Multiple sequence alignment - TraesCS1B01G419000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G419000 chr1B 100.000 5007 0 0 1 5007 642636138 642641144 0.000000e+00 9247
1 TraesCS1B01G419000 chr1B 97.632 760 13 1 1 755 37907886 37908645 0.000000e+00 1299
2 TraesCS1B01G419000 chr1B 84.559 544 56 17 842 1370 642526820 642527350 9.610000e-142 514
3 TraesCS1B01G419000 chr1B 79.012 486 87 13 3529 4009 642620040 642620515 8.090000e-83 318
4 TraesCS1B01G419000 chr1B 93.151 73 5 0 1009 1081 637368589 637368661 1.910000e-19 108
5 TraesCS1B01G419000 chr1D 92.376 1456 78 16 2701 4149 465821304 465822733 0.000000e+00 2043
6 TraesCS1B01G419000 chr1D 88.222 866 69 14 4140 4980 465823146 465824003 0.000000e+00 1003
7 TraesCS1B01G419000 chr1D 84.227 653 66 20 754 1395 465820626 465821252 7.170000e-168 601
8 TraesCS1B01G419000 chr1D 90.099 404 40 0 961 1364 465812104 465812507 4.440000e-145 525
9 TraesCS1B01G419000 chr1D 93.151 73 5 0 1009 1081 462298737 462298809 1.910000e-19 108
10 TraesCS1B01G419000 chr1A 93.612 1362 67 12 2664 4013 558148764 558150117 0.000000e+00 2015
11 TraesCS1B01G419000 chr1A 91.796 451 28 5 929 1370 558130353 558130803 1.980000e-173 619
12 TraesCS1B01G419000 chr1A 86.334 461 41 12 971 1421 558148109 558148557 2.710000e-132 483
13 TraesCS1B01G419000 chr1A 90.746 335 29 1 4012 4346 558150200 558150532 3.560000e-121 446
14 TraesCS1B01G419000 chr1A 76.733 851 140 33 3203 4009 558131599 558132435 5.990000e-114 422
15 TraesCS1B01G419000 chr1A 85.185 216 17 7 754 967 558147761 558147963 1.830000e-49 207
16 TraesCS1B01G419000 chrUn 97.754 757 15 1 1 757 183152588 183151834 0.000000e+00 1303
17 TraesCS1B01G419000 chrUn 97.361 758 17 2 1 755 76279233 76279990 0.000000e+00 1286
18 TraesCS1B01G419000 chrUn 78.404 639 99 25 1650 2283 268466029 268465425 3.660000e-101 379
19 TraesCS1B01G419000 chrUn 83.744 203 30 3 1650 1850 342543665 342543866 6.620000e-44 189
20 TraesCS1B01G419000 chr2B 97.632 760 15 2 1 758 689119412 689120170 0.000000e+00 1301
21 TraesCS1B01G419000 chr2B 98.278 697 12 0 1 697 394384049 394384745 0.000000e+00 1221
22 TraesCS1B01G419000 chr2B 87.007 431 30 6 1 405 106728417 106728847 3.530000e-126 462
23 TraesCS1B01G419000 chr2B 75.660 341 54 19 434 754 767460566 767460897 5.230000e-30 143
24 TraesCS1B01G419000 chr3B 97.487 756 17 1 1 754 825997735 825996980 0.000000e+00 1290
25 TraesCS1B01G419000 chr3B 98.036 662 11 2 93 754 11204499 11205158 0.000000e+00 1149
26 TraesCS1B01G419000 chr3B 83.333 960 113 20 1655 2578 3613319 3612371 0.000000e+00 843
27 TraesCS1B01G419000 chr3B 87.447 709 68 13 1885 2579 823589013 823588312 0.000000e+00 797
28 TraesCS1B01G419000 chr3B 80.602 665 92 23 1648 2284 783878401 783879056 3.510000e-131 479
29 TraesCS1B01G419000 chr3B 95.890 73 3 0 1009 1081 673098168 673098096 8.810000e-23 119
30 TraesCS1B01G419000 chr5B 96.978 761 16 2 1 754 508040224 508039464 0.000000e+00 1271
31 TraesCS1B01G419000 chr5B 83.929 952 118 23 1650 2579 711938232 711939170 0.000000e+00 878
32 TraesCS1B01G419000 chr5B 89.323 665 63 7 1915 2578 663120786 663121443 0.000000e+00 828
33 TraesCS1B01G419000 chr5B 83.051 944 116 25 1670 2579 590393858 590394791 0.000000e+00 817
34 TraesCS1B01G419000 chr5B 80.347 346 46 12 1666 1996 549770177 549770515 5.010000e-60 243
35 TraesCS1B01G419000 chr6B 95.331 664 26 4 93 754 9707011 9707671 0.000000e+00 1050
36 TraesCS1B01G419000 chr7B 83.682 956 119 20 1648 2578 400835673 400834730 0.000000e+00 867
37 TraesCS1B01G419000 chr7B 87.088 697 73 13 1887 2578 425361056 425360372 0.000000e+00 773
38 TraesCS1B01G419000 chr7B 82.957 399 52 10 1644 2030 651454847 651455241 3.710000e-91 346
39 TraesCS1B01G419000 chr5D 82.899 959 134 23 1640 2578 362555475 362554527 0.000000e+00 835
40 TraesCS1B01G419000 chr5D 80.934 257 38 5 1657 1902 544787817 544788073 5.120000e-45 193
41 TraesCS1B01G419000 chr5D 94.366 71 4 0 1010 1080 554577396 554577326 5.300000e-20 110
42 TraesCS1B01G419000 chr4B 83.001 953 110 26 1648 2576 472872478 472871554 0.000000e+00 815
43 TraesCS1B01G419000 chr4B 87.123 730 75 15 1855 2578 576749347 576748631 0.000000e+00 809
44 TraesCS1B01G419000 chr4B 80.238 840 86 35 1648 2439 482131261 482130454 4.380000e-155 558
45 TraesCS1B01G419000 chr4D 79.671 669 87 31 1648 2282 488605245 488604592 2.140000e-118 436
46 TraesCS1B01G419000 chr4D 93.750 80 5 0 1009 1088 477089462 477089383 2.450000e-23 121
47 TraesCS1B01G419000 chr4A 77.778 630 80 22 1648 2243 685341057 685341660 2.890000e-87 333
48 TraesCS1B01G419000 chr4A 95.833 72 3 0 1009 1080 614004511 614004582 3.170000e-22 117
49 TraesCS1B01G419000 chr3D 95.890 73 3 0 1009 1081 511444272 511444200 8.810000e-23 119
50 TraesCS1B01G419000 chr3A 95.890 73 3 0 1009 1081 647499722 647499650 8.810000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G419000 chr1B 642636138 642641144 5006 False 9247.000000 9247 100.00000 1 5007 1 chr1B.!!$F5 5006
1 TraesCS1B01G419000 chr1B 37907886 37908645 759 False 1299.000000 1299 97.63200 1 755 1 chr1B.!!$F1 754
2 TraesCS1B01G419000 chr1B 642526820 642527350 530 False 514.000000 514 84.55900 842 1370 1 chr1B.!!$F3 528
3 TraesCS1B01G419000 chr1D 465820626 465824003 3377 False 1215.666667 2043 88.27500 754 4980 3 chr1D.!!$F3 4226
4 TraesCS1B01G419000 chr1A 558147761 558150532 2771 False 787.750000 2015 88.96925 754 4346 4 chr1A.!!$F2 3592
5 TraesCS1B01G419000 chr1A 558130353 558132435 2082 False 520.500000 619 84.26450 929 4009 2 chr1A.!!$F1 3080
6 TraesCS1B01G419000 chrUn 183151834 183152588 754 True 1303.000000 1303 97.75400 1 757 1 chrUn.!!$R1 756
7 TraesCS1B01G419000 chrUn 76279233 76279990 757 False 1286.000000 1286 97.36100 1 755 1 chrUn.!!$F1 754
8 TraesCS1B01G419000 chrUn 268465425 268466029 604 True 379.000000 379 78.40400 1650 2283 1 chrUn.!!$R2 633
9 TraesCS1B01G419000 chr2B 689119412 689120170 758 False 1301.000000 1301 97.63200 1 758 1 chr2B.!!$F3 757
10 TraesCS1B01G419000 chr2B 394384049 394384745 696 False 1221.000000 1221 98.27800 1 697 1 chr2B.!!$F2 696
11 TraesCS1B01G419000 chr3B 825996980 825997735 755 True 1290.000000 1290 97.48700 1 754 1 chr3B.!!$R4 753
12 TraesCS1B01G419000 chr3B 11204499 11205158 659 False 1149.000000 1149 98.03600 93 754 1 chr3B.!!$F1 661
13 TraesCS1B01G419000 chr3B 3612371 3613319 948 True 843.000000 843 83.33300 1655 2578 1 chr3B.!!$R1 923
14 TraesCS1B01G419000 chr3B 823588312 823589013 701 True 797.000000 797 87.44700 1885 2579 1 chr3B.!!$R3 694
15 TraesCS1B01G419000 chr3B 783878401 783879056 655 False 479.000000 479 80.60200 1648 2284 1 chr3B.!!$F2 636
16 TraesCS1B01G419000 chr5B 508039464 508040224 760 True 1271.000000 1271 96.97800 1 754 1 chr5B.!!$R1 753
17 TraesCS1B01G419000 chr5B 711938232 711939170 938 False 878.000000 878 83.92900 1650 2579 1 chr5B.!!$F4 929
18 TraesCS1B01G419000 chr5B 663120786 663121443 657 False 828.000000 828 89.32300 1915 2578 1 chr5B.!!$F3 663
19 TraesCS1B01G419000 chr5B 590393858 590394791 933 False 817.000000 817 83.05100 1670 2579 1 chr5B.!!$F2 909
20 TraesCS1B01G419000 chr6B 9707011 9707671 660 False 1050.000000 1050 95.33100 93 754 1 chr6B.!!$F1 661
21 TraesCS1B01G419000 chr7B 400834730 400835673 943 True 867.000000 867 83.68200 1648 2578 1 chr7B.!!$R1 930
22 TraesCS1B01G419000 chr7B 425360372 425361056 684 True 773.000000 773 87.08800 1887 2578 1 chr7B.!!$R2 691
23 TraesCS1B01G419000 chr5D 362554527 362555475 948 True 835.000000 835 82.89900 1640 2578 1 chr5D.!!$R1 938
24 TraesCS1B01G419000 chr4B 472871554 472872478 924 True 815.000000 815 83.00100 1648 2576 1 chr4B.!!$R1 928
25 TraesCS1B01G419000 chr4B 576748631 576749347 716 True 809.000000 809 87.12300 1855 2578 1 chr4B.!!$R3 723
26 TraesCS1B01G419000 chr4B 482130454 482131261 807 True 558.000000 558 80.23800 1648 2439 1 chr4B.!!$R2 791
27 TraesCS1B01G419000 chr4D 488604592 488605245 653 True 436.000000 436 79.67100 1648 2282 1 chr4D.!!$R2 634
28 TraesCS1B01G419000 chr4A 685341057 685341660 603 False 333.000000 333 77.77800 1648 2243 1 chr4A.!!$F2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 972 0.027455 ACGCACACACAATCACAACG 59.973 50.0 0.00 0.0 0.0 4.10 F
2495 3210 0.179234 TTCCAGGTTGCGACAAGTGA 59.821 50.0 6.39 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2631 3346 0.031585 GGGTTTGGTCGAGTTTTGCC 59.968 55.0 0.0 0.0 0.0 4.52 R
4330 5791 0.899717 ACATGCATTTCCCGTGGCTT 60.900 50.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
772 782 2.032924 GTGTCTAACACCAGCCAACAAC 59.967 50.000 0.00 0.00 43.05 3.32
815 825 6.041637 TGGCCTGCTCTATAATATTATACCCG 59.958 42.308 10.55 3.25 0.00 5.28
832 844 8.980481 TTATACCCGCTAGTTACTACTTAGTT 57.020 34.615 0.00 0.00 37.73 2.24
833 845 7.888250 ATACCCGCTAGTTACTACTTAGTTT 57.112 36.000 0.00 0.00 37.73 2.66
834 846 8.980481 ATACCCGCTAGTTACTACTTAGTTTA 57.020 34.615 0.00 0.00 37.73 2.01
835 847 7.888250 ACCCGCTAGTTACTACTTAGTTTAT 57.112 36.000 0.00 0.00 37.73 1.40
836 848 8.980481 ACCCGCTAGTTACTACTTAGTTTATA 57.020 34.615 0.00 0.00 37.73 0.98
837 849 8.841300 ACCCGCTAGTTACTACTTAGTTTATAC 58.159 37.037 0.00 0.00 37.73 1.47
838 850 8.840321 CCCGCTAGTTACTACTTAGTTTATACA 58.160 37.037 0.00 0.00 37.73 2.29
839 851 9.875675 CCGCTAGTTACTACTTAGTTTATACAG 57.124 37.037 0.00 0.00 37.73 2.74
840 852 9.875675 CGCTAGTTACTACTTAGTTTATACAGG 57.124 37.037 0.00 0.00 37.73 4.00
900 914 3.000022 GCACCGCTAATTTAAGACTCGTC 60.000 47.826 0.00 0.00 0.00 4.20
908 922 6.183360 GCTAATTTAAGACTCGTCACCTCAAC 60.183 42.308 0.00 0.00 0.00 3.18
909 923 4.659111 TTTAAGACTCGTCACCTCAACA 57.341 40.909 0.00 0.00 0.00 3.33
910 924 4.659111 TTAAGACTCGTCACCTCAACAA 57.341 40.909 0.00 0.00 0.00 2.83
921 935 5.163953 CGTCACCTCAACAACAATGTAGATC 60.164 44.000 0.00 0.00 39.40 2.75
924 938 5.122869 CACCTCAACAACAATGTAGATCTGG 59.877 44.000 5.18 0.00 39.40 3.86
925 939 4.095483 CCTCAACAACAATGTAGATCTGGC 59.905 45.833 5.18 0.00 39.40 4.85
950 965 5.748630 CAGAGTATATGTACGCACACACAAT 59.251 40.000 6.17 0.00 37.54 2.71
951 966 5.977725 AGAGTATATGTACGCACACACAATC 59.022 40.000 6.17 0.00 37.54 2.67
952 967 5.656480 AGTATATGTACGCACACACAATCA 58.344 37.500 0.00 0.00 37.54 2.57
953 968 4.857871 ATATGTACGCACACACAATCAC 57.142 40.909 0.00 0.00 37.54 3.06
954 969 1.941325 TGTACGCACACACAATCACA 58.059 45.000 0.00 0.00 0.00 3.58
955 970 2.280628 TGTACGCACACACAATCACAA 58.719 42.857 0.00 0.00 0.00 3.33
956 971 2.031068 TGTACGCACACACAATCACAAC 59.969 45.455 0.00 0.00 0.00 3.32
957 972 0.027455 ACGCACACACAATCACAACG 59.973 50.000 0.00 0.00 0.00 4.10
975 1140 3.297134 ACGGCATCCTACATCCAATTT 57.703 42.857 0.00 0.00 0.00 1.82
987 1152 2.126502 CAATTTGTCACCGGCGGC 60.127 61.111 28.71 10.89 0.00 6.53
1285 1485 2.016704 CACCGTCTCTGTGTGCGAC 61.017 63.158 0.00 0.00 0.00 5.19
1324 1524 0.908198 GGGTGAAGCTCATGGAGACT 59.092 55.000 0.00 0.00 0.00 3.24
1333 1533 1.480137 CTCATGGAGACTGTCAGGGAC 59.520 57.143 10.88 0.00 0.00 4.46
1370 1570 3.739519 GCTGGACATACTGGTAAGCTCTG 60.740 52.174 0.00 0.00 31.33 3.35
1374 1574 1.765314 CATACTGGTAAGCTCTGGCCT 59.235 52.381 3.32 0.00 39.73 5.19
1375 1575 2.840640 TACTGGTAAGCTCTGGCCTA 57.159 50.000 3.32 0.00 39.73 3.93
1376 1576 1.490574 ACTGGTAAGCTCTGGCCTAG 58.509 55.000 3.32 2.29 39.73 3.02
1385 1585 3.654273 AGCTCTGGCCTAGTAATTACCA 58.346 45.455 12.05 2.01 39.73 3.25
1395 1595 5.008712 GCCTAGTAATTACCATTGGTTGCTC 59.991 44.000 14.78 2.06 37.09 4.26
1406 1606 1.271856 TGGTTGCTCCATCGAGGTAA 58.728 50.000 0.00 0.00 41.93 2.85
1414 1614 4.816385 TGCTCCATCGAGGTAATTTGATTC 59.184 41.667 0.00 0.00 39.02 2.52
1416 1616 5.471456 GCTCCATCGAGGTAATTTGATTCAT 59.529 40.000 0.00 0.00 39.02 2.57
1421 1621 9.616634 CCATCGAGGTAATTTGATTCATTAATG 57.383 33.333 9.29 9.29 0.00 1.90
1430 1758 4.403015 TGATTCATTAATGTATGCCGCG 57.597 40.909 14.97 0.00 0.00 6.46
1495 1827 7.662604 AAACTTCATCATTTGGAGCATTTTC 57.337 32.000 0.00 0.00 33.77 2.29
1505 1837 9.558396 TCATTTGGAGCATTTTCATTTAAACTT 57.442 25.926 0.00 0.00 0.00 2.66
1506 1838 9.601971 CATTTGGAGCATTTTCATTTAAACTTG 57.398 29.630 0.00 0.00 0.00 3.16
1511 1843 6.240145 AGCATTTTCATTTAAACTTGGGCAT 58.760 32.000 0.00 0.00 0.00 4.40
1512 1844 6.716173 AGCATTTTCATTTAAACTTGGGCATT 59.284 30.769 0.00 0.00 0.00 3.56
1513 1845 7.231115 AGCATTTTCATTTAAACTTGGGCATTT 59.769 29.630 0.00 0.00 0.00 2.32
1514 1846 7.538334 GCATTTTCATTTAAACTTGGGCATTTC 59.462 33.333 0.00 0.00 0.00 2.17
1515 1847 8.785946 CATTTTCATTTAAACTTGGGCATTTCT 58.214 29.630 0.00 0.00 0.00 2.52
1516 1848 8.744568 TTTTCATTTAAACTTGGGCATTTCTT 57.255 26.923 0.00 0.00 0.00 2.52
1517 1849 7.727331 TTCATTTAAACTTGGGCATTTCTTG 57.273 32.000 0.00 0.00 0.00 3.02
1518 1850 6.229733 TCATTTAAACTTGGGCATTTCTTGG 58.770 36.000 0.00 0.00 0.00 3.61
1519 1851 4.615588 TTAAACTTGGGCATTTCTTGGG 57.384 40.909 0.00 0.00 0.00 4.12
1520 1852 0.686789 AACTTGGGCATTTCTTGGGC 59.313 50.000 0.00 0.00 0.00 5.36
1524 1856 3.460868 GGCATTTCTTGGGCCGGG 61.461 66.667 2.18 0.00 38.04 5.73
1525 1857 4.147449 GCATTTCTTGGGCCGGGC 62.147 66.667 22.00 22.00 0.00 6.13
1526 1858 2.362889 CATTTCTTGGGCCGGGCT 60.363 61.111 28.80 2.25 0.00 5.19
1527 1859 1.984026 CATTTCTTGGGCCGGGCTT 60.984 57.895 28.80 1.35 0.00 4.35
1528 1860 1.984026 ATTTCTTGGGCCGGGCTTG 60.984 57.895 28.80 17.34 0.00 4.01
1529 1861 4.676951 TTCTTGGGCCGGGCTTGG 62.677 66.667 28.80 16.90 0.00 3.61
1531 1863 4.676951 CTTGGGCCGGGCTTGGAA 62.677 66.667 28.80 14.04 0.00 3.53
1532 1864 4.226095 TTGGGCCGGGCTTGGAAA 62.226 61.111 28.80 11.72 0.00 3.13
1533 1865 3.758133 TTGGGCCGGGCTTGGAAAA 62.758 57.895 28.80 9.96 0.00 2.29
1534 1866 3.381983 GGGCCGGGCTTGGAAAAG 61.382 66.667 28.80 0.00 0.00 2.27
1535 1867 2.600470 GGCCGGGCTTGGAAAAGT 60.600 61.111 22.87 0.00 0.00 2.66
1536 1868 2.636412 GGCCGGGCTTGGAAAAGTC 61.636 63.158 22.87 0.00 0.00 3.01
1537 1869 2.636412 GCCGGGCTTGGAAAAGTCC 61.636 63.158 12.87 0.00 45.21 3.85
1548 1880 3.188159 GGAAAAGTCCAACCCCAAAAC 57.812 47.619 0.00 0.00 44.26 2.43
1549 1881 2.502130 GGAAAAGTCCAACCCCAAAACA 59.498 45.455 0.00 0.00 44.26 2.83
1550 1882 3.135712 GGAAAAGTCCAACCCCAAAACAT 59.864 43.478 0.00 0.00 44.26 2.71
1551 1883 3.836365 AAAGTCCAACCCCAAAACATG 57.164 42.857 0.00 0.00 0.00 3.21
1552 1884 2.765689 AGTCCAACCCCAAAACATGA 57.234 45.000 0.00 0.00 0.00 3.07
1553 1885 3.039252 AGTCCAACCCCAAAACATGAA 57.961 42.857 0.00 0.00 0.00 2.57
1554 1886 2.698274 AGTCCAACCCCAAAACATGAAC 59.302 45.455 0.00 0.00 0.00 3.18
1555 1887 2.043227 TCCAACCCCAAAACATGAACC 58.957 47.619 0.00 0.00 0.00 3.62
1556 1888 1.071542 CCAACCCCAAAACATGAACCC 59.928 52.381 0.00 0.00 0.00 4.11
1557 1889 1.044611 AACCCCAAAACATGAACCCG 58.955 50.000 0.00 0.00 0.00 5.28
1558 1890 0.186386 ACCCCAAAACATGAACCCGA 59.814 50.000 0.00 0.00 0.00 5.14
1559 1891 0.601057 CCCCAAAACATGAACCCGAC 59.399 55.000 0.00 0.00 0.00 4.79
1560 1892 0.601057 CCCAAAACATGAACCCGACC 59.399 55.000 0.00 0.00 0.00 4.79
1561 1893 0.601057 CCAAAACATGAACCCGACCC 59.399 55.000 0.00 0.00 0.00 4.46
1562 1894 0.239879 CAAAACATGAACCCGACCCG 59.760 55.000 0.00 0.00 0.00 5.28
1563 1895 1.520600 AAAACATGAACCCGACCCGC 61.521 55.000 0.00 0.00 0.00 6.13
1564 1896 3.912745 AACATGAACCCGACCCGCC 62.913 63.158 0.00 0.00 0.00 6.13
1565 1897 4.402528 CATGAACCCGACCCGCCA 62.403 66.667 0.00 0.00 0.00 5.69
1566 1898 3.407967 ATGAACCCGACCCGCCAT 61.408 61.111 0.00 0.00 0.00 4.40
1567 1899 3.697439 ATGAACCCGACCCGCCATG 62.697 63.158 0.00 0.00 0.00 3.66
1578 1910 3.369400 CGCCATGGCCGGAAACAA 61.369 61.111 30.79 0.00 37.98 2.83
1579 1911 2.709883 CGCCATGGCCGGAAACAAT 61.710 57.895 30.79 0.00 37.98 2.71
1580 1912 1.596408 GCCATGGCCGGAAACAATT 59.404 52.632 27.24 0.00 34.56 2.32
1581 1913 0.820871 GCCATGGCCGGAAACAATTA 59.179 50.000 27.24 0.00 34.56 1.40
1582 1914 1.205893 GCCATGGCCGGAAACAATTAA 59.794 47.619 27.24 0.00 34.56 1.40
1583 1915 2.354203 GCCATGGCCGGAAACAATTAAA 60.354 45.455 27.24 0.00 34.56 1.52
1584 1916 3.681313 GCCATGGCCGGAAACAATTAAAT 60.681 43.478 27.24 0.00 34.56 1.40
1585 1917 3.870419 CCATGGCCGGAAACAATTAAATG 59.130 43.478 5.05 0.00 0.00 2.32
1586 1918 3.601443 TGGCCGGAAACAATTAAATGG 57.399 42.857 5.05 0.00 0.00 3.16
1587 1919 2.900546 TGGCCGGAAACAATTAAATGGT 59.099 40.909 5.05 0.00 0.00 3.55
1588 1920 3.258228 GGCCGGAAACAATTAAATGGTG 58.742 45.455 5.05 0.00 0.00 4.17
1589 1921 2.670905 GCCGGAAACAATTAAATGGTGC 59.329 45.455 5.05 0.00 0.00 5.01
1590 1922 3.862642 GCCGGAAACAATTAAATGGTGCA 60.863 43.478 5.05 0.00 0.00 4.57
1591 1923 4.502962 CCGGAAACAATTAAATGGTGCAT 58.497 39.130 0.00 0.00 0.00 3.96
1592 1924 4.934602 CCGGAAACAATTAAATGGTGCATT 59.065 37.500 0.00 0.00 35.39 3.56
1593 1925 5.411053 CCGGAAACAATTAAATGGTGCATTT 59.589 36.000 0.00 0.00 44.74 2.32
1594 1926 6.072783 CCGGAAACAATTAAATGGTGCATTTT 60.073 34.615 0.00 0.00 40.60 1.82
1595 1927 7.358830 CGGAAACAATTAAATGGTGCATTTTT 58.641 30.769 0.00 0.00 40.60 1.94
1633 1965 9.796120 ATGGTATTATGTTAATCGTTTTTGGTG 57.204 29.630 0.00 0.00 0.00 4.17
1634 1966 8.794553 TGGTATTATGTTAATCGTTTTTGGTGT 58.205 29.630 0.00 0.00 0.00 4.16
1639 1971 9.991388 TTATGTTAATCGTTTTTGGTGTATAGC 57.009 29.630 0.00 0.00 0.00 2.97
1640 1972 7.675962 TGTTAATCGTTTTTGGTGTATAGCT 57.324 32.000 0.00 0.00 0.00 3.32
1641 1973 8.774890 TGTTAATCGTTTTTGGTGTATAGCTA 57.225 30.769 0.00 0.00 0.00 3.32
1642 1974 9.386010 TGTTAATCGTTTTTGGTGTATAGCTAT 57.614 29.630 11.77 11.77 0.00 2.97
1676 2008 7.829211 AGCAACTAATTAATAAGTGCTCCTTCA 59.171 33.333 9.03 0.00 34.46 3.02
1677 2009 7.910683 GCAACTAATTAATAAGTGCTCCTTCAC 59.089 37.037 0.00 0.00 34.46 3.18
1705 2037 1.199789 GCAATGATCAACGCCACTTGA 59.800 47.619 0.00 0.00 34.65 3.02
1903 2418 0.578211 TTTTCGCGAAAGTCACGGTC 59.422 50.000 30.60 0.00 0.00 4.79
2352 3065 7.745620 AGAAACTTCGTCAAAACCTATCAAT 57.254 32.000 0.00 0.00 0.00 2.57
2382 3095 7.810759 GGATCTAGTTTTGAAGATCTCGATACC 59.189 40.741 11.05 0.00 37.77 2.73
2434 3147 1.066136 GGACGCACGGTTTAAGAGAC 58.934 55.000 0.00 0.00 0.00 3.36
2495 3210 0.179234 TTCCAGGTTGCGACAAGTGA 59.821 50.000 6.39 0.00 0.00 3.41
2530 3245 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
2579 3294 4.756502 ACTCCTTAACTAGTGATTTCGGC 58.243 43.478 0.00 0.00 0.00 5.54
2580 3295 4.466726 ACTCCTTAACTAGTGATTTCGGCT 59.533 41.667 0.00 0.00 0.00 5.52
