Multiple sequence alignment - TraesCS1B01G419300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G419300 chr1B 100.000 3260 0 0 1 3260 642790915 642794174 0.000000e+00 6021
1 TraesCS1B01G419300 chr1B 89.862 1016 59 20 1 987 642989580 642990580 0.000000e+00 1266
2 TraesCS1B01G419300 chr1B 90.782 716 48 15 1193 1902 642802672 642803375 0.000000e+00 941
3 TraesCS1B01G419300 chr1B 94.599 574 28 2 1821 2394 642990583 642991153 0.000000e+00 885
4 TraesCS1B01G419300 chr1B 89.085 623 40 9 2641 3259 481709816 481710414 0.000000e+00 749
5 TraesCS1B01G419300 chr1B 96.172 209 8 0 2434 2642 642795476 642795268 3.110000e-90 342
6 TraesCS1B01G419300 chr1B 86.738 279 28 1 2085 2363 642811150 642811419 5.290000e-78 302
7 TraesCS1B01G419300 chr1B 88.889 198 22 0 1898 2095 642809115 642809312 9.040000e-61 244
8 TraesCS1B01G419300 chr1A 89.289 2166 147 36 272 2397 558320650 558322770 0.000000e+00 2636
9 TraesCS1B01G419300 chr1A 92.456 623 44 2 2641 3260 459272427 459273049 0.000000e+00 887
10 TraesCS1B01G419300 chr1A 88.889 153 14 3 109 259 8091168 8091319 5.550000e-43 185
11 TraesCS1B01G419300 chr1D 89.362 2115 126 43 343 2397 465978101 465980176 0.000000e+00 2567
12 TraesCS1B01G419300 chr1D 92.445 503 34 3 2638 3136 359722605 359723107 0.000000e+00 715
13 TraesCS1B01G419300 chr1D 95.833 96 3 1 3165 3260 359723101 359723195 1.570000e-33 154
14 TraesCS1B01G419300 chr1D 94.048 84 2 3 272 353 465977999 465978081 1.230000e-24 124
15 TraesCS1B01G419300 chr7B 94.075 827 17 9 2434 3260 380860473 380859679 0.000000e+00 1227
16 TraesCS1B01G419300 chr7B 95.215 209 10 0 2434 2642 380858357 380858565 6.740000e-87 331
17 TraesCS1B01G419300 chr5A 84.263 502 41 23 1031 1527 546208422 546207954 3.830000e-124 455
18 TraesCS1B01G419300 chr5A 89.571 163 13 4 107 267 560594119 560593959 1.530000e-48 204
19 TraesCS1B01G419300 chr5A 88.356 146 15 2 122 266 672016894 672017038 1.200000e-39 174
20 TraesCS1B01G419300 chr2D 93.204 206 14 0 2434 2639 318425027 318424822 1.470000e-78 303
21 TraesCS1B01G419300 chr2D 91.628 215 12 3 2434 2642 129787236 129787022 3.180000e-75 292
22 TraesCS1B01G419300 chr7D 92.381 210 14 2 2434 2642 488615819 488616027 6.840000e-77 298
23 TraesCS1B01G419300 chr7D 91.429 210 18 0 2433 2642 488633561 488633352 4.120000e-74 289
24 TraesCS1B01G419300 chr7D 84.211 228 29 3 1552 1779 37427962 37427742 7.080000e-52 215
