Multiple sequence alignment - TraesCS1B01G417100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G417100 chr1B 100.000 3414 0 0 1 3414 641631911 641628498 0.000000e+00 6305.0
1 TraesCS1B01G417100 chr1D 92.128 1588 74 14 1236 2816 464862992 464861449 0.000000e+00 2193.0
2 TraesCS1B01G417100 chr1D 92.062 1096 61 13 1 1082 464864148 464863065 0.000000e+00 1519.0
3 TraesCS1B01G417100 chr1D 90.164 244 22 2 3062 3304 464861367 464861125 1.980000e-82 316.0
4 TraesCS1B01G417100 chr1D 98.780 82 1 0 3333 3414 464861025 464860944 2.750000e-31 147.0
5 TraesCS1B01G417100 chr1D 96.552 58 2 0 2815 2872 464861426 464861369 2.800000e-16 97.1
6 TraesCS1B01G417100 chr1A 91.731 774 39 6 1236 2008 557153711 557152962 0.000000e+00 1051.0
7 TraesCS1B01G417100 chr1A 84.446 1138 87 46 1 1082 557154887 557153784 0.000000e+00 1038.0
8 TraesCS1B01G417100 chr1A 90.702 527 43 4 2061 2583 557152968 557152444 0.000000e+00 697.0
9 TraesCS1B01G417100 chr1A 85.915 71 8 2 2812 2882 557152200 557152132 1.310000e-09 75.0
10 TraesCS1B01G417100 chr3B 92.832 558 23 9 1 553 657946288 657945743 0.000000e+00 793.0
11 TraesCS1B01G417100 chr3B 89.308 159 13 4 1080 1236 48860656 48860812 2.690000e-46 196.0
12 TraesCS1B01G417100 chr3B 87.805 164 13 3 1468 1631 648406322 648406478 5.820000e-43 185.0
13 TraesCS1B01G417100 chr5D 90.101 495 47 2 1 493 271480746 271481240 2.870000e-180 641.0
14 TraesCS1B01G417100 chr5D 90.466 451 43 0 10 460 271470335 271470785 2.270000e-166 595.0
15 TraesCS1B01G417100 chr5D 89.783 460 46 1 1 460 271475527 271475985 3.800000e-164 588.0
16 TraesCS1B01G417100 chr5D 89.520 458 48 0 1 458 271465110 271465567 6.350000e-162 580.0
17 TraesCS1B01G417100 chr5D 82.390 477 60 14 1296 1759 271708433 271707968 8.880000e-106 394.0
18 TraesCS1B01G417100 chr5A 78.088 1182 144 51 1296 2438 361447237 361448342 2.870000e-180 641.0
19 TraesCS1B01G417100 chr5A 85.069 288 41 2 208 493 361364997 361365284 3.330000e-75 292.0
20 TraesCS1B01G417100 chr5A 94.118 136 8 0 1100 1235 240225653 240225788 1.240000e-49 207.0
21 TraesCS1B01G417100 chr5B 83.599 439 44 17 1296 1717 307880988 307881415 1.490000e-103 387.0
22 TraesCS1B01G417100 chr5B 96.899 129 4 0 1109 1237 660144584 660144712 2.060000e-52 217.0
23 TraesCS1B01G417100 chr5B 95.489 133 5 1 1108 1239 44454482 44454350 9.600000e-51 211.0
24 TraesCS1B01G417100 chr2D 96.947 131 4 0 1108 1238 619720545 619720675 1.590000e-53 220.0
25 TraesCS1B01G417100 chr2D 93.662 142 6 3 1109 1250 550646230 550646368 3.450000e-50 209.0
26 TraesCS1B01G417100 chrUn 81.919 271 37 3 194 464 31027114 31027372 5.740000e-53 219.0
27 TraesCS1B01G417100 chr6B 92.466 146 8 2 1091 1235 660665871 660666014 4.470000e-49 206.0