2581 3296 5.655532 ACTCCTTAACTAGTGATTTCGGCTA 59.344 40.000 0.00 0.00 0.00 3.93
2582 3297 6.324254 ACTCCTTAACTAGTGATTTCGGCTAT 59.676 38.462 0.00 0.00 0.00 2.97
2583 3298 7.504911 ACTCCTTAACTAGTGATTTCGGCTATA 59.495 37.037 0.00 0.00 0.00 1.31
2584 3299 8.418597 TCCTTAACTAGTGATTTCGGCTATAT 57.581 34.615 0.00 0.00 0.00 0.86
2585 3300 8.867097 TCCTTAACTAGTGATTTCGGCTATATT 58.133 33.333 0.00 0.00 0.00 1.28
2586 3301 9.490379 CCTTAACTAGTGATTTCGGCTATATTT 57.510 33.333 0.00 0.00 0.00 1.40
2599 3314 8.999905 TTCGGCTATATTTTTATTAAACCCCT 57.000 30.769 0.00 0.00 0.00 4.79
2617 3332 7.786046 AACCCCTATTTTTAAGGTAGTTTGG 57.214 36.000 0.00 0.00 29.14 3.28
2618 3333 6.258354 ACCCCTATTTTTAAGGTAGTTTGGG 58.742 40.000 0.00 0.00 31.70 4.12
2619 3334 5.128171 CCCCTATTTTTAAGGTAGTTTGGGC 59.872 44.000 0.00 0.00 31.70 5.36
2620 3335 5.955959 CCCTATTTTTAAGGTAGTTTGGGCT 59.044 40.000 0.00 0.00 31.70 5.19
2621 3336 6.439375 CCCTATTTTTAAGGTAGTTTGGGCTT 59.561 38.462 0.00 0.00 31.70 4.35
2622 3337 7.038587 CCCTATTTTTAAGGTAGTTTGGGCTTT 60.039 37.037 0.00 0.00 31.70 3.51
2623 3338 8.372459 CCTATTTTTAAGGTAGTTTGGGCTTTT 58.628 33.333 0.00 0.00 0.00 2.27
2624 3339 9.203421 CTATTTTTAAGGTAGTTTGGGCTTTTG 57.797 33.333 0.00 0.00 0.00 2.44
2625 3340 5.538849 TTTAAGGTAGTTTGGGCTTTTGG 57.461 39.130 0.00 0.00 0.00 3.28
2626 3341 2.767644 AGGTAGTTTGGGCTTTTGGT 57.232 45.000 0.00 0.00 0.00 3.67
2627 3342 3.040655 AGGTAGTTTGGGCTTTTGGTT 57.959 42.857 0.00 0.00 0.00 3.67
2628 3343 2.963101 AGGTAGTTTGGGCTTTTGGTTC 59.037 45.455 0.00 0.00 0.00 3.62
2629 3344 2.036733 GGTAGTTTGGGCTTTTGGTTCC 59.963 50.000 0.00 0.00 0.00 3.62
2630 3345 1.128200 AGTTTGGGCTTTTGGTTCCC 58.872 50.000 0.00 0.00 40.47 3.97
2631 3346 0.249699 GTTTGGGCTTTTGGTTCCCG 60.250 55.000 0.00 0.00 42.98 5.14
2632 3347 1.403687 TTTGGGCTTTTGGTTCCCGG 61.404 55.000 0.00 0.00 42.98 5.73
2633 3348 3.691342 GGGCTTTTGGTTCCCGGC 61.691 66.667 0.00 0.00 0.00 6.13
2634 3349 2.915137 GGCTTTTGGTTCCCGGCA 60.915 61.111 0.00 0.00 0.00 5.69
2635 3350 2.503382 GGCTTTTGGTTCCCGGCAA 61.503 57.895 0.00 0.00 0.00 4.52
2636 3351 1.443828 GCTTTTGGTTCCCGGCAAA 59.556 52.632 0.00 0.00 0.00 3.68
2637 3352 0.179070 GCTTTTGGTTCCCGGCAAAA 60.179 50.000 14.44 14.44 0.00 2.44
2638 3353 1.577468 CTTTTGGTTCCCGGCAAAAC 58.423 50.000 12.06 8.38 0.00 2.43
2639 3354 1.138069 CTTTTGGTTCCCGGCAAAACT 59.862 47.619 12.06 0.00 0.00 2.66
2640 3355 0.747852 TTTGGTTCCCGGCAAAACTC 59.252 50.000 0.00 0.00 0.00 3.01
2641 3356 1.448922 TTGGTTCCCGGCAAAACTCG 61.449 55.000 0.00 0.00 0.00 4.18
2642 3357 1.598685 GGTTCCCGGCAAAACTCGA 60.599 57.895 0.00 0.00 0.00 4.04
2643 3358 1.572941 GTTCCCGGCAAAACTCGAC 59.427 57.895 0.00 0.00 0.00 4.20
2644 3359 1.598685 TTCCCGGCAAAACTCGACC 60.599 57.895 0.00 0.00 0.00 4.79
2645 3360 2.281208 CCCGGCAAAACTCGACCA 60.281 61.111 0.00 0.00 0.00 4.02
2646 3361 1.894756 CCCGGCAAAACTCGACCAA 60.895 57.895 0.00 0.00 0.00 3.67
2647 3362 1.448922 CCCGGCAAAACTCGACCAAA 61.449 55.000 0.00 0.00 0.00 3.28
2648 3363 0.317519 CCGGCAAAACTCGACCAAAC 60.318 55.000 0.00 0.00 0.00 2.93
2649 3364 0.317519 CGGCAAAACTCGACCAAACC 60.318 55.000 0.00 0.00 0.00 3.27
2650 3365 0.031585 GGCAAAACTCGACCAAACCC 59.968 55.000 0.00 0.00 0.00 4.11
2651 3366 0.741915 GCAAAACTCGACCAAACCCA 59.258 50.000 0.00 0.00 0.00 4.51
2652 3367 1.269051 GCAAAACTCGACCAAACCCAG 60.269 52.381 0.00 0.00 0.00 4.45
2653 3368 2.294074 CAAAACTCGACCAAACCCAGA 58.706 47.619 0.00 0.00 0.00 3.86
2654 3369 1.963172 AAACTCGACCAAACCCAGAC 58.037 50.000 0.00 0.00 0.00 3.51
2655 3370 0.108019 AACTCGACCAAACCCAGACC 59.892 55.000 0.00 0.00 0.00 3.85
2656 3371 1.374252 CTCGACCAAACCCAGACCG 60.374 63.158 0.00 0.00 0.00 4.79
2657 3372 2.358247 CGACCAAACCCAGACCGG 60.358 66.667 0.00 0.00 0.00 5.28
2658 3373 2.671963 GACCAAACCCAGACCGGC 60.672 66.667 0.00 0.00 0.00 6.13
2659 3374 4.280019 ACCAAACCCAGACCGGCC 62.280 66.667 0.00 0.00 0.00 6.13
2660 3375 4.278513 CCAAACCCAGACCGGCCA 62.279 66.667 0.00 0.00 0.00 5.36
2661 3376 2.035626 CAAACCCAGACCGGCCAT 59.964 61.111 0.00 0.00 0.00 4.40
2662 3377 2.046285 CAAACCCAGACCGGCCATC 61.046 63.158 0.00 0.00 0.00 3.51
2665 3380 4.227134 CCCAGACCGGCCATCGAG 62.227 72.222 0.00 0.00 42.43 4.04
2668 3383 3.532155 AGACCGGCCATCGAGCTC 61.532 66.667 0.00 2.73 42.43 4.09
2748 3471 3.760684 AGCACTCCAAATGATCAACCTTC 59.239 43.478 0.00 0.00 0.00 3.46
2752 3475 5.939883 CACTCCAAATGATCAACCTTCTGTA 59.060 40.000 0.00 0.00 0.00 2.74
2777 3500 4.842531 TCTTAGATTCACCATGCCAGAA 57.157 40.909 0.00 0.00 0.00 3.02
2883 3609 4.605135 GCGTGGTAAAAGCAATTTCAAACG 60.605 41.667 0.00 0.00 32.90 3.60
2928 3655 9.421399 TGGAGATGAACTCACATTTATAGTAGA 57.579 33.333 0.00 0.00 46.54 2.59
2931 3658 9.703892 AGATGAACTCACATTTATAGTAGATGC 57.296 33.333 0.00 0.00 0.00 3.91
2961 3688 5.594317 ACAAGACTTCAGCCAACAAATTACT 59.406 36.000 0.00 0.00 0.00 2.24
2968 3695 8.299570 ACTTCAGCCAACAAATTACTTGATTAG 58.700 33.333 0.00 0.00 38.50 1.73
3191 4106 5.782047 TGAAACTTTCTTAACCCATGCATG 58.218 37.500 20.19 20.19 0.00 4.06
3230 4145 3.072184 ACAATGCAGGGCAATTGGTTTTA 59.928 39.130 7.72 0.00 43.62 1.52
3241 4156 4.629634 GCAATTGGTTTTAAAAGCGGCTAT 59.370 37.500 21.52 11.49 39.16 2.97
3295 4210 7.776618 TGATGGAGACTAACTTAGAGTCAAA 57.223 36.000 2.65 0.00 44.86 2.69
3537 4465 4.576053 TCATTTATACATGCTGGCTCACAC 59.424 41.667 0.00 0.00 0.00 3.82
3577 4505 1.192146 TACAAGGAGCCTCGCCACTT 61.192 55.000 0.00 0.00 0.00 3.16
3690 4618 3.117701 TGTGACTCCATTTGGTCTTTGGA 60.118 43.478 0.00 0.00 37.20 3.53
3699 4627 2.128771 TGGTCTTTGGATAGCCTTGC 57.871 50.000 0.00 0.00 34.31 4.01
3710 4638 4.040461 TGGATAGCCTTGCTCCAAGTATAC 59.960 45.833 0.00 0.00 39.58 1.47
3720 4649 5.077564 TGCTCCAAGTATACGATGTCCTAT 58.922 41.667 9.80 0.00 0.00 2.57
3964 4918 0.959553 CCACGGCGTCCTATATCACT 59.040 55.000 10.85 0.00 0.00 3.41
4000 4954 2.884207 GACGGCGGTCGAACCATC 60.884 66.667 9.82 0.00 38.47 3.51
4035 5073 2.286872 TGCTAGTGCTACTACTCCGAC 58.713 52.381 0.00 0.00 40.48 4.79
4132 5170 9.988815 ATAGGAGTATGTTGTTCTACAATCATC 57.011 33.333 9.34 4.95 40.59 2.92
4171 5631 7.136822 TGCCTATAAGAAACATACACTCCAT 57.863 36.000 0.00 0.00 0.00 3.41
4180 5640 5.991328 AACATACACTCCATTTATGCTCG 57.009 39.130 0.00 0.00 0.00 5.03
4190 5651 5.297547 TCCATTTATGCTCGGATGTAAGTC 58.702 41.667 0.00 0.00 0.00 3.01
4193 5654 5.339008 TTTATGCTCGGATGTAAGTCTGT 57.661 39.130 0.00 0.00 0.00 3.41
4197 5658 4.933330 TGCTCGGATGTAAGTCTGTATTC 58.067 43.478 0.00 0.00 0.00 1.75
4219 5680 0.580104 GTTATGACATACGGCCGCAC 59.420 55.000 28.58 12.70 0.00 5.34
4226 5687 1.070821 CATACGGCCGCACTGATATG 58.929 55.000 28.58 20.00 0.00 1.78
4231 5692 0.035317 GGCCGCACTGATATGGATCA 59.965 55.000 0.00 0.00 39.88 2.92
4242 5703 6.371825 CACTGATATGGATCATGACCATTCAG 59.628 42.308 30.79 30.79 44.51 3.02
4267 5728 6.704493 GGGACTCATTGCAACTCGTTAATATA 59.296 38.462 0.00 0.00 0.00 0.86
4330 5791 3.908103 AGAACTAGTACCTTTTCCTGGCA 59.092 43.478 0.00 0.00 0.00 4.92
4428 5896 5.111293 GGGCATTTCACAAGTATCCATTTG 58.889 41.667 0.00 0.00 0.00 2.32
4431 5899 6.311200 GGCATTTCACAAGTATCCATTTGAAC 59.689 38.462 0.00 0.00 0.00 3.18
4436 5904 8.641499 TTCACAAGTATCCATTTGAACAAAAC 57.359 30.769 4.12 0.00 33.56 2.43
4446 5914 7.302524 TCCATTTGAACAAAACGCTAGTAATC 58.697 34.615 4.12 0.00 33.56 1.75
4447 5915 6.526674 CCATTTGAACAAAACGCTAGTAATCC 59.473 38.462 4.12 0.00 33.56 3.01
4465 5933 8.543293 AGTAATCCCACAAATCATCATTTCAT 57.457 30.769 0.00 0.00 28.97 2.57
4502 5970 4.323417 AGCAGTCGGTTGAAATATGTCAA 58.677 39.130 4.07 4.07 35.14 3.18
4518 5986 3.775202 TGTCAAACACGGGTTTCAAATG 58.225 40.909 14.09 2.36 45.18 2.32
4519 5987 3.193691 TGTCAAACACGGGTTTCAAATGT 59.806 39.130 14.09 0.00 45.18 2.71
4525 5993 3.572255 ACACGGGTTTCAAATGTAGCAAT 59.428 39.130 0.00 0.00 0.00 3.56
4529 5997 5.106317 ACGGGTTTCAAATGTAGCAATACAG 60.106 40.000 0.00 0.00 32.97 2.74
4543 6011 4.214119 AGCAATACAGCTATGTTATTGCCG 59.786 41.667 24.13 0.00 45.40 5.69
4599 6067 3.016736 GCATGCCTAGGAAGCAAAACTA 58.983 45.455 14.75 0.00 44.83 2.24
4600 6068 3.633986 GCATGCCTAGGAAGCAAAACTAT 59.366 43.478 14.75 0.00 44.83 2.12
4601 6069 4.098501 GCATGCCTAGGAAGCAAAACTATT 59.901 41.667 14.75 0.00 44.83 1.73
4602 6070 5.394553 GCATGCCTAGGAAGCAAAACTATTT 60.395 40.000 14.75 0.00 44.83 1.40
4681 6149 4.109050 CGGTGCAAGTTTTAGAAAAGCAA 58.891 39.130 0.00 0.00 31.35 3.91
4829 6303 5.982465 TCTATGGTTTTGCTTGTTTTTGC 57.018 34.783 0.00 0.00 0.00 3.68
4842 6327 6.597280 TGCTTGTTTTTGCTGGTTTTTCTTAT 59.403 30.769 0.00 0.00 0.00 1.73
4843 6328 7.125755 GCTTGTTTTTGCTGGTTTTTCTTATC 58.874 34.615 0.00 0.00 0.00 1.75
4846 6331 7.781056 TGTTTTTGCTGGTTTTTCTTATCTCT 58.219 30.769 0.00 0.00 0.00 3.10
4870 6355 8.090214 TCTTTATTCTGCTTTTGATTTCCTTGG 58.910 33.333 0.00 0.00 0.00 3.61
4871 6356 7.537596 TTATTCTGCTTTTGATTTCCTTGGA 57.462 32.000 0.00 0.00 0.00 3.53
4873 6358 7.722949 ATTCTGCTTTTGATTTCCTTGGATA 57.277 32.000 0.00 0.00 0.00 2.59
4876 6361 8.137745 TCTGCTTTTGATTTCCTTGGATATTT 57.862 30.769 0.00 0.00 0.00 1.40
4877 6362 8.253113 TCTGCTTTTGATTTCCTTGGATATTTC 58.747 33.333 0.00 0.00 0.00 2.17
4878 6363 7.905265 TGCTTTTGATTTCCTTGGATATTTCA 58.095 30.769 0.00 0.00 0.00 2.69
4879 6364 8.542080 TGCTTTTGATTTCCTTGGATATTTCAT 58.458 29.630 0.00 0.00 0.00 2.57
4880 6365 9.387257 GCTTTTGATTTCCTTGGATATTTCATT 57.613 29.630 0.00 0.00 0.00 2.57
4934 6419 9.447157 TTGATTTTCTTTGTTTCAATCTTTGGT 57.553 25.926 0.00 0.00 0.00 3.67
4972 6457 9.759259 CTTTCCTTTTCATTTTGTTTCTTTGTC 57.241 29.630 0.00 0.00 0.00 3.18
4980 6465 8.758633 TCATTTTGTTTCTTTGTCGGTTTTTA 57.241 26.923 0.00 0.00 0.00 1.52
4981 6466 9.372369 TCATTTTGTTTCTTTGTCGGTTTTTAT 57.628 25.926 0.00 0.00 0.00 1.40
4982 6467 9.980780 CATTTTGTTTCTTTGTCGGTTTTTATT 57.019 25.926 0.00 0.00 0.00 1.40
4986 6471 8.989653 TGTTTCTTTGTCGGTTTTTATTTTCT 57.010 26.923 0.00 0.00 0.00 2.52
4987 6472 9.078753 TGTTTCTTTGTCGGTTTTTATTTTCTC 57.921 29.630 0.00 0.00 0.00 2.87
4988 6473 9.078753 GTTTCTTTGTCGGTTTTTATTTTCTCA 57.921 29.630 0.00 0.00 0.00 3.27
4989 6474 9.640963 TTTCTTTGTCGGTTTTTATTTTCTCAA 57.359 25.926 0.00 0.00 0.00 3.02
4990 6475 8.623310 TCTTTGTCGGTTTTTATTTTCTCAAC 57.377 30.769 0.00 0.00 0.00 3.18
4991 6476 8.244802 TCTTTGTCGGTTTTTATTTTCTCAACA 58.755 29.630 0.00 0.00 0.00 3.33
4992 6477 7.743520 TTGTCGGTTTTTATTTTCTCAACAC 57.256 32.000 0.00 0.00 0.00 3.32
4993 6478 7.090953 TGTCGGTTTTTATTTTCTCAACACT 57.909 32.000 0.00 0.00 0.00 3.55
4994 6479 7.540299 TGTCGGTTTTTATTTTCTCAACACTT 58.460 30.769 0.00 0.00 0.00 3.16
4995 6480 7.486551 TGTCGGTTTTTATTTTCTCAACACTTG 59.513 33.333 0.00 0.00 0.00 3.16
4996 6481 7.486870 GTCGGTTTTTATTTTCTCAACACTTGT 59.513 33.333 0.00 0.00 0.00 3.16
4997 6482 8.030106 TCGGTTTTTATTTTCTCAACACTTGTT 58.970 29.630 0.00 0.00 39.12 2.83
4998 6483 8.318167 CGGTTTTTATTTTCTCAACACTTGTTC 58.682 33.333 0.00 0.00 35.83 3.18
4999 6484 9.145865 GGTTTTTATTTTCTCAACACTTGTTCA 57.854 29.630 0.00 0.00 35.83 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
772 782 5.522460 CAGGCCATCAATTAGAATTTTGCTG 59.478 40.000 5.01 0.00 0.00 4.41
830 842 6.183360 GGCCAAGAACATGTACCTGTATAAAC 60.183 42.308 0.00 0.00 0.00 2.01
831 843 5.883673 GGCCAAGAACATGTACCTGTATAAA 59.116 40.000 0.00 0.00 0.00 1.40
832 844 5.190925 AGGCCAAGAACATGTACCTGTATAA 59.809 40.000 5.01 0.00 0.00 0.98
833 845 4.719773 AGGCCAAGAACATGTACCTGTATA 59.280 41.667 5.01 0.00 0.00 1.47
834 846 3.523564 AGGCCAAGAACATGTACCTGTAT 59.476 43.478 5.01 0.00 0.00 2.29
835 847 2.910319 AGGCCAAGAACATGTACCTGTA 59.090 45.455 5.01 0.00 0.00 2.74
836 848 1.705186 AGGCCAAGAACATGTACCTGT 59.295 47.619 5.01 0.00 0.00 4.00
837 849 2.496899 AGGCCAAGAACATGTACCTG 57.503 50.000 5.01 0.00 0.00 4.00
838 850 2.092914 GCTAGGCCAAGAACATGTACCT 60.093 50.000 5.01 2.38 0.00 3.08
839 851 2.289565 GCTAGGCCAAGAACATGTACC 58.710 52.381 5.01 0.00 0.00 3.34
840 852 2.678336 GTGCTAGGCCAAGAACATGTAC 59.322 50.000 5.01 0.00 0.00 2.90
843 855 0.729116 CGTGCTAGGCCAAGAACATG 59.271 55.000 5.01 0.00 0.00 3.21
882 894 4.421948 AGGTGACGAGTCTTAAATTAGCG 58.578 43.478 4.78 0.00 0.00 4.26
900 914 5.122869 CCAGATCTACATTGTTGTTGAGGTG 59.877 44.000 0.00 0.00 40.18 4.00
908 922 3.875727 CTCTGGCCAGATCTACATTGTTG 59.124 47.826 35.11 15.31 36.76 3.33
909 923 3.521126 ACTCTGGCCAGATCTACATTGTT 59.479 43.478 35.11 9.29 36.76 2.83
910 924 3.110705 ACTCTGGCCAGATCTACATTGT 58.889 45.455 35.11 22.99 36.76 2.71
921 935 2.296190 TGCGTACATATACTCTGGCCAG 59.704 50.000 27.87 27.87 0.00 4.85
924 938 3.050619 GTGTGCGTACATATACTCTGGC 58.949 50.000 10.21 0.00 39.39 4.85
925 939 4.042398 GTGTGTGCGTACATATACTCTGG 58.958 47.826 10.21 0.00 39.39 3.86
950 965 1.134521 GGATGTAGGATGCCGTTGTGA 60.135 52.381 0.00 0.00 0.00 3.58
951 966 1.299541 GGATGTAGGATGCCGTTGTG 58.700 55.000 0.00 0.00 0.00 3.33
952 967 0.908910 TGGATGTAGGATGCCGTTGT 59.091 50.000 0.00 0.00 0.00 3.32
953 968 2.036958 TTGGATGTAGGATGCCGTTG 57.963 50.000 0.00 0.00 0.00 4.10
954 969 3.297134 AATTGGATGTAGGATGCCGTT 57.703 42.857 0.00 0.00 0.00 4.44
955 970 2.951642 CAAATTGGATGTAGGATGCCGT 59.048 45.455 0.00 0.00 0.00 5.68
956 971 2.951642 ACAAATTGGATGTAGGATGCCG 59.048 45.455 0.00 0.00 0.00 5.69
957 972 3.953612 TGACAAATTGGATGTAGGATGCC 59.046 43.478 0.00 0.00 0.00 4.40
987 1152 2.201022 CGTCATACCTCCTCCCCCG 61.201 68.421 0.00 0.00 0.00 5.73
990 1155 0.465097 TCGTCGTCATACCTCCTCCC 60.465 60.000 0.00 0.00 0.00 4.30
998 1164 0.029567 CTCCCTGCTCGTCGTCATAC 59.970 60.000 0.00 0.00 0.00 2.39
1092 1279 3.001330 ACACGCTCGAAAACTCAAGAAAG 59.999 43.478 0.00 0.00 0.00 2.62
1276 1476 1.299089 CACAGAGACGTCGCACACA 60.299 57.895 21.54 0.00 0.00 3.72
1324 1524 1.241990 CGTCGAAGGAGTCCCTGACA 61.242 60.000 20.03 0.00 43.48 3.58
1333 1533 2.097038 CAGCTTGCCGTCGAAGGAG 61.097 63.158 22.33 11.46 0.00 3.69
1370 1570 4.037565 GCAACCAATGGTAATTACTAGGCC 59.962 45.833 15.05 0.00 33.12 5.19
1374 1574 6.068461 TGGAGCAACCAATGGTAATTACTA 57.932 37.500 15.05 9.85 46.75 1.82
1375 1575 4.929479 TGGAGCAACCAATGGTAATTACT 58.071 39.130 15.05 0.00 46.75 2.24
1395 1595 9.616634 CATTAATGAATCAAATTACCTCGATGG 57.383 33.333 10.04 0.00 42.93 3.51
1406 1606 5.858049 CGCGGCATACATTAATGAATCAAAT 59.142 36.000 22.16 0.14 0.00 2.32
1414 1614 2.157668 GTCCTCGCGGCATACATTAATG 59.842 50.000 14.01 14.01 0.00 1.90
1416 1616 1.539496 GGTCCTCGCGGCATACATTAA 60.539 52.381 6.13 0.00 0.00 1.40
1421 1621 1.956170 CATGGTCCTCGCGGCATAC 60.956 63.158 6.13 0.00 0.00 2.39
1430 1758 5.525378 GTGAGTATGATTTGACATGGTCCTC 59.475 44.000 0.00 0.00 0.00 3.71
1487 1819 5.619220 TGCCCAAGTTTAAATGAAAATGCT 58.381 33.333 0.00 0.00 0.00 3.79
1495 1827 5.412286 CCCAAGAAATGCCCAAGTTTAAATG 59.588 40.000 0.00 0.00 0.00 2.32
1505 1837 2.679642 CGGCCCAAGAAATGCCCA 60.680 61.111 0.00 0.00 42.29 5.36
1506 1838 3.460868 CCGGCCCAAGAAATGCCC 61.461 66.667 0.00 0.00 42.29 5.36
1511 1843 2.600173 CAAGCCCGGCCCAAGAAA 60.600 61.111 5.55 0.00 0.00 2.52
1512 1844 4.676951 CCAAGCCCGGCCCAAGAA 62.677 66.667 5.55 0.00 0.00 2.52
1514 1846 4.676951 TTCCAAGCCCGGCCCAAG 62.677 66.667 5.55 0.00 0.00 3.61
1515 1847 3.758133 TTTTCCAAGCCCGGCCCAA 62.758 57.895 5.55 0.00 0.00 4.12
1516 1848 4.226095 TTTTCCAAGCCCGGCCCA 62.226 61.111 5.55 0.00 0.00 5.36
1517 1849 3.381983 CTTTTCCAAGCCCGGCCC 61.382 66.667 5.55 0.00 0.00 5.80
1518 1850 2.600470 ACTTTTCCAAGCCCGGCC 60.600 61.111 5.55 0.00 32.57 6.13
1519 1851 2.636412 GGACTTTTCCAAGCCCGGC 61.636 63.158 0.00 0.00 42.30 6.13
1520 1852 3.681473 GGACTTTTCCAAGCCCGG 58.319 61.111 0.00 0.00 42.30 5.73
1528 1860 2.502130 TGTTTTGGGGTTGGACTTTTCC 59.498 45.455 0.00 0.00 43.19 3.13
1529 1861 3.897141 TGTTTTGGGGTTGGACTTTTC 57.103 42.857 0.00 0.00 0.00 2.29
1530 1862 3.777522 TCATGTTTTGGGGTTGGACTTTT 59.222 39.130 0.00 0.00 0.00 2.27
1531 1863 3.379452 TCATGTTTTGGGGTTGGACTTT 58.621 40.909 0.00 0.00 0.00 2.66
1532 1864 3.039252 TCATGTTTTGGGGTTGGACTT 57.961 42.857 0.00 0.00 0.00 3.01
1533 1865 2.698274 GTTCATGTTTTGGGGTTGGACT 59.302 45.455 0.00 0.00 0.00 3.85
1534 1866 2.224185 GGTTCATGTTTTGGGGTTGGAC 60.224 50.000 0.00 0.00 0.00 4.02
1535 1867 2.043227 GGTTCATGTTTTGGGGTTGGA 58.957 47.619 0.00 0.00 0.00 3.53
1536 1868 1.071542 GGGTTCATGTTTTGGGGTTGG 59.928 52.381 0.00 0.00 0.00 3.77
1537 1869 1.270041 CGGGTTCATGTTTTGGGGTTG 60.270 52.381 0.00 0.00 0.00 3.77
1538 1870 1.044611 CGGGTTCATGTTTTGGGGTT 58.955 50.000 0.00 0.00 0.00 4.11
1539 1871 0.186386 TCGGGTTCATGTTTTGGGGT 59.814 50.000 0.00 0.00 0.00 4.95
1540 1872 0.601057 GTCGGGTTCATGTTTTGGGG 59.399 55.000 0.00 0.00 0.00 4.96
1541 1873 0.601057 GGTCGGGTTCATGTTTTGGG 59.399 55.000 0.00 0.00 0.00 4.12
1542 1874 0.601057 GGGTCGGGTTCATGTTTTGG 59.399 55.000 0.00 0.00 0.00 3.28
1543 1875 0.239879 CGGGTCGGGTTCATGTTTTG 59.760 55.000 0.00 0.00 0.00 2.44
1544 1876 1.520600 GCGGGTCGGGTTCATGTTTT 61.521 55.000 0.00 0.00 0.00 2.43
1545 1877 1.969589 GCGGGTCGGGTTCATGTTT 60.970 57.895 0.00 0.00 0.00 2.83
1546 1878 2.359478 GCGGGTCGGGTTCATGTT 60.359 61.111 0.00 0.00 0.00 2.71
1547 1879 4.404098 GGCGGGTCGGGTTCATGT 62.404 66.667 0.00 0.00 0.00 3.21
1548 1880 3.697439 ATGGCGGGTCGGGTTCATG 62.697 63.158 0.00 0.00 0.00 3.07
1549 1881 3.407967 ATGGCGGGTCGGGTTCAT 61.408 61.111 0.00 0.00 0.00 2.57
1550 1882 4.402528 CATGGCGGGTCGGGTTCA 62.403 66.667 0.00 0.00 0.00 3.18
1562 1894 0.820871 TAATTGTTTCCGGCCATGGC 59.179 50.000 29.47 29.47 41.06 4.40
1563 1895 3.601443 TTTAATTGTTTCCGGCCATGG 57.399 42.857 7.63 7.63 0.00 3.66
1564 1896 3.870419 CCATTTAATTGTTTCCGGCCATG 59.130 43.478 2.24 0.00 0.00 3.66
1565 1897 3.517500 ACCATTTAATTGTTTCCGGCCAT 59.482 39.130 2.24 0.00 0.00 4.40
1566 1898 2.900546 ACCATTTAATTGTTTCCGGCCA 59.099 40.909 2.24 0.00 0.00 5.36
1567 1899 3.258228 CACCATTTAATTGTTTCCGGCC 58.742 45.455 0.00 0.00 0.00 6.13
1568 1900 2.670905 GCACCATTTAATTGTTTCCGGC 59.329 45.455 0.00 0.00 0.00 6.13
1569 1901 3.919216 TGCACCATTTAATTGTTTCCGG 58.081 40.909 0.00 0.00 0.00 5.14
1570 1902 6.479095 AAATGCACCATTTAATTGTTTCCG 57.521 33.333 1.61 0.00 41.50 4.30
1607 1939 9.796120 CACCAAAAACGATTAACATAATACCAT 57.204 29.630 0.00 0.00 0.00 3.55
1608 1940 8.794553 ACACCAAAAACGATTAACATAATACCA 58.205 29.630 0.00 0.00 0.00 3.25
1613 1945 9.991388 GCTATACACCAAAAACGATTAACATAA 57.009 29.630 0.00 0.00 0.00 1.90
1614 1946 9.386010 AGCTATACACCAAAAACGATTAACATA 57.614 29.630 0.00 0.00 0.00 2.29
1615 1947 8.276252 AGCTATACACCAAAAACGATTAACAT 57.724 30.769 0.00 0.00 0.00 2.71
