Multiple sequence alignment - TraesCS1B01G419900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G419900 chr1B 100.000 4625 0 0 1 4625 643115747 643111123 0.000000e+00 8541
1 TraesCS1B01G419900 chr1B 93.555 512 31 2 4116 4625 398895951 398895440 0.000000e+00 761
2 TraesCS1B01G419900 chr1B 75.464 754 136 32 1025 1753 580523564 580524293 5.770000e-84 322
3 TraesCS1B01G419900 chr1A 89.359 1795 174 9 1772 3564 86615660 86613881 0.000000e+00 2241
4 TraesCS1B01G419900 chr1A 94.111 832 49 0 123 954 558539914 558539083 0.000000e+00 1266
5 TraesCS1B01G419900 chr1A 92.736 826 47 2 956 1769 558539001 558538177 0.000000e+00 1181
6 TraesCS1B01G419900 chr1A 89.336 497 48 4 1772 2266 567452234 567451741 1.830000e-173 619
7 TraesCS1B01G419900 chr1A 77.146 827 145 34 956 1753 526750162 526750973 1.530000e-119 440
8 TraesCS1B01G419900 chr1A 87.538 329 27 3 3560 3887 558538189 558537874 7.310000e-98 368
9 TraesCS1B01G419900 chr3D 86.293 1802 218 21 1769 3564 298342 300120 0.000000e+00 1932
10 TraesCS1B01G419900 chr3D 79.203 928 187 6 2640 3564 10718981 10718057 1.400000e-179 640
11 TraesCS1B01G419900 chr3D 96.667 120 4 0 1 120 83388693 83388812 2.820000e-47 200
12 TraesCS1B01G419900 chr5B 96.606 766 19 2 1777 2542 710801763 710801005 0.000000e+00 1264
13 TraesCS1B01G419900 chr5B 95.902 122 4 1 1 122 141455593 141455473 3.650000e-46 196
14 TraesCS1B01G419900 chr2A 79.989 1754 315 27 1819 3564 767303614 767305339 0.000000e+00 1262
15 TraesCS1B01G419900 chr2A 95.161 124 4 2 5 126 47669902 47670025 1.310000e-45 195
16 TraesCS1B01G419900 chr1D 91.052 827 51 5 956 1769 466386063 466385247 0.000000e+00 1096
17 TraesCS1B01G419900 chr1D 93.421 532 32 3 4096 4625 21645736 21645206 0.000000e+00 785
18 TraesCS1B01G419900 chr1D 88.110 471 56 0 484 954 466386615 466386145 1.120000e-155 560
19 TraesCS1B01G419900 chr1D 95.935 123 4 1 1 122 303308002 303308124 1.020000e-46 198
20 TraesCS1B01G419900 chr1D 95.868 121 4 1 4 123 196110508 196110388 1.310000e-45 195
21 TraesCS1B01G419900 chr1D 85.000 120 15 3 3560 3677 466385259 466385141 8.130000e-23 119
22 TraesCS1B01G419900 chr7D 94.716 511 25 2 4116 4625 534333383 534332874 0.000000e+00 793
23 TraesCS1B01G419900 chr7D 94.129 511 27 2 4117 4625 510345809 510346318 0.000000e+00 774
24 TraesCS1B01G419900 chr2D 94.716 511 26 1 4116 4625 92883661 92884171 0.000000e+00 793
25 TraesCS1B01G419900 chr2D 93.945 512 28 2 4116 4625 69151916 69152426 0.000000e+00 771
26 TraesCS1B01G419900 chr2D 96.667 120 2 2 5 122 647842492 647842373 1.020000e-46 198
27 TraesCS1B01G419900 chr2D 95.238 126 3 3 5 127 51630816 51630691 3.650000e-46 196
28 TraesCS1B01G419900 chr3B 94.141 512 28 2 4116 4625 661164653 661165164 0.000000e+00 778
29 TraesCS1B01G419900 chr3B 77.681 345 75 2 611 954 22438199 22438542 4.690000e-50 209
30 TraesCS1B01G419900 chr5D 93.542 511 31 2 4116 4625 101757455 101756946 0.000000e+00 760
31 TraesCS1B01G419900 chr4D 93.023 516 35 1 4107 4622 391472827 391473341 0.000000e+00 752
32 TraesCS1B01G419900 chr6D 84.848 561 65 6 1202 1746 32907260 32907816 8.750000e-152 547
33 TraesCS1B01G419900 chr6D 94.488 127 6 1 1 126 27532699 27532825 1.310000e-45 195
34 TraesCS1B01G419900 chr6D 94.309 123 7 0 1 123 420532672 420532794 6.110000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G419900 chr1B 643111123 643115747 4624 True 8541.000000 8541 100.000000 1 4625 1 chr1B.!!$R2 4624
1 TraesCS1B01G419900 chr1B 398895440 398895951 511 True 761.000000 761 93.555000 4116 4625 1 chr1B.!!$R1 509
2 TraesCS1B01G419900 chr1B 580523564 580524293 729 False 322.000000 322 75.464000 1025 1753 1 chr1B.!!$F1 728
3 TraesCS1B01G419900 chr1A 86613881 86615660 1779 True 2241.000000 2241 89.359000 1772 3564 1 chr1A.!!$R1 1792
4 TraesCS1B01G419900 chr1A 558537874 558539914 2040 True 938.333333 1266 91.461667 123 3887 3 chr1A.!!$R3 3764
5 TraesCS1B01G419900 chr1A 526750162 526750973 811 False 440.000000 440 77.146000 956 1753 1 chr1A.!!$F1 797
6 TraesCS1B01G419900 chr3D 298342 300120 1778 False 1932.000000 1932 86.293000 1769 3564 1 chr3D.!!$F1 1795
7 TraesCS1B01G419900 chr3D 10718057 10718981 924 True 640.000000 640 79.203000 2640 3564 1 chr3D.!!$R1 924
8 TraesCS1B01G419900 chr5B 710801005 710801763 758 True 1264.000000 1264 96.606000 1777 2542 1 chr5B.!!$R2 765
9 TraesCS1B01G419900 chr2A 767303614 767305339 1725 False 1262.000000 1262 79.989000 1819 3564 1 chr2A.!!$F2 1745
10 TraesCS1B01G419900 chr1D 21645206 21645736 530 True 785.000000 785 93.421000 4096 4625 1 chr1D.!!$R1 529
11 TraesCS1B01G419900 chr1D 466385141 466386615 1474 True 591.666667 1096 88.054000 484 3677 3 chr1D.!!$R3 3193
12 TraesCS1B01G419900 chr7D 534332874 534333383 509 True 793.000000 793 94.716000 4116 4625 1 chr7D.!!$R1 509
13 TraesCS1B01G419900 chr7D 510345809 510346318 509 False 774.000000 774 94.129000 4117 4625 1 chr7D.!!$F1 508
14 TraesCS1B01G419900 chr2D 92883661 92884171 510 False 793.000000 793 94.716000 4116 4625 1 chr2D.!!$F2 509
15 TraesCS1B01G419900 chr2D 69151916 69152426 510 False 771.000000 771 93.945000 4116 4625 1 chr2D.!!$F1 509
16 TraesCS1B01G419900 chr3B 661164653 661165164 511 False 778.000000 778 94.141000 4116 4625 1 chr3B.!!$F2 509
17 TraesCS1B01G419900 chr5D 101756946 101757455 509 True 760.000000 760 93.542000 4116 4625 1 chr5D.!!$R1 509
18 TraesCS1B01G419900 chr4D 391472827 391473341 514 False 752.000000 752 93.023000 4107 4622 1 chr4D.!!$F1 515
19 TraesCS1B01G419900 chr6D 32907260 32907816 556 False 547.000000 547 84.848000 1202 1746 1 chr6D.!!$F2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 955 1.003866 TCGATGTGAGATACGCAGACG 60.004 52.381 0.0 0.0 42.42 4.18 F
1760 1864 0.179092 GCCATGAAATTGGAGGCAGC 60.179 55.000 0.0 0.0 44.59 5.25 F
1765 1869 0.323725 GAAATTGGAGGCAGCCAGGA 60.324 55.000 15.8 0.0 39.52 3.86 F
1766 1870 0.613012 AAATTGGAGGCAGCCAGGAC 60.613 55.000 15.8 0.6 39.52 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2890 3006 0.178973 TCACTCCAGAGTTCCGTCCA 60.179 55.000 0.00 0.0 40.20 4.02 R
2933 3049 1.004440 GGCTCAGAACGACTGCCTT 60.004 57.895 8.88 0.0 45.38 4.35 R
3377 3494 1.066858 GGGCTCGTCATCAACTTCTCA 60.067 52.381 0.00 0.0 0.00 3.27 R
3763 3883 1.276421 AGGCTGCGTGTGAACTCTTAT 59.724 47.619 0.00 0.0 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.895854 CAAATTTGGCCCGAGCAG 57.104 55.556 10.49 0.00 42.56 4.24
18 19 1.216178 CAAATTTGGCCCGAGCAGG 59.784 57.895 10.49 0.00 42.56 4.85