28 TraesCS1B01G417100 chr3A 92.958 142 9 1 1098 1238 535225199 535225340 4.470000e-49 206.0
29 TraesCS1B01G417100 chr4A 88.344 163 14 5 1105 1267 727088941 727088784 1.250000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G417100 chr1B 641628498 641631911 3413 True 6305.00 6305 100.0000 1 3414 1 chr1B.!!$R1 3413
1 TraesCS1B01G417100 chr1D 464860944 464864148 3204 True 854.42 2193 93.9372 1 3414 5 chr1D.!!$R1 3413
2 TraesCS1B01G417100 chr1A 557152132 557154887 2755 True 715.25 1051 88.1985 1 2882 4 chr1A.!!$R1 2881
3 TraesCS1B01G417100 chr3B 657945743 657946288 545 True 793.00 793 92.8320 1 553 1 chr3B.!!$R1 552
4 TraesCS1B01G417100 chr5A 361447237 361448342 1105 False 641.00 641 78.0880 1296 2438 1 chr5A.!!$F3 1142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 570 0.254107 AGGAGGAGAGGAGGAGGAGT 60.254 60.0 0.0 0.0 0.0 3.85 F
1124 1196 0.256752 TCATACTCCCTCCGTCCGAA 59.743 55.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2260 0.247460 GAACCCTTCCCAATGCAAGC 59.753 55.0 0.0 0.0 0.0 4.01 R
2948 3137 0.313672 GGCAAAAGCCGACATGAACA 59.686 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.393487 GGAAGAGGTCGTAGGAGGCC 61.393 65.000 0.00 0.00 0.00 5.19
291 295 3.553095 GAGGAGGTGCGGCTTGGTT 62.553 63.158 0.00 0.00 0.00 3.67
366 370 4.717629 TCGTCGGCGAGCAGGTTG 62.718 66.667 8.66 0.00 42.81 3.77
471 475 2.684843 CGCCTTGTCCTTCAGCTGC 61.685 63.158 9.47 0.00 0.00 5.25
472 476 2.684843 GCCTTGTCCTTCAGCTGCG 61.685 63.158 9.47 2.02 0.00 5.18
473 477 1.004560 CCTTGTCCTTCAGCTGCGA 60.005 57.895 9.47 0.96 0.00 5.10
474 478 1.294659 CCTTGTCCTTCAGCTGCGAC 61.295 60.000 9.47 14.28 0.00 5.19
475 479 0.320247 CTTGTCCTTCAGCTGCGACT 60.320 55.000 21.43 0.00 0.00 4.18
476 480 0.601046 TTGTCCTTCAGCTGCGACTG 60.601 55.000 21.43 0.00 39.12 3.51
555 570 0.254107 AGGAGGAGAGGAGGAGGAGT 60.254 60.000 0.00 0.00 0.00 3.85
558 573 1.423921 GAGGAGAGGAGGAGGAGTAGG 59.576 61.905 0.00 0.00 0.00 3.18
662 689 2.779033 CGTCGTAGTACCTGGGCCC 61.779 68.421 17.59 17.59 0.00 5.80
665 692 3.858225 GTAGTACCTGGGCCCGGC 61.858 72.222 26.87 12.15 0.00 6.13
679 725 1.682005 CCGGCCCAAACATGGTCAT 60.682 57.895 0.00 0.00 0.00 3.06
681 727 1.666209 CGGCCCAAACATGGTCATCC 61.666 60.000 0.00 0.00 0.00 3.51
684 730 1.666209 CCCAAACATGGTCATCCCGC 61.666 60.000 0.00 0.00 35.15 6.13
687 733 2.819984 AAACATGGTCATCCCGCGCT 62.820 55.000 5.56 0.00 35.15 5.92
688 734 2.514592 CATGGTCATCCCGCGCTT 60.515 61.111 5.56 0.00 35.15 4.68
689 735 1.227527 CATGGTCATCCCGCGCTTA 60.228 57.895 5.56 0.00 35.15 3.09
690 736 0.603707 CATGGTCATCCCGCGCTTAT 60.604 55.000 5.56 0.00 35.15 1.73
699 745 2.589492 CCGCGCTTATCTGCTTCCG 61.589 63.158 5.56 0.00 0.00 4.30
703 749 1.218230 CGCTTATCTGCTTCCGCTCC 61.218 60.000 0.00 0.00 36.97 4.70
704 750 1.218230 GCTTATCTGCTTCCGCTCCG 61.218 60.000 0.00 0.00 36.97 4.63
839 899 3.071206 TGTCTCCTCTCCTGGCGC 61.071 66.667 0.00 0.00 0.00 6.53
840 900 2.757917 GTCTCCTCTCCTGGCGCT 60.758 66.667 7.64 0.00 0.00 5.92
860 920 5.556570 GCGCTCTAAATTTCGGTGAATCTAC 60.557 44.000 0.00 0.00 0.00 2.59
861 921 5.331607 CGCTCTAAATTTCGGTGAATCTACG 60.332 44.000 0.00 0.00 0.00 3.51
862 922 5.556570 GCTCTAAATTTCGGTGAATCTACGC 60.557 44.000 0.00 0.00 0.00 4.42
873 933 2.609002 TGAATCTACGCATGCATGACAC 59.391 45.455 30.64 11.65 0.00 3.67
974 1046 1.522355 CGTGAGCTCCCGCATCAAT 60.522 57.895 12.15 0.00 39.10 2.57
977 1049 2.498167 GTGAGCTCCCGCATCAATATT 58.502 47.619 12.15 0.00 39.10 1.28
980 1052 3.141398 GAGCTCCCGCATCAATATTTCA 58.859 45.455 0.87 0.00 39.10 2.69
1016 1088 1.457346 GAAATGAGTGCAGGTGAGGG 58.543 55.000 0.00 0.00 0.00 4.30
1074 1146 4.503910 TGTCATGCATGTAGTAGGTTCAC 58.496 43.478 25.43 12.81 0.00 3.18
1082 1154 3.678289 TGTAGTAGGTTCACGCTCACTA 58.322 45.455 0.00 0.00 0.00 2.74
1083 1155 4.074259 TGTAGTAGGTTCACGCTCACTAA 58.926 43.478 0.00 0.00 0.00 2.24
1084 1156 3.572604 AGTAGGTTCACGCTCACTAAC 57.427 47.619 0.00 0.00 0.00 2.34
1085 1157 3.155501 AGTAGGTTCACGCTCACTAACT 58.844 45.455 0.00 0.00 0.00 2.24
1087 1159 2.755650 AGGTTCACGCTCACTAACTTG 58.244 47.619 0.00 0.00 0.00 3.16
1088 1160 1.798813 GGTTCACGCTCACTAACTTGG 59.201 52.381 0.00 0.00 0.00 3.61
1089 1161 1.194772 GTTCACGCTCACTAACTTGGC 59.805 52.381 0.00 0.00 0.00 4.52
1090 1162 0.391228 TCACGCTCACTAACTTGGCA 59.609 50.000 0.00 0.00 0.00 4.92
1091 1163 1.001974 TCACGCTCACTAACTTGGCAT 59.998 47.619 0.00 0.00 0.00 4.40
1092 1164 1.394917 CACGCTCACTAACTTGGCATC 59.605 52.381 0.00 0.00 0.00 3.91
1093 1165 1.001974 ACGCTCACTAACTTGGCATCA 59.998 47.619 0.00 0.00 0.00 3.07
1094 1166 2.283298 CGCTCACTAACTTGGCATCAT 58.717 47.619 0.00 0.00 0.00 2.45
1095 1167 3.118775 ACGCTCACTAACTTGGCATCATA 60.119 43.478 0.00 0.00 0.00 2.15
1096 1168 3.492383 CGCTCACTAACTTGGCATCATAG 59.508 47.826 0.00 0.00 0.00 2.23
1097 1169 4.697514 GCTCACTAACTTGGCATCATAGA 58.302 43.478 7.64 0.00 0.00 1.98
1098 1170 5.303971 GCTCACTAACTTGGCATCATAGAT 58.696 41.667 7.64 0.00 0.00 1.98
1099 1171 5.407995 GCTCACTAACTTGGCATCATAGATC 59.592 44.000 7.64 0.00 0.00 2.75
1100 1172 6.484364 TCACTAACTTGGCATCATAGATCA 57.516 37.500 0.00 0.00 0.00 2.92
1101 1173 7.071069 TCACTAACTTGGCATCATAGATCAT 57.929 36.000 0.00 0.00 0.00 2.45
1102 1174 8.193953 TCACTAACTTGGCATCATAGATCATA 57.806 34.615 0.00 0.00 0.00 2.15
1103 1175 8.309656 TCACTAACTTGGCATCATAGATCATAG 58.690 37.037 0.00 0.00 0.00 2.23
1104 1176 8.309656 CACTAACTTGGCATCATAGATCATAGA 58.690 37.037 0.00 0.00 0.00 1.98
1105 1177 9.044646 ACTAACTTGGCATCATAGATCATAGAT 57.955 33.333 0.00 0.00 0.00 1.98
1106 1178 9.531942 CTAACTTGGCATCATAGATCATAGATC 57.468 37.037 0.00 0.00 0.00 2.75
1107 1179 7.492077 ACTTGGCATCATAGATCATAGATCA 57.508 36.000 9.43 0.00 0.00 2.92
1108 1180 8.091952 ACTTGGCATCATAGATCATAGATCAT 57.908 34.615 9.43 0.00 0.00 2.45
1109 1181 9.210228 ACTTGGCATCATAGATCATAGATCATA 57.790 33.333 9.43 0.69 0.00 2.15
1110 1182 9.478768 CTTGGCATCATAGATCATAGATCATAC 57.521 37.037 9.43 0.00 0.00 2.39
1111 1183 8.779096 TGGCATCATAGATCATAGATCATACT 57.221 34.615 9.43 0.00 0.00 2.12
1112 1184 8.858094 TGGCATCATAGATCATAGATCATACTC 58.142 37.037 9.43 0.00 0.00 2.59
1113 1185 8.306038 GGCATCATAGATCATAGATCATACTCC 58.694 40.741 9.43 0.00 0.00 3.85
1114 1186 8.306038 GCATCATAGATCATAGATCATACTCCC 58.694 40.741 9.43 0.00 0.00 4.30
1115 1187 9.590828 CATCATAGATCATAGATCATACTCCCT 57.409 37.037 9.43 0.00 0.00 4.20
1116 1188 9.812347 ATCATAGATCATAGATCATACTCCCTC 57.188 37.037 9.43 0.00 0.00 4.30
1117 1189 8.224025 TCATAGATCATAGATCATACTCCCTCC 58.776 40.741 9.43 0.00 0.00 4.30
1118 1190 5.445069 AGATCATAGATCATACTCCCTCCG 58.555 45.833 9.43 0.00 0.00 4.63
1119 1191 4.659529 TCATAGATCATACTCCCTCCGT 57.340 45.455 0.00 0.00 0.00 4.69
1120 1192 4.590918 TCATAGATCATACTCCCTCCGTC 58.409 47.826 0.00 0.00 0.00 4.79
1121 1193 2.296073 AGATCATACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
1122 1194 0.882474 GATCATACTCCCTCCGTCCG 59.118 60.000 0.00 0.00 0.00 4.79
1123 1195 0.477204 ATCATACTCCCTCCGTCCGA 59.523 55.000 0.00 0.00 0.00 4.55
1124 1196 0.256752 TCATACTCCCTCCGTCCGAA 59.743 55.000 0.00 0.00 0.00 4.30
1125 1197 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
1126 1198 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
1127 1199 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1128 1200 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1129 1201 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1130 1202 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1131 1203 1.753073 TCCCTCCGTCCGAAAATACTC 59.247 52.381 0.00 0.00 0.00 2.59
1132 1204 1.535437 CCCTCCGTCCGAAAATACTCG 60.535 57.143 0.00 0.00 38.58 4.18
1133 1205 1.133790 CCTCCGTCCGAAAATACTCGT 59.866 52.381 0.00 0.00 37.11 4.18
1134 1206 2.448219 CTCCGTCCGAAAATACTCGTC 58.552 52.381 0.00 0.00 37.11 4.20
1135 1207 1.811965 TCCGTCCGAAAATACTCGTCA 59.188 47.619 0.00 0.00 37.11 4.35
1136 1208 2.424601 TCCGTCCGAAAATACTCGTCAT 59.575 45.455 0.00 0.00 37.11 3.06
1137 1209 3.119388 TCCGTCCGAAAATACTCGTCATT 60.119 43.478 0.00 0.00 37.11 2.57
1138 1210 4.096231 TCCGTCCGAAAATACTCGTCATTA 59.904 41.667 0.00 0.00 37.11 1.90
1139 1211 4.799949 CCGTCCGAAAATACTCGTCATTAA 59.200 41.667 0.00 0.00 37.11 1.40
1140 1212 5.289193 CCGTCCGAAAATACTCGTCATTAAA 59.711 40.000 0.00 0.00 37.11 1.52
1141 1213 6.183360 CCGTCCGAAAATACTCGTCATTAAAA 60.183 38.462 0.00 0.00 37.11 1.52
1142 1214 7.396419 CGTCCGAAAATACTCGTCATTAAAAT 58.604 34.615 0.00 0.00 37.11 1.82
1143 1215 7.369800 CGTCCGAAAATACTCGTCATTAAAATG 59.630 37.037 0.00 0.00 37.11 2.32
1144 1216 7.638683 GTCCGAAAATACTCGTCATTAAAATGG 59.361 37.037 3.00 0.00 37.11 3.16
1145 1217 7.549842 TCCGAAAATACTCGTCATTAAAATGGA 59.450 33.333 3.00 0.00 37.11 3.41
1146 1218 8.342634 CCGAAAATACTCGTCATTAAAATGGAT 58.657 33.333 3.00 0.00 37.11 3.41
1214 1286 9.865321 CATCTTTTATCCATTTTGATGACAAGT 57.135 29.630 0.00 0.00 37.32 3.16
1221 1293 7.773489 TCCATTTTGATGACAAGTATTTCCA 57.227 32.000 0.00 0.00 37.32 3.53
1223 1295 7.669304 TCCATTTTGATGACAAGTATTTCCAGA 59.331 33.333 0.00 0.00 37.32 3.86
1224 1296 7.756722 CCATTTTGATGACAAGTATTTCCAGAC 59.243 37.037 0.00 0.00 37.32 3.51
1225 1297 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
1226 1298 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
1227 1299 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
1228 1300 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
1230 1302 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
1231 1303 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
1232 1304 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
1234 1306 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
1243 1320 2.879646 GACGGAGGGAGTACATCACTAG 59.120 54.545 0.00 0.00 43.76 2.57
1292 1369 2.226674 GCTGCTTAACCTTGTGACTTCC 59.773 50.000 0.00 0.00 0.00 3.46
1339 1416 3.075005 GGAGCGAGGCCTGTACCA 61.075 66.667 12.00 0.00 0.00 3.25
1366 1443 1.765597 AAGGTGTGTTCCCCCTCGAC 61.766 60.000 0.00 0.00 0.00 4.20
1394 1471 0.601558 TGAGTGCGACCTGGTAAGTC 59.398 55.000 0.00 2.01 0.00 3.01
1467 1544 3.351740 TGAGAGTTGCCTGTTCAAACAA 58.648 40.909 0.00 0.00 38.66 2.83
1468 1545 3.761218 TGAGAGTTGCCTGTTCAAACAAA 59.239 39.130 0.00 0.00 38.66 2.83
1469 1546 4.219507 TGAGAGTTGCCTGTTCAAACAAAA 59.780 37.500 0.00 0.00 38.66 2.44
1470 1547 4.494484 AGAGTTGCCTGTTCAAACAAAAC 58.506 39.130 0.00 3.18 38.66 2.43
1471 1548 4.021544 AGAGTTGCCTGTTCAAACAAAACA 60.022 37.500 13.65 0.00 38.66 2.83
1505 1582 1.386533 ATCTTGCCTGCCTGAAATCG 58.613 50.000 0.00 0.00 0.00 3.34
1529 1606 3.080319 AGGAGCTCAGTCTGAAAAATGC 58.920 45.455 17.19 3.53 0.00 3.56
1574 1651 3.455910 TGGAATGTAGGATGGAGAGGTTG 59.544 47.826 0.00 0.00 0.00 3.77
1594 1671 1.406539 GGCATGCTTATTCCCTGTGTG 59.593 52.381 18.92 0.00 0.00 3.82
1598 1675 3.266510 TGCTTATTCCCTGTGTGCTAG 57.733 47.619 0.00 0.00 0.00 3.42
1656 1739 4.854399 TCACCTGTTTTTATTTCGCACAG 58.146 39.130 0.00 0.00 35.59 3.66
1698 1789 2.463589 TTAGGGTGCACTTGCCTCGG 62.464 60.000 17.98 0.00 41.18 4.63
1860 1961 3.064408 CGCAGCATGTTAACATCATGTCT 59.936 43.478 18.25 8.11 42.94 3.41
1864 1965 6.255950 CAGCATGTTAACATCATGTCTTGAG 58.744 40.000 18.25 4.69 42.94 3.02
2036 2137 2.303175 GGGAAGCAACCAACAGTGTTA 58.697 47.619 8.49 0.00 0.00 2.41
2040 2141 2.944129 AGCAACCAACAGTGTTACCAT 58.056 42.857 8.49 0.00 0.00 3.55
2069 2173 8.512138 AGGCAACAAATATGTAACTACTTGTTC 58.488 33.333 0.00 0.00 39.40 3.18
2115 2227 5.063438 GTGCTTGCAGTAGTTGATATTTCGA 59.937 40.000 0.00 0.00 0.00 3.71
2118 2230 7.494298 TGCTTGCAGTAGTTGATATTTCGAATA 59.506 33.333 0.00 0.00 0.00 1.75
2190 2309 6.949352 ACTTTGACATCTGAAATTCACTGT 57.051 33.333 6.25 6.25 0.00 3.55
2247 2370 0.604578 TTTTGGCTTGATGCTGCTCC 59.395 50.000 0.00 0.00 42.39 4.70
2336 2459 1.002087 CGGAGCTTGGGTTCAGTAACT 59.998 52.381 0.00 0.00 35.81 2.24
2382 2505 5.496556 TGAGAAGAACAACAAACTGGAGAA 58.503 37.500 0.00 0.00 0.00 2.87
2426 2549 5.006386 AGAAGAAATAGCTGTTCAACCTGG 58.994 41.667 12.84 0.00 0.00 4.45
2458 2581 8.592998 CCTTATCTAACGGTTAATATCATTCGC 58.407 37.037 1.79 0.00 0.00 4.70
2540 2667 6.666678 AGGGCAAAAGAATAATCATGAGAGA 58.333 36.000 0.09 0.00 0.00 3.10
2541 2668 6.771749 AGGGCAAAAGAATAATCATGAGAGAG 59.228 38.462 0.09 0.00 0.00 3.20
2650 2778 5.065914 TGCTGAACCCTAATAATCATGAGC 58.934 41.667 0.09 0.00 0.00 4.26
2656 2784 2.417933 CCTAATAATCATGAGCTGCGGC 59.582 50.000 10.33 10.33 39.06 6.53
2657 2785 1.971481 AATAATCATGAGCTGCGGCA 58.029 45.000 21.93 1.29 41.70 5.69
2667 2795 2.433838 CTGCGGCAGTGACCAGAG 60.434 66.667 21.60 0.00 0.00 3.35
2675 2803 1.069765 AGTGACCAGAGCACCAACG 59.930 57.895 0.00 0.00 36.95 4.10
2709 2837 5.305812 CGTTACTAAAATCAGCTTGTGACG 58.694 41.667 0.00 0.00 38.28 4.35
2813 2959 8.013667 AGTCTATATCCCCTAAAAGATGACACT 58.986 37.037 0.00 0.00 0.00 3.55
2876 3065 2.126071 ATGTTGTCGCCGGTCTCG 60.126 61.111 1.90 0.00 0.00 4.04
2877 3066 2.927580 ATGTTGTCGCCGGTCTCGT 61.928 57.895 1.90 0.00 33.95 4.18
2882 3071 4.063967 TCGCCGGTCTCGTTGCAT 62.064 61.111 1.90 0.00 33.95 3.96
2883 3072 3.118454 CGCCGGTCTCGTTGCATT 61.118 61.111 1.90 0.00 33.95 3.56
2884 3073 2.480555 GCCGGTCTCGTTGCATTG 59.519 61.111 1.90 0.00 33.95 2.82
2885 3074 2.480555 CCGGTCTCGTTGCATTGC 59.519 61.111 0.46 0.46 33.95 3.56
2886 3075 2.034879 CCGGTCTCGTTGCATTGCT 61.035 57.895 10.49 0.00 33.95 3.91
2887 3076 1.133253 CGGTCTCGTTGCATTGCTG 59.867 57.895 10.49 0.12 0.00 4.41
2888 3077 1.503542 GGTCTCGTTGCATTGCTGG 59.496 57.895 10.49 0.00 0.00 4.85
2889 3078 1.154150 GTCTCGTTGCATTGCTGGC 60.154 57.895 10.49 0.00 0.00 4.85
2890 3079 2.180017 CTCGTTGCATTGCTGGCC 59.820 61.111 10.49 0.00 0.00 5.36
2891 3080 2.596923 TCGTTGCATTGCTGGCCA 60.597 55.556 4.71 4.71 0.00 5.36
2892 3081 2.431260 CGTTGCATTGCTGGCCAC 60.431 61.111 0.00 0.00 0.00 5.01
2893 3082 2.431260 GTTGCATTGCTGGCCACG 60.431 61.111 0.00 0.00 0.00 4.94
2894 3083 3.682885 TTGCATTGCTGGCCACGG 61.683 61.111 0.00 0.00 0.00 4.94
2913 3102 3.715628 GGCCGATGCTGAAAATATGTT 57.284 42.857 0.00 0.00 37.74 2.71
2914 3103 4.045636 GGCCGATGCTGAAAATATGTTT 57.954 40.909 0.00 0.00 37.74 2.83
2915 3104 4.044426 GGCCGATGCTGAAAATATGTTTC 58.956 43.478 0.00 0.00 37.74 2.78
2916 3105 3.725740 GCCGATGCTGAAAATATGTTTCG 59.274 43.478 0.00 0.00 33.53 3.46
2917 3106 4.495679 GCCGATGCTGAAAATATGTTTCGA 60.496 41.667 0.00 0.00 33.53 3.71
2918 3107 5.751680 CCGATGCTGAAAATATGTTTCGAT 58.248 37.500 0.00 0.00 0.00 3.59
2919 3108 5.848036 CCGATGCTGAAAATATGTTTCGATC 59.152 40.000 0.00 0.00 0.00 3.69
2920 3109 6.293081 CCGATGCTGAAAATATGTTTCGATCT 60.293 38.462 0.00 0.00 0.00 2.75
2921 3110 6.789403 CGATGCTGAAAATATGTTTCGATCTC 59.211 38.462 0.00 0.00 0.00 2.75
2922 3111 6.363577 TGCTGAAAATATGTTTCGATCTCC 57.636 37.500 0.00 0.00 0.00 3.71
2923 3112 5.296780 TGCTGAAAATATGTTTCGATCTCCC 59.703 40.000 0.00 0.00 0.00 4.30
2924 3113 5.278022 GCTGAAAATATGTTTCGATCTCCCC 60.278 44.000 0.00 0.00 0.00 4.81
2925 3114 5.750524 TGAAAATATGTTTCGATCTCCCCA 58.249 37.500 0.00 0.00 0.00 4.96
2926 3115 5.588648 TGAAAATATGTTTCGATCTCCCCAC 59.411 40.000 0.00 0.00 0.00 4.61
2927 3116 5.373812 AAATATGTTTCGATCTCCCCACT 57.626 39.130 0.00 0.00 0.00 4.00
2928 3117 5.373812 AATATGTTTCGATCTCCCCACTT 57.626 39.130 0.00 0.00 0.00 3.16
2929 3118 3.721087 ATGTTTCGATCTCCCCACTTT 57.279 42.857 0.00 0.00 0.00 2.66
2930 3119 3.502123 TGTTTCGATCTCCCCACTTTT 57.498 42.857 0.00 0.00 0.00 2.27
2931 3120 3.146066 TGTTTCGATCTCCCCACTTTTG 58.854 45.455 0.00 0.00 0.00 2.44
2932 3121 3.146847 GTTTCGATCTCCCCACTTTTGT 58.853 45.455 0.00 0.00 0.00 2.83
2950 3139 8.672815 CACTTTTGTGGTTAATGGAAAATTTGT 58.327 29.630 0.00 0.00 46.16 2.83
2951 3140 9.237187 ACTTTTGTGGTTAATGGAAAATTTGTT 57.763 25.926 0.00 0.00 0.00 2.83
2952 3141 9.715123 CTTTTGTGGTTAATGGAAAATTTGTTC 57.285 29.630 0.00 0.00 0.00 3.18
2953 3142 8.792830 TTTGTGGTTAATGGAAAATTTGTTCA 57.207 26.923 0.00 0.00 0.00 3.18
2954 3143 8.970859 TTGTGGTTAATGGAAAATTTGTTCAT 57.029 26.923 0.00 0.00 0.00 2.57
2955 3144 8.375608 TGTGGTTAATGGAAAATTTGTTCATG 57.624 30.769 0.00 0.00 0.00 3.07
2956 3145 7.989741 TGTGGTTAATGGAAAATTTGTTCATGT 59.010 29.630 0.00 0.00 0.00 3.21
2957 3146 8.495148 GTGGTTAATGGAAAATTTGTTCATGTC 58.505 33.333 0.00 0.00 0.00 3.06
2958 3147 7.383572 TGGTTAATGGAAAATTTGTTCATGTCG 59.616 33.333 0.00 0.00 0.00 4.35
2959 3148 7.148656 GGTTAATGGAAAATTTGTTCATGTCGG 60.149 37.037 0.00 0.00 0.00 4.79
2960 3149 3.648009 TGGAAAATTTGTTCATGTCGGC 58.352 40.909 0.00 0.00 0.00 5.54
2961 3150 3.320541 TGGAAAATTTGTTCATGTCGGCT 59.679 39.130 0.00 0.00 0.00 5.52
2962 3151 4.202202 TGGAAAATTTGTTCATGTCGGCTT 60.202 37.500 0.00 0.00 0.00 4.35
2963 3152 4.749598 GGAAAATTTGTTCATGTCGGCTTT 59.250 37.500 0.00 0.00 0.00 3.51
2964 3153 5.236263 GGAAAATTTGTTCATGTCGGCTTTT 59.764 36.000 0.00 0.00 0.00 2.27
2965 3154 5.655893 AAATTTGTTCATGTCGGCTTTTG 57.344 34.783 0.00 0.00 0.00 2.44
2966 3155 2.132740 TTGTTCATGTCGGCTTTTGC 57.867 45.000 0.00 0.00 46.64 3.68
2985 3174 2.591915 CCCCCTAGACGCTTTCAGA 58.408 57.895 0.00 0.00 0.00 3.27
2986 3175 0.902531 CCCCCTAGACGCTTTCAGAA 59.097 55.000 0.00 0.00 0.00 3.02
2987 3176 1.278127 CCCCCTAGACGCTTTCAGAAA 59.722 52.381 0.00 0.00 0.00 2.52
2988 3177 2.290071 CCCCCTAGACGCTTTCAGAAAA 60.290 50.000 0.00 0.00 0.00 2.29
2989 3178 2.742589 CCCCTAGACGCTTTCAGAAAAC 59.257 50.000 0.00 0.00 0.00 2.43
2990 3179 3.399330 CCCTAGACGCTTTCAGAAAACA 58.601 45.455 0.00 0.00 0.00 2.83
2991 3180 4.003648 CCCTAGACGCTTTCAGAAAACAT 58.996 43.478 0.00 0.00 0.00 2.71
2992 3181 4.142816 CCCTAGACGCTTTCAGAAAACATG 60.143 45.833 0.00 0.00 0.00 3.21
2993 3182 4.452455 CCTAGACGCTTTCAGAAAACATGT 59.548 41.667 0.00 0.00 0.00 3.21
2994 3183 4.900635 AGACGCTTTCAGAAAACATGTT 57.099 36.364 4.92 4.92 0.00 2.71
2995 3184 4.601019 AGACGCTTTCAGAAAACATGTTG 58.399 39.130 12.82 0.00 0.00 3.33
2996 3185 4.096382 AGACGCTTTCAGAAAACATGTTGT 59.904 37.500 12.82 6.37 0.00 3.32
2997 3186 4.351192 ACGCTTTCAGAAAACATGTTGTC 58.649 39.130 19.44 19.44 0.00 3.18
2998 3187 3.730715 CGCTTTCAGAAAACATGTTGTCC 59.269 43.478 22.62 10.36 0.00 4.02
2999 3188 4.051237 GCTTTCAGAAAACATGTTGTCCC 58.949 43.478 22.62 8.10 0.00 4.46
3000 3189 3.980646 TTCAGAAAACATGTTGTCCCG 57.019 42.857 22.62 15.29 0.00 5.14
3001 3190 2.925724 TCAGAAAACATGTTGTCCCGT 58.074 42.857 22.62 4.32 0.00 5.28
3002 3191 2.616376 TCAGAAAACATGTTGTCCCGTG 59.384 45.455 22.62 15.48 0.00 4.94
3003 3192 2.616376 CAGAAAACATGTTGTCCCGTGA 59.384 45.455 22.62 0.00 0.00 4.35
3004 3193 3.253188 CAGAAAACATGTTGTCCCGTGAT 59.747 43.478 22.62 2.91 0.00 3.06
3005 3194 3.888930 AGAAAACATGTTGTCCCGTGATT 59.111 39.130 22.62 5.68 0.00 2.57
3006 3195 4.340950 AGAAAACATGTTGTCCCGTGATTT 59.659 37.500 22.62 4.97 31.48 2.17
3007 3196 4.664150 AAACATGTTGTCCCGTGATTTT 57.336 36.364 12.82 0.00 0.00 1.82
3008 3197 3.915437 ACATGTTGTCCCGTGATTTTC 57.085 42.857 0.00 0.00 0.00 2.29
3009 3198 3.486383 ACATGTTGTCCCGTGATTTTCT 58.514 40.909 0.00 0.00 0.00 2.52
3010 3199 4.647611 ACATGTTGTCCCGTGