA 58.408 45.455 0.00 0.00 39.00 1.75
431 432 3.998341 CGGTTTCGAAGTTGAGGGATTAA 59.002 43.478 0.00 0.00 39.00 1.40
432 433 4.453136 CGGTTTCGAAGTTGAGGGATTAAA 59.547 41.667 0.00 0.00 39.00 1.52
433 434 5.123344 CGGTTTCGAAGTTGAGGGATTAAAT 59.877 40.000 0.00 0.00 39.00 1.40
434 435 6.552629 GGTTTCGAAGTTGAGGGATTAAATC 58.447 40.000 0.00 0.00 0.00 2.17
435 436 6.374613 GGTTTCGAAGTTGAGGGATTAAATCT 59.625 38.462 0.00 0.00 0.00 2.40
436 437 7.551617 GGTTTCGAAGTTGAGGGATTAAATCTA 59.448 37.037 0.00 0.00 0.00 1.98
437 438 8.604890 GTTTCGAAGTTGAGGGATTAAATCTAG 58.395 37.037 0.00 0.00 0.00 2.43
438 439 7.655521 TCGAAGTTGAGGGATTAAATCTAGA 57.344 36.000 0.00 0.00 0.00 2.43
439 440 7.490000 TCGAAGTTGAGGGATTAAATCTAGAC 58.510 38.462 0.00 0.00 0.00 2.59
440 441 7.342284 TCGAAGTTGAGGGATTAAATCTAGACT 59.658 37.037 0.00 0.00 0.00 3.24
441 442 7.982354 CGAAGTTGAGGGATTAAATCTAGACTT 59.018 37.037 0.00 0.00 0.00 3.01
442 443 9.320352 GAAGTTGAGGGATTAAATCTAGACTTC 57.680 37.037 0.00 0.00 33.75 3.01
443 444 7.493367 AGTTGAGGGATTAAATCTAGACTTCG 58.507 38.462 0.00 0.00 0.00 3.79
444 445 5.844004 TGAGGGATTAAATCTAGACTTCGC 58.156 41.667 0.00 0.00 0.00 4.70
445 446 4.872664 AGGGATTAAATCTAGACTTCGCG 58.127 43.478 0.00 0.00 0.00 5.87
446 447 3.429207 GGGATTAAATCTAGACTTCGCGC 59.571 47.826 0.00 0.00 0.00 6.86
447 448 4.049186 GGATTAAATCTAGACTTCGCGCA 58.951 43.478 8.75 0.00 0.00 6.09
448 449 4.149046 GGATTAAATCTAGACTTCGCGCAG 59.851 45.833 8.75 3.63 0.00 5.18
449 450 2.941453 AAATCTAGACTTCGCGCAGA 57.059 45.000 13.98 2.49 0.00 4.26
450 451 2.483583 AATCTAGACTTCGCGCAGAG 57.516 50.000 13.98 6.86 0.00 3.35
451 452 1.384525 ATCTAGACTTCGCGCAGAGT 58.615 50.000 13.98 10.64 0.00 3.24
452 453 1.166129 TCTAGACTTCGCGCAGAGTT 58.834 50.000 13.98 0.00 0.00 3.01
453 454 1.540267 TCTAGACTTCGCGCAGAGTTT 59.460 47.619 13.98 8.30 0.00 2.66
454 455 2.745821 TCTAGACTTCGCGCAGAGTTTA 59.254 45.455 13.98 9.04 0.00 2.01
455 456 1.983972 AGACTTCGCGCAGAGTTTAG 58.016 50.000 13.98 2.85 0.00 1.85
456 457 1.269998 AGACTTCGCGCAGAGTTTAGT 59.730 47.619 13.98 6.14 0.00 2.24
457 458 1.387084 GACTTCGCGCAGAGTTTAGTG 59.613 52.381 13.98 0.00 0.00 2.74
458 459 0.716108 CTTCGCGCAGAGTTTAGTGG 59.284 55.000 8.75 0.00 0.00 4.00
459 460 0.669318 TTCGCGCAGAGTTTAGTGGG 60.669 55.000 8.75 0.00 0.00 4.61
460 461 1.080093 CGCGCAGAGTTTAGTGGGA 60.080 57.895 8.75 0.00 0.00 4.37
461 462 0.669318 CGCGCAGAGTTTAGTGGGAA 60.669 55.000 8.75 0.00 0.00 3.97
462 463 1.519408 GCGCAGAGTTTAGTGGGAAA 58.481 50.000 0.30 0.00 0.00 3.13
463 464 1.877443 GCGCAGAGTTTAGTGGGAAAA 59.123 47.619 0.30 0.00 0.00 2.29
464 465 2.292292 GCGCAGAGTTTAGTGGGAAAAA 59.708 45.455 0.30 0.00 0.00 1.94
489 490 8.480643 AAGTATACTTTTCTCAACCGAAGATG 57.519 34.615 12.50 0.00 30.82 2.90
490 491 7.612677 AGTATACTTTTCTCAACCGAAGATGT 58.387 34.615 0.00 0.00 0.00 3.06
491 492 6.969828 ATACTTTTCTCAACCGAAGATGTC 57.030 37.500 0.00 0.00 0.00 3.06
508 509 9.517361 CGAAGATGTCGTCAATAATATTTTAGC 57.483 33.333 0.00 0.00 45.09 3.09
513 514 9.998106 ATGTCGTCAATAATATTTTAGCTAGGT 57.002 29.630 0.00 0.00 0.00 3.08
514 515 9.256477 TGTCGTCAATAATATTTTAGCTAGGTG 57.744 33.333 4.27 0.00 0.00 4.00
515 516 8.709646 GTCGTCAATAATATTTTAGCTAGGTGG 58.290 37.037 4.27 0.00 0.00 4.61
516 517 7.876068 TCGTCAATAATATTTTAGCTAGGTGGG 59.124 37.037 4.27 0.00 0.00 4.61
517 518 7.119262 CGTCAATAATATTTTAGCTAGGTGGGG 59.881 40.741 4.27 0.00 0.00 4.96
518 519 7.942894 GTCAATAATATTTTAGCTAGGTGGGGT 59.057 37.037 4.27 0.00 0.00 4.95
519 520 7.942341 TCAATAATATTTTAGCTAGGTGGGGTG 59.058 37.037 4.27 0.00 0.00 4.61
520 521 5.727243 AATATTTTAGCTAGGTGGGGTGT 57.273 39.130 4.27 0.00 0.00 4.16
521 522 5.727243 ATATTTTAGCTAGGTGGGGTGTT 57.273 39.130 4.27 0.00 0.00 3.32
522 523 6.835029 ATATTTTAGCTAGGTGGGGTGTTA 57.165 37.500 4.27 0.00 0.00 2.41
523 524 5.727243 ATTTTAGCTAGGTGGGGTGTTAT 57.273 39.130 4.27 0.00 0.00 1.89
524 525 4.765813 TTTAGCTAGGTGGGGTGTTATC 57.234 45.455 4.27 0.00 0.00 1.75
525 526 1.508256 AGCTAGGTGGGGTGTTATCC 58.492 55.000 0.00 0.00 0.00 2.59
526 527 1.209621 GCTAGGTGGGGTGTTATCCA 58.790 55.000 0.00 0.00 0.00 3.41
535 536 5.560722 TGGGGTGTTATCCACTACATATG 57.439 43.478 0.00 0.00 43.94 1.78
536 537 4.349636 TGGGGTGTTATCCACTACATATGG 59.650 45.833 7.80 0.00 43.94 2.74
537 538 4.263331 GGGGTGTTATCCACTACATATGGG 60.263 50.000 7.80 2.11 43.94 4.00
538 539 4.324267 GGTGTTATCCACTACATATGGGC 58.676 47.826 7.80 0.00 43.94 5.36
539 540 4.324267 GTGTTATCCACTACATATGGGCC 58.676 47.826 7.80 0.00 41.11 5.80
540 541 4.041691 GTGTTATCCACTACATATGGGCCT 59.958 45.833 4.53 0.00 41.11 5.19
541 542 4.663120 TGTTATCCACTACATATGGGCCTT 59.337 41.667 4.53 0.00 37.85 4.35
542 543 5.847265 TGTTATCCACTACATATGGGCCTTA 59.153 40.000 4.53 2.64 37.85 2.69
543 544 6.330514 TGTTATCCACTACATATGGGCCTTAA 59.669 38.462 4.53 0.00 37.85 1.85
544 545 4.699925 TCCACTACATATGGGCCTTAAC 57.300 45.455 4.53 0.00 37.85 2.01
545 546 4.303794 TCCACTACATATGGGCCTTAACT 58.696 43.478 4.53 0.00 37.85 2.24
546 547 4.102524 TCCACTACATATGGGCCTTAACTG 59.897 45.833 4.53 1.67 37.85 3.16
547 548 4.141482 CCACTACATATGGGCCTTAACTGT 60.141 45.833 4.53 7.93 33.18 3.55
548 549 5.437060 CACTACATATGGGCCTTAACTGTT 58.563 41.667 4.53 0.00 0.00 3.16
549 550 5.296780 CACTACATATGGGCCTTAACTGTTG 59.703 44.000 4.53 8.77 0.00 3.33
550 551 3.631250 ACATATGGGCCTTAACTGTTGG 58.369 45.455 4.53 0.00 0.00 3.77
551 552 2.818751 TATGGGCCTTAACTGTTGGG 57.181 50.000 4.53 6.65 0.00 4.12
552 553 1.080638 ATGGGCCTTAACTGTTGGGA 58.919 50.000 4.53 0.00 0.00 4.37
553 554 0.111639 TGGGCCTTAACTGTTGGGAC 59.888 55.000 4.53 12.95 0.00 4.46
554 555 0.611062 GGGCCTTAACTGTTGGGACC 60.611 60.000 18.78 18.78 40.12 4.46
555 556 0.111639 GGCCTTAACTGTTGGGACCA 59.888 55.000 15.28 0.00 0.00 4.02
556 557 1.272480 GGCCTTAACTGTTGGGACCAT 60.272 52.381 15.28 0.00 0.00 3.55
557 558 1.818674 GCCTTAACTGTTGGGACCATG 59.181 52.381 15.28 0.00 0.00 3.66
558 559 2.817839 GCCTTAACTGTTGGGACCATGT 60.818 50.000 15.28 0.00 0.00 3.21
559 560 2.819608 CCTTAACTGTTGGGACCATGTG 59.180 50.000 2.69 0.00 0.00 3.21
560 561 2.577606 TAACTGTTGGGACCATGTGG 57.422 50.000 2.69 0.00 42.17 4.17
561 562 0.178964 AACTGTTGGGACCATGTGGG 60.179 55.000 3.77 0.00 44.81 4.61
562 563 1.978617 CTGTTGGGACCATGTGGGC 60.979 63.158 3.77 0.00 44.61 5.36
568 569 2.821366 GACCATGTGGGCAGCTCG 60.821 66.667 0.00 0.00 44.76 5.03