25 TraesCS1B01G419300 chr4A 92.718 206 15 0 2434 2639 671016596 671016801 6.840000e-77 298
26 TraesCS1B01G419300 chr4B 91.748 206 16 1 2438 2642 608946026 608946231 5.320000e-73 285
27 TraesCS1B01G419300 chr4B 85.625 160 6 2 109 267 172375747 172375604 5.630000e-33 152
28 TraesCS1B01G419300 chr3B 88.820 161 17 1 108 267 813332428 813332588 2.570000e-46 196
29 TraesCS1B01G419300 chr6B 87.654 162 19 1 109 269 416898732 416898893 1.540000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G419300 chr1B 642790915 642794174 3259 False 6021.0 6021 100.0000 1 3260 1 chr1B.!!$F2 3259
1 TraesCS1B01G419300 chr1B 642989580 642991153 1573 False 1075.5 1266 92.2305 1 2394 2 chr1B.!!$F5 2393
2 TraesCS1B01G419300 chr1B 642802672 642803375 703 False 941.0 941 90.7820 1193 1902 1 chr1B.!!$F3 709
3 TraesCS1B01G419300 chr1B 481709816 481710414 598 False 749.0 749 89.0850 2641 3259 1 chr1B.!!$F1 618
4 TraesCS1B01G419300 chr1B 642809115 642811419 2304 False 273.0 302 87.8135 1898 2363 2 chr1B.!!$F4 465
5 TraesCS1B01G419300 chr1A 558320650 558322770 2120 False 2636.0 2636 89.2890 272 2397 1 chr1A.!!$F3 2125
6 TraesCS1B01G419300 chr1A 459272427 459273049 622 False 887.0 887 92.4560 2641 3260 1 chr1A.!!$F2 619
7 TraesCS1B01G419300 chr1D 465977999 465980176 2177 False 1345.5 2567 91.7050 272 2397 2 chr1D.!!$F2 2125
8 TraesCS1B01G419300 chr1D 359722605 359723195 590 False 434.5 715 94.1390 2638 3260 2 chr1D.!!$F1 622
9 TraesCS1B01G419300 chr7B 380859679 380860473 794 True 1227.0 1227 94.0750 2434 3260 1 chr7B.!!$R1 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 134 0.163146 GTGGCGAGCTACGTTGAAAC 59.837 55.000 0.00 0.0 44.6 2.78 F
459 503 1.134367 TGAGATTTCGCGAGTGGTAGG 59.866 52.381 9.59 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1152 1.092921 CGAGTGTCGGAGAGAGGAGG 61.093 65.0 0.0 0.0 36.95 4.30 R
2431 4415 0.102120 CTCTAGTGCTCTTGCCTCCG 59.898 60.0 0.0 0.0 38.71 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 114 1.039068 TTGAATGTTGTGGTGGGCAG 58.961 50.000 0.00 0.00 0.00 4.85
129 134 0.163146 GTGGCGAGCTACGTTGAAAC 59.837 55.000 0.00 0.00 44.60 2.78
214 219 3.686726 CCATGCGGATAGAAATCTTAGGC 59.313 47.826 0.00 0.00 32.29 3.93
232 237 1.272490 GGCTTAACCTTCAGTTTGGCC 59.728 52.381 0.00 0.00 42.99 5.36
259 264 4.693566 CCAACTTATTTGTTGTAGCTCCGA 59.306 41.667 0.00 0.00 44.01 4.55