25 26 3.361977 GCCCGAGCAGGCGAAAAA 61.362 61.111 0.00 0.00 44.57 1.94
26 27 2.561373 CCCGAGCAGGCGAAAAAC 59.439 61.111 0.00 0.00 39.21 2.43
27 28 2.173382 CCGAGCAGGCGAAAAACG 59.827 61.111 0.00 0.00 45.66 3.60
28 29 2.173382 CGAGCAGGCGAAAAACGG 59.827 61.111 0.00 0.00 42.83 4.44
29 30 2.561373 GAGCAGGCGAAAAACGGG 59.439 61.111 0.00 0.00 42.83 5.28
30 31 3.610791 GAGCAGGCGAAAAACGGGC 62.611 63.158 0.00 0.00 42.83 6.13
31 32 3.670377 GCAGGCGAAAAACGGGCT 61.670 61.111 0.00 0.00 42.83 5.19
32 33 3.039134 CAGGCGAAAAACGGGCTT 58.961 55.556 0.00 0.00 42.83 4.35
33 34 1.081442 CAGGCGAAAAACGGGCTTC 60.081 57.895 0.00 0.00 42.83 3.86
34 35 1.228154 AGGCGAAAAACGGGCTTCT 60.228 52.632 0.00 0.00 42.83 2.85
35 36 1.081442 GGCGAAAAACGGGCTTCTG 60.081 57.895 0.00 0.00 42.83 3.02
36 37 1.081442 GCGAAAAACGGGCTTCTGG 60.081 57.895 0.00 0.00 42.83 3.86
37 38 1.579429 CGAAAAACGGGCTTCTGGG 59.421 57.895 0.00 0.00 38.46 4.45
38 39 1.862602 CGAAAAACGGGCTTCTGGGG 61.863 60.000 0.00 0.00 38.46 4.96
39 40 1.532604 GAAAAACGGGCTTCTGGGGG 61.533 60.000 0.00 0.00 0.00 5.40
56 57 3.292159 GGCGACTGGGCCGTTTTT 61.292 61.111 0.00 0.00 44.40 1.94
86 87 2.642700 CGACAAAAACGCCTGGGG 59.357 61.111 9.49 9.49 0.00 4.96
87 88 1.894756 CGACAAAAACGCCTGGGGA 60.895 57.895 18.53 0.00 0.00 4.81
88 89 1.852067 CGACAAAAACGCCTGGGGAG 61.852 60.000 18.53 4.37 0.00 4.30
89 90 1.524008 GACAAAAACGCCTGGGGAGG 61.524 60.000 18.53 4.35 0.00 4.30
90 91 2.117423 AAAAACGCCTGGGGAGGG 59.883 61.111 18.53 0.00 0.00 4.30
91 92 4.678743 AAAACGCCTGGGGAGGGC 62.679 66.667 18.53 0.00 45.57 5.19
97 98 4.052518 CCTGGGGAGGGCCTGTTG 62.053 72.222 12.95 0.00 0.00 3.33
98 99 4.052518 CTGGGGAGGGCCTGTTGG 62.053 72.222 12.95 0.00 0.00 3.77
119 120 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
120 121 2.849964 CGCGGCTGGAGATGCTCTA 61.850 63.158 0.00 0.00 0.00 2.43
121 122 1.443407 GCGGCTGGAGATGCTCTAA 59.557 57.895 0.00 0.00 0.00 2.10
130 131 3.181468 TGGAGATGCTCTAACATGCTCAG 60.181 47.826 0.00 0.00 31.44 3.35
133 134 4.440880 AGATGCTCTAACATGCTCAGAAC 58.559 43.478 0.00 0.00 0.00 3.01
141 142 2.560504 ACATGCTCAGAACGTTGAACA 58.439 42.857 5.00 0.00 0.00 3.18
177 178 5.476950 TCTACAGGGTAACATTCCTAGGA 57.523 43.478 7.62 7.62 39.74 2.94
230 231 9.979897 ACCATATGTGCATTATCCTACAATAAT 57.020 29.630 1.24 0.00 33.14 1.28
321 322 4.344968 ACAAACTTTCTGGGGAAATTCCTG 59.655 41.667 12.28 0.75 40.19 3.86
354 355 1.622312 AGTGTCAAGAGCTGCAGATCA 59.378 47.619 31.80 10.60 31.88 2.92
358 359 1.202498 TCAAGAGCTGCAGATCATCCG 60.202 52.381 31.80 17.15 31.88 4.18
383 384 4.104086 TGGACCAGAATATTCTCACAGGT 58.896 43.478 19.88 19.88 34.74 4.00
447 448 6.265577 GTGCTCAACTTTTCACATAACAGTT 58.734 36.000 0.00 0.00 0.00 3.16
452 453 7.254852 TCAACTTTTCACATAACAGTTTGTCC 58.745 34.615 0.00 0.00 0.00 4.02
464 465 1.633432 AGTTTGTCCGGATCCATTCCA 59.367 47.619 7.81 0.00 45.78 3.53
471 472 1.949525 CCGGATCCATTCCAACATCAC 59.050 52.381 13.41 0.00 45.78 3.06
504 505 5.592054 TGAAATATCTGAACCAGCTAGACG 58.408 41.667 0.00 0.00 0.00 4.18
521 522 6.996879 AGCTAGACGTCTCTTACAACCATATA 59.003 38.462 23.89 0.00 0.00 0.86
596 597 1.571955 ATGGGAATTGGGGACTTTGC 58.428 50.000 0.00 0.00 0.00 3.68
616 617 2.935238 GCGGTGGAGCAGTAAATCTTCA 60.935 50.000 0.00 0.00 37.05 3.02
629 630 6.319658 CAGTAAATCTTCATATGCCCACTTGT 59.680 38.462 0.00 0.00 0.00 3.16
633 634 5.692115 TCTTCATATGCCCACTTGTTCTA 57.308 39.130 0.00 0.00 0.00 2.10
638 639 6.759272 TCATATGCCCACTTGTTCTACTATC 58.241 40.000 0.00 0.00 0.00 2.08
641 642 3.451178 TGCCCACTTGTTCTACTATCTCC 59.549 47.826 0.00 0.00 0.00 3.71
652 653 7.182760 TGTTCTACTATCTCCCAGAGAAAAGA 58.817 38.462 11.96 5.08 42.27 2.52
655 656 8.068892 TCTACTATCTCCCAGAGAAAAGAAAC 57.931 38.462 11.96 0.00 42.27 2.78
699 700 2.122783 TATCCCTTTGGTTGGCTTCG 57.877 50.000 0.00 0.00 0.00 3.79
773 774 7.293745 CAAGAAGAACATACTTACTGTTGCTG 58.706 38.462 0.00 0.00 36.98 4.41
807 808 5.903810 AGCATTTTCCTAGAGTTACCTACG 58.096 41.667 0.00 0.00 0.00 3.51
857 858 2.123589 TCTGAGTCAAACCTGGTTGGA 58.876 47.619 13.79 13.22 39.71 3.53
869 870 2.507471 CCTGGTTGGAAGAGGAAGCTAT 59.493 50.000 0.00 0.00 38.35 2.97
891 892 7.762159 GCTATGGTTCAGTATATAGAGGAAAGC 59.238 40.741 0.00 0.00 0.00 3.51
954 955 1.003866 TCGATGTGAGATACGCAGACG 60.004 52.381 0.00 0.00 42.42 4.18
961 1042 4.083802 TGTGAGATACGCAGACGATAGATG 60.084 45.833 0.00 0.00 43.93 2.90
1023 1104 2.044888 CAAACGGGAATTTGGACACG 57.955 50.000 0.00 0.00 36.17 4.49
1233 1314 0.749649 TTGGCATTGCAAACCTCGTT 59.250 45.000 19.34 0.00 0.00 3.85
1239 1320 3.223157 CATTGCAAACCTCGTTCGTAAC 58.777 45.455 1.71 0.00 0.00 2.50
1326 1422 6.951971 AGGATATATTGCTCCAGGTATTCAC 58.048 40.000 0.00 0.00 33.75 3.18
1366 1462 5.129634 TGTGTGAGGCTTAATTGTCTGAAA 58.870 37.500 0.00 0.00 0.00 2.69
1370 1466 8.296713 GTGTGAGGCTTAATTGTCTGAAAATTA 58.703 33.333 8.60 8.60 0.00 1.40
1437 1540 4.890158 TTCAGAGTATGCTCAAACTGGA 57.110 40.909 13.64 0.00 44.00 3.86
1541 1645 7.424803 CCTATGTTTGACAATGAACTCAACAA 58.575 34.615 0.00 0.00 0.00 2.83
1559 1663 6.272318 TCAACAATGTCAATTTTGTGGAGAC 58.728 36.000 0.00 0.00 36.26 3.36
1610 1714 5.303845 TCATCGATGATCATCTCCAAGAAGT 59.696 40.000 28.48 6.10 35.72 3.01
1625 1729 2.508526 AGAAGTGTGCAAGGGATTCAC 58.491 47.619 0.00 0.00 0.00 3.18
1630 1734 3.264193 AGTGTGCAAGGGATTCACTCATA 59.736 43.478 0.00 0.00 34.87 2.15
1632 1736 2.609459 GTGCAAGGGATTCACTCATACG 59.391 50.000 0.00 0.00 0.00 3.06
1637 1741 3.366396 AGGGATTCACTCATACGACAGT 58.634 45.455 0.00 0.00 0.00 3.55
1653 1757 3.674997 GACAGTGGAAGCAGGAAACATA 58.325 45.455 0.00 0.00 0.00 2.29
1665 1769 6.763355 AGCAGGAAACATAGTATATCAGTGG 58.237 40.000 0.00 0.00 0.00 4.00
1672 1776 5.611374 ACATAGTATATCAGTGGTTGGTGC 58.389 41.667 0.00 0.00 0.00 5.01
1695 1799 2.548707 CCTTGTGCAAGTAGCTCTGTCA 60.549 50.000 10.56 0.00 45.94 3.58
1701 1805 2.691927 CAAGTAGCTCTGTCATGCACA 58.308 47.619 0.00 0.00 0.00 4.57
1753 1857 5.188434 TGAGAGAAGTAGCCATGAAATTGG 58.812 41.667 0.00 0.00 39.94 3.16
1756 1860 4.530875 AGAAGTAGCCATGAAATTGGAGG 58.469 43.478 0.00 0.00 39.25 4.30
1757 1861 2.659428 AGTAGCCATGAAATTGGAGGC 58.341 47.619 0.00 0.00 45.54 4.70
1760 1864 0.179092 GCCATGAAATTGGAGGCAGC 60.179 55.000 0.00 0.00 44.59 5.25
1761 1865 0.462789 CCATGAAATTGGAGGCAGCC 59.537 55.000 1.84 1.84 39.25 4.85
1762 1866 1.187974 CATGAAATTGGAGGCAGCCA 58.812 50.000 15.80 0.00 35.78 4.75
1763 1867 1.136305 CATGAAATTGGAGGCAGCCAG 59.864 52.381 15.80 0.00 39.52 4.85
1764 1868 0.612732 TGAAATTGGAGGCAGCCAGG 60.613 55.000 15.80 0.00 39.52 4.45
1765 1869 0.323725 GAAATTGGAGGCAGCCAGGA 60.324 55.000 15.80 0.00 39.52 3.86
1766 1870 0.613012 AAATTGGAGGCAGCCAGGAC 60.613 55.000 15.80 0.60 39.52 3.85
1767 1871 1.792757 AATTGGAGGCAGCCAGGACA 61.793 55.000 15.80 3.59 39.52 4.02
1768 1872 1.578215 ATTGGAGGCAGCCAGGACAT 61.578 55.000 15.80 0.00 39.52 3.06
1769 1873 1.792757 TTGGAGGCAGCCAGGACATT 61.793 55.000 15.80 0.00 39.52 2.71
1770 1874 1.000396 GGAGGCAGCCAGGACATTT 60.000 57.895 15.80 0.00 0.00 2.32
1844 1951 4.700213 CCTGAATATATTGCGTAAAGGGGG 59.300 45.833 1.78 0.00 0.00 5.40
1968 2083 0.900647 AGGACAGCTAGCCAGACGTT 60.901 55.000 12.13 0.00 0.00 3.99
1984 2099 1.000955 ACGTTGATATGGGAGCGATCC 59.999 52.381 12.38 12.38 0.00 3.36
2184 2299 4.394712 GTGCAGGGTCTCCACCGG 62.395 72.222 0.00 0.00 44.91 5.28
2577 2692 1.153269 TGAACAGCAACGCACTCCA 60.153 52.632 0.00 0.00 0.00 3.86
2611 2726 2.027073 TTAGCCGCGACACAAGCAG 61.027 57.895 8.23 0.00 34.19 4.24
2624 2739 2.529744 AAGCAGGGACCTCACACCC 61.530 63.158 0.00 0.00 45.88 4.61
2771 2887 1.591594 CACCTCAACACGCGTGAGT 60.592 57.895 42.94 27.45 0.00 3.41
2890 3006 2.551413 AAACCCAGCAGGCCCATCT 61.551 57.895 0.00 0.00 40.58 2.90
2927 3043 3.007398 AGTGAAGACGATGGAGAAGCTTT 59.993 43.478 0.00 0.00 0.00 3.51
2933 3049 3.366396 ACGATGGAGAAGCTTTAGGAGA 58.634 45.455 0.00 0.00 0.00 3.71
2958 3074 1.306141 TCGTTCTGAGCCCCCAGAT 60.306 57.895 0.00 0.00 42.18 2.90
2966 3082 4.467084 GCCCCCAGATCGCGAACA 62.467 66.667 15.24 0.00 0.00 3.18
2969 3085 2.511600 CCCAGATCGCGAACACCC 60.512 66.667 15.24 0.00 0.00 4.61
2973 3089 2.264794 GATCGCGAACACCCAGGT 59.735 61.111 15.24 0.00 0.00 4.00
3154 3271 0.667792 GAGTCCAGGACTGCGTTGAC 60.668 60.000 27.94 6.65 43.53 3.18
3377 3494 0.031616 TGGGGACAAGGGTGCTTTTT 60.032 50.000 0.00 0.00 37.44 1.94
3553 3671 2.104331 CCCGTCCGACCGAATCAG 59.896 66.667 0.00 0.00 0.00 2.90
3665 3784 4.152223 CACTTGTCACGATTAACTCATGCA 59.848 41.667 0.00 0.00 0.00 3.96
3721 3840 8.181487 TCGAGTCGGTATTTTTCAATAAAGAG 57.819 34.615 13.54 0.00 0.00 2.85
3752 3872 1.000163 ACTACTAATGCCGCATCGAGG 60.000 52.381 6.27 0.00 0.00 4.63
3762 3882 2.171725 GCATCGAGGCGGTACAACC 61.172 63.158 6.20 0.00 34.05 3.77
3763 3883 1.216977 CATCGAGGCGGTACAACCA 59.783 57.895 6.22 0.00 38.47 3.67
3770 3890 2.167900 GAGGCGGTACAACCATAAGAGT 59.832 50.000 6.22 0.00 38.47 3.24
3777 3897 4.387862 GGTACAACCATAAGAGTTCACACG 59.612 45.833 0.00 0.00 38.42 4.49
3792 3912 4.137116 TCACACGCAGCCTCTATAAATT 57.863 40.909 0.00 0.00 0.00 1.82
3800 3920 4.734695 GCAGCCTCTATAAATTGTGTTGGC 60.735 45.833 0.00 0.00 38.24 4.52
3807 3927 8.849168 CCTCTATAAATTGTGTTGGCATGAATA 58.151 33.333 0.00 0.00 0.00 1.75
3814 3934 9.941325 AAATTGTGTTGGCATGAATAATTAAGA 57.059 25.926 0.00 0.00 0.00 2.10
3816 3936 8.929827 TTGTGTTGGCATGAATAATTAAGATG 57.070 30.769 0.00 0.00 0.00 2.90
3817 3937 8.291191 TGTGTTGGCATGAATAATTAAGATGA 57.709 30.769 0.00 0.00 0.00 2.92
3818 3938 8.916062 TGTGTTGGCATGAATAATTAAGATGAT 58.084 29.630 0.00 0.00 0.00 2.45
3849 3969 1.392589 AGCCATGAGTAAAATGCGGG 58.607 50.000 0.00 0.00 0.00 6.13
3851 3971 1.392589 CCATGAGTAAAATGCGGGCT 58.607 50.000 0.00 0.00 0.00 5.19
3858 3978 2.625790 AGTAAAATGCGGGCTTTGACAA 59.374 40.909 0.00 0.00 0.00 3.18
3861 3981 1.864565 AATGCGGGCTTTGACAAAAC 58.135 45.000 1.62 0.00 0.00 2.43
3863 3983 0.102120 TGCGGGCTTTGACAAAACAG 59.898 50.000 1.62 0.78 0.00 3.16
3887 4007 3.399330 TGCTGTTAGGACAACTAGCAAC 58.601 45.455 0.00 0.00 41.51 4.17
3888 4008 2.412089 GCTGTTAGGACAACTAGCAACG 59.588 50.000 0.00 0.00 41.51 4.10
3889 4009 2.409975 TGTTAGGACAACTAGCAACGC 58.590 47.619 0.00 0.00 39.54 4.84
3890 4010 2.036733 TGTTAGGACAACTAGCAACGCT 59.963 45.455 0.00 0.00 39.54 5.07
3891 4011 2.649331 TAGGACAACTAGCAACGCTC 57.351 50.000 0.00 0.00 40.44 5.03
3892 4012 0.388649 AGGACAACTAGCAACGCTCG 60.389 55.000 0.00 0.00 40.44 5.03
3893 4013 1.416434 GACAACTAGCAACGCTCGC 59.584 57.895 0.00 0.00 40.44 5.03
3894 4014 2.267227 GACAACTAGCAACGCTCGCG 62.267 60.000 10.06 10.06 40.44 5.87
3895 4015 3.479269 AACTAGCAACGCTCGCGC 61.479 61.111 11.65 0.00 44.19 6.86
3896 4016 3.916392 AACTAGCAACGCTCGCGCT 62.916 57.895 11.65 9.05 44.19 5.92
3897 4017 3.906649 CTAGCAACGCTCGCGCTG 61.907 66.667 11.65 10.78 44.19 5.18
3915 4035 2.184322 CGCCACGCTGTCCATACT 59.816 61.111 0.00 0.00 0.00 2.12
3916 4036 1.447838 CGCCACGCTGTCCATACTT 60.448 57.895 0.00 0.00 0.00 2.24
3917 4037 1.421410 CGCCACGCTGTCCATACTTC 61.421 60.000 0.00 0.00 0.00 3.01
3918 4038 0.391130 GCCACGCTGTCCATACTTCA 60.391 55.000 0.00 0.00 0.00 3.02
3919 4039 1.645034 CCACGCTGTCCATACTTCAG 58.355 55.000 0.00 0.00 0.00 3.02
3920 4040 1.066858 CCACGCTGTCCATACTTCAGT 60.067 52.381 0.00 0.00 0.00 3.41
3921 4041 2.263077 CACGCTGTCCATACTTCAGTC 58.737 52.381 0.00 0.00 0.00 3.51
3922 4042 1.893137 ACGCTGTCCATACTTCAGTCA 59.107 47.619 0.00 0.00 0.00 3.41
3923 4043 2.094494 ACGCTGTCCATACTTCAGTCAG 60.094 50.000 0.00 0.00 0.00 3.51
3924 4044 2.275318 GCTGTCCATACTTCAGTCAGC 58.725 52.381 0.00 0.00 39.55 4.26
3925 4045 2.093764 GCTGTCCATACTTCAGTCAGCT 60.094 50.000 9.32 0.00 42.00 4.24
3926 4046 3.519579 CTGTCCATACTTCAGTCAGCTG 58.480 50.000 7.63 7.63 43.87 4.24
3927 4047 2.899900 TGTCCATACTTCAGTCAGCTGT 59.100 45.455 14.67 0.00 43.05 4.40
3928 4048 3.324846 TGTCCATACTTCAGTCAGCTGTT 59.675 43.478 14.67 0.08 43.05 3.16
3929 4049 3.681897 GTCCATACTTCAGTCAGCTGTTG 59.318 47.826 14.67 13.51 43.05 3.33
3930 4050 3.324846 TCCATACTTCAGTCAGCTGTTGT 59.675 43.478 14.67 7.31 43.05 3.32
3931 4051 3.681897 CCATACTTCAGTCAGCTGTTGTC 59.318 47.826 14.67 3.42 43.05 3.18
3932 4052 4.562347 CCATACTTCAGTCAGCTGTTGTCT 60.562 45.833 14.67 5.70 43.05 3.41
3933 4053 3.104843 ACTTCAGTCAGCTGTTGTCTC 57.895 47.619 14.67 0.00 43.05 3.36
3934 4054 2.697751 ACTTCAGTCAGCTGTTGTCTCT 59.302 45.455 14.67 1.52 43.05 3.10
3935 4055 3.133721 ACTTCAGTCAGCTGTTGTCTCTT 59.866 43.478 14.67 0.00 43.05 2.85
3936 4056 3.377346 TCAGTCAGCTGTTGTCTCTTC 57.623 47.619 14.67 0.00 43.05 2.87
3937 4057 2.695147 TCAGTCAGCTGTTGTCTCTTCA 59.305 45.455 14.67 0.00 43.05 3.02
3938 4058 2.799412 CAGTCAGCTGTTGTCTCTTCAC 59.201 50.000 14.67 0.00 37.92 3.18
3939 4059 2.432146 AGTCAGCTGTTGTCTCTTCACA 59.568 45.455 14.67 0.00 0.00 3.58
3940 4060 2.541762 GTCAGCTGTTGTCTCTTCACAC 59.458 50.000 14.67 0.00 0.00 3.82
3941 4061 2.432146 TCAGCTGTTGTCTCTTCACACT 59.568 45.455 14.67 0.00 0.00 3.55
3942 4062 3.118629 TCAGCTGTTGTCTCTTCACACTT 60.119 43.478 14.67 0.00 0.00 3.16
3943 4063 3.624861 CAGCTGTTGTCTCTTCACACTTT 59.375 43.478 5.25 0.00 0.00 2.66
3944 4064 3.873952 AGCTGTTGTCTCTTCACACTTTC 59.126 43.478 0.00 0.00 0.00 2.62
3945 4065 3.623060 GCTGTTGTCTCTTCACACTTTCA 59.377 43.478 0.00 0.00 0.00 2.69
3946 4066 4.094887 GCTGTTGTCTCTTCACACTTTCAA 59.905 41.667 0.00 0.00 0.00 2.69
3947 4067 5.220931 GCTGTTGTCTCTTCACACTTTCAAT 60.221 40.000 0.00 0.00 0.00 2.57
3948 4068 6.017934 GCTGTTGTCTCTTCACACTTTCAATA 60.018 38.462 0.00 0.00 0.00 1.90
3949 4069 7.482654 TGTTGTCTCTTCACACTTTCAATAG 57.517 36.000 0.00 0.00 0.00 1.73
3950 4070 7.047891 TGTTGTCTCTTCACACTTTCAATAGT 58.952 34.615 0.00 0.00 0.00 2.12
3951 4071 7.552687 TGTTGTCTCTTCACACTTTCAATAGTT 59.447 33.333 0.00 0.00 0.00 2.24
3952 4072 7.482654 TGTCTCTTCACACTTTCAATAGTTG 57.517 36.000 0.00 0.00 0.00 3.16
3953 4073 7.272244 TGTCTCTTCACACTTTCAATAGTTGA 58.728 34.615 0.00 0.00 38.04 3.18
3954 4074 7.439356 TGTCTCTTCACACTTTCAATAGTTGAG 59.561 37.037 0.00 0.00 41.38 3.02
3955 4075 7.653713 GTCTCTTCACACTTTCAATAGTTGAGA 59.346 37.037 0.00 0.00 41.38 3.27
3956 4076 7.869937 TCTCTTCACACTTTCAATAGTTGAGAG 59.130 37.037 8.24 8.24 44.81 3.20
3957 4077 6.931281 TCTTCACACTTTCAATAGTTGAGAGG 59.069 38.462 12.86 6.31 43.89 3.69
3958 4078 6.419484 TCACACTTTCAATAGTTGAGAGGA 57.581 37.500 12.86 1.31 43.89 3.71
3959 4079 7.009179 TCACACTTTCAATAGTTGAGAGGAT 57.991 36.000 12.86 0.87 43.89 3.24
3960 4080 6.875726 TCACACTTTCAATAGTTGAGAGGATG 59.124 38.462 12.86 10.45 43.89 3.51
3961 4081 5.645497 ACACTTTCAATAGTTGAGAGGATGC 59.355 40.000 12.86 0.00 43.89 3.91
3962 4082 5.879223 CACTTTCAATAGTTGAGAGGATGCT 59.121 40.000 12.86 0.00 43.89 3.79
3963 4083 7.044181 CACTTTCAATAGTTGAGAGGATGCTA 58.956 38.462 12.86 0.00 43.89 3.49
3964 4084 7.010923 CACTTTCAATAGTTGAGAGGATGCTAC 59.989 40.741 12.86 0.00 43.89 3.58
3965 4085 5.188327 TCAATAGTTGAGAGGATGCTACG 57.812 43.478 0.00 0.00 34.08 3.51
3966 4086 4.645136 TCAATAGTTGAGAGGATGCTACGT 59.355 41.667 0.00 0.00 34.08 3.57
3967 4087 5.826208 TCAATAGTTGAGAGGATGCTACGTA 59.174 40.000 0.00 0.00 34.08 3.57
3968 4088 5.692613 ATAGTTGAGAGGATGCTACGTAC 57.307 43.478 0.00 0.00 0.00 3.67
3969 4089 2.688958 AGTTGAGAGGATGCTACGTACC 59.311 50.000 0.00 0.00 0.00 3.34
3970 4090 1.306148 TGAGAGGATGCTACGTACCG 58.694 55.000 0.00 0.00 0.00 4.02
3971 4091 0.592148 GAGAGGATGCTACGTACCGG 59.408 60.000 0.00 0.00 0.00 5.28
3972 4092 0.106819 AGAGGATGCTACGTACCGGT 60.107 55.000 13.98 13.98 0.00 5.28
3973 4093 1.141657 AGAGGATGCTACGTACCGGTA 59.858 52.381 11.16 11.16 0.00 4.02
3974 4094 1.534595 GAGGATGCTACGTACCGGTAG 59.465 57.143 16.41 11.78 42.21 3.18
3975 4095 0.595095 GGATGCTACGTACCGGTAGG 59.405 60.000 28.19 28.19 40.18 3.18
3986 4106 3.209091 CCGGTAGGTCTCATGAGGT 57.791 57.895 22.42 10.18 0.00 3.85
3987 4107 1.486211 CCGGTAGGTCTCATGAGGTT 58.514 55.000 22.42 10.69 0.00 3.50
3988 4108 1.137086 CCGGTAGGTCTCATGAGGTTG 59.863 57.143 22.42 6.06 0.00 3.77
3989 4109 1.471676 CGGTAGGTCTCATGAGGTTGC 60.472 57.143 22.42 11.25 0.00 4.17
3990 4110 1.555075 GGTAGGTCTCATGAGGTTGCA 59.445 52.381 22.42 0.00 0.00 4.08
3991 4111 2.171448 GGTAGGTCTCATGAGGTTGCAT 59.829 50.000 22.42 10.53 0.00 3.96
3992 4112 3.388024 GGTAGGTCTCATGAGGTTGCATA 59.612 47.826 22.42 9.64 0.00 3.14
3993 4113 4.141711 GGTAGGTCTCATGAGGTTGCATAA 60.142 45.833 22.42 0.00 0.00 1.90
3994 4114 4.785346 AGGTCTCATGAGGTTGCATAAT 57.215 40.909 22.42 0.00 0.00 1.28
3995 4115 4.712476 AGGTCTCATGAGGTTGCATAATC 58.288 43.478 22.42 0.90 0.00 1.75
3996 4116 4.411540 AGGTCTCATGAGGTTGCATAATCT 59.588 41.667 22.42 3.37 0.00 2.40
3997 4117 5.604231 AGGTCTCATGAGGTTGCATAATCTA 59.396 40.000 22.42 0.00 0.00 1.98
3998 4118 5.698545 GGTCTCATGAGGTTGCATAATCTAC 59.301 44.000 22.42 8.16 0.00 2.59
3999 4119 6.463614 GGTCTCATGAGGTTGCATAATCTACT 60.464 42.308 22.42 0.00 0.00 2.57
4000 4120 6.989169 GTCTCATGAGGTTGCATAATCTACTT 59.011 38.462 22.42 0.00 0.00 2.24
4001 4121 7.170658 GTCTCATGAGGTTGCATAATCTACTTC 59.829 40.741 22.42 0.00 0.00 3.01
4002 4122 6.888105 TCATGAGGTTGCATAATCTACTTCA 58.112 36.000 1.83 1.83 33.97 3.02
4003 4123 6.988580 TCATGAGGTTGCATAATCTACTTCAG 59.011 38.462 5.24 0.00 33.28 3.02
4004 4124 5.674525 TGAGGTTGCATAATCTACTTCAGG 58.325 41.667 0.00 0.00 0.00 3.86
4005 4125 5.425217 TGAGGTTGCATAATCTACTTCAGGA 59.575 40.000 0.00 0.00 0.00 3.86
4006 4126 5.675538 AGGTTGCATAATCTACTTCAGGAC 58.324 41.667 0.00 0.00 0.00 3.85
4007 4127 5.426833 AGGTTGCATAATCTACTTCAGGACT 59.573 40.000 0.00 0.00 0.00 3.85
4008 4128 5.525378 GGTTGCATAATCTACTTCAGGACTG 59.475 44.000 0.00 0.00 0.00 3.51
4009 4129 5.282055 TGCATAATCTACTTCAGGACTGG 57.718 43.478 0.00 0.00 0.00 4.00
4010 4130 4.101585 TGCATAATCTACTTCAGGACTGGG 59.898 45.833 0.00 0.00 0.00 4.45
4011 4131 4.345257 GCATAATCTACTTCAGGACTGGGA 59.655 45.833 0.00 0.00 0.00 4.37
4012 4132 5.012561 GCATAATCTACTTCAGGACTGGGAT 59.987 44.000 0.00 0.00 0.00 3.85
4013 4133 6.462500 CATAATCTACTTCAGGACTGGGATG 58.538 44.000 0.00 0.00 0.00 3.51
4014 4134 3.757947 TCTACTTCAGGACTGGGATGA 57.242 47.619 0.00 0.00 0.00 2.92
4015 4135 3.636679 TCTACTTCAGGACTGGGATGAG 58.363 50.000 0.00 0.00 0.00 2.90
4016 4136 2.630889 ACTTCAGGACTGGGATGAGA 57.369 50.000 0.00 0.00 0.00 3.27
4017 4137 3.127791 ACTTCAGGACTGGGATGAGAT 57.872 47.619 0.00 0.00 0.00 2.75
4018 4138 3.458831 ACTTCAGGACTGGGATGAGATT 58.541 45.455 0.00 0.00 0.00 2.40
4019 4139 3.848975 ACTTCAGGACTGGGATGAGATTT 59.151 43.478 0.00 0.00 0.00 2.17
4020 4140 3.920231 TCAGGACTGGGATGAGATTTG 57.080 47.619 0.00 0.00 0.00 2.32
4021 4141 3.453868 TCAGGACTGGGATGAGATTTGA 58.546 45.455 0.00 0.00 0.00 2.69
4022 4142 3.198635 TCAGGACTGGGATGAGATTTGAC 59.801 47.826 0.00 0.00 0.00 3.18
4023 4143 3.054875 CAGGACTGGGATGAGATTTGACA 60.055 47.826 0.00 0.00 0.00 3.58
4024 4144 3.199508 AGGACTGGGATGAGATTTGACAG 59.800 47.826 0.00 0.00 0.00 3.51
4025 4145 3.198635 GGACTGGGATGAGATTTGACAGA 59.801 47.826 0.00 0.00 0.00 3.41
4026 4146 4.323792 GGACTGGGATGAGATTTGACAGAA 60.324 45.833 0.00 0.00 0.00 3.02
4027 4147 5.246981 ACTGGGATGAGATTTGACAGAAA 57.753 39.130 0.00 0.00 0.00 2.52
4028 4148 5.006386 ACTGGGATGAGATTTGACAGAAAC 58.994 41.667 0.00 0.00 0.00 2.78
4029 4149 5.222007 ACTGGGATGAGATTTGACAGAAACT 60.222 40.000 0.00 0.00 0.00 2.66
4030 4150 5.005740 TGGGATGAGATTTGACAGAAACTG 58.994 41.667 0.00 0.00 37.52 3.16
4031 4151 4.397417 GGGATGAGATTTGACAGAAACTGG 59.603 45.833 0.00 0.00 35.51 4.00
4032 4152 5.006386 GGATGAGATTTGACAGAAACTGGT 58.994 41.667 0.00 0.00 35.51 4.00
4033 4153 5.106396 GGATGAGATTTGACAGAAACTGGTG 60.106 44.000 0.00 0.00 35.51 4.17
4034 4154 3.565482 TGAGATTTGACAGAAACTGGTGC 59.435 43.478 0.00 0.00 35.51 5.01
4035 4155 3.817647 GAGATTTGACAGAAACTGGTGCT 59.182 43.478 0.00 0.00 35.51 4.40
4036 4156 4.973168 AGATTTGACAGAAACTGGTGCTA 58.027 39.130 0.00 0.00 35.51 3.49
4037 4157 5.564550 AGATTTGACAGAAACTGGTGCTAT 58.435 37.500 0.00 0.00 35.51 2.97
4038 4158 5.413833 AGATTTGACAGAAACTGGTGCTATG 59.586 40.000 0.00 0.00 35.51 2.23
4039 4159 3.769739 TGACAGAAACTGGTGCTATGT 57.230 42.857 0.00 0.00 35.51 2.29
4040 4160 3.402110 TGACAGAAACTGGTGCTATGTG 58.598 45.455 0.00 0.00 35.51 3.21
4041 4161 3.181455 TGACAGAAACTGGTGCTATGTGT 60.181 43.478 0.00 0.00 35.51 3.72
4042 4162 4.039852 TGACAGAAACTGGTGCTATGTGTA 59.960 41.667 0.00 0.00 35.51 2.90
4043 4163 4.569943 ACAGAAACTGGTGCTATGTGTAG 58.430 43.478 0.00 0.00 35.51 2.74
4044 4164 4.283467 ACAGAAACTGGTGCTATGTGTAGA 59.717 41.667 0.00 0.00 35.51 2.59
4045 4165 5.221641 ACAGAAACTGGTGCTATGTGTAGAA 60.222 40.000 0.00 0.00 35.51 2.10
4046 4166 5.349817 CAGAAACTGGTGCTATGTGTAGAAG 59.650 44.000 0.00 0.00 0.00 2.85
4047 4167 5.246203 AGAAACTGGTGCTATGTGTAGAAGA 59.754 40.000 0.00 0.00 0.00 2.87
4048 4168 5.683876 AACTGGTGCTATGTGTAGAAGAT 57.316 39.130 0.00 0.00 0.00 2.40
4049 4169 5.683876 ACTGGTGCTATGTGTAGAAGATT 57.316 39.130 0.00 0.00 0.00 2.40
4050 4170 6.791867 ACTGGTGCTATGTGTAGAAGATTA 57.208 37.500 0.00 0.00 0.00 1.75
4051 4171 6.574350 ACTGGTGCTATGTGTAGAAGATTAC 58.426 40.000 0.00 0.00 0.00 1.89
4052 4172 5.588240 TGGTGCTATGTGTAGAAGATTACG 58.412 41.667 0.00 0.00 0.00 3.18
4053 4173 4.444720 GGTGCTATGTGTAGAAGATTACGC 59.555 45.833 0.00 0.00 35.22 4.42
4054 4174 5.041287 GTGCTATGTGTAGAAGATTACGCA 58.959 41.667 2.39 2.39 45.11 5.24
4055 4175 5.518847 GTGCTATGTGTAGAAGATTACGCAA 59.481 40.000 3.86 0.00 44.45 4.85
4056 4176 5.518847 TGCTATGTGTAGAAGATTACGCAAC 59.481 40.000 3.86 0.00 44.45 4.17
4057 4177 5.749109 GCTATGTGTAGAAGATTACGCAACT 59.251 40.000 3.86 0.00 44.45 3.16
4058 4178 6.074782 GCTATGTGTAGAAGATTACGCAACTC 60.075 42.308 3.86 0.00 44.45 3.01
4059 4179 5.128992 TGTGTAGAAGATTACGCAACTCA 57.871 39.130 0.00 0.00 40.12 3.41
4060 4180 5.720202 TGTGTAGAAGATTACGCAACTCAT 58.280 37.500 0.00 0.00 40.12 2.90
4061 4181 5.576774 TGTGTAGAAGATTACGCAACTCATG 59.423 40.000 0.00 0.00 40.12 3.07
4062 4182 5.805486 GTGTAGAAGATTACGCAACTCATGA 59.195 40.000 0.00 0.00 34.86 3.07
4063 4183 6.477033 GTGTAGAAGATTACGCAACTCATGAT 59.523 38.462 0.00 0.00 34.86 2.45
4064 4184 7.648112 GTGTAGAAGATTACGCAACTCATGATA 59.352 37.037 0.00 0.00 34.86 2.15
4065 4185 8.360390 TGTAGAAGATTACGCAACTCATGATAT 58.640 33.333 0.00 0.00 0.00 1.63
4066 4186 9.841880 GTAGAAGATTACGCAACTCATGATATA 57.158 33.333 0.00 0.00 0.00 0.86
4068 4188 9.935241 AGAAGATTACGCAACTCATGATATATT 57.065 29.630 0.00 0.00 0.00 1.28
4069 4189 9.964253 GAAGATTACGCAACTCATGATATATTG 57.036 33.333 0.00 0.47 0.00 1.90
4070 4190 9.710900 AAGATTACGCAACTCATGATATATTGA 57.289 29.630 0.00 0.00 0.00 2.57
4071 4191 9.881649 AGATTACGCAACTCATGATATATTGAT 57.118 29.630 0.00 0.00 0.00 2.57
4073 4193 6.638168 ACGCAACTCATGATATATTGATCG 57.362 37.500 0.00 2.54 0.00 3.69
4074 4194 5.578336 ACGCAACTCATGATATATTGATCGG 59.422 40.000 0.00 0.00 0.00 4.18
4075 4195 5.501413 CGCAACTCATGATATATTGATCGGC 60.501 44.000 0.00 0.00 0.00 5.54
4076 4196 5.583854 GCAACTCATGATATATTGATCGGCT 59.416 40.000 0.00 0.00 0.00 5.52
4077 4197 6.456584 GCAACTCATGATATATTGATCGGCTG 60.457 42.308 0.00 0.00 0.00 4.85
4078 4198 5.114780 ACTCATGATATATTGATCGGCTGC 58.885 41.667 0.00 0.00 0.00 5.25
4079 4199 5.088680 TCATGATATATTGATCGGCTGCA 57.911 39.130 0.50 0.00 0.00 4.41
4080 4200 5.490159 TCATGATATATTGATCGGCTGCAA 58.510 37.500 0.50 0.00 0.00 4.08
4081 4201 6.117488 TCATGATATATTGATCGGCTGCAAT 58.883 36.000 0.50 4.16 38.24 3.56
4082 4202 7.274447 TCATGATATATTGATCGGCTGCAATA 58.726 34.615 0.50 7.72 40.18 1.90
4083 4203 7.935210 TCATGATATATTGATCGGCTGCAATAT 59.065 33.333 17.33 17.33 45.01 1.28
4084 4204 7.486802 TGATATATTGATCGGCTGCAATATG 57.513 36.000 20.24 0.00 43.65 1.78
4085 4205 4.627611 ATATTGATCGGCTGCAATATGC 57.372 40.909 14.20 0.00 42.79 3.14
4260 4384 1.079127 ACGCAAAGACTGGATCGGG 60.079 57.895 0.00 0.00 0.00 5.14
4287 4411 0.243095 GAAGGACGCGGTAGACAAGT 59.757 55.000 12.47 0.00 0.00 3.16
4312 4436 5.471556 TTGGTCATGATGTCAGCAAATTT 57.528 34.783 0.00 0.00 0.00 1.82
4420 4545 0.870307 CGTCGATGATGAACCGGGTC 60.870 60.000 14.24 14.24 0.00 4.46
4540 4666 3.428282 GGCGACGCCGTTGGAAAT 61.428 61.111 25.24 0.00 39.62 2.17
4595 4721 3.667217 AATGGGCTGCCGCTTGGAT 62.667 57.895 13.40 0.00 36.09 3.41
4601 4727 1.452651 CTGCCGCTTGGATGACCAT 60.453 57.895 0.00 0.00 46.34 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.216178 CCTGCTCGGGCCAAATTTG 59.784 57.895 3.94 11.40 37.74 2.32
1 2 2.649129 GCCTGCTCGGGCCAAATTT 61.649 57.895 3.94 0.00 45.92 1.82
9 10 2.561373 GTTTTTCGCCTGCTCGGG 59.439 61.111 0.00 0.00 0.00 5.14
10 11 2.173382 CGTTTTTCGCCTGCTCGG 59.827 61.111 0.00 0.00 0.00 4.63
11 12 2.173382 CCGTTTTTCGCCTGCTCG 59.827 61.111 0.00 0.00 38.35 5.03
12 13 2.561373 CCCGTTTTTCGCCTGCTC 59.439 61.111 0.00 0.00 38.35 4.26
13 14 3.670377 GCCCGTTTTTCGCCTGCT 61.670 61.111 0.00 0.00 38.35 4.24
14 15 3.207547 AAGCCCGTTTTTCGCCTGC 62.208 57.895 0.00 0.00 38.35 4.85
15 16 1.081442 GAAGCCCGTTTTTCGCCTG 60.081 57.895 0.00 0.00 38.35 4.85
16 17 1.228154 AGAAGCCCGTTTTTCGCCT 60.228 52.632 0.00 0.00 38.35 5.52
17 18 1.081442 CAGAAGCCCGTTTTTCGCC 60.081 57.895 0.00 0.00 38.35 5.54
18 19 1.081442 CCAGAAGCCCGTTTTTCGC 60.081 57.895 0.00 0.00 38.35 4.70
19 20 1.579429 CCCAGAAGCCCGTTTTTCG 59.421 57.895 0.00 0.00 39.52 3.46
20 21 1.532604 CCCCCAGAAGCCCGTTTTTC 61.533 60.000 0.00 0.00 0.00 2.29
21 22 1.533033 CCCCCAGAAGCCCGTTTTT 60.533 57.895 0.00 0.00 0.00 1.94
22 23 2.117423 CCCCCAGAAGCCCGTTTT 59.883 61.111 0.00 0.00 0.00 2.43
39 40 3.292159 AAAAACGGCCCAGTCGCC 61.292 61.111 0.00 0.00 46.13 5.54
69 70 1.852067 CTCCCCAGGCGTTTTTGTCG 61.852 60.000 0.00 0.00 0.00 4.35
70 71 1.524008 CCTCCCCAGGCGTTTTTGTC 61.524 60.000 0.00 0.00 30.98 3.18
71 72 1.530655 CCTCCCCAGGCGTTTTTGT 60.531 57.895 0.00 0.00 30.98 2.83
72 73 2.275380 CCCTCCCCAGGCGTTTTTG 61.275 63.158 0.00 0.00 38.72 2.44
73 74 2.117423 CCCTCCCCAGGCGTTTTT 59.883 61.111 0.00 0.00 38.72 1.94
74 75 4.678743 GCCCTCCCCAGGCGTTTT 62.679 66.667 0.00 0.00 41.41 2.43
80 81 4.052518 CAACAGGCCCTCCCCAGG 62.053 72.222 0.00 0.00 39.98 4.45
81 82 4.052518 CCAACAGGCCCTCCCCAG 62.053 72.222 0.00 0.00 0.00 4.45
112 113 3.244814 CGTTCTGAGCATGTTAGAGCATC 59.755 47.826 0.00 0.00 0.00 3.91
113 114 3.193263 CGTTCTGAGCATGTTAGAGCAT 58.807 45.455 0.00 0.00 0.00 3.79
114 115 2.029020 ACGTTCTGAGCATGTTAGAGCA 60.029 45.455 0.00 0.00 0.00 4.26
115 116 2.611518 ACGTTCTGAGCATGTTAGAGC 58.388 47.619 0.00 0.00 0.00 4.09
116 117 4.237724 TCAACGTTCTGAGCATGTTAGAG 58.762 43.478 0.00 0.00 0.00 2.43
117 118 4.251543 TCAACGTTCTGAGCATGTTAGA 57.748 40.909 0.00 0.00 0.00 2.10
118 119 4.211164 TGTTCAACGTTCTGAGCATGTTAG 59.789 41.667 0.00 0.00 32.35 2.34
119 120 4.123506 TGTTCAACGTTCTGAGCATGTTA 58.876 39.130 0.00 0.00 32.35 2.41
120 121 2.942376 TGTTCAACGTTCTGAGCATGTT 59.058 40.909 0.00 0.00 32.35 2.71
121 122 2.560504 TGTTCAACGTTCTGAGCATGT 58.439 42.857 0.00 0.00 32.35 3.21
177 178 1.280421 GGAGCCAGTGTGGAAGATCTT 59.720 52.381 7.95 7.95 40.96 2.40
230 231 7.970102 ACTCTGTAGGTATTGTTCCTTGTAAA 58.030 34.615 0.00 0.00 36.60 2.01
285 286 6.643770 CCAGAAAGTTTGTTGGATGAAAGATG 59.356 38.462 9.24 0.00 32.34 2.90
321 322 2.543777 TGACACTCACCTAAAGCACC 57.456 50.000 0.00 0.00 0.00 5.01
354 355 5.307976 TGAGAATATTCTGGTCCATTCGGAT 59.692 40.000 22.61 0.00 39.87 4.18
358 359 5.762218 CCTGTGAGAATATTCTGGTCCATTC 59.238 44.000 22.61 6.43 37.73 2.67
383 384 3.450817 TGCTCAAAGACTCCGGAATATCA 59.549 43.478 5.23 0.00 0.00 2.15
452 453 7.888812 CACTTAGTGATGTTGGAATGGATCCG 61.889 46.154 6.50 0.00 43.04 4.18
464 465 8.543774 AGATATTTCAGGTCACTTAGTGATGTT 58.456 33.333 18.52 4.55 44.63 2.71
471 472 7.331026 TGGTTCAGATATTTCAGGTCACTTAG 58.669 38.462 0.00 0.00 0.00 2.18
521 522 5.044179 TCCATTCCTTGGTATTTCTCCATGT 60.044 40.000 0.00 0.00 46.52 3.21
539 540 8.116136 GCCGTTTCATTTTCAAATATTCCATTC 58.884 33.333 0.00 0.00 0.00 2.67
545 546 7.961325 AACAGCCGTTTCATTTTCAAATATT 57.039 28.000 0.00 0.00 28.09 1.28
546 547 7.961325 AAACAGCCGTTTCATTTTCAAATAT 57.039 28.000 0.00 0.00 41.60 1.28
560 561 2.154462 CCATTGAGAGAAACAGCCGTT 58.846 47.619 0.00 0.00 36.73 4.44
576 577 1.908619 GCAAAGTCCCCAATTCCCATT 59.091 47.619 0.00 0.00 0.00 3.16
596 597 2.972625 TGAAGATTTACTGCTCCACCG 58.027 47.619 0.00 0.00 0.00 4.94
608 609 5.954150 AGAACAAGTGGGCATATGAAGATTT 59.046 36.000 6.97 0.00 0.00 2.17
609 610 5.513233 AGAACAAGTGGGCATATGAAGATT 58.487 37.500 6.97 0.00 0.00 2.40
616 617 6.014156 GGAGATAGTAGAACAAGTGGGCATAT 60.014 42.308 0.00 0.00 0.00 1.78
629 630 8.532819 GTTTCTTTTCTCTGGGAGATAGTAGAA 58.467 37.037 0.00 3.64 38.56 2.10
633 634 6.271159 AGTGTTTCTTTTCTCTGGGAGATAGT 59.729 38.462 0.00 0.00 38.56 2.12
638 639 4.455606 ACAGTGTTTCTTTTCTCTGGGAG 58.544 43.478 0.00 0.00 31.95 4.30
641 642 7.210873 AGTAGTACAGTGTTTCTTTTCTCTGG 58.789 38.462 0.00 0.00 31.95 3.86
652 653 5.363005 ACTCTGACCAAGTAGTACAGTGTTT 59.637 40.000 0.00 0.00 33.59 2.83
655 656 6.761099 ATACTCTGACCAAGTAGTACAGTG 57.239 41.667 2.52 0.18 32.98 3.66
773 774 3.732212 AGGAAAATGCTTGCCAAAAGAC 58.268 40.909 0.00 0.00 31.51 3.01
857 858 7.863901 ATATACTGAACCATAGCTTCCTCTT 57.136 36.000 0.00 0.00 0.00 2.85
869 870 8.639761 GTTAGCTTTCCTCTATATACTGAACCA 58.360 37.037 0.00 0.00 0.00 3.67
891 892 6.363357 GCCACTTGTATTTTTGCTTGAGTTAG 59.637 38.462 0.00 0.00 0.00 2.34
954 955 8.557592 TGAAAGCATTACCATCATCATCTATC 57.442 34.615 0.00 0.00 0.00 2.08
985 1066 7.202526 CCGTTTGGCATGAACTCATAAATTAT 58.797 34.615 0.00 0.00 34.26 1.28
1023 1104 4.290155 CAGCAGATTTTGTGTGTAACCAC 58.710 43.478 0.00 0.00 42.19 4.16
1233 1314 6.046593 ACTTGATGTTGACTTTGAGTTACGA 58.953 36.000 0.00 0.00 0.00 3.43
1239 1320 5.210715 GCTGAACTTGATGTTGACTTTGAG 58.789 41.667 0.00 0.00 39.30 3.02
1326 1422 6.429078 CCTCACACAAATATATGATGTGGAGG 59.571 42.308 27.91 27.91 46.67 4.30
1437 1540 1.922447 TCCCCATAGGTTGATGCTTGT 59.078 47.619 0.00 0.00 36.75 3.16
1541 1645 4.821805 AGTTCGTCTCCACAAAATTGACAT 59.178 37.500 0.00 0.00 0.00 3.06
1559 1663 5.048434 TGCAGTATATGATCTGGAGAGTTCG 60.048 44.000 0.00 0.00 32.94 3.95
1575 1679 9.075678 AGATGATCATCGATGATATGCAGTATA 57.924 33.333 34.72 15.87 46.84 1.47
1610 1714 2.885135 ATGAGTGAATCCCTTGCACA 57.115 45.000 0.00 0.00 35.08 4.57
1625 1729 2.534298 CTGCTTCCACTGTCGTATGAG 58.466 52.381 0.00 0.00 0.00 2.90
1630 1734 0.468226 TTTCCTGCTTCCACTGTCGT 59.532 50.000 0.00 0.00 0.00 4.34
1632 1736 1.967319 TGTTTCCTGCTTCCACTGTC 58.033 50.000 0.00 0.00 0.00 3.51
1637 1741 7.071196 ACTGATATACTATGTTTCCTGCTTCCA 59.929 37.037 0.00 0.00 0.00 3.53
1653 1757 3.560636 GGCACCAACCACTGATATACT 57.439 47.619 0.00 0.00 0.00 2.12
1672 1776 0.326264 AGAGCTACTTGCACAAGGGG 59.674 55.000 14.51 7.68 45.94 4.79
1695 1799 0.179032 TTGGGAACAGACGTGTGCAT 60.179 50.000 13.35 1.49 44.54 3.96
1701 1805 0.318762 GCTCTCTTGGGAACAGACGT 59.681 55.000 0.00 0.00 44.54 4.34
1753 1857 1.260544 AAAAATGTCCTGGCTGCCTC 58.739 50.000 21.03 8.32 0.00 4.70
1844 1951 1.645710 TCTGACTCTCAGGGGGTTTC 58.354 55.000 0.00 0.00 44.39 2.78
1928 2042 2.563261 AGGACCGATCGTCTAGCATA 57.437 50.000 15.09 0.00 41.64 3.14
1951 2066 0.243907 TCAACGTCTGGCTAGCTGTC 59.756 55.000 15.72 5.21 0.00 3.51
1984 2099 3.541713 GCTAGACTGCGGGAGGGG 61.542 72.222 0.51 0.00 0.00 4.79
2093 2208 1.189752 CTCTGCTGTTGGAGGCTCTA 58.810 55.000 15.23 5.21 32.15 2.43
2240 2355 1.204704 TGCCGATCACTTGATCTTCGT 59.795 47.619 15.55 0.00 46.58 3.85
2409 2524 1.664321 GCTCCGGCGTCCTTTCTCTA 61.664 60.000 6.01 0.00 0.00 2.43
2544 2659 0.387239 GTTCAGCAAATGGTGGACGC 60.387 55.000 12.21 0.00 41.50 5.19
2594 2709 2.432456 CTGCTTGTGTCGCGGCTA 60.432 61.111 13.81 0.00 0.00 3.93
2602 2717 1.344953 TGTGAGGTCCCTGCTTGTGT 61.345 55.000 0.00 0.00 0.00 3.72
2645 2760 3.706888 GCTGACAGCTTGGAGGTCTCC 62.707 61.905 20.41 9.96 43.33 3.71
2661 2776 1.630126 GCCCTCTTCTCCCATGCTGA 61.630 60.000 0.00 0.00 0.00 4.26
2830 2946 2.680352 TCCTGAGCCCTGGTCGTC 60.680 66.667 0.00 0.00 32.15 4.20
2831 2947 2.681778 CTCCTGAGCCCTGGTCGT 60.682 66.667 0.00 0.00 32.15 4.34
2890 3006 0.178973 TCACTCCAGAGTTCCGTCCA 60.179 55.000 0.00 0.00 40.20 4.02
2897 3013 2.232452 CCATCGTCTTCACTCCAGAGTT 59.768 50.000 0.00 0.00 40.20 3.01
2927 3043 1.819288 CAGAACGACTGCCTTCTCCTA 59.181 52.381 0.00 0.00 39.86 2.94
2933 3049 1.004440 GGCTCAGAACGACTGCCTT 60.004 57.895 8.88 0.00 45.38 4.35
2958 3074 3.998672 GGACCTGGGTGTTCGCGA 61.999 66.667 3.71 3.71 0.00 5.87
3041 3157 4.988744 TTCCTTTGGAACGTGGCA 57.011 50.000 0.00 0.00 36.71 4.92
3311 3428 2.589442 GTGGTTGCCACGTTCGGA 60.589 61.111 2.31 0.00 44.95 4.55
3344 3461 2.751036 CCCATGCATGTGGACGCA 60.751 61.111 24.58 0.00 42.02 5.24
3377 3494 1.066858 GGGCTCGTCATCAACTTCTCA 60.067 52.381 0.00 0.00 0.00 3.27
3567 3685 9.002600 TGTTTGCTCCAACATATATATGATGTC 57.997 33.333 26.05 15.84 36.50 3.06
3612 3730 6.371548 GTCATTTGCCAAATCACTCTAGTGTA 59.628 38.462 9.81 0.00 45.76 2.90
3721 3840 5.909610 GCGGCATTAGTAGTCAATCAAATTC 59.090 40.000 0.00 0.00 0.00 2.17
3736 3856 3.248029 GCCTCGATGCGGCATTAG 58.752 61.111 17.78 16.40 46.77 1.73
3752 3872 3.370061 GTGAACTCTTATGGTTGTACCGC 59.630 47.826 0.00 0.00 42.58 5.68
3754 3874 4.387862 CGTGTGAACTCTTATGGTTGTACC 59.612 45.833 0.00 0.00 39.22 3.34
3755 3875 4.143179 GCGTGTGAACTCTTATGGTTGTAC 60.143 45.833 0.00 0.00 0.00 2.90
3762 3882 1.394917 GGCTGCGTGTGAACTCTTATG 59.605 52.381 0.00 0.00 0.00 1.90
3763 3883 1.276421 AGGCTGCGTGTGAACTCTTAT 59.724 47.619 0.00 0.00 0.00 1.73
3770 3890 3.603158 TTTATAGAGGCTGCGTGTGAA 57.397 42.857 0.00 0.00 0.00 3.18
3777 3897 4.734695 GCCAACACAATTTATAGAGGCTGC 60.735 45.833 0.00 0.00 36.72 5.25
3792 3912 8.291191 TCATCTTAATTATTCATGCCAACACA 57.709 30.769 0.00 0.00 0.00 3.72
3822 3942 8.511321 CCGCATTTTACTCATGGCTAATTTATA 58.489 33.333 0.00 0.00 0.00 0.98
3849 3969 3.111098 CAGCAGACTGTTTTGTCAAAGC 58.889 45.455 3.99 5.28 39.22 3.51
3863 3983 3.254892 GCTAGTTGTCCTAACAGCAGAC 58.745 50.000 0.00 0.00 38.93 3.51
3870 3990 2.666994 GAGCGTTGCTAGTTGTCCTAAC 59.333 50.000 0.00 0.00 39.88 2.34
3875 3995 1.416434 GCGAGCGTTGCTAGTTGTC 59.584 57.895 1.07 0.00 39.88 3.18
3898 4018 1.421410 GAAGTATGGACAGCGTGGCG 61.421 60.000 0.00 0.00 0.00 5.69
3899 4019 0.391130 TGAAGTATGGACAGCGTGGC 60.391 55.000 0.00 0.00 0.00 5.01
3900 4020 1.066858 ACTGAAGTATGGACAGCGTGG 60.067 52.381 0.00 0.00 35.38 4.94
3901 4021 2.263077 GACTGAAGTATGGACAGCGTG 58.737 52.381 0.00 0.00 35.38 5.34
3902 4022 1.893137 TGACTGAAGTATGGACAGCGT 59.107 47.619 0.00 0.00 35.38 5.07
3903 4023 2.534298 CTGACTGAAGTATGGACAGCG 58.466 52.381 0.00 0.00 35.38 5.18
3904 4024 2.093764 AGCTGACTGAAGTATGGACAGC 60.094 50.000 11.25 11.25 46.02 4.40
3905 4025 3.883830 AGCTGACTGAAGTATGGACAG 57.116 47.619 0.00 0.00 37.62 3.51
3918 4038 2.432146 TGTGAAGAGACAACAGCTGACT 59.568 45.455 23.35 13.39 32.37 3.41
3919 4039 2.541762 GTGTGAAGAGACAACAGCTGAC 59.458 50.000 23.35 8.67 0.00 3.51
3920 4040 2.432146 AGTGTGAAGAGACAACAGCTGA 59.568 45.455 23.35 0.00 0.00 4.26
3921 4041 2.831333 AGTGTGAAGAGACAACAGCTG 58.169 47.619 13.48 13.48 0.00 4.24
3922 4042 3.550437 AAGTGTGAAGAGACAACAGCT 57.450 42.857 0.00 0.00 0.00 4.24
3923 4043 3.623060 TGAAAGTGTGAAGAGACAACAGC 59.377 43.478 0.00 0.00 0.00 4.40
3924 4044 5.801350 TTGAAAGTGTGAAGAGACAACAG 57.199 39.130 0.00 0.00 0.00 3.16
3925 4045 7.047891 ACTATTGAAAGTGTGAAGAGACAACA 58.952 34.615 0.00 0.00 0.00 3.33
3926 4046 7.484035 ACTATTGAAAGTGTGAAGAGACAAC 57.516 36.000 0.00 0.00 0.00 3.32
3927 4047 7.768582 TCAACTATTGAAAGTGTGAAGAGACAA 59.231 33.333 0.00 0.00 36.59 3.18
3928 4048 7.272244 TCAACTATTGAAAGTGTGAAGAGACA 58.728 34.615 0.00 0.00 36.59 3.41
3929 4049 7.653713 TCTCAACTATTGAAAGTGTGAAGAGAC 59.346 37.037 0.00 0.00 39.58 3.36
3930 4050 7.726216 TCTCAACTATTGAAAGTGTGAAGAGA 58.274 34.615 0.00 0.00 39.58 3.10
3931 4051 7.117523 CCTCTCAACTATTGAAAGTGTGAAGAG 59.882 40.741 0.00 0.00 39.58 2.85
3932 4052 6.931281 CCTCTCAACTATTGAAAGTGTGAAGA 59.069 38.462 0.00 0.00 39.58 2.87
3933 4053 6.931281 TCCTCTCAACTATTGAAAGTGTGAAG 59.069 38.462 0.00 0.00 39.58 3.02
3934 4054 6.826668 TCCTCTCAACTATTGAAAGTGTGAA 58.173 36.000 0.00 0.00 39.58 3.18
3935 4055 6.419484 TCCTCTCAACTATTGAAAGTGTGA 57.581 37.500 0.00 0.00 39.58 3.58
3936 4056 6.402983 GCATCCTCTCAACTATTGAAAGTGTG 60.403 42.308 0.00 0.00 39.58 3.82
3937 4057 5.645497 GCATCCTCTCAACTATTGAAAGTGT 59.355 40.000 0.00 0.00 39.58 3.55
3938 4058 5.879223 AGCATCCTCTCAACTATTGAAAGTG 59.121 40.000 0.00 0.00 39.58 3.16
3939 4059 6.059787 AGCATCCTCTCAACTATTGAAAGT 57.940 37.500 0.00 0.00 39.58 2.66
3940 4060 6.199908 CGTAGCATCCTCTCAACTATTGAAAG 59.800 42.308 0.00 0.00 39.58 2.62
3941 4061 6.042777 CGTAGCATCCTCTCAACTATTGAAA 58.957 40.000 0.00 0.00 39.58 2.69
3942 4062 5.127194 ACGTAGCATCCTCTCAACTATTGAA 59.873 40.000 0.00 0.00 39.58 2.69
3943 4063 4.645136 ACGTAGCATCCTCTCAACTATTGA 59.355 41.667 0.00 0.00 38.17 2.57
3944 4064 4.938080 ACGTAGCATCCTCTCAACTATTG 58.062 43.478 0.00 0.00 0.00 1.90
3945 4065 5.009811 GGTACGTAGCATCCTCTCAACTATT 59.990 44.000 19.43 0.00 0.00 1.73
3946 4066 4.519730 GGTACGTAGCATCCTCTCAACTAT 59.480 45.833 19.43 0.00 0.00 2.12
3947 4067 3.881688 GGTACGTAGCATCCTCTCAACTA 59.118 47.826 19.43 0.00 0.00 2.24
3948 4068 2.688958 GGTACGTAGCATCCTCTCAACT 59.311 50.000 19.43 0.00 0.00 3.16
3949 4069 3.081329 GGTACGTAGCATCCTCTCAAC 57.919 52.381 19.43 0.00 0.00 3.18
3965 4085 1.955080 CCTCATGAGACCTACCGGTAC 59.045 57.143 24.62 0.70 45.73 3.34
3966 4086 1.567649 ACCTCATGAGACCTACCGGTA 59.432 52.381 24.62 14.95 45.73 4.02
3968 4088 1.137086 CAACCTCATGAGACCTACCGG 59.863 57.143 24.62 8.05 0.00 5.28
3969 4089 1.471676 GCAACCTCATGAGACCTACCG 60.472 57.143 24.62 7.77 0.00 4.02
3970 4090 1.555075 TGCAACCTCATGAGACCTACC 59.445 52.381 24.62 7.56 0.00 3.18
3971 4091 3.550437 ATGCAACCTCATGAGACCTAC 57.450 47.619 24.62 9.63 0.00 3.18
3972 4092 5.604231 AGATTATGCAACCTCATGAGACCTA 59.396 40.000 24.62 6.69 0.00 3.08
3973 4093 4.411540 AGATTATGCAACCTCATGAGACCT 59.588 41.667 24.62 4.85 0.00 3.85
3974 4094 4.712476 AGATTATGCAACCTCATGAGACC 58.288 43.478 24.62 9.23 0.00 3.85
3975 4095 6.520272 AGTAGATTATGCAACCTCATGAGAC 58.480 40.000 24.62 9.05 0.00 3.36
3976 4096 6.737720 AGTAGATTATGCAACCTCATGAGA 57.262 37.500 24.62 3.71 0.00 3.27
3977 4097 6.988580 TGAAGTAGATTATGCAACCTCATGAG 59.011 38.462 16.24 16.24 0.00 2.90
3978 4098 6.888105 TGAAGTAGATTATGCAACCTCATGA 58.112 36.000 0.00 0.00 0.00 3.07
3979 4099 6.204301 CCTGAAGTAGATTATGCAACCTCATG 59.796 42.308 0.00 0.00 0.00 3.07
3980 4100 6.100279 TCCTGAAGTAGATTATGCAACCTCAT 59.900 38.462 0.00 0.00 0.00 2.90
3981 4101 5.425217 TCCTGAAGTAGATTATGCAACCTCA 59.575 40.000 0.00 0.00 0.00 3.86
3982 4102 5.755861 GTCCTGAAGTAGATTATGCAACCTC 59.244 44.000 0.00 0.00 0.00 3.85
3983 4103 5.426833 AGTCCTGAAGTAGATTATGCAACCT 59.573 40.000 0.00 0.00 0.00 3.50
3984 4104 5.525378 CAGTCCTGAAGTAGATTATGCAACC 59.475 44.000 0.00 0.00 0.00 3.77
3985 4105 5.525378 CCAGTCCTGAAGTAGATTATGCAAC 59.475 44.000 0.00 0.00 0.00 4.17
3986 4106 5.396772 CCCAGTCCTGAAGTAGATTATGCAA 60.397 44.000 0.00 0.00 0.00 4.08
3987 4107 4.101585 CCCAGTCCTGAAGTAGATTATGCA 59.898 45.833 0.00 0.00 0.00 3.96
3988 4108 4.345257 TCCCAGTCCTGAAGTAGATTATGC 59.655 45.833 0.00 0.00 0.00 3.14
3989 4109 6.268617 TCATCCCAGTCCTGAAGTAGATTATG 59.731 42.308 0.00 0.00 0.00 1.90
3990 4110 6.385443 TCATCCCAGTCCTGAAGTAGATTAT 58.615 40.000 0.00 0.00 0.00 1.28
3991 4111 5.777449 TCATCCCAGTCCTGAAGTAGATTA 58.223 41.667 0.00 0.00 0.00 1.75
3992 4112 4.624913 TCATCCCAGTCCTGAAGTAGATT 58.375 43.478 0.00 0.00 0.00 2.40
3993 4113 4.078922 TCTCATCCCAGTCCTGAAGTAGAT 60.079 45.833 0.00 0.00 0.00 1.98
3994 4114 3.269643 TCTCATCCCAGTCCTGAAGTAGA 59.730 47.826 0.00 0.00 0.00 2.59
3995 4115 3.636679 TCTCATCCCAGTCCTGAAGTAG 58.363 50.000 0.00 0.00 0.00 2.57
3996 4116 3.757947 TCTCATCCCAGTCCTGAAGTA 57.242 47.619 0.00 0.00 0.00 2.24
3997 4117 2.630889 TCTCATCCCAGTCCTGAAGT 57.369 50.000 0.00 0.00 0.00 3.01
3998 4118 4.080695 TCAAATCTCATCCCAGTCCTGAAG 60.081 45.833 0.00 0.00 0.00 3.02
3999 4119 3.845992 TCAAATCTCATCCCAGTCCTGAA 59.154 43.478 0.00 0.00 0.00 3.02
4000 4120 3.198635 GTCAAATCTCATCCCAGTCCTGA 59.801 47.826 0.00 0.00 0.00 3.86
4001 4121 3.054875 TGTCAAATCTCATCCCAGTCCTG 60.055 47.826 0.00 0.00 0.00 3.86
4002 4122 3.184628 TGTCAAATCTCATCCCAGTCCT 58.815 45.455 0.00 0.00 0.00 3.85
4003 4123 3.198635 TCTGTCAAATCTCATCCCAGTCC 59.801 47.826 0.00 0.00 0.00 3.85
4004 4124 4.478206 TCTGTCAAATCTCATCCCAGTC 57.522 45.455 0.00 0.00 0.00 3.51
4005 4125 4.916041 TTCTGTCAAATCTCATCCCAGT 57.084 40.909 0.00 0.00 0.00 4.00
4006 4126 5.123502 CAGTTTCTGTCAAATCTCATCCCAG 59.876 44.000 0.00 0.00 0.00 4.45
4007 4127 5.005740 CAGTTTCTGTCAAATCTCATCCCA 58.994 41.667 0.00 0.00 0.00 4.37
4008 4128 4.397417 CCAGTTTCTGTCAAATCTCATCCC 59.603 45.833 0.00 0.00 0.00 3.85
4009 4129 5.006386 ACCAGTTTCTGTCAAATCTCATCC 58.994 41.667 0.00 0.00 0.00 3.51
4010 4130 5.618640 GCACCAGTTTCTGTCAAATCTCATC 60.619 44.000 0.00 0.00 0.00 2.92
4011 4131 4.217118 GCACCAGTTTCTGTCAAATCTCAT 59.783 41.667 0.00 0.00 0.00 2.90
4012 4132 3.565482 GCACCAGTTTCTGTCAAATCTCA 59.435 43.478 0.00 0.00 0.00 3.27
4013 4133 3.817647 AGCACCAGTTTCTGTCAAATCTC 59.182 43.478 0.00 0.00 0.00 2.75
4014 4134 3.825328 AGCACCAGTTTCTGTCAAATCT 58.175 40.909 0.00 0.00 0.00 2.40
4015 4135 5.182001 ACATAGCACCAGTTTCTGTCAAATC 59.818 40.000 0.00 0.00 0.00 2.17
4016 4136 5.048504 CACATAGCACCAGTTTCTGTCAAAT 60.049 40.000 0.00 0.00 0.00 2.32
4017 4137 4.275689 CACATAGCACCAGTTTCTGTCAAA 59.724 41.667 0.00 0.00 0.00 2.69
4018 4138 3.814842 CACATAGCACCAGTTTCTGTCAA 59.185 43.478 0.00 0.00 0.00 3.18
4019 4139 3.181455 ACACATAGCACCAGTTTCTGTCA 60.181 43.478 0.00 0.00 0.00 3.58
4020 4140 3.403038 ACACATAGCACCAGTTTCTGTC 58.597 45.455 0.00 0.00 0.00 3.51
4021 4141 3.492102 ACACATAGCACCAGTTTCTGT 57.508 42.857 0.00 0.00 0.00 3.41
4022 4142 4.820897 TCTACACATAGCACCAGTTTCTG 58.179 43.478 0.00 0.00 0.00 3.02
4023 4143 5.246203 TCTTCTACACATAGCACCAGTTTCT 59.754 40.000 0.00 0.00 0.00 2.52
4024 4144 5.479306 TCTTCTACACATAGCACCAGTTTC 58.521 41.667 0.00 0.00 0.00 2.78
4025 4145 5.483685 TCTTCTACACATAGCACCAGTTT 57.516 39.130 0.00 0.00 0.00 2.66
4026 4146 5.683876 ATCTTCTACACATAGCACCAGTT 57.316 39.130 0.00 0.00 0.00 3.16
4027 4147 5.683876 AATCTTCTACACATAGCACCAGT 57.316 39.130 0.00 0.00 0.00 4.00
4028 4148 5.687730 CGTAATCTTCTACACATAGCACCAG 59.312 44.000 0.00 0.00 0.00 4.00
4029 4149 5.588240 CGTAATCTTCTACACATAGCACCA 58.412 41.667 0.00 0.00 0.00 4.17
4030 4150 4.444720 GCGTAATCTTCTACACATAGCACC 59.555 45.833 0.00 0.00 0.00 5.01
4031 4151 5.041287 TGCGTAATCTTCTACACATAGCAC 58.959 41.667 0.00 0.00 0.00 4.40
4032 4152 5.257082 TGCGTAATCTTCTACACATAGCA 57.743 39.130 0.00 0.00 0.00 3.49
4033 4153 5.749109 AGTTGCGTAATCTTCTACACATAGC 59.251 40.000 0.00 0.00 0.00 2.97
4034 4154 6.972901 TGAGTTGCGTAATCTTCTACACATAG 59.027 38.462 0.00 0.00 0.00 2.23
4035 4155 6.859017 TGAGTTGCGTAATCTTCTACACATA 58.141 36.000 0.00 0.00 0.00 2.29
4036 4156 5.720202 TGAGTTGCGTAATCTTCTACACAT 58.280 37.500 0.00 0.00 0.00 3.21
4037 4157 5.128992 TGAGTTGCGTAATCTTCTACACA 57.871 39.130 0.00 0.00 0.00 3.72
4038 4158 5.805486 TCATGAGTTGCGTAATCTTCTACAC 59.195 40.000 0.00 0.00 0.00 2.90
4039 4159 5.961272 TCATGAGTTGCGTAATCTTCTACA 58.039 37.500 0.00 0.00 0.00 2.74
4040 4160 8.749841 ATATCATGAGTTGCGTAATCTTCTAC 57.250 34.615 0.09 0.00 0.00 2.59
4042 4162 9.935241 AATATATCATGAGTTGCGTAATCTTCT 57.065 29.630 0.09 0.00 0.00 2.85
4043 4163 9.964253 CAATATATCATGAGTTGCGTAATCTTC 57.036 33.333 0.09 0.00 0.00 2.87
4044 4164 9.710900 TCAATATATCATGAGTTGCGTAATCTT 57.289 29.630 0.09 0.00 0.00 2.40
4045 4165 9.881649 ATCAATATATCATGAGTTGCGTAATCT 57.118 29.630 0.09 0.00 0.00 2.40
4047 4167 8.811378 CGATCAATATATCATGAGTTGCGTAAT 58.189 33.333 0.09 0.00 0.00 1.89
4048 4168 7.275560 CCGATCAATATATCATGAGTTGCGTAA 59.724 37.037 0.09 0.00 0.00 3.18
4049 4169 6.751888 CCGATCAATATATCATGAGTTGCGTA 59.248 38.462 0.09 0.00 0.00 4.42
4050 4170 5.578336 CCGATCAATATATCATGAGTTGCGT 59.422 40.000 0.09 0.00 0.00 5.24
4051 4171 5.501413 GCCGATCAATATATCATGAGTTGCG 60.501 44.000 0.09 4.35 0.00 4.85
4052 4172 5.583854 AGCCGATCAATATATCATGAGTTGC 59.416 40.000 0.09 0.00 0.00 4.17
4053 4173 6.456584 GCAGCCGATCAATATATCATGAGTTG 60.457 42.308 0.09 4.28 0.00 3.16
4054 4174 5.583854 GCAGCCGATCAATATATCATGAGTT 59.416 40.000 0.09 0.00 0.00 3.01
4055 4175 5.114780 GCAGCCGATCAATATATCATGAGT 58.885 41.667 0.09 0.00 0.00 3.41
4056 4176 5.114081 TGCAGCCGATCAATATATCATGAG 58.886 41.667 0.09 0.00 0.00 2.90
4057 4177 5.088680 TGCAGCCGATCAATATATCATGA 57.911 39.130 0.00 0.00 0.00 3.07
4058 4178 5.806366 TTGCAGCCGATCAATATATCATG 57.194 39.130 0.00 0.00 0.00 3.07
4059 4179 7.308408 GCATATTGCAGCCGATCAATATATCAT 60.308 37.037 7.03 0.00 44.26 2.45
4060 4180 6.017687 GCATATTGCAGCCGATCAATATATCA 60.018 38.462 7.03 0.00 44.26 2.15
4061 4181 6.369005 GCATATTGCAGCCGATCAATATATC 58.631 40.000 7.03 1.23 44.26 1.63
4062 4182 6.309712 GCATATTGCAGCCGATCAATATAT 57.690 37.500 7.03 0.00 44.26 0.86
4063 4183 5.739752 GCATATTGCAGCCGATCAATATA 57.260 39.130 7.03 0.00 44.26 0.86
4064 4184 4.627611 GCATATTGCAGCCGATCAATAT 57.372 40.909 0.00 0.00 44.26 1.28
4123 4243 1.001181 GACGTGGCTACCCTTTGTACA 59.999 52.381 0.00 0.00 0.00 2.90
4208 4328 2.162338 CTTCGACTGCGGGGGTGTTA 62.162 60.000 0.00 0.00 38.28 2.41
4260 4384 2.100603 CGCGTCCTTCGAGGAGTC 59.899 66.667 0.00 0.00 46.90 3.36
4287 4411 1.629861 TGCTGACATCATGACCAAGGA 59.370 47.619 0.00 0.00 0.00 3.36
4312 4436 1.354101 ACATGTCCCTACGTCCCAAA 58.646 50.000 0.00 0.00 0.00 3.28
4420 4545 3.584052 CGGTCTACCTCTCCGCCG 61.584 72.222 0.00 0.00 37.90 6.46
4530 4656 0.956410 TACCACGCCATTTCCAACGG 60.956 55.000 0.00 0.00 0.00 4.44
4537 4663 4.609995 CGGAGTACCACGCCATTT 57.390 55.556 0.06 0.00 38.00 2.32
4545 4671 1.185618 AGTGCTGAAGCGGAGTACCA 61.186 55.000 0.00 0.00 45.83 3.25
4595 4721 3.109928 ACCATCACTCATCTCATGGTCA 58.890 45.455 0.00 0.00 44.84 4.02
4601 4727 2.502947 CCTTGGACCATCACTCATCTCA 59.497 50.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.