569 570 4.415150 ACCATGTGGGCAGCTCGG 62.415 66.667 3.77 0.00 42.05 4.63
570 571 4.415150 CCATGTGGGCAGCTCGGT 62.415 66.667 0.00 0.00 0.00 4.69
571 572 2.821366 CATGTGGGCAGCTCGGTC 60.821 66.667 0.00 0.00 0.00 4.79
572 573 4.457496 ATGTGGGCAGCTCGGTCG 62.457 66.667 0.00 0.00 0.00 4.79
639 640 2.751991 CAGGTCCACTCTCCTGTGT 58.248 57.895 3.38 0.00 44.19 3.72
734 748 0.107945 AGATCCGCTCAAAGGCACTC 60.108 55.000 0.00 0.00 38.49 3.51
769 783 2.847435 ATCGACCCGCCGGAAGAAAC 62.847 60.000 5.05 0.00 0.00 2.78
842 856 2.504519 CCCTCCCCCGATTCGAAC 59.495 66.667 7.83 0.00 0.00 3.95
864 878 1.529309 GTGAGCCTTCATCCTCCCC 59.471 63.158 0.00 0.00 35.39 4.81
874 888 0.766288 CATCCTCCCCCTTCTCTCCC 60.766 65.000 0.00 0.00 0.00 4.30
875 889 2.319410 ATCCTCCCCCTTCTCTCCCG 62.319 65.000 0.00 0.00 0.00 5.14
894 908 6.551227 TCTCCCGATTCATTCTTCATCTCTTA 59.449 38.462 0.00 0.00 0.00 2.10
925 939 4.745484 GGGAATAGACCCTAGGTAGAGT 57.255 50.000 8.29 0.00 45.90 3.24
939 954 2.712627 GGTAGAGTAGCTAGGGTCTCCT 59.287 54.545 0.00 0.00 46.96 3.69
968 983 9.953697 CTAATTCAACTCTACCTACATGTACTC 57.046 37.037 0.08 0.00 0.00 2.59
981 996 2.586648 TGTACTCACTCAGCTGAGGA 57.413 50.000 39.42 31.21 46.13 3.71
1046 1068 1.681793 GCGGTAAGAGCATCCAGTCTA 59.318 52.381 0.00 0.00 33.66 2.59
1056 1078 1.974236 CATCCAGTCTACCCATCCCTC 59.026 57.143 0.00 0.00 0.00 4.30
1093 1115 6.366877 CCAATTTGTTTCATTTCCAGCAGTAG 59.633 38.462 0.00 0.00 0.00 2.57
1132 1159 4.682860 CAGTTTGTTGGATGCTGATGTTTC 59.317 41.667 0.00 0.00 0.00 2.78
1133 1160 4.341806 AGTTTGTTGGATGCTGATGTTTCA 59.658 37.500 0.00 0.00 0.00 2.69
1196 1223 3.712881 GCGTTTGTTCGCGGCTCT 61.713 61.111 6.13 0.00 46.31 4.09
1210 1238 1.134401 CGGCTCTGATTTTCCAGGCTA 60.134 52.381 0.00 0.00 34.99 3.93
1216 1244 1.287425 GATTTTCCAGGCTACGTCCG 58.713 55.000 0.00 0.00 0.00 4.79
1257 1285 2.699809 CGAGTCGCAGCAGCATTC 59.300 61.111 0.00 0.00 42.27 2.67
1327 1373 2.899256 CCTCCTCATTGAGATCCTCCTC 59.101 54.545 15.36 0.00 34.11 3.71
1348 1403 2.358737 GTCAGCTTCCCCACCACG 60.359 66.667 0.00 0.00 0.00 4.94
1644 1699 0.543277 ATCAGATGCCGCAGAGGAAA 59.457 50.000 0.00 0.00 45.00 3.13
1689 1744 0.031857 CCACTATGCGCTCAGAGAGG 59.968 60.000 9.73 2.61 36.29 3.69
1845 1900 2.373540 TTCAGGGTGCGTGTGTATAC 57.626 50.000 0.00 0.00 0.00 1.47
1859 1914 1.099295 GTATACGTTGCAAGGGGGCC 61.099 60.000 22.07 0.00 0.00 5.80
1888 1943 4.457496 CATGCCTCGGCCACGACT 62.457 66.667 2.24 0.00 45.59 4.18
1900 1955 2.041115 CACGACTCAGCTCCCTCGA 61.041 63.158 9.76 0.00 0.00 4.04
1913 1968 0.463204 CCCTCGACTGCTGACATCAT 59.537 55.000 0.00 0.00 0.00 2.45
1928 1983 3.489355 ACATCATTGGAAGTTGTGCTCA 58.511 40.909 0.00 0.00 0.00 4.26
2013 2068 1.732259 CTCGGGTTTCTCCACAATTCG 59.268 52.381 0.00 0.00 38.11 3.34
2079 2134 3.869272 CGCCGGTGATGCTTCTGC 61.869 66.667 10.20 0.00 40.20 4.26
2317 2375 6.441093 TGCATTTTCTATCTGGATGTCAAC 57.559 37.500 0.00 0.00 0.00 3.18
2359 2417 2.711542 CATGGGGTGACAGTAAAGGAC 58.288 52.381 0.00 0.00 0.00 3.85
2531 2619 4.442332 CGGTTTGGTATAGCTGTGGTATGA 60.442 45.833 0.00 0.00 0.00 2.15
2690 2780 8.128322 AGTATAGAACATGTATAGGAGCTTGG 57.872 38.462 0.00 0.00 0.00 3.61
2706 2796 3.084786 GCTTGGCCTCTGTACTTCATTT 58.915 45.455 3.32 0.00 0.00 2.32
2710 2800 5.036117 TGGCCTCTGTACTTCATTTATCC 57.964 43.478 3.32 0.00 0.00 2.59
2802 2892 7.440255 TGCTGAATCTATGTATGTGATTGTCTG 59.560 37.037 0.00 0.00 31.49 3.51
2803 2893 7.440556 GCTGAATCTATGTATGTGATTGTCTGT 59.559 37.037 0.00 0.00 31.49 3.41
2966 3059 2.959507 AACGCTTGATAATTTGGGCC 57.040 45.000 0.00 0.00 0.00 5.80
2969 3062 1.536709 CGCTTGATAATTTGGGCCTGC 60.537 52.381 4.53 0.00 0.00 4.85
2996 3089 6.127647 TGTCAGGCATTTTTCCTTGTATGATC 60.128 38.462 0.00 0.00 0.00 2.92
3097 3194 5.067023 GCTCTATTGGCTGTAGCTTTTGATT 59.933 40.000 3.63 0.00 41.70 2.57
3224 3329 6.975949 TCTACTATATCCTGATCCTTCCTCC 58.024 44.000 0.00 0.00 0.00 4.30
3235 3340 2.266279 TCCTTCCTCCGTTTCCTTGAT 58.734 47.619 0.00 0.00 0.00 2.57
3307 3412 0.108898 CGACAAGGGTGAGCAGAGAG 60.109 60.000 0.00 0.00 0.00 3.20
3730 3941 2.362736 AGTGCATAGCATGTTCCAGTG 58.637 47.619 0.00 0.00 41.91 3.66
3892 4103 3.008594 TGGTAACATAACTGGGGTCACTG 59.991 47.826 0.00 0.00 46.17 3.66
4071 4282 5.363939 AGTTCTCTGTTCTTCTTCCTTGTG 58.636 41.667 0.00 0.00 0.00 3.33
4145 4358 7.887996 TGCTAAGGCAATATTTTTGTTTCAG 57.112 32.000 0.00 0.00 46.36 3.02
4146 4359 6.368516 TGCTAAGGCAATATTTTTGTTTCAGC 59.631 34.615 0.00 0.00 46.36 4.26
4147 4360 6.591448 GCTAAGGCAATATTTTTGTTTCAGCT 59.409 34.615 0.00 0.00 38.54 4.24
4148 4361 7.118245 GCTAAGGCAATATTTTTGTTTCAGCTT 59.882 33.333 0.00 0.00 38.54 3.74
4149 4362 6.790285 AGGCAATATTTTTGTTTCAGCTTG 57.210 33.333 0.00 0.00 0.00 4.01
4150 4363 5.702209 AGGCAATATTTTTGTTTCAGCTTGG 59.298 36.000 0.00 0.00 0.00 3.61
4151 4364 5.700373 GGCAATATTTTTGTTTCAGCTTGGA 59.300 36.000 0.00 0.00 0.00 3.53
4152 4365 6.204495 GGCAATATTTTTGTTTCAGCTTGGAA 59.796 34.615 0.00 0.00 0.00 3.53
4153 4366 7.071414 GCAATATTTTTGTTTCAGCTTGGAAC 58.929 34.615 0.00 0.00 0.00 3.62
4154 4367 7.254727 GCAATATTTTTGTTTCAGCTTGGAACA 60.255 33.333 6.06 6.06 0.00 3.18
4155 4368 7.951530 ATATTTTTGTTTCAGCTTGGAACAG 57.048 32.000 9.15 0.00 42.39 3.16
4156 4369 5.398603 TTTTTGTTTCAGCTTGGAACAGA 57.601 34.783 9.15 4.14 42.39 3.41
4157 4370 5.398603 TTTTGTTTCAGCTTGGAACAGAA 57.601 34.783 9.15 8.72 42.39 3.02
4158 4371 5.398603 TTTGTTTCAGCTTGGAACAGAAA 57.601 34.783 9.15 0.79 42.39 2.52
4159 4372 5.398603 TTGTTTCAGCTTGGAACAGAAAA 57.601 34.783 9.15 0.00 42.39 2.29
4160 4373 5.596836 TGTTTCAGCTTGGAACAGAAAAT 57.403 34.783 6.06 0.00 42.39 1.82
4161 4374 5.350633 TGTTTCAGCTTGGAACAGAAAATG 58.649 37.500 6.06 0.00 42.39 2.32
4162 4375 3.648339 TCAGCTTGGAACAGAAAATGC 57.352 42.857 0.00 0.00 42.39 3.56
4163 4376 2.297033 TCAGCTTGGAACAGAAAATGCC 59.703 45.455 0.00 0.00 42.39 4.40
4164 4377 2.036217 CAGCTTGGAACAGAAAATGCCA 59.964 45.455 0.00 0.00 42.39 4.92
4165 4378 2.901839 AGCTTGGAACAGAAAATGCCAT 59.098 40.909 0.00 0.00 42.39 4.40
4166 4379 2.997986 GCTTGGAACAGAAAATGCCATG 59.002 45.455 0.00 0.00 42.39 3.66
4167 4380 3.555586 GCTTGGAACAGAAAATGCCATGT 60.556 43.478 0.00 0.00 42.39 3.21
4168 4381 4.321899 GCTTGGAACAGAAAATGCCATGTA 60.322 41.667 0.00 0.00 42.39 2.29
4169 4382 5.782047 CTTGGAACAGAAAATGCCATGTAA 58.218 37.500 0.00 0.00 42.39 2.41