353 393 4.219070 TGAGCAAAGATCAAAACCAGATGG 59.781 41.667 0.00 0.00 42.17 3.51
358 398 2.489329 AGATCAAAACCAGATGGCAACG 59.511 45.455 0.00 0.00 39.32 4.10
366 406 1.675641 AGATGGCAACGGCTTGGTC 60.676 57.895 0.00 0.00 40.87 4.02
459 503 1.134367 TGAGATTTCGCGAGTGGTAGG 59.866 52.381 9.59 0.00 0.00 3.18
472 521 4.322049 CGAGTGGTAGGAGAACAAGATTGT 60.322 45.833 0.00 0.00 44.72 2.71
492 541 2.121291 TGGATCTAAAACATGCGCCA 57.879 45.000 4.18 0.00 0.00 5.69
495 544 3.446873 TGGATCTAAAACATGCGCCAAAT 59.553 39.130 4.18 0.00 0.00 2.32
518 567 2.358737 CGCCTTTGAAGCCCGACT 60.359 61.111 0.00 0.00 0.00 4.18
574 623 2.230994 GACGAGCCAGATGGAGCACA 62.231 60.000 2.18 0.00 37.39 4.57
632 681 2.177518 TCACCCCCAGAGGAGAGGT 61.178 63.158 0.00 0.00 38.24 3.85
784 833 5.058490 TGTACTAAAAGTTTAGGCACGCTT 58.942 37.500 13.85 0.00 43.38 4.68
1001 1080 1.262151 CGGTTTGGTTTGAACGACGAT 59.738 47.619 0.00 0.00 0.00 3.73
1006 1085 1.269154 TGGTTTGAACGACGATGACGA 60.269 47.619 0.00 0.00 42.66 4.20
1065 1152 1.744114 GCTTTCCAACTCCGATCCCTC 60.744 57.143 0.00 0.00 0.00 4.30
1069 1156 1.403687 CCAACTCCGATCCCTCCTCC 61.404 65.000 0.00 0.00 0.00 4.30
1141 1233 2.435586 CTCCTGTCCTTGCCTGCG 60.436 66.667 0.00 0.00 0.00 5.18
1165 1257 3.435262 CGCTAAAGACGGAACAAGAAC 57.565 47.619 0.00 0.00 0.00 3.01
1166 1258 2.160013 CGCTAAAGACGGAACAAGAACG 60.160 50.000 0.00 0.00 0.00 3.95
1167 1259 2.157085 GCTAAAGACGGAACAAGAACGG 59.843 50.000 0.00 0.00 0.00 4.44
1168 1260 1.589803 AAAGACGGAACAAGAACGGG 58.410 50.000 0.00 0.00 0.00 5.28
1169 1261 0.883370 AAGACGGAACAAGAACGGGC 60.883 55.000 0.00 0.00 0.00 6.13
1170 1262 2.281276 ACGGAACAAGAACGGGCC 60.281 61.111 0.00 0.00 0.00 5.80
1353 1448 0.393537 CTGGCATGGACAAGGAGGAC 60.394 60.000 0.00 0.00 0.00 3.85
1355 1450 1.450312 GCATGGACAAGGAGGACGG 60.450 63.158 0.00 0.00 0.00 4.79
1401 1508 4.459089 GAGTGGCTGGCCGACCTC 62.459 72.222 14.49 10.99 39.42 3.85
1861 1995 3.138930 GACGGCCATCAGCGCTCTA 62.139 63.158 7.13 0.00 45.17 2.43
2356 4340 9.717942 ATTTGTAGCTAGATTATGGTGAAGATC 57.282 33.333 0.00 0.00 0.00 2.75
2397 4381 7.160547 ACTTTTAGACAAGCTAGGTACTCTC 57.839 40.000 0.00 0.00 41.75 3.20
2398 4382 6.949463 ACTTTTAGACAAGCTAGGTACTCTCT 59.051 38.462 0.00 0.00 41.75 3.10
2399 4383 7.121611 ACTTTTAGACAAGCTAGGTACTCTCTC 59.878 40.741 0.00 0.00 41.75 3.20
2400 4384 4.855298 AGACAAGCTAGGTACTCTCTCT 57.145 45.455 0.00 0.00 41.75 3.10
2401 4385 5.187621 AGACAAGCTAGGTACTCTCTCTT 57.812 43.478 0.00 0.00 41.75 2.85
2402 4386 5.576128 AGACAAGCTAGGTACTCTCTCTTT 58.424 41.667 0.00 0.00 41.75 2.52
2403 4387 6.014012 AGACAAGCTAGGTACTCTCTCTTTT 58.986 40.000 0.00 0.00 41.75 2.27
2404 4388 6.495526 AGACAAGCTAGGTACTCTCTCTTTTT 59.504 38.462 0.00 0.00 41.75 1.94
2423 4407 3.680777 TTTTGGGAGGGAAAACAGAGT 57.319 42.857 0.00 0.00 0.00 3.24
2424 4408 3.680777 TTTGGGAGGGAAAACAGAGTT 57.319 42.857 0.00 0.00 0.00 3.01
2425 4409 3.680777 TTGGGAGGGAAAACAGAGTTT 57.319 42.857 0.00 0.00 0.00 2.66
2426 4410 3.680777 TGGGAGGGAAAACAGAGTTTT 57.319 42.857 7.51 7.51 0.00 2.43
2427 4411 4.799715 TGGGAGGGAAAACAGAGTTTTA 57.200 40.909 7.75 0.00 0.00 1.52
2428 4412 5.333566 TGGGAGGGAAAACAGAGTTTTAT 57.666 39.130 7.75 0.00 0.00 1.40
2429 4413 5.711698 TGGGAGGGAAAACAGAGTTTTATT 58.288 37.500 7.75 0.00 0.00 1.40
2430 4414 5.773176 TGGGAGGGAAAACAGAGTTTTATTC 59.227 40.000 7.75 6.36 0.00 1.75
2431 4415 5.185249 GGGAGGGAAAACAGAGTTTTATTCC 59.815 44.000 7.75 12.95 36.45 3.01
2432 4416 5.106277 GGAGGGAAAACAGAGTTTTATTCCG 60.106 44.000 7.75 0.00 37.73 4.30
2485 4469 3.181510 GCGTTGGATGTGATGGTTTAGTC 60.182 47.826 0.00 0.00 0.00 2.59
2486 4470 4.253685 CGTTGGATGTGATGGTTTAGTCT 58.746 43.478 0.00 0.00 0.00 3.24
2495 4479 7.962964 TGTGATGGTTTAGTCTAGAAACTTG 57.037 36.000 0.00 0.00 37.05 3.16
2496 4480 6.426937 TGTGATGGTTTAGTCTAGAAACTTGC 59.573 38.462 0.00 0.00 37.05 4.01
2510 4494 8.292448 TCTAGAAACTTGCAAAAGATGATCAAC 58.708 33.333 0.00 0.00 0.00 3.18
2511 4495 6.218746 AGAAACTTGCAAAAGATGATCAACC 58.781 36.000 0.00 0.00 0.00 3.77
2534 4518 6.440328 ACCCATCCATAAACTTGCAAACTATT 59.560 34.615 0.00 0.00 0.00 1.73
2611 4595 3.936203 TGGCACACCTGGTCGGAC 61.936 66.667 0.00 0.00 36.63 4.79
2612 4596 4.699522 GGCACACCTGGTCGGACC 62.700 72.222 20.36 20.36 39.22 4.46
2614 4598 4.373116 CACACCTGGTCGGACCGG 62.373 72.222 26.06 26.06 42.58 5.28
2705 4689 7.362662 TCAATATGACACTGAAAAAGCAAGTC 58.637 34.615 0.00 0.00 0.00 3.01
2706 4690 6.882610 ATATGACACTGAAAAAGCAAGTCA 57.117 33.333 0.00 0.00 38.82 3.41
2707 4691 4.621068 TGACACTGAAAAAGCAAGTCAG 57.379 40.909 5.47 5.47 43.61 3.51
2714 4698 5.574891 TGAAAAAGCAAGTCAGTTTAGCA 57.425 34.783 0.00 0.00 0.00 3.49
2715 4699 6.147864 TGAAAAAGCAAGTCAGTTTAGCAT 57.852 33.333 0.00 0.00 0.00 3.79
2716 4700 6.208644 TGAAAAAGCAAGTCAGTTTAGCATC 58.791 36.000 0.00 0.00 0.00 3.91
2717 4701 6.039717 TGAAAAAGCAAGTCAGTTTAGCATCT 59.960 34.615 0.00 0.00 0.00 2.90
2718 4702 6.396829 AAAAGCAAGTCAGTTTAGCATCTT 57.603 33.333 0.00 0.00 0.00 2.40
2719 4703 6.396829 AAAGCAAGTCAGTTTAGCATCTTT 57.603 33.333 0.00 0.00 0.00 2.52
2720 4704 7.510549 AAAGCAAGTCAGTTTAGCATCTTTA 57.489 32.000 0.00 0.00 0.00 1.85
2721 4705 6.487689 AGCAAGTCAGTTTAGCATCTTTAC 57.512 37.500 0.00 0.00 0.00 2.01
2722 4706 5.412904 AGCAAGTCAGTTTAGCATCTTTACC 59.587 40.000 0.00 0.00 0.00 2.85
2723 4707 5.412904 GCAAGTCAGTTTAGCATCTTTACCT 59.587 40.000 0.00 0.00 0.00 3.08
2724 4708 6.402658 GCAAGTCAGTTTAGCATCTTTACCTC 60.403 42.308 0.00 0.00 0.00 3.85
2725 4709 5.735766 AGTCAGTTTAGCATCTTTACCTCC 58.264 41.667 0.00 0.00 0.00 4.30
2726 4710 5.248477 AGTCAGTTTAGCATCTTTACCTCCA 59.752 40.000 0.00 0.00 0.00 3.86
2727 4711 5.582665 GTCAGTTTAGCATCTTTACCTCCAG 59.417 44.000 0.00 0.00 0.00 3.86
2728 4712 5.483937 TCAGTTTAGCATCTTTACCTCCAGA 59.516 40.000 0.00 0.00 0.00 3.86
2729 4713 5.814705 CAGTTTAGCATCTTTACCTCCAGAG 59.185 44.000 0.00 0.00 0.00 3.35
2730 4714 5.721960 AGTTTAGCATCTTTACCTCCAGAGA 59.278 40.000 0.00 0.00 0.00 3.10
2731 4715 5.599999 TTAGCATCTTTACCTCCAGAGAC 57.400 43.478 0.00 0.00 0.00 3.36
2749 4760 6.830838 CCAGAGACCAGGCTTTAATAGATTTT 59.169 38.462 0.00 0.00 0.00 1.82
2781 4792 4.049186 CCAGTATAAAGATGACCGGTTCG 58.951 47.826 9.42 0.00 0.00 3.95
2789 4800 3.021695 AGATGACCGGTTCGAGATACAA 58.978 45.455 9.42 0.00 0.00 2.41
2916 4927 4.250464 CCACTGTCTCCGCTTATACAAAA 58.750 43.478 0.00 0.00 0.00 2.44
3107 5122 9.119418 TGATTTCTCACTACAAGAAAAACATGA 57.881 29.630 0.00 0.00 43.76 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 114 0.163146 GTTTCAACGTAGCTCGCCAC 59.837 55.000 0.00 0.00 44.19 5.01
187 192 0.249868 TTTCTATCCGCATGGCCGAG 60.250 55.000 0.00 0.00 34.14 4.63
189 194 0.798776 GATTTCTATCCGCATGGCCG 59.201 55.000 0.00 0.00 34.14 6.13
214 219 2.296190 GTGGGCCAAACTGAAGGTTAAG 59.704 50.000 8.40 0.00 37.12 1.85
259 264 4.401022 CAATCATGCATACCCACCAGTAT 58.599 43.478 0.00 0.00 33.10 2.12
353 393 1.519408 TCTTTAGACCAAGCCGTTGC 58.481 50.000 0.00 0.00 37.95 4.17
358 398 4.080863 TCCTCTTGATCTTTAGACCAAGCC 60.081 45.833 8.70 0.00 36.77 4.35
472 521 2.441410 TGGCGCATGTTTTAGATCCAA 58.559 42.857 10.83 0.00 0.00 3.53
492 541 1.541588 GCTTCAAAGGCGAGTCCATTT 59.458 47.619 0.00 0.00 37.29 2.32
495 544 1.302511 GGCTTCAAAGGCGAGTCCA 60.303 57.895 0.17 0.00 41.93 4.02