1616 1948 7.675962 AGCTATACACCAAAAACGATTAACA 57.324 32.000 0.00 0.00 0.00 2.41
1622 1954 8.832521 CCAAATATAGCTATACACCAAAAACGA 58.167 33.333 15.67 0.00 0.00 3.85
1623 1955 8.073768 CCCAAATATAGCTATACACCAAAAACG 58.926 37.037 15.67 0.00 0.00 3.60
1624 1956 9.127277 TCCCAAATATAGCTATACACCAAAAAC 57.873 33.333 15.67 0.00 0.00 2.43
1625 1957 9.349713 CTCCCAAATATAGCTATACACCAAAAA 57.650 33.333 15.67 0.00 0.00 1.94
1626 1958 7.447238 GCTCCCAAATATAGCTATACACCAAAA 59.553 37.037 15.67 0.00 33.40 2.44
1627 1959 6.940298 GCTCCCAAATATAGCTATACACCAAA 59.060 38.462 15.67 0.00 33.40 3.28
1628 1960 6.043822 TGCTCCCAAATATAGCTATACACCAA 59.956 38.462 15.67 0.00 37.16 3.67
1629 1961 5.546110 TGCTCCCAAATATAGCTATACACCA 59.454 40.000 15.67 0.00 37.16 4.17
1630 1962 6.049955 TGCTCCCAAATATAGCTATACACC 57.950 41.667 15.67 0.61 37.16 4.16
1631 1963 7.162082 AGTTGCTCCCAAATATAGCTATACAC 58.838 38.462 15.67 3.06 37.16 2.90
1632 1964 7.316393 AGTTGCTCCCAAATATAGCTATACA 57.684 36.000 15.67 4.21 37.16 2.29
1633 1965 9.892130 ATTAGTTGCTCCCAAATATAGCTATAC 57.108 33.333 15.67 1.47 37.16 1.47
1637 1969 9.813826 ATTAATTAGTTGCTCCCAAATATAGCT 57.186 29.630 0.00 0.00 37.16 3.32
1643 1975 8.197439 GCACTTATTAATTAGTTGCTCCCAAAT 58.803 33.333 4.39 0.00 33.34 2.32
1644 1976 7.396055 AGCACTTATTAATTAGTTGCTCCCAAA 59.604 33.333 17.87 0.00 31.68 3.28
1645 1977 6.889722 AGCACTTATTAATTAGTTGCTCCCAA 59.110 34.615 17.87 0.00 29.15 4.12
1646 1978 6.423182 AGCACTTATTAATTAGTTGCTCCCA 58.577 36.000 17.87 0.00 29.15 4.37
1676 2008 0.108186 TTGATCATTGCGAGGCTCGT 60.108 50.000 34.41 16.55 42.81 4.18
1677 2009 0.302890 GTTGATCATTGCGAGGCTCG 59.697 55.000 31.40 31.40 43.89 5.03
1705 2037 0.734253 GCGAATGACTGAGAGCGTGT 60.734 55.000 0.00 0.00 0.00 4.49
1808 2186 2.447047 AGGGAAGACATGTGGAAAACCT 59.553 45.455 1.15 0.00 0.00 3.50
1819 2197 3.369576 GGTCGAAAAGCTAGGGAAGACAT 60.370 47.826 0.00 0.00 0.00 3.06
1820 2198 2.028385 GGTCGAAAAGCTAGGGAAGACA 60.028 50.000 0.00 0.00 0.00 3.41
1878 2269 4.391140 GTGACTTTCGCGAAAAAGAGAT 57.609 40.909 31.68 14.90 38.30 2.75
1903 2418 0.868406 GTGCCTCTCACGGAAACAAG 59.132 55.000 0.00 0.00 35.76 3.16
2122 2808 3.428870 CGTGACTCTCGTTAAAGCACAAT 59.571 43.478 0.00 0.00 0.00 2.71
2132 2818 3.292936 ACGGCCGTGACTCTCGTT 61.293 61.111 33.75 0.00 0.00 3.85
2185 2879 1.351153 CCTCTCGCGGAAGAAGAAAC 58.649 55.000 6.13 0.00 0.00 2.78
2189 2884 1.807573 GTGCCTCTCGCGGAAGAAG 60.808 63.158 6.13 0.00 42.08 2.85
2333 3046 6.765989 TCCCATATTGATAGGTTTTGACGAAG 59.234 38.462 0.00 0.00 0.00 3.79
2352 3065 7.505923 TCGAGATCTTCAAAACTAGATCCCATA 59.494 37.037 0.00 0.00 38.24 2.74
2382 3095 0.447801 CTTTCGCCGTTGGATTCCTG 59.552 55.000 3.95 0.00 0.00 3.86
2477 3192 0.531974 GTCACTTGTCGCAACCTGGA 60.532 55.000 0.00 0.00 0.00 3.86
2530 3245 3.126001 TGCGGAGATCACTTCAACTTT 57.874 42.857 0.00 0.00 0.00 2.66
2591 3306 9.311676 CCAAACTACCTTAAAAATAGGGGTTTA 57.688 33.333 0.00 0.00 38.99 2.01
2592 3307 7.236019 CCCAAACTACCTTAAAAATAGGGGTTT 59.764 37.037 0.00 0.00 40.25 3.27
2593 3308 6.727231 CCCAAACTACCTTAAAAATAGGGGTT 59.273 38.462 0.00 0.00 37.09 4.11
2594 3309 6.258354 CCCAAACTACCTTAAAAATAGGGGT 58.742 40.000 0.00 0.00 37.09 4.95
2595 3310 5.128171 GCCCAAACTACCTTAAAAATAGGGG 59.872 44.000 0.00 0.00 37.09 4.79
2596 3311 5.955959 AGCCCAAACTACCTTAAAAATAGGG 59.044 40.000 0.00 0.00 37.09 3.53
2597 3312 7.476540 AAGCCCAAACTACCTTAAAAATAGG 57.523 36.000 0.00 0.00 38.79 2.57
2598 3313 9.203421 CAAAAGCCCAAACTACCTTAAAAATAG 57.797 33.333 0.00 0.00 0.00 1.73
2599 3314 8.151596 CCAAAAGCCCAAACTACCTTAAAAATA 58.848 33.333 0.00 0.00 0.00 1.40
2600 3315 6.995686 CCAAAAGCCCAAACTACCTTAAAAAT 59.004 34.615 0.00 0.00 0.00 1.82
2601 3316 6.070136 ACCAAAAGCCCAAACTACCTTAAAAA 60.070 34.615 0.00 0.00 0.00 1.94
2602 3317 5.425862 ACCAAAAGCCCAAACTACCTTAAAA 59.574 36.000 0.00 0.00 0.00 1.52
2603 3318 4.963628 ACCAAAAGCCCAAACTACCTTAAA 59.036 37.500 0.00 0.00 0.00 1.52
2604 3319 4.548669 ACCAAAAGCCCAAACTACCTTAA 58.451 39.130 0.00 0.00 0.00 1.85
2605 3320 4.187506 ACCAAAAGCCCAAACTACCTTA 57.812 40.909 0.00 0.00 0.00 2.69
2606 3321 3.040655 ACCAAAAGCCCAAACTACCTT 57.959 42.857 0.00 0.00 0.00 3.50
2607 3322 2.767644 ACCAAAAGCCCAAACTACCT 57.232 45.000 0.00 0.00 0.00 3.08
2608 3323 2.036733 GGAACCAAAAGCCCAAACTACC 59.963 50.000 0.00 0.00 0.00 3.18
2609 3324 3.380479 GGAACCAAAAGCCCAAACTAC 57.620 47.619 0.00 0.00 0.00 2.73
2625 3340 1.572941 GTCGAGTTTTGCCGGGAAC 59.427 57.895 8.37 0.00 0.00 3.62
2626 3341 1.598685 GGTCGAGTTTTGCCGGGAA 60.599 57.895 3.37 3.37 0.00 3.97
2627 3342 2.031465 GGTCGAGTTTTGCCGGGA 59.969 61.111 2.18 0.00 0.00 5.14
2628 3343 1.448922 TTTGGTCGAGTTTTGCCGGG 61.449 55.000 2.18 0.00 0.00 5.73
2629 3344 0.317519 GTTTGGTCGAGTTTTGCCGG 60.318 55.000 0.00 0.00 0.00 6.13
2630 3345 0.317519 GGTTTGGTCGAGTTTTGCCG 60.318 55.000 0.00 0.00 0.00 5.69
2631 3346 0.031585 GGGTTTGGTCGAGTTTTGCC 59.968 55.000 0.00 0.00 0.00 4.52
2632 3347 0.741915 TGGGTTTGGTCGAGTTTTGC 59.258 50.000 0.00 0.00 0.00 3.68
2633 3348 2.032924 GTCTGGGTTTGGTCGAGTTTTG 59.967 50.000 0.00 0.00 0.00 2.44
2634 3349 2.294979 GTCTGGGTTTGGTCGAGTTTT 58.705 47.619 0.00 0.00 0.00 2.43
2635 3350 1.476291 GGTCTGGGTTTGGTCGAGTTT 60.476 52.381 0.00 0.00 0.00 2.66
2636 3351 0.108019 GGTCTGGGTTTGGTCGAGTT 59.892 55.000 0.00 0.00 0.00 3.01
2637 3352 1.752833 GGTCTGGGTTTGGTCGAGT 59.247 57.895 0.00 0.00 0.00 4.18
2638 3353 1.374252 CGGTCTGGGTTTGGTCGAG 60.374 63.158 0.00 0.00 0.00 4.04
2639 3354 2.738480 CGGTCTGGGTTTGGTCGA 59.262 61.111 0.00 0.00 0.00 4.20
2640 3355 2.358247 CCGGTCTGGGTTTGGTCG 60.358 66.667 0.00 0.00 0.00 4.79
2641 3356 2.671963 GCCGGTCTGGGTTTGGTC 60.672 66.667 1.90 0.00 38.63 4.02
2642 3357 4.280019 GGCCGGTCTGGGTTTGGT 62.280 66.667 1.90 0.00 38.63 3.67
2643 3358 3.583882 ATGGCCGGTCTGGGTTTGG 62.584 63.158 7.97 0.00 38.63 3.28
2644 3359 2.035626 ATGGCCGGTCTGGGTTTG 59.964 61.111 7.97 0.00 38.63 2.93
2645 3360 2.355115 GATGGCCGGTCTGGGTTT 59.645 61.111 7.97 0.00 38.63 3.27
2646 3361 4.096003 CGATGGCCGGTCTGGGTT 62.096 66.667 7.97 0.00 38.63 4.11
2648 3363 4.227134 CTCGATGGCCGGTCTGGG 62.227 72.222 7.97 0.00 38.63 4.45
2649 3364 4.899239 GCTCGATGGCCGGTCTGG 62.899 72.222 7.97 0.00 42.50 3.86
2650 3365 3.781770 GAGCTCGATGGCCGGTCTG 62.782 68.421 7.97 0.00 39.14 3.51
2651 3366 3.532155 GAGCTCGATGGCCGGTCT 61.532 66.667 7.97 0.00 39.14 3.85
2652 3367 4.593864 GGAGCTCGATGGCCGGTC 62.594 72.222 7.83 0.00 39.14 4.79
2654 3369 4.598894 CTGGAGCTCGATGGCCGG 62.599 72.222 7.83 0.00 39.14 6.13
2655 3370 4.598894 CCTGGAGCTCGATGGCCG 62.599 72.222 7.83 0.00 40.25 6.13
2656 3371 2.932130 GAACCTGGAGCTCGATGGCC 62.932 65.000 7.83 0.00 0.00 5.36
2657 3372 1.522580 GAACCTGGAGCTCGATGGC 60.523 63.158 7.83 0.00 0.00 4.40
2658 3373 1.227089 CGAACCTGGAGCTCGATGG 60.227 63.158 7.83 11.75 34.52 3.51
2659 3374 1.880340 GCGAACCTGGAGCTCGATG 60.880 63.158 17.34 3.30 34.52 3.84
2660 3375 2.496817 GCGAACCTGGAGCTCGAT 59.503 61.111 17.34 0.00 34.52 3.59
2661 3376 4.116328 CGCGAACCTGGAGCTCGA 62.116 66.667 17.34 2.19 34.52 4.04
2680 3395 2.124695 GGGAAGCCTAGCCCAACG 60.125 66.667 0.00 0.00 44.07 4.10
2693 3408 5.151454 ACAAAATAAACCTGGACATGGGAA 58.849 37.500 0.00 0.00 0.00 3.97
2742 3461 7.878644 GGTGAATCTAAGAAACTACAGAAGGTT 59.121 37.037 0.00 0.00 38.04 3.50
2748 3471 6.037610 GGCATGGTGAATCTAAGAAACTACAG 59.962 42.308 0.00 0.00 0.00 2.74
2752 3475 4.922206 TGGCATGGTGAATCTAAGAAACT 58.078 39.130 0.00 0.00 0.00 2.66
2777 3500 8.980596 TCCATTCAATATCACCTTAGCAAAAAT 58.019 29.630 0.00 0.00 0.00 1.82
2901 3628 9.689976 CTACTATAAATGTGAGTTCATCTCCAG 57.310 37.037 0.00 0.00 42.12 3.86
2906 3633 8.930760 GGCATCTACTATAAATGTGAGTTCATC 58.069 37.037 0.00 0.00 0.00 2.92
2928 3655 3.604582 GCTGAAGTCTTGTCTTAGGCAT 58.395 45.455 0.00 0.00 0.00 4.40
2931 3658 3.685139 TGGCTGAAGTCTTGTCTTAGG 57.315 47.619 0.00 0.00 0.00 2.69
3007 3734 5.718649 GCTTCATGCTGAGAAATACGTAA 57.281 39.130 0.00 0.00 38.95 3.18
3078 3992 5.633601 GTGAAGTTTTTAACCAGCAATAGGC 59.366 40.000 0.00 0.00 45.30 3.93
3160 4075 9.753674 ATGGGTTAAGAAAGTTTCATAGATTCA 57.246 29.630 17.65 7.84 0.00 2.57
3191 4106 4.669197 GCATTGTTCACCTATGTTGTCGAC 60.669 45.833 9.11 9.11 0.00 4.20
3230 4145 2.481449 CGTCCACTCTATAGCCGCTTTT 60.481 50.000 0.00 0.00 0.00 2.27
3241 4156 3.129502 CGTCCGCCGTCCACTCTA 61.130 66.667 0.00 0.00 0.00 2.43
3295 4210 1.546476 CGAGCTGACTAAGGTGGAAGT 59.454 52.381 0.00 0.00 36.52 3.01
3537 4465 1.755179 ATTGGTTCATTCCTCCTGCG 58.245 50.000 0.00 0.00 0.00 5.18
3577 4505 5.009710 CACGAATATTGTCTCTAGCCCACTA 59.990 44.000 0.00 0.00 0.00 2.74
3690 4618 3.895656 TCGTATACTTGGAGCAAGGCTAT 59.104 43.478 0.56 0.00 44.81 2.97
3710 4638 5.147330 TGCTGGGTATTTATAGGACATCG 57.853 43.478 0.00 0.00 0.00 3.84
3720 4649 7.801104 TGATCTCAGTAATTGCTGGGTATTTA 58.199 34.615 21.07 3.96 38.12 1.40
3964 4918 3.537580 GTCGATACAAATAACCTGGCCA 58.462 45.455 4.71 4.71 0.00 5.36
4000 4954 5.705441 AGCACTAGCAGCTAGACTCTAATAG 59.295 44.000 32.35 8.12 45.49 1.73
4071 5109 3.057104 ACCAAACATCGACAGACGTGATA 60.057 43.478 0.00 0.00 43.13 2.15
4079 5117 5.996219 TGTAATGAAACCAAACATCGACAG 58.004 37.500 0.00 0.00 0.00 3.51
4125 5163 7.664731 AGGCATTTCTTACTCCATAGATGATTG 59.335 37.037 0.00 0.00 0.00 2.67
4128 5166 6.753913 AGGCATTTCTTACTCCATAGATGA 57.246 37.500 0.00 0.00 0.00 2.92
4159 5619 4.100963 TCCGAGCATAAATGGAGTGTATGT 59.899 41.667 0.00 0.00 0.00 2.29
4171 5631 5.339008 ACAGACTTACATCCGAGCATAAA 57.661 39.130 0.00 0.00 0.00 1.40
4180 5640 9.817809 TCATAACAAGAATACAGACTTACATCC 57.182 33.333 0.00 0.00 0.00 3.51
4190 5651 6.073765 GGCCGTATGTCATAACAAGAATACAG 60.074 42.308 0.00 0.00 39.30 2.74
4193 5654 4.986034 CGGCCGTATGTCATAACAAGAATA 59.014 41.667 19.50 0.00 39.30 1.75
4197 5658 1.260561 GCGGCCGTATGTCATAACAAG 59.739 52.381 28.70 0.00 39.30 3.16
4219 5680 5.880887 CCTGAATGGTCATGATCCATATCAG 59.119 44.000 28.99 28.99 45.17 2.90
4226 5687 2.441001 AGTCCCTGAATGGTCATGATCC 59.559 50.000 2.86 5.49 31.85 3.36
4231 5692 3.894759 CAATGAGTCCCTGAATGGTCAT 58.105 45.455 0.00 0.00 32.45 3.06
4242 5703 1.523758 AACGAGTTGCAATGAGTCCC 58.476 50.000 0.59 0.00 0.00 4.46
4267 5728 6.921307 GGGTTGTTTCTACAAAACAATCGATT 59.079 34.615 16.40 4.39 46.65 3.34
4330 5791 0.899717 ACATGCATTTCCCGTGGCTT 60.900 50.000 0.00 0.00 0.00 4.35
4364 5832 7.024345 TGCATGAGTGAGGATATGGATTATT 57.976 36.000 0.00 0.00 0.00 1.40
4428 5896 4.453136 TGTGGGATTACTAGCGTTTTGTTC 59.547 41.667 0.00 0.00 0.00 3.18
4431 5899 5.365403 TTTGTGGGATTACTAGCGTTTTG 57.635 39.130 0.00 0.00 0.00 2.44
4436 5904 5.056480 TGATGATTTGTGGGATTACTAGCG 58.944 41.667 0.00 0.00 0.00 4.26
4486 5954 4.155449 CCGTGTTTGACATATTTCAACCG 58.845 43.478 3.77 7.04 35.18 4.44
4502 5970 2.952978 TGCTACATTTGAAACCCGTGTT 59.047 40.909 0.00 0.00 35.82 3.32
4518 5986 6.603095 GGCAATAACATAGCTGTATTGCTAC 58.397 40.000 27.23 17.33 46.60 3.58
4519 5987 6.962567 ACGGCAATAACATAGCTGTATTGCTA 60.963 38.462 27.23 8.54 45.35 3.49
4525 5993 4.394439 TGACGGCAATAACATAGCTGTA 57.606 40.909 0.00 0.00 47.00 2.74
4529 5997 3.058914 GGTCATGACGGCAATAACATAGC 60.059 47.826 19.33 0.00 0.00 2.97
4543 6011 4.118410 CTGTAATCTGCTCAGGTCATGAC 58.882 47.826 17.91 17.91 33.22 3.06
4659 6127 3.701241 TGCTTTTCTAAAACTTGCACCG 58.299 40.909 0.00 0.00 0.00 4.94
4724 6198 2.019249 CGGATGCAACCATTGAGACAT 58.981 47.619 14.03 0.00 0.00 3.06
4818 6292 4.944962 AGAAAAACCAGCAAAAACAAGC 57.055 36.364 0.00 0.00 0.00 4.01
4819 6293 8.424274 AGATAAGAAAAACCAGCAAAAACAAG 57.576 30.769 0.00 0.00 0.00 3.16
4828 6302 9.780413 CAGAATAAAGAGATAAGAAAAACCAGC 57.220 33.333 0.00 0.00 0.00 4.85
4829 6303 9.780413 GCAGAATAAAGAGATAAGAAAAACCAG 57.220 33.333 0.00 0.00 0.00 4.00
4842 6327 8.641498 AGGAAATCAAAAGCAGAATAAAGAGA 57.359 30.769 0.00 0.00 0.00 3.10
4843 6328 9.136952 CAAGGAAATCAAAAGCAGAATAAAGAG 57.863 33.333 0.00 0.00 0.00 2.85
4846 6331 7.961351 TCCAAGGAAATCAAAAGCAGAATAAA 58.039 30.769 0.00 0.00 0.00 1.40
4852 6337 8.036575 TGAAATATCCAAGGAAATCAAAAGCAG 58.963 33.333 0.00 0.00 0.00 4.24
4950 6435 6.312672 ACCGACAAAGAAACAAAATGAAAAGG 59.687 34.615 0.00 0.00 0.00 3.11
4972 6457 7.749539 ACAAGTGTTGAGAAAATAAAAACCG 57.250 32.000 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.