4170 4383 5.798125 TGGAACAGAAAATGCCATGTAAA 57.202 34.783 0.00 0.00 0.00 2.01
4171 4384 5.782047 TGGAACAGAAAATGCCATGTAAAG 58.218 37.500 0.00 0.00 0.00 1.85
4172 4385 5.538053 TGGAACAGAAAATGCCATGTAAAGA 59.462 36.000 0.00 0.00 0.00 2.52
4173 4386 6.041409 TGGAACAGAAAATGCCATGTAAAGAA 59.959 34.615 0.00 0.00 0.00 2.52
4174 4387 6.366061 GGAACAGAAAATGCCATGTAAAGAAC 59.634 38.462 0.00 0.00 0.00 3.01
4175 4388 6.403866 ACAGAAAATGCCATGTAAAGAACA 57.596 33.333 0.00 0.00 43.86 3.18
4176 4389 6.815089 ACAGAAAATGCCATGTAAAGAACAA 58.185 32.000 0.00 0.00 42.70 2.83
4177 4390 6.925165 ACAGAAAATGCCATGTAAAGAACAAG 59.075 34.615 0.00 0.00 42.70 3.16
4185 4398 5.269459 CATGTAAAGAACAAGGACACGAG 57.731 43.478 0.00 0.00 42.70 4.18
4186 4399 3.724374 TGTAAAGAACAAGGACACGAGG 58.276 45.455 0.00 0.00 34.29 4.63
4187 4400 3.385433 TGTAAAGAACAAGGACACGAGGA 59.615 43.478 0.00 0.00 34.29 3.71
4188 4401 3.553828 AAAGAACAAGGACACGAGGAA 57.446 42.857 0.00 0.00 0.00 3.36
4189 4402 2.821991 AGAACAAGGACACGAGGAAG 57.178 50.000 0.00 0.00 0.00 3.46
4190 4403 2.040178 AGAACAAGGACACGAGGAAGT 58.960 47.619 0.00 0.00 0.00 3.01
4191 4404 2.434702 AGAACAAGGACACGAGGAAGTT 59.565 45.455 0.00 0.00 0.00 2.66
4192 4405 2.528041 ACAAGGACACGAGGAAGTTC 57.472 50.000 0.00 0.00 0.00 3.01
4193 4406 1.070289 ACAAGGACACGAGGAAGTTCC 59.930 52.381 14.54 14.54 36.58 3.62
4204 4417 1.276622 GGAAGTTCCTAGTGAGCCCA 58.723 55.000 15.09 0.00 32.53 5.36
4205 4418 1.840635 GGAAGTTCCTAGTGAGCCCAT 59.159 52.381 15.09 0.00 32.53 4.00
4206 4419 3.039011 GGAAGTTCCTAGTGAGCCCATA 58.961 50.000 15.09 0.00 32.53 2.74
4207 4420 3.648545 GGAAGTTCCTAGTGAGCCCATAT 59.351 47.826 15.09 0.00 32.53 1.78
4208 4421 4.103311 GGAAGTTCCTAGTGAGCCCATATT 59.897 45.833 15.09 0.00 32.53 1.28
4209 4422 5.398012 GGAAGTTCCTAGTGAGCCCATATTT 60.398 44.000 15.09 0.00 32.53 1.40
4210 4423 5.297569 AGTTCCTAGTGAGCCCATATTTC 57.702 43.478 0.00 0.00 0.00 2.17
4211 4424 4.103311 AGTTCCTAGTGAGCCCATATTTCC 59.897 45.833 0.00 0.00 0.00 3.13
4212 4425 3.941629 TCCTAGTGAGCCCATATTTCCT 58.058 45.455 0.00 0.00 0.00 3.36
4213 4426 3.904339 TCCTAGTGAGCCCATATTTCCTC 59.096 47.826 0.00 0.00 0.00 3.71
4214 4427 3.906846 CCTAGTGAGCCCATATTTCCTCT 59.093 47.826 0.00 0.00 0.00 3.69
4215 4428 3.853355 AGTGAGCCCATATTTCCTCTG 57.147 47.619 0.00 0.00 0.00 3.35
4216 4429 3.118531 AGTGAGCCCATATTTCCTCTGT 58.881 45.455 0.00 0.00 0.00 3.41
4217 4430 4.298626 AGTGAGCCCATATTTCCTCTGTA 58.701 43.478 0.00 0.00 0.00 2.74
4218 4431 4.346418 AGTGAGCCCATATTTCCTCTGTAG 59.654 45.833 0.00 0.00 0.00 2.74
4219 4432 3.071602 TGAGCCCATATTTCCTCTGTAGC 59.928 47.826 0.00 0.00 0.00 3.58
4220 4433 3.321950 AGCCCATATTTCCTCTGTAGCT 58.678 45.455 0.00 0.00 0.00 3.32
4221 4434 3.072184 AGCCCATATTTCCTCTGTAGCTG 59.928 47.826 0.00 0.00 0.00 4.24
4222 4435 3.808618 GCCCATATTTCCTCTGTAGCTGG 60.809 52.174 0.00 0.00 0.00 4.85
4223 4436 3.392616 CCCATATTTCCTCTGTAGCTGGT 59.607 47.826 0.00 0.00 0.00 4.00
4224 4437 4.593206 CCCATATTTCCTCTGTAGCTGGTA 59.407 45.833 0.00 0.00 0.00 3.25
4225 4438 5.279708 CCCATATTTCCTCTGTAGCTGGTAG 60.280 48.000 0.00 0.00 0.00 3.18
4226 4439 3.828875 ATTTCCTCTGTAGCTGGTAGC 57.171 47.619 0.00 0.00 42.84 3.58
4227 4440 2.231716 TTCCTCTGTAGCTGGTAGCA 57.768 50.000 0.00 0.00 45.56 3.49
4228 4441 1.769026 TCCTCTGTAGCTGGTAGCAG 58.231 55.000 17.67 17.67 45.56 4.24
4229 4442 1.285078 TCCTCTGTAGCTGGTAGCAGA 59.715 52.381 25.66 2.38 45.56 4.26
4230 4443 2.103373 CCTCTGTAGCTGGTAGCAGAA 58.897 52.381 25.66 9.59 45.56 3.02
4231 4444 2.159170 CCTCTGTAGCTGGTAGCAGAAC 60.159 54.545 25.66 20.37 45.56 3.01
4232 4445 1.825474 TCTGTAGCTGGTAGCAGAACC 59.175 52.381 25.66 11.44 45.56 3.62
4233 4446 1.827969 CTGTAGCTGGTAGCAGAACCT 59.172 52.381 25.66 14.80 45.56 3.50
4234 4447 1.550524 TGTAGCTGGTAGCAGAACCTG 59.449 52.381 25.66 0.00 45.56 4.00
4235 4448 1.550976 GTAGCTGGTAGCAGAACCTGT 59.449 52.381 25.66 4.63 45.56 4.00
4236 4449 1.938585 AGCTGGTAGCAGAACCTGTA 58.061 50.000 25.66 0.00 45.56 2.74
4237 4450 2.472029 AGCTGGTAGCAGAACCTGTAT 58.528 47.619 25.66 0.00 45.56 2.29
4238 4451 2.840651 AGCTGGTAGCAGAACCTGTATT 59.159 45.455 25.66 0.00 45.56 1.89
4239 4452 2.939103 GCTGGTAGCAGAACCTGTATTG 59.061 50.000 25.66 0.00 41.89 1.90
4240 4453 3.619979 GCTGGTAGCAGAACCTGTATTGT 60.620 47.826 25.66 0.00 41.89 2.71
4241 4454 4.382685 GCTGGTAGCAGAACCTGTATTGTA 60.383 45.833 25.66 0.00 41.89 2.41
4242 4455 5.685075 GCTGGTAGCAGAACCTGTATTGTAT 60.685 44.000 25.66 0.00 41.89 2.29
4243 4456 6.308015 TGGTAGCAGAACCTGTATTGTATT 57.692 37.500 0.00 0.00 40.44 1.89
4244 4457 7.426606 TGGTAGCAGAACCTGTATTGTATTA 57.573 36.000 0.00 0.00 40.44 0.98
4245 4458 7.497595 TGGTAGCAGAACCTGTATTGTATTAG 58.502 38.462 0.00 0.00 40.44 1.73
4246 4459 7.343574 TGGTAGCAGAACCTGTATTGTATTAGA 59.656 37.037 0.00 0.00 40.44 2.10
4247 4460 7.868415 GGTAGCAGAACCTGTATTGTATTAGAG 59.132 40.741 0.00 0.00 36.53 2.43
4248 4461 7.425224 AGCAGAACCTGTATTGTATTAGAGT 57.575 36.000 0.00 0.00 33.43 3.24
4249 4462 7.852263 AGCAGAACCTGTATTGTATTAGAGTT 58.148 34.615 0.00 0.00 33.43 3.01
4250 4463 7.766278 AGCAGAACCTGTATTGTATTAGAGTTG 59.234 37.037 0.00 0.00 33.43 3.16
4251 4464 7.764443 GCAGAACCTGTATTGTATTAGAGTTGA 59.236 37.037 0.00 0.00 33.43 3.18
4252 4465 9.307121 CAGAACCTGTATTGTATTAGAGTTGAG 57.693 37.037 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.841915 TTTTTCAAATCAGTGTTCCTTTTCC 57.158 32.000 0.00 0.00 0.00 3.13
26 27 8.988934 CCGCATACTATGTAAAGTTCATGTATT 58.011 33.333 0.00 0.00 0.00 1.89
27 28 8.364894 TCCGCATACTATGTAAAGTTCATGTAT 58.635 33.333 0.00 0.00 0.00 2.29
28 29 7.718525 TCCGCATACTATGTAAAGTTCATGTA 58.281 34.615 0.00 0.00 0.00 2.29
29 30 6.578944 TCCGCATACTATGTAAAGTTCATGT 58.421 36.000 0.00 0.00 0.00 3.21
30 31 7.658179 ATCCGCATACTATGTAAAGTTCATG 57.342 36.000 0.00 0.00 0.00 3.07
31 32 8.559536 CAAATCCGCATACTATGTAAAGTTCAT 58.440 33.333 0.00 0.00 0.00 2.57
32 33 7.766738 TCAAATCCGCATACTATGTAAAGTTCA 59.233 33.333 0.00 0.00 0.00 3.18
33 34 8.138365 TCAAATCCGCATACTATGTAAAGTTC 57.862 34.615 0.00 0.00 0.00 3.01
34 35 8.500753 TTCAAATCCGCATACTATGTAAAGTT 57.499 30.769 0.00 0.00 0.00 2.66
35 36 8.395633 GTTTCAAATCCGCATACTATGTAAAGT 58.604 33.333 0.00 0.00 0.00 2.66
36 37 8.394877 TGTTTCAAATCCGCATACTATGTAAAG 58.605 33.333 0.00 0.00 0.00 1.85
37 38 8.270080 TGTTTCAAATCCGCATACTATGTAAA 57.730 30.769 0.00 0.00 0.00 2.01
38 39 7.851387 TGTTTCAAATCCGCATACTATGTAA 57.149 32.000 0.00 0.00 0.00 2.41
39 40 7.551262 ACTTGTTTCAAATCCGCATACTATGTA 59.449 33.333 0.00 0.00 0.00 2.29
40 41 6.374333 ACTTGTTTCAAATCCGCATACTATGT 59.626 34.615 0.00 0.00 0.00 2.29
41 42 6.785191 ACTTGTTTCAAATCCGCATACTATG 58.215 36.000 0.00 0.00 0.00 2.23
42 43 7.254319 CGTACTTGTTTCAAATCCGCATACTAT 60.254 37.037 0.00 0.00 0.00 2.12
43 44 6.035220 CGTACTTGTTTCAAATCCGCATACTA 59.965 38.462 0.00 0.00 0.00 1.82
44 45 5.163893 CGTACTTGTTTCAAATCCGCATACT 60.164 40.000 0.00 0.00 0.00 2.12
45 46 5.019498 CGTACTTGTTTCAAATCCGCATAC 58.981 41.667 0.00 0.00 0.00 2.39
46 47 4.436317 GCGTACTTGTTTCAAATCCGCATA 60.436 41.667 0.00 0.00 38.55 3.14
47 48 3.669557 GCGTACTTGTTTCAAATCCGCAT 60.670 43.478 0.00 0.00 38.55 4.73
48 49 2.350007 GCGTACTTGTTTCAAATCCGCA 60.350 45.455 0.00 0.00 38.55 5.69
49 50 2.239201 GCGTACTTGTTTCAAATCCGC 58.761 47.619 0.00 0.00 0.00 5.54
50 51 2.156117 TCGCGTACTTGTTTCAAATCCG 59.844 45.455 5.77 0.00 0.00 4.18
51 52 3.799137 TCGCGTACTTGTTTCAAATCC 57.201 42.857 5.77 0.00 0.00 3.01
52 53 6.358558 TGAAATTCGCGTACTTGTTTCAAATC 59.641 34.615 5.77 0.00 33.97 2.17
53 54 6.202937 TGAAATTCGCGTACTTGTTTCAAAT 58.797 32.000 5.77 0.00 33.97 2.32
54 55 5.570344 TGAAATTCGCGTACTTGTTTCAAA 58.430 33.333 5.77 0.00 33.97 2.69
55 56 5.158101 TGAAATTCGCGTACTTGTTTCAA 57.842 34.783 5.77 0.00 33.97 2.69
56 57 4.797693 TGAAATTCGCGTACTTGTTTCA 57.202 36.364 5.77 7.06 34.35 2.69
57 58 6.485253 TTTTGAAATTCGCGTACTTGTTTC 57.515 33.333 5.77 4.30 0.00 2.78
58 59 6.308282 TGTTTTTGAAATTCGCGTACTTGTTT 59.692 30.769 5.77 0.00 0.00 2.83
59 60 5.800941 TGTTTTTGAAATTCGCGTACTTGTT 59.199 32.000 5.77 0.00 0.00 2.83
60 61 5.228427 GTGTTTTTGAAATTCGCGTACTTGT 59.772 36.000 5.77 0.00 0.00 3.16
61 62 5.454232 AGTGTTTTTGAAATTCGCGTACTTG 59.546 36.000 5.77 0.00 0.00 3.16
62 63 5.575019 AGTGTTTTTGAAATTCGCGTACTT 58.425 33.333 5.77 0.00 0.00 2.24
63 64 5.164606 AGTGTTTTTGAAATTCGCGTACT 57.835 34.783 5.77 0.00 0.00 2.73
64 65 5.452944 TGAAGTGTTTTTGAAATTCGCGTAC 59.547 36.000 5.77 0.00 0.00 3.67
65 66 5.570344 TGAAGTGTTTTTGAAATTCGCGTA 58.430 33.333 5.77 0.00 0.00 4.42
66 67 4.416620 TGAAGTGTTTTTGAAATTCGCGT 58.583 34.783 5.77 0.00 0.00 6.01
67 68 5.357089 CATGAAGTGTTTTTGAAATTCGCG 58.643 37.500 0.00 0.00 0.00 5.87
68 69 5.461737 TCCATGAAGTGTTTTTGAAATTCGC 59.538 36.000 0.00 0.00 0.00 4.70
69 70 7.642071 ATCCATGAAGTGTTTTTGAAATTCG 57.358 32.000 0.00 0.00 0.00 3.34
70 71 9.654417 CAAATCCATGAAGTGTTTTTGAAATTC 57.346 29.630 0.00 0.00 33.21 2.17
71 72 9.393512 TCAAATCCATGAAGTGTTTTTGAAATT 57.606 25.926 0.00 0.00 35.56 1.82
72 73 8.961294 TCAAATCCATGAAGTGTTTTTGAAAT 57.039 26.923 0.00 0.00 35.56 2.17
73 74 8.783833 TTCAAATCCATGAAGTGTTTTTGAAA 57.216 26.923 0.00 0.00 40.26 2.69
74 75 8.783833 TTTCAAATCCATGAAGTGTTTTTGAA 57.216 26.923 0.00 0.00 40.80 2.69
75 76 8.783833 TTTTCAAATCCATGAAGTGTTTTTGA 57.216 26.923 0.00 0.00 40.21 2.69
145 146 9.651913 AATTTGTGTACTTTTTCAAATCAGTGT 57.348 25.926 0.00 0.00 38.84 3.55
163 164 9.974980 ATCCGTGAACTATTTTTAAATTTGTGT 57.025 25.926 0.00 0.00 0.00 3.72
173 174 9.040939 CCTTTTTCAAATCCGTGAACTATTTTT 57.959 29.630 0.00 0.00 37.24 1.94
174 175 8.201464 ACCTTTTTCAAATCCGTGAACTATTTT 58.799 29.630 0.00 0.00 37.24 1.82
175 176 7.722363 ACCTTTTTCAAATCCGTGAACTATTT 58.278 30.769 0.00 0.00 37.24 1.40
176 177 7.284919 ACCTTTTTCAAATCCGTGAACTATT 57.715 32.000 0.00 0.00 37.24 1.73
177 178 6.894339 ACCTTTTTCAAATCCGTGAACTAT 57.106 33.333 0.00 0.00 37.24 2.12
178 179 7.989416 ATACCTTTTTCAAATCCGTGAACTA 57.011 32.000 0.00 0.00 37.24 2.24
179 180 6.894339 ATACCTTTTTCAAATCCGTGAACT 57.106 33.333 0.00 0.00 37.24 3.01
180 181 7.940178 AAATACCTTTTTCAAATCCGTGAAC 57.060 32.000 0.00 0.00 37.24 3.18
181 182 8.950208 AAAAATACCTTTTTCAAATCCGTGAA 57.050 26.923 0.00 0.00 39.77 3.18
214 215 2.611225 TTTCAAGGCCGCACATTTTT 57.389 40.000 0.00 0.00 0.00 1.94
215 216 2.611225 TTTTCAAGGCCGCACATTTT 57.389 40.000 0.00 0.00 0.00 1.82
216 217 2.611225 TTTTTCAAGGCCGCACATTT 57.389 40.000 0.00 0.00 0.00 2.32
288 289 5.342259 GCTGACTCAAATTCGCGTAATTTTT 59.658 36.000 19.59 11.36 43.75 1.94
289 290 4.851558 GCTGACTCAAATTCGCGTAATTTT 59.148 37.500 19.59 10.69 43.75 1.82
290 291 4.083537 TGCTGACTCAAATTCGCGTAATTT 60.084 37.500 17.65 17.65 46.48 1.82
291 292 3.435327 TGCTGACTCAAATTCGCGTAATT 59.565 39.130 5.77 8.31 39.56 1.40
292 293 3.000041 TGCTGACTCAAATTCGCGTAAT 59.000 40.909 5.77 1.63 0.00 1.89
293 294 2.156891 GTGCTGACTCAAATTCGCGTAA 59.843 45.455 5.77 0.00 0.00 3.18
294 295 1.724623 GTGCTGACTCAAATTCGCGTA 59.275 47.619 5.77 0.00 0.00 4.42
295 296 0.512952 GTGCTGACTCAAATTCGCGT 59.487 50.000 5.77 0.00 0.00 6.01
296 297 0.179215 GGTGCTGACTCAAATTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
297 298 0.179215 CGGTGCTGACTCAAATTCGC 60.179 55.000 0.00 0.00 0.00 4.70
298 299 0.443869 CCGGTGCTGACTCAAATTCG 59.556 55.000 0.00 0.00 0.00 3.34
299 300 1.464997 GACCGGTGCTGACTCAAATTC 59.535 52.381 14.63 0.00 0.00 2.17
300 301 1.202758 TGACCGGTGCTGACTCAAATT 60.203 47.619 14.63 0.00 0.00 1.82
301 302 0.396435 TGACCGGTGCTGACTCAAAT 59.604 50.000 14.63 0.00 0.00 2.32
302 303 0.249868 CTGACCGGTGCTGACTCAAA 60.250 55.000 14.63 0.00 0.00 2.69
303 304 1.112916 TCTGACCGGTGCTGACTCAA 61.113 55.000 14.63 0.00 0.00 3.02
304 305 1.112916 TTCTGACCGGTGCTGACTCA 61.113 55.000 14.63 0.00 0.00 3.41
305 306 0.667792 GTTCTGACCGGTGCTGACTC 60.668 60.000 14.63 0.00 0.00 3.36
306 307 1.367840 GTTCTGACCGGTGCTGACT 59.632 57.895 14.63 0.00 0.00 3.41
307 308 1.668151 GGTTCTGACCGGTGCTGAC 60.668 63.158 14.63 5.43 35.91 3.51
308 309 2.741092 GGTTCTGACCGGTGCTGA 59.259 61.111 14.63 10.62 35.91 4.26
316 317 0.392595 GATTGACCCCGGTTCTGACC 60.393 60.000 0.00 0.00 42.87 4.02
317 318 0.323629 TGATTGACCCCGGTTCTGAC 59.676 55.000 0.00 0.00 0.00 3.51
318 319 0.613260 CTGATTGACCCCGGTTCTGA 59.387 55.000 0.00 0.00 0.00 3.27
319 320 1.026718 GCTGATTGACCCCGGTTCTG 61.027 60.000 0.00 0.00 0.00 3.02
320 321 1.299976 GCTGATTGACCCCGGTTCT 59.700 57.895 0.00 0.00 0.00 3.01
321 322 1.002624 TGCTGATTGACCCCGGTTC 60.003 57.895 0.00 0.00 0.00 3.62
322 323 1.303317 GTGCTGATTGACCCCGGTT 60.303 57.895 0.00 0.00 0.00 4.44
323 324 0.907704 TAGTGCTGATTGACCCCGGT 60.908 55.000 0.00 0.00 0.00 5.28
324 325 0.251916 TTAGTGCTGATTGACCCCGG 59.748 55.000 0.00 0.00 0.00 5.73
325 326 2.107950 TTTAGTGCTGATTGACCCCG 57.892 50.000 0.00 0.00 0.00 5.73
326 327 2.492088 GGTTTTAGTGCTGATTGACCCC 59.508 50.000 0.00 0.00 0.00 4.95
327 328 2.161609 CGGTTTTAGTGCTGATTGACCC 59.838 50.000 0.00 0.00 0.00 4.46
328 329 2.161609 CCGGTTTTAGTGCTGATTGACC 59.838 50.000 0.00 0.00 0.00 4.02
329 330 2.812011 ACCGGTTTTAGTGCTGATTGAC 59.188 45.455 0.00 0.00 0.00 3.18
330 331 3.071479 GACCGGTTTTAGTGCTGATTGA 58.929 45.455 9.42 0.00 0.00 2.57
331 332 2.811431 TGACCGGTTTTAGTGCTGATTG 59.189 45.455 9.42 0.00 0.00 2.67
332 333 3.134574 TGACCGGTTTTAGTGCTGATT 57.865 42.857 9.42 0.00 0.00 2.57
333 334 2.851263 TGACCGGTTTTAGTGCTGAT 57.149 45.000 9.42 0.00 0.00 2.90
334 335 2.623878 TTGACCGGTTTTAGTGCTGA 57.376 45.000 9.42 0.00 0.00 4.26
335 336 3.701532 TTTTGACCGGTTTTAGTGCTG 57.298 42.857 9.42 0.00 0.00 4.41
336 337 3.886505 TGATTTTGACCGGTTTTAGTGCT 59.113 39.130 9.42 0.00 0.00 4.40
337 338 4.231718 TGATTTTGACCGGTTTTAGTGC 57.768 40.909 9.42 0.00 0.00 4.40
338 339 5.912955 GTCTTGATTTTGACCGGTTTTAGTG 59.087 40.000 9.42 0.00 0.00 2.74
339 340 5.009310 GGTCTTGATTTTGACCGGTTTTAGT 59.991 40.000 9.42 0.00 42.51 2.24
340 341 5.458015 GGTCTTGATTTTGACCGGTTTTAG 58.542 41.667 9.42 0.00 42.51 1.85
341 342 5.441709 GGTCTTGATTTTGACCGGTTTTA 57.558 39.130 9.42 0.00 42.51 1.52
342 343 4.316205 GGTCTTGATTTTGACCGGTTTT 57.684 40.909 9.42 0.00 42.51 2.43
349 350 2.484264 CGTCCCTGGTCTTGATTTTGAC 59.516 50.000 0.00 0.00 0.00 3.18
350 351 2.370519 TCGTCCCTGGTCTTGATTTTGA 59.629 45.455 0.00 0.00 0.00 2.69
351 352 2.778299 TCGTCCCTGGTCTTGATTTTG 58.222 47.619 0.00 0.00 0.00 2.44
352 353 3.146847 GTTCGTCCCTGGTCTTGATTTT 58.853 45.455 0.00 0.00 0.00 1.82
353 354 2.552373 GGTTCGTCCCTGGTCTTGATTT 60.552 50.000 0.00 0.00 0.00 2.17
354 355 1.003233 GGTTCGTCCCTGGTCTTGATT 59.997 52.381 0.00 0.00 0.00 2.57
355 356 0.613777 GGTTCGTCCCTGGTCTTGAT 59.386 55.000 0.00 0.00 0.00 2.57
356 357 0.471211 AGGTTCGTCCCTGGTCTTGA 60.471 55.000 0.00 0.00 36.75 3.02
357 358 0.396811 AAGGTTCGTCCCTGGTCTTG 59.603 55.000 0.00 0.00 34.19 3.02
358 359 0.396811 CAAGGTTCGTCCCTGGTCTT 59.603 55.000 0.00 0.00 34.19 3.01
359 360 0.763223 ACAAGGTTCGTCCCTGGTCT 60.763 55.000 0.00 0.00 33.11 3.85
360 361 0.320508 GACAAGGTTCGTCCCTGGTC 60.321 60.000 12.73 12.73 45.88 4.02
361 362 1.752833 GACAAGGTTCGTCCCTGGT 59.247 57.895 3.25 3.25 41.72 4.00
362 363 1.003718 GGACAAGGTTCGTCCCTGG 60.004 63.158 0.00 0.00 46.12 4.45
363 364 4.695560 GGACAAGGTTCGTCCCTG 57.304 61.111 0.00 0.00 46.12 4.45
385 386 3.964031 ACATCTTGCACCCCAACTAAAAA 59.036 39.130 0.00 0.00 0.00 1.94
386 387 3.571590 ACATCTTGCACCCCAACTAAAA 58.428 40.909 0.00 0.00 0.00 1.52
387 388 3.153919 GACATCTTGCACCCCAACTAAA 58.846 45.455 0.00 0.00 0.00 1.85
388 389 2.554344 GGACATCTTGCACCCCAACTAA 60.554 50.000 0.00 0.00 0.00 2.24
389 390 1.004277 GGACATCTTGCACCCCAACTA 59.996 52.381 0.00 0.00 0.00 2.24
390 391 0.251341 GGACATCTTGCACCCCAACT 60.251 55.000 0.00 0.00 0.00 3.16
391 392 1.586154 CGGACATCTTGCACCCCAAC 61.586 60.000 0.00 0.00 0.00 3.77
392 393 1.303236 CGGACATCTTGCACCCCAA 60.303 57.895 0.00 0.00 0.00 4.12
393 394 2.350895 CGGACATCTTGCACCCCA 59.649 61.111 0.00 0.00 0.00 4.96
394 395 2.438434 CCGGACATCTTGCACCCC 60.438 66.667 0.00 0.00 0.00 4.95
395 396 0.893727 AAACCGGACATCTTGCACCC 60.894 55.000 9.46 0.00 0.00 4.61
396 397 0.521735 GAAACCGGACATCTTGCACC 59.478 55.000 9.46 0.00 0.00 5.01
397 398 0.165944 CGAAACCGGACATCTTGCAC 59.834 55.000 9.46 0.00 0.00 4.57
398 399 0.034198 TCGAAACCGGACATCTTGCA 59.966 50.000 9.46 0.00 0.00 4.08
399 400 1.128692 CTTCGAAACCGGACATCTTGC 59.871 52.381 9.46 0.00 0.00 4.01
400 401 2.413837 ACTTCGAAACCGGACATCTTG 58.586 47.619 9.46 0.00 0.00 3.02
401 402 2.806244 CAACTTCGAAACCGGACATCTT 59.194 45.455 9.46 0.00 0.00 2.40
402 403 2.036733 TCAACTTCGAAACCGGACATCT 59.963 45.455 9.46 0.00 0.00 2.90
403 404 2.409975 TCAACTTCGAAACCGGACATC 58.590 47.619 9.46 1.62 0.00 3.06
404 405 2.413837 CTCAACTTCGAAACCGGACAT 58.586 47.619 9.46 0.00 0.00 3.06
405 406 1.539496 CCTCAACTTCGAAACCGGACA 60.539 52.381 9.46 0.00 0.00 4.02
406 407 1.145803 CCTCAACTTCGAAACCGGAC 58.854 55.000 9.46 0.00 0.00 4.79
407 408 0.034337 CCCTCAACTTCGAAACCGGA 59.966 55.000 9.46 0.00 0.00 5.14
408 409 0.034337 TCCCTCAACTTCGAAACCGG 59.966 55.000 0.00 0.00 0.00 5.28
409 410 2.094762 ATCCCTCAACTTCGAAACCG 57.905 50.000 0.00 0.00 0.00 4.44
410 411 5.952526 TTTAATCCCTCAACTTCGAAACC 57.047 39.130 0.00 0.00 0.00 3.27
411 412 7.379098 AGATTTAATCCCTCAACTTCGAAAC 57.621 36.000 0.00 0.00 0.00 2.78
412 413 8.537016 TCTAGATTTAATCCCTCAACTTCGAAA 58.463 33.333 0.00 0.00 0.00 3.46
413 414 7.980099 GTCTAGATTTAATCCCTCAACTTCGAA 59.020 37.037 0.78 0.00 0.00 3.71
414 415 7.342284 AGTCTAGATTTAATCCCTCAACTTCGA 59.658 37.037 0.78 0.00 0.00 3.71
415 416 7.493367 AGTCTAGATTTAATCCCTCAACTTCG 58.507 38.462 0.78 0.00 0.00 3.79
416 417 9.320352 GAAGTCTAGATTTAATCCCTCAACTTC 57.680 37.037 0.00 14.40 0.00 3.01
417 418 7.982354 CGAAGTCTAGATTTAATCCCTCAACTT 59.018 37.037 0.00 5.23 0.00 2.66
418 419 7.493367 CGAAGTCTAGATTTAATCCCTCAACT 58.507 38.462 0.00 0.00 0.00 3.16
419 420 6.201234 GCGAAGTCTAGATTTAATCCCTCAAC 59.799 42.308 0.00 0.00 0.00 3.18
420 421 6.281405 GCGAAGTCTAGATTTAATCCCTCAA 58.719 40.000 0.00 0.00 0.00 3.02
421 422 5.507482 CGCGAAGTCTAGATTTAATCCCTCA 60.507 44.000 0.00 0.00 0.00 3.86
422 423 4.918583 CGCGAAGTCTAGATTTAATCCCTC 59.081 45.833 0.00 0.00 0.00 4.30
423 424 4.796618 GCGCGAAGTCTAGATTTAATCCCT 60.797 45.833 12.10 0.00 0.00 4.20
424 425 3.429207 GCGCGAAGTCTAGATTTAATCCC 59.571 47.826 12.10 0.00 0.00 3.85
425 426 4.049186 TGCGCGAAGTCTAGATTTAATCC 58.951 43.478 12.10 0.00 0.00 3.01
426 427 4.976731 TCTGCGCGAAGTCTAGATTTAATC 59.023 41.667 15.21 0.00 0.00 1.75
427 428 4.933330 TCTGCGCGAAGTCTAGATTTAAT 58.067 39.130 15.21 0.00 0.00 1.40
428 429 4.142447 ACTCTGCGCGAAGTCTAGATTTAA 60.142 41.667 15.21 0.00 0.00 1.52
429 430 3.377485 ACTCTGCGCGAAGTCTAGATTTA 59.623 43.478 15.21 0.00 0.00 1.40
430 431 2.164624 ACTCTGCGCGAAGTCTAGATTT 59.835 45.455 15.21 0.00 0.00 2.17
431 432 1.746220 ACTCTGCGCGAAGTCTAGATT 59.254 47.619 15.21 0.00 0.00 2.40
432 433 1.384525 ACTCTGCGCGAAGTCTAGAT 58.615 50.000 15.21 0.00 0.00 1.98
433 434 1.166129 AACTCTGCGCGAAGTCTAGA 58.834 50.000 15.21 3.25 0.00 2.43
434 435 1.983972 AAACTCTGCGCGAAGTCTAG 58.016 50.000 15.21 6.89 0.00 2.43
435 436 2.486982 ACTAAACTCTGCGCGAAGTCTA 59.513 45.455 15.21 5.12 0.00 2.59
436 437 1.269998 ACTAAACTCTGCGCGAAGTCT 59.730 47.619 15.21 4.19 0.00 3.24
437 438 1.387084 CACTAAACTCTGCGCGAAGTC 59.613 52.381 15.21 0.00 0.00 3.01
438 439 1.419374 CACTAAACTCTGCGCGAAGT 58.581 50.000 15.21 8.73 0.00 3.01
439 440 0.716108 CCACTAAACTCTGCGCGAAG 59.284 55.000 12.10 10.02 0.00 3.79
440 441 0.669318 CCCACTAAACTCTGCGCGAA 60.669 55.000 12.10 0.00 0.00 4.70
441 442 1.080093 CCCACTAAACTCTGCGCGA 60.080 57.895 12.10 1.90 0.00 5.87
442 443 0.669318 TTCCCACTAAACTCTGCGCG 60.669 55.000 0.00 0.00 0.00 6.86
443 444 1.519408 TTTCCCACTAAACTCTGCGC 58.481 50.000 0.00 0.00 0.00 6.09
464 465 8.095169 ACATCTTCGGTTGAGAAAAGTATACTT 58.905 33.333 12.50 12.50 37.91 2.24
465 466 7.612677 ACATCTTCGGTTGAGAAAAGTATACT 58.387 34.615 0.00 0.00 0.00 2.12
466 467 7.253684 CGACATCTTCGGTTGAGAAAAGTATAC 60.254 40.741 0.00 0.00 44.60 1.47
467 468 6.750501 CGACATCTTCGGTTGAGAAAAGTATA 59.249 38.462 0.00 0.00 44.60 1.47
468 469 5.577164 CGACATCTTCGGTTGAGAAAAGTAT 59.423 40.000 0.00 0.00 44.60 2.12
469 470 4.921515 CGACATCTTCGGTTGAGAAAAGTA 59.078 41.667 0.00 0.00 44.60 2.24
470 471 3.741344 CGACATCTTCGGTTGAGAAAAGT 59.259 43.478 0.00 0.00 44.60 2.66
471 472 4.313522 CGACATCTTCGGTTGAGAAAAG 57.686 45.455 0.00 0.00 44.60 2.27
487 488 9.998106 ACCTAGCTAAAATATTATTGACGACAT 57.002 29.630 0.00 0.00 0.00 3.06
488 489 9.256477 CACCTAGCTAAAATATTATTGACGACA 57.744 33.333 0.00 0.00 0.00 4.35
489 490 8.709646 CCACCTAGCTAAAATATTATTGACGAC 58.290 37.037 0.00 0.00 0.00 4.34
490 491 7.876068 CCCACCTAGCTAAAATATTATTGACGA 59.124 37.037 0.00 0.00 0.00 4.20
491 492 7.119262 CCCCACCTAGCTAAAATATTATTGACG 59.881 40.741 0.00 0.00 0.00 4.35
492 493 7.942894 ACCCCACCTAGCTAAAATATTATTGAC 59.057 37.037 0.00 0.00 0.00 3.18
493 494 7.942341 CACCCCACCTAGCTAAAATATTATTGA 59.058 37.037 0.00 0.00 0.00 2.57
494 495 7.724061 ACACCCCACCTAGCTAAAATATTATTG 59.276 37.037 0.00 0.00 0.00 1.90
495 496 7.822600 ACACCCCACCTAGCTAAAATATTATT 58.177 34.615 0.00 0.00 0.00 1.40
496 497 7.402448 ACACCCCACCTAGCTAAAATATTAT 57.598 36.000 0.00 0.00 0.00 1.28
497 498 6.835029 ACACCCCACCTAGCTAAAATATTA 57.165 37.500 0.00 0.00 0.00 0.98
498 499 5.727243 ACACCCCACCTAGCTAAAATATT 57.273 39.130 0.00 0.00 0.00 1.28
499 500 5.727243 AACACCCCACCTAGCTAAAATAT 57.273 39.130 0.00 0.00 0.00 1.28
500 501 6.183361 GGATAACACCCCACCTAGCTAAAATA 60.183 42.308 0.00 0.00 0.00 1.40
501 502 5.398695 GGATAACACCCCACCTAGCTAAAAT 60.399 44.000 0.00 0.00 0.00 1.82
502 503 4.080186 GGATAACACCCCACCTAGCTAAAA 60.080 45.833 0.00 0.00 0.00 1.52
503 504 3.457012 GGATAACACCCCACCTAGCTAAA 59.543 47.826 0.00 0.00 0.00 1.85
504 505 3.043418 GGATAACACCCCACCTAGCTAA 58.957 50.000 0.00 0.00 0.00 3.09
505 506 2.022820 TGGATAACACCCCACCTAGCTA 60.023 50.000 0.00 0.00 0.00 3.32
506 507 1.274184 TGGATAACACCCCACCTAGCT 60.274 52.381 0.00 0.00 0.00 3.32
507 508 1.134189 GTGGATAACACCCCACCTAGC 60.134 57.143 0.00 0.00 45.30 3.42
518 519 4.239495 AGGCCCATATGTAGTGGATAACA 58.761 43.478 0.00 0.00 39.12 2.41
519 520 4.910458 AGGCCCATATGTAGTGGATAAC 57.090 45.455 0.00 0.00 39.12 1.89
520 521 6.561070 AGTTAAGGCCCATATGTAGTGGATAA 59.439 38.462 0.00 0.00 39.12 1.75
521 522 6.013725 CAGTTAAGGCCCATATGTAGTGGATA 60.014 42.308 0.00 0.00 39.12 2.59
522 523 4.913968 AGTTAAGGCCCATATGTAGTGGAT 59.086 41.667 0.00 0.00 39.12 3.41
523 524 4.102524 CAGTTAAGGCCCATATGTAGTGGA 59.897 45.833 0.00 0.00 39.12 4.02
524 525 4.141482 ACAGTTAAGGCCCATATGTAGTGG 60.141 45.833 0.00 0.00 36.47 4.00
525 526 5.036117 ACAGTTAAGGCCCATATGTAGTG 57.964 43.478 0.00 0.00 0.00 2.74
526 527 5.437060 CAACAGTTAAGGCCCATATGTAGT 58.563 41.667 0.00 0.00 0.00 2.73
527 528 4.821805 CCAACAGTTAAGGCCCATATGTAG 59.178 45.833 0.00 0.00 0.00 2.74
528 529 4.385865 CCCAACAGTTAAGGCCCATATGTA 60.386 45.833 0.00 0.00 0.00 2.29
529 530 3.627237 CCCAACAGTTAAGGCCCATATGT 60.627 47.826 0.00 0.00 0.00 2.29
530 531 2.958355 CCCAACAGTTAAGGCCCATATG 59.042 50.000 0.00 0.00 0.00 1.78
531 532 2.856231 TCCCAACAGTTAAGGCCCATAT 59.144 45.455 0.00 0.00 0.00 1.78
532 533 2.025699 GTCCCAACAGTTAAGGCCCATA 60.026 50.000 0.00 0.00 0.00 2.74
533 534 1.080638 TCCCAACAGTTAAGGCCCAT 58.919 50.000 0.00 0.00 0.00 4.00
534 535 0.111639 GTCCCAACAGTTAAGGCCCA 59.888 55.000 0.00 0.00 0.00 5.36
535 536 0.611062 GGTCCCAACAGTTAAGGCCC 60.611 60.000 0.00 0.00 0.00 5.80
536 537 0.111639 TGGTCCCAACAGTTAAGGCC 59.888 55.000 0.00 0.00 0.00 5.19
537 538 1.818674 CATGGTCCCAACAGTTAAGGC 59.181 52.381 0.00 0.00 0.00 4.35
538 539 2.819608 CACATGGTCCCAACAGTTAAGG 59.180 50.000 0.00 0.00 0.00 2.69
539 540 2.819608 CCACATGGTCCCAACAGTTAAG 59.180 50.000 0.00 0.00 0.00 1.85
540 541 2.489985 CCCACATGGTCCCAACAGTTAA 60.490 50.000 0.00 0.00 0.00 2.01
541 542 1.074727 CCCACATGGTCCCAACAGTTA 59.925 52.381 0.00 0.00 0.00 2.24
542 543 0.178964 CCCACATGGTCCCAACAGTT 60.179 55.000 0.00 0.00 0.00 3.16
543 544 1.460255 CCCACATGGTCCCAACAGT 59.540 57.895 0.00 0.00 0.00 3.55
544 545 1.978617 GCCCACATGGTCCCAACAG 60.979 63.158 0.00 0.00 36.04 3.16
545 546 2.117206 GCCCACATGGTCCCAACA 59.883 61.111 0.00 0.00 36.04 3.33
546 547 1.978617 CTGCCCACATGGTCCCAAC 60.979 63.158 0.00 0.00 36.04 3.77
547 548 2.440147 CTGCCCACATGGTCCCAA 59.560 61.111 0.00 0.00 36.04 4.12
548 549 4.365111 GCTGCCCACATGGTCCCA 62.365 66.667 0.00 0.00 36.04 4.37
549 550 4.052518 AGCTGCCCACATGGTCCC 62.053 66.667 0.00 0.00 36.04 4.46
550 551 2.439156 GAGCTGCCCACATGGTCC 60.439 66.667 0.00 0.00 36.04 4.46
551 552 2.821366 CGAGCTGCCCACATGGTC 60.821 66.667 0.00 0.00 36.04 4.02
552 553 4.415150 CCGAGCTGCCCACATGGT 62.415 66.667 0.00 0.00 36.04 3.55
553 554 4.415150 ACCGAGCTGCCCACATGG 62.415 66.667 0.00 0.00 37.09 3.66
554 555 2.821366 GACCGAGCTGCCCACATG 60.821 66.667 0.00 0.00 0.00 3.21
555 556 4.457496 CGACCGAGCTGCCCACAT 62.457 66.667 0.00 0.00 0.00 3.21
562 563 4.838486 GAGGCGACGACCGAGCTG 62.838 72.222 0.00 0.00 41.76 4.24
565 566 3.878519 GAGGAGGCGACGACCGAG 61.879 72.222 0.00 0.00 41.76 4.63
568 569 3.519930 GAGGAGGAGGCGACGACC 61.520 72.222 0.00 0.00 0.00 4.79
569 570 3.519930 GGAGGAGGAGGCGACGAC 61.520 72.222 0.00 0.00 0.00 4.34
570 571 4.816984 GGGAGGAGGAGGCGACGA 62.817 72.222 0.00 0.00 0.00 4.20
572 573 3.151022 CTGGGAGGAGGAGGCGAC 61.151 72.222 0.00 0.00 0.00 5.19
575 576 3.791586 GTGCTGGGAGGAGGAGGC 61.792 72.222 0.00 0.00 0.00 4.70
576 577 3.086600 GGTGCTGGGAGGAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
577 578 1.277580 AATGGTGCTGGGAGGAGGAG 61.278 60.000 0.00 0.00 0.00 3.69
578 579 1.229951 AATGGTGCTGGGAGGAGGA 60.230 57.895 0.00 0.00 0.00 3.71
591 592 0.250814 TTTAACGGTGGGCGAATGGT 60.251 50.000 0.00 0.00 0.00 3.55
615 616 2.127708 AGGAGAGTGGACCTGTTTGTT 58.872 47.619 0.00 0.00 34.99 2.83
616 617 1.417890 CAGGAGAGTGGACCTGTTTGT 59.582 52.381 0.00 0.00 45.82 2.83
617 618 2.175878 CAGGAGAGTGGACCTGTTTG 57.824 55.000 0.00 0.00 45.82 2.93
624 625 1.587054 CCGACACAGGAGAGTGGAC 59.413 63.158 0.00 0.00 43.72 4.02
632 633 3.647649 CTGCGATGCCGACACAGGA 62.648 63.158 0.00 0.00 38.22 3.86
685 699 4.363990 AGTCAGTGGTCGCTGGCG 62.364 66.667 8.80 8.80 45.03 5.69
696 710 2.222013 GGGTTTCCCGGGAGTCAGT 61.222 63.158 25.26 0.00 32.13 3.41
734 748 1.142748 GATGCGGTGGAGGAGAGTG 59.857 63.158 0.00 0.00 0.00 3.51
822 836 4.872574 CGAATCGGGGGAGGGGGA 62.873 72.222 0.00 0.00 0.00 4.81
855 869 0.766288 GGGAGAGAAGGGGGAGGATG 60.766 65.000 0.00 0.00 0.00 3.51
861 875 0.691078 TGAATCGGGAGAGAAGGGGG 60.691 60.000 0.00 0.00 45.48 5.40
864 878 4.141846 TGAAGAATGAATCGGGAGAGAAGG 60.142 45.833 0.00 0.00 45.48 3.46
874 888 9.642327 AGATGATAAGAGATGAAGAATGAATCG 57.358 33.333 0.00 0.00 0.00 3.34
894 908 1.546476 GGTCTATTCCCGCGAGATGAT 59.454 52.381 8.23 0.00 0.00 2.45
921 935 1.778484 GGAGGAGACCCTAGCTACTCT 59.222 57.143 7.72 0.93 44.53 3.24
922 936 1.202964 GGGAGGAGACCCTAGCTACTC 60.203 61.905 0.00 0.00 44.53 2.59
923 937 0.854908 GGGAGGAGACCCTAGCTACT 59.145 60.000 0.00 0.00 44.53 2.57
924 938 3.443044 GGGAGGAGACCCTAGCTAC 57.557 63.158 0.00 0.00 44.53 3.58
933 947 5.069383 GGTAGAGTTGAATTAGGGAGGAGAC 59.931 48.000 0.00 0.00 0.00 3.36
935 949 5.212745 AGGTAGAGTTGAATTAGGGAGGAG 58.787 45.833 0.00 0.00 0.00 3.69
939 954 6.901300 ACATGTAGGTAGAGTTGAATTAGGGA 59.099 38.462 0.00 0.00 0.00 4.20
968 983 0.817013 GGAGTCTCCTCAGCTGAGTG 59.183 60.000 35.47 27.82 40.48 3.51
981 996 7.526860 GCATCCATTATCAGAGTATTGGAGTCT 60.527 40.741 0.00 0.00 37.46 3.24
992 1007 4.244066 CTCGGAAGCATCCATTATCAGAG 58.756 47.826 8.98 0.83 46.97 3.35
995 1010 2.972021 TCCTCGGAAGCATCCATTATCA 59.028 45.455 8.98 0.00 46.97 2.15
1046 1068 0.348370 AGGAATCTGGAGGGATGGGT 59.652 55.000 0.00 0.00 0.00 4.51
1056 1078 3.105959 ACAAATTGGGGAGGAATCTGG 57.894 47.619 0.00 0.00 0.00 3.86
1132 1159 2.431419 TGCTTCCACCAATATGGCATTG 59.569 45.455 4.78 0.00 42.67 2.82
1133 1160 2.749600 TGCTTCCACCAATATGGCATT 58.250 42.857 4.78 0.00 42.67 3.56
1191 1218 2.293170 GTAGCCTGGAAAATCAGAGCC 58.707 52.381 0.00 0.00 36.93 4.70
1196 1223 1.404986 CGGACGTAGCCTGGAAAATCA 60.405 52.381 0.00 0.00 0.00 2.57
1210 1238 1.288127 CGGTTTCTTCTCCGGACGT 59.712 57.895 0.00 0.00 42.61 4.34
1216 1244 1.860078 CGCACACGGTTTCTTCTCC 59.140 57.895 0.00 0.00 34.97 3.71
1243 1271 4.527157 GGCGAATGCTGCTGCGAC 62.527 66.667 11.21 6.52 43.34 5.19
1348 1403 3.440356 GAGTGCGGCGCATACAAGC 62.440 63.158 38.43 23.25 41.91 4.01
1465 1520 2.192175 CATAACCAGGCCGACCCC 59.808 66.667 0.00 0.00 36.11 4.95
1679 1734 0.757512 TCATCCATGCCTCTCTGAGC 59.242 55.000 0.00 0.00 0.00 4.26
1705 1760 3.635268 CTGGGCTCTTGGGAGTGGC 62.635 68.421 0.00 0.00 41.38 5.01
1845 1900 4.351054 AGAGGCCCCCTTGCAACG 62.351 66.667 0.00 0.00 31.76 4.10
1888 1943 2.036414 AGCAGTCGAGGGAGCTGA 59.964 61.111 4.30 0.00 35.72 4.26
1900 1955 3.430042 ACTTCCAATGATGTCAGCAGT 57.570 42.857 0.00 0.00 0.00 4.40
1913 1968 2.290367 CGTCAATGAGCACAACTTCCAA 59.710 45.455 0.00 0.00 0.00 3.53
1928 1983 9.155975 GTCAGCCATATAGATTTTATCGTCAAT 57.844 33.333 0.00 0.00 0.00 2.57
2041 2096 0.095245 GTGACATGATGGTGCGAACG 59.905 55.000 0.00 0.00 0.00 3.95
2079 2134 7.124750 TGACATGGATATGGGTGAGATATACAG 59.875 40.741 0.00 0.00 38.66 2.74
2317 2375 0.236711 CTTTCCGCAGTGTCTTGCTG 59.763 55.000 0.00 0.00 41.90 4.41
2332 2390 0.883833 CTGTCACCCCATGCACTTTC 59.116 55.000 0.00 0.00 0.00 2.62
2359 2417 4.747108 GGATAGACATCATTGAACTGTCGG 59.253 45.833 12.46 0.00 43.15 4.79
2478 2544 9.853555 CATATTGCAAAACTATGTAACCTCAAA 57.146 29.630 1.71 0.00 0.00 2.69
2508 2586 2.396590 ACCACAGCTATACCAAACCG 57.603 50.000 0.00 0.00 0.00 4.44
2509 2587 5.031066 TCATACCACAGCTATACCAAACC 57.969 43.478 0.00 0.00 0.00 3.27
2579 2667 5.738909 AGGCAAGCATTATCTAATATCGCT 58.261 37.500 0.00 0.00 0.00 4.93
2690 2780 5.918608 TCAGGATAAATGAAGTACAGAGGC 58.081 41.667 0.00 0.00 0.00 4.70
2724 2814 4.980339 AATTCCAGGCTTGATTGGTTTT 57.020 36.364 0.00 0.00 35.89 2.43
2783 2873 8.519799 TCAGTACAGACAATCACATACATAGA 57.480 34.615 0.00 0.00 0.00 1.98
2802 2892 7.978982 ACAATCTCATGCATAAGTTTCAGTAC 58.021 34.615 0.00 0.00 0.00 2.73
2803 2893 9.665719 TTACAATCTCATGCATAAGTTTCAGTA 57.334 29.630 0.00 0.00 0.00 2.74
2844 2937 6.463995 AAAAACACTAAGCAACATTCAGGA 57.536 33.333 0.00 0.00 0.00 3.86
2871 2964 4.979335 TGTACATCCATTTGTGTCCAAGA 58.021 39.130 0.00 0.00 0.00 3.02
2966 3059 1.666888 GGAAAAATGCCTGACACGCAG 60.667 52.381 5.38 0.00 44.49 5.18
2969 3062 2.034558 ACAAGGAAAAATGCCTGACACG 59.965 45.455 0.00 0.00 35.50 4.49
3224 3329 3.428045 GGCATTTCTGGATCAAGGAAACG 60.428 47.826 0.00 0.00 32.84 3.60
3235 3340 2.041485 TCCTTCACATGGCATTTCTGGA 59.959 45.455 0.00 0.00 0.00 3.86
3307 3412 1.447314 GCAGCCAAGGAAATGCAGC 60.447 57.895 0.00 0.00 38.54 5.25
3444 3549 3.134574 TGCATACAGGGAGTTTTCGTT 57.865 42.857 0.00 0.00 0.00 3.85
3482 3670 1.740025 GACCCAAGCGGATCAGAAAAG 59.260 52.381 0.00 0.00 34.64 2.27
3625 3836 3.057104 CAGTGAAAATGATGAAGCCAGCA 60.057 43.478 0.00 0.00 43.43 4.41
3730 3941 3.896648 AAATGACACACACAACGGATC 57.103 42.857 0.00 0.00 0.00 3.36
3861 4072 5.365619 CCAGTTATGTTACCACTGTATCCC 58.634 45.833 5.95 0.00 36.90 3.85
3892 4103 0.727398 GGCGCCAATGTAGAACTGTC 59.273 55.000 24.80 0.00 0.00 3.51
4071 4282 2.927553 AGTTCAAAGATTCATGGCGC 57.072 45.000 0.00 0.00 0.00 6.53
4140 4353 4.370917 GCATTTTCTGTTCCAAGCTGAAA 58.629 39.130 0.00 0.00 33.89 2.69
4141 4354 3.243839 GGCATTTTCTGTTCCAAGCTGAA 60.244 43.478 0.00 0.00 0.00 3.02
4142 4355 2.297033 GGCATTTTCTGTTCCAAGCTGA 59.703 45.455 0.00 0.00 0.00 4.26
4143 4356 2.036217 TGGCATTTTCTGTTCCAAGCTG 59.964 45.455 0.00 0.00 0.00 4.24
4144 4357 2.318908 TGGCATTTTCTGTTCCAAGCT 58.681 42.857 0.00 0.00 0.00 3.74
4145 4358 2.818130 TGGCATTTTCTGTTCCAAGC 57.182 45.000 0.00 0.00 0.00 4.01
4146 4359 4.261578 ACATGGCATTTTCTGTTCCAAG 57.738 40.909 0.00 0.00 0.00 3.61
4147 4360 5.798125 TTACATGGCATTTTCTGTTCCAA 57.202 34.783 0.00 0.00 0.00 3.53
4148 4361 5.538053 TCTTTACATGGCATTTTCTGTTCCA 59.462 36.000 0.00 0.00 0.00 3.53
4149 4362 6.024552 TCTTTACATGGCATTTTCTGTTCC 57.975 37.500 0.00 0.00 0.00 3.62
4150 4363 6.922957 TGTTCTTTACATGGCATTTTCTGTTC 59.077 34.615 0.00 0.00 0.00 3.18
4151 4364 6.815089 TGTTCTTTACATGGCATTTTCTGTT 58.185 32.000 0.00 0.00 0.00 3.16
4152 4365 6.403866 TGTTCTTTACATGGCATTTTCTGT 57.596 33.333 0.00 0.00 0.00 3.41
4153 4366 6.366877 CCTTGTTCTTTACATGGCATTTTCTG 59.633 38.462 0.00 0.00 42.91 3.02
4154 4367 6.267471 TCCTTGTTCTTTACATGGCATTTTCT 59.733 34.615 0.00 0.00 46.56 2.52
4155 4368 6.366061 GTCCTTGTTCTTTACATGGCATTTTC 59.634 38.462 0.00 0.00 46.56 2.29
4156 4369 6.183360 TGTCCTTGTTCTTTACATGGCATTTT 60.183 34.615 0.00 0.00 46.56 1.82
4157 4370 5.304101 TGTCCTTGTTCTTTACATGGCATTT 59.696 36.000 0.00 0.00 46.56 2.32
4158 4371 4.832266 TGTCCTTGTTCTTTACATGGCATT 59.168 37.500 0.00 0.00 46.56 3.56
4159 4372 4.218417 GTGTCCTTGTTCTTTACATGGCAT 59.782 41.667 0.00 0.00 46.56 4.40
4160 4373 3.568007 GTGTCCTTGTTCTTTACATGGCA 59.432 43.478 0.00 0.00 46.56 4.92
4161 4374 3.364964 CGTGTCCTTGTTCTTTACATGGC 60.365 47.826 0.00 0.00 46.56 4.40
4163 4376 4.152402 CCTCGTGTCCTTGTTCTTTACATG 59.848 45.833 0.00 0.00 36.44 3.21
4164 4377 4.039973 TCCTCGTGTCCTTGTTCTTTACAT 59.960 41.667 0.00 0.00 36.44 2.29
4165 4378 3.385433 TCCTCGTGTCCTTGTTCTTTACA 59.615 43.478 0.00 0.00 34.12 2.41
4166 4379 3.986277 TCCTCGTGTCCTTGTTCTTTAC 58.014 45.455 0.00 0.00 0.00 2.01
4167 4380 4.100498 ACTTCCTCGTGTCCTTGTTCTTTA 59.900 41.667 0.00 0.00 0.00 1.85
4168 4381 3.118371 ACTTCCTCGTGTCCTTGTTCTTT 60.118 43.478 0.00 0.00 0.00 2.52
4169 4382 2.434702 ACTTCCTCGTGTCCTTGTTCTT 59.565 45.455 0.00 0.00 0.00 2.52
4170 4383 2.040178 ACTTCCTCGTGTCCTTGTTCT 58.960 47.619 0.00 0.00 0.00 3.01
4171 4384 2.528041 ACTTCCTCGTGTCCTTGTTC 57.472 50.000 0.00 0.00 0.00 3.18
4172 4385 2.484947 GGAACTTCCTCGTGTCCTTGTT 60.485 50.000 0.00 0.00 32.53 2.83
4173 4386 1.070289 GGAACTTCCTCGTGTCCTTGT 59.930 52.381 0.00 0.00 32.53 3.16
4174 4387 1.344763 AGGAACTTCCTCGTGTCCTTG 59.655 52.381 4.29 0.00 45.66 3.61
4175 4388 1.718280 AGGAACTTCCTCGTGTCCTT 58.282 50.000 4.29 0.00 45.66 3.36
4176 4389 2.225066 ACTAGGAACTTCCTCGTGTCCT 60.225 50.000 13.99 3.14 45.66 3.85
4177 4390 2.094649 CACTAGGAACTTCCTCGTGTCC 60.095 54.545 24.86 5.44 45.66 4.02
4178 4391 3.219052 CACTAGGAACTTCCTCGTGTC 57.781 52.381 24.86 0.00 45.66 3.67
4181 4394 1.819903 GCTCACTAGGAACTTCCTCGT 59.180 52.381 13.99 11.16 45.66 4.18
4182 4395 1.135333 GGCTCACTAGGAACTTCCTCG 59.865 57.143 13.99 10.50 45.66 4.63
4183 4396 1.483004 GGGCTCACTAGGAACTTCCTC 59.517 57.143 13.99 0.00 45.66 3.71
4185 4398 1.276622 TGGGCTCACTAGGAACTTCC 58.723 55.000 0.00 0.00 41.75 3.46
4186 4399 4.965200 ATATGGGCTCACTAGGAACTTC 57.035 45.455 0.00 0.00 41.75 3.01
4187 4400 5.398012 GGAAATATGGGCTCACTAGGAACTT 60.398 44.000 0.00 0.00 41.75 2.66
4188 4401 4.103311 GGAAATATGGGCTCACTAGGAACT 59.897 45.833 0.00 0.00 46.37 3.01
4189 4402 4.103311 AGGAAATATGGGCTCACTAGGAAC 59.897 45.833 0.00 0.00 0.00 3.62
4190 4403 4.307259 AGGAAATATGGGCTCACTAGGAA 58.693 43.478 0.00 0.00 0.00 3.36
4191 4404 3.904339 GAGGAAATATGGGCTCACTAGGA 59.096 47.826 0.00 0.00 0.00 2.94
4192 4405 3.906846 AGAGGAAATATGGGCTCACTAGG 59.093 47.826 0.00 0.00 0.00 3.02
4193 4406 4.346418 ACAGAGGAAATATGGGCTCACTAG 59.654 45.833 0.00 0.00 0.00 2.57
4194 4407 4.298626 ACAGAGGAAATATGGGCTCACTA 58.701 43.478 0.00 0.00 0.00 2.74
4195 4408 3.118531 ACAGAGGAAATATGGGCTCACT 58.881 45.455 0.00 0.00 0.00 3.41
4196 4409 3.567478 ACAGAGGAAATATGGGCTCAC 57.433 47.619 0.00 0.00 0.00 3.51
4197 4410 3.071602 GCTACAGAGGAAATATGGGCTCA 59.928 47.826 0.00 0.00 0.00 4.26
4198 4411 3.326297 AGCTACAGAGGAAATATGGGCTC 59.674 47.826 0.00 0.00 31.03 4.70
4199 4412 3.072184 CAGCTACAGAGGAAATATGGGCT 59.928 47.826 0.00 0.00 34.98 5.19
4200 4413 3.406764 CAGCTACAGAGGAAATATGGGC 58.593 50.000 0.00 0.00 0.00 5.36
4201 4414 3.392616 ACCAGCTACAGAGGAAATATGGG 59.607 47.826 0.00 0.00 0.00 4.00
4202 4415 4.696479 ACCAGCTACAGAGGAAATATGG 57.304 45.455 0.00 0.00 0.00 2.74
4203 4416 5.221521 TGCTACCAGCTACAGAGGAAATATG 60.222 44.000 0.00 0.00 42.97 1.78
4204 4417 4.901849 TGCTACCAGCTACAGAGGAAATAT 59.098 41.667 0.00 0.00 42.97 1.28
4205 4418 4.286707 TGCTACCAGCTACAGAGGAAATA 58.713 43.478 0.00 0.00 42.97 1.40
4206 4419 3.107601 TGCTACCAGCTACAGAGGAAAT 58.892 45.455 0.00 0.00 42.97 2.17
4207 4420 2.497675 CTGCTACCAGCTACAGAGGAAA 59.502 50.000 0.00 0.00 42.97 3.13
4208 4421 2.103373 CTGCTACCAGCTACAGAGGAA 58.897 52.381 0.00 0.00 42.97 3.36
4209 4422 1.285078 TCTGCTACCAGCTACAGAGGA 59.715 52.381 0.00 0.00 42.97 3.71
4210 4423 1.769026 TCTGCTACCAGCTACAGAGG 58.231 55.000 0.00 0.00 42.97 3.69
4211 4424 2.159170 GGTTCTGCTACCAGCTACAGAG 60.159 54.545 0.00 0.00 42.97 3.35
4212 4425 1.825474 GGTTCTGCTACCAGCTACAGA 59.175 52.381 0.00 0.00 42.97 3.41
4213 4426 1.827969 AGGTTCTGCTACCAGCTACAG 59.172 52.381 0.00 0.00 42.97 2.74
4214 4427 1.550524 CAGGTTCTGCTACCAGCTACA 59.449 52.381 0.00 0.00 42.97 2.74
4215 4428 1.550976 ACAGGTTCTGCTACCAGCTAC 59.449 52.381 0.00 0.00 42.97 3.58
4216 4429 1.938585 ACAGGTTCTGCTACCAGCTA 58.061 50.000 0.00 0.00 42.97 3.32
4217 4430 1.938585 TACAGGTTCTGCTACCAGCT 58.061 50.000 0.00 0.00 42.97 4.24
4218 4431 2.939103 CAATACAGGTTCTGCTACCAGC 59.061 50.000 6.11 0.00 40.82 4.85
4219 4432 4.207891 ACAATACAGGTTCTGCTACCAG 57.792 45.455 6.11 1.20 40.82 4.00
4220 4433 5.950544 ATACAATACAGGTTCTGCTACCA 57.049 39.130 6.11 0.00 40.82 3.25
4221 4434 7.723324 TCTAATACAATACAGGTTCTGCTACC 58.277 38.462 0.00 0.00 38.53 3.18
4222 4435 8.414778 ACTCTAATACAATACAGGTTCTGCTAC 58.585 37.037 0.00 0.00 34.37 3.58
4223 4436 8.534954 ACTCTAATACAATACAGGTTCTGCTA 57.465 34.615 0.00 0.00 34.37 3.49
4224 4437 7.425224 ACTCTAATACAATACAGGTTCTGCT 57.575 36.000 0.00 0.00 34.37 4.24
4225 4438 7.764443 TCAACTCTAATACAATACAGGTTCTGC 59.236 37.037 0.00 0.00 34.37 4.26
4226 4439 9.307121 CTCAACTCTAATACAATACAGGTTCTG 57.693 37.037 0.00 0.00 37.52 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.