518 567 4.819105 ATGTCGGTTCAACTTCATCCTA 57.181 40.909 0.00 0.00 0.00 2.94
588 637 3.179265 CGGTCGACATCCGTGTGC 61.179 66.667 18.91 0.00 42.62 4.57
643 692 4.030452 GACAACTGCTGCCGTGCC 62.030 66.667 0.00 0.00 0.00 5.01
644 693 4.030452 GGACAACTGCTGCCGTGC 62.030 66.667 0.00 0.00 0.00 5.34
645 694 1.968017 ATGGACAACTGCTGCCGTG 60.968 57.895 0.00 0.00 0.00 4.94
646 695 1.968017 CATGGACAACTGCTGCCGT 60.968 57.895 0.00 0.00 0.00 5.68
763 812 6.622833 AAAAGCGTGCCTAAACTTTTAGTA 57.377 33.333 7.74 0.00 39.78 1.82
764 813 5.509716 AAAAGCGTGCCTAAACTTTTAGT 57.490 34.783 7.74 0.00 39.78 2.24
916 966 8.974060 TCCAGTTTTGTTACTTACTCTTTCAT 57.026 30.769 0.00 0.00 0.00 2.57
981 1047 0.651551 TCGTCGTTCAAACCAAACCG 59.348 50.000 0.00 0.00 0.00 4.44
1001 1080 2.467946 GAAAGAGCCGTCCGTCGTCA 62.468 60.000 0.00 0.00 37.94 4.35
1006 1085 1.292541 GAAGGAAAGAGCCGTCCGT 59.707 57.895 0.00 0.00 39.06 4.69
1015 1094 4.753186 AGTAGAGACCAAGGAAGGAAAGA 58.247 43.478 0.00 0.00 0.00 2.52
1065 1152 1.092921 CGAGTGTCGGAGAGAGGAGG 61.093 65.000 0.00 0.00 36.95 4.30
1153 1245 2.281276 GGCCCGTTCTTGTTCCGT 60.281 61.111 0.00 0.00 0.00 4.69
1156 1248 3.053896 CCCGGCCCGTTCTTGTTC 61.054 66.667 0.85 0.00 0.00 3.18
1851 1985 4.753662 ACCCGGGTAGAGCGCTGA 62.754 66.667 29.13 0.00 0.00 4.26
1890 2024 2.758327 TCGGGGCTCATGTACGCT 60.758 61.111 0.00 0.00 0.00 5.07
2234 4216 7.993758 CCTATATGGTCTCCACGATAATCTCTA 59.006 40.741 0.00 0.00 35.80 2.43
2356 4340 8.286097 GTCTAAAAGTTCAGGTTGATGAAAGAG 58.714 37.037 0.00 0.00 40.72 2.85
2402 4386 3.989056 ACTCTGTTTTCCCTCCCAAAAA 58.011 40.909 0.00 0.00 0.00 1.94
2403 4387 3.680777 ACTCTGTTTTCCCTCCCAAAA 57.319 42.857 0.00 0.00 0.00 2.44
2404 4388 3.680777 AACTCTGTTTTCCCTCCCAAA 57.319 42.857 0.00 0.00 0.00 3.28
2405 4389 3.680777 AAACTCTGTTTTCCCTCCCAA 57.319 42.857 0.00 0.00 0.00 4.12
2406 4390 3.680777 AAAACTCTGTTTTCCCTCCCA 57.319 42.857 2.97 0.00 0.00 4.37
2407 4391 5.185249 GGAATAAAACTCTGTTTTCCCTCCC 59.815 44.000 11.05 4.99 0.00 4.30
2408 4392 5.106277 CGGAATAAAACTCTGTTTTCCCTCC 60.106 44.000 11.05 13.06 0.00 4.30
2409 4393 5.106277 CCGGAATAAAACTCTGTTTTCCCTC 60.106 44.000 11.05 7.23 0.00 4.30
2410 4394 4.765339 CCGGAATAAAACTCTGTTTTCCCT 59.235 41.667 11.05 0.00 0.00 4.20
2411 4395 4.763279 TCCGGAATAAAACTCTGTTTTCCC 59.237 41.667 0.00 10.20 0.00 3.97
2412 4396 5.106277 CCTCCGGAATAAAACTCTGTTTTCC 60.106 44.000 5.23 6.92 0.00 3.13
2413 4397 5.619309 GCCTCCGGAATAAAACTCTGTTTTC 60.619 44.000 5.23 0.00 0.00 2.29
2414 4398 4.217767 GCCTCCGGAATAAAACTCTGTTTT 59.782 41.667 5.23 12.15 0.00 2.43
2415 4399 3.756963 GCCTCCGGAATAAAACTCTGTTT 59.243 43.478 5.23 0.00 0.00 2.83
2416 4400 3.244770 TGCCTCCGGAATAAAACTCTGTT 60.245 43.478 5.23 0.00 0.00 3.16
2417 4401 2.304761 TGCCTCCGGAATAAAACTCTGT 59.695 45.455 5.23 0.00 0.00 3.41
2418 4402 2.985896 TGCCTCCGGAATAAAACTCTG 58.014 47.619 5.23 0.00 0.00 3.35
2419 4403 3.263425 TCTTGCCTCCGGAATAAAACTCT 59.737 43.478 5.23 0.00 0.00 3.24
2420 4404 3.606687 TCTTGCCTCCGGAATAAAACTC 58.393 45.455 5.23 0.00 0.00 3.01
2421 4405 3.610911 CTCTTGCCTCCGGAATAAAACT 58.389 45.455 5.23 0.00 0.00 2.66
2422 4406 2.097629 GCTCTTGCCTCCGGAATAAAAC 59.902 50.000 5.23 0.00 0.00 2.43
2423 4407 2.290641 TGCTCTTGCCTCCGGAATAAAA 60.291 45.455 5.23 0.00 38.71 1.52
2424 4408 1.280710 TGCTCTTGCCTCCGGAATAAA 59.719 47.619 5.23 0.00 38.71 1.40
2425 4409 0.908910 TGCTCTTGCCTCCGGAATAA 59.091 50.000 5.23 0.00 38.71 1.40
2426 4410 0.178068 GTGCTCTTGCCTCCGGAATA 59.822 55.000 5.23 0.00 38.71 1.75
2427 4411 1.078143 GTGCTCTTGCCTCCGGAAT 60.078 57.895 5.23 0.00 38.71 3.01
2428 4412 0.902984 TAGTGCTCTTGCCTCCGGAA 60.903 55.000 5.23 0.00 38.71 4.30
2429 4413 1.304962 TAGTGCTCTTGCCTCCGGA 60.305 57.895 2.93 2.93 38.71 5.14
2430 4414 1.142748 CTAGTGCTCTTGCCTCCGG 59.857 63.158 0.00 0.00 38.71 5.14
2431 4415 0.102120 CTCTAGTGCTCTTGCCTCCG 59.898 60.000 0.00 0.00 38.71 4.63
2432 4416 1.136110 GTCTCTAGTGCTCTTGCCTCC 59.864 57.143 0.00 0.00 38.71 4.30
2485 4469 7.540055 GGTTGATCATCTTTTGCAAGTTTCTAG 59.460 37.037 0.00 0.00 0.00 2.43
2486 4470 7.370383 GGTTGATCATCTTTTGCAAGTTTCTA 58.630 34.615 0.00 0.00 0.00 2.10
2495 4479 3.448301 TGGATGGGTTGATCATCTTTTGC 59.552 43.478 0.00 0.00 40.44 3.68
2496 4480 5.864418 ATGGATGGGTTGATCATCTTTTG 57.136 39.130 0.00 0.00 40.44 2.44
2510 4494 4.806640 AGTTTGCAAGTTTATGGATGGG 57.193 40.909 0.00 0.00 0.00 4.00
2511 4495 8.034215 TCAAATAGTTTGCAAGTTTATGGATGG 58.966 33.333 0.00 0.00 40.43 3.51
2625 4609 7.754851 TTATAGACAAAGTTGAGGGGTTTTC 57.245 36.000 0.00 0.00 0.00 2.29
2705 4689 5.734720 TCTGGAGGTAAAGATGCTAAACTG 58.265 41.667 0.00 0.00 0.00 3.16
2706 4690 5.721960 TCTCTGGAGGTAAAGATGCTAAACT 59.278 40.000 0.00 0.00 0.00 2.66
2707 4691 5.813157 GTCTCTGGAGGTAAAGATGCTAAAC 59.187 44.000 0.00 0.00 0.00 2.01
2708 4692 5.104900 GGTCTCTGGAGGTAAAGATGCTAAA 60.105 44.000 0.00 0.00 0.00 1.85
2709 4693 4.406003 GGTCTCTGGAGGTAAAGATGCTAA 59.594 45.833 0.00 0.00 0.00 3.09
2710 4694 3.961408 GGTCTCTGGAGGTAAAGATGCTA 59.039 47.826 0.00 0.00 0.00 3.49
2711 4695 2.769095 GGTCTCTGGAGGTAAAGATGCT 59.231 50.000 0.00 0.00 0.00 3.79
2712 4696 2.501723 TGGTCTCTGGAGGTAAAGATGC 59.498 50.000 0.00 0.00 0.00 3.91
2713 4697 3.133721 CCTGGTCTCTGGAGGTAAAGATG 59.866 52.174 0.00 0.00 34.32 2.90
2714 4698 3.379452 CCTGGTCTCTGGAGGTAAAGAT 58.621 50.000 0.00 0.00 34.32 2.40
2715 4699 2.821437 CCTGGTCTCTGGAGGTAAAGA 58.179 52.381 0.00 0.00 34.32 2.52
2716 4700 1.208293 GCCTGGTCTCTGGAGGTAAAG 59.792 57.143 0.00 0.00 34.32 1.85
2717 4701 1.203313 AGCCTGGTCTCTGGAGGTAAA 60.203 52.381 0.00 0.00 34.32 2.01
2718 4702 0.413832 AGCCTGGTCTCTGGAGGTAA 59.586 55.000 0.00 0.00 34.32 2.85
2719 4703 0.413832 AAGCCTGGTCTCTGGAGGTA 59.586 55.000 0.00 0.00 34.32 3.08
2720 4704 0.474660 AAAGCCTGGTCTCTGGAGGT 60.475 55.000 0.00 0.00 34.32 3.85
2721 4705 1.573108 TAAAGCCTGGTCTCTGGAGG 58.427 55.000 0.00 0.00 34.32 4.30
2722 4706 3.922171 ATTAAAGCCTGGTCTCTGGAG 57.078 47.619 0.00 0.00 34.32 3.86
2723 4707 4.620723 TCTATTAAAGCCTGGTCTCTGGA 58.379 43.478 0.00 0.00 34.32 3.86
2724 4708 5.559148 ATCTATTAAAGCCTGGTCTCTGG 57.441 43.478 0.00 0.00 35.38 3.86
2725 4709 7.872113 AAAATCTATTAAAGCCTGGTCTCTG 57.128 36.000 0.00 0.00 0.00 3.35
2726 4710 8.332487 AGAAAAATCTATTAAAGCCTGGTCTCT 58.668 33.333 0.00 0.00 0.00 3.10
2727 4711 8.512966 AGAAAAATCTATTAAAGCCTGGTCTC 57.487 34.615 0.00 0.00 0.00 3.36
2728 4712 8.332487 AGAGAAAAATCTATTAAAGCCTGGTCT 58.668 33.333 0.00 0.00 0.00 3.85
2729 4713 8.512966 AGAGAAAAATCTATTAAAGCCTGGTC 57.487 34.615 0.00 0.00 0.00 4.02
2730 4714 9.397280 GTAGAGAAAAATCTATTAAAGCCTGGT 57.603 33.333 0.00 0.00 34.41 4.00
2731 4715 8.552034 CGTAGAGAAAAATCTATTAAAGCCTGG 58.448 37.037 0.00 0.00 34.41 4.45
2749 4760 7.013083 GGTCATCTTTATACTGGTCGTAGAGAA 59.987 40.741 0.00 0.00 36.95 2.87
2781 4792 5.277828 GGTGTTCACTGTTTGGTTGTATCTC 60.278 44.000 2.98 0.00 0.00 2.75
2789 4800 0.750182 CGGGGTGTTCACTGTTTGGT 60.750 55.000 2.98 0.00 0.00 3.67
2916 4927 6.061441 TGTGTTGACAATGATAACCAGTCTT 58.939 36.000 0.00 0.00 0.00 3.01
3107 5122 9.234827 TGTGAGTGTCATTCTTGAAATGAATAT 57.765 29.630 2.25 0.00 38.49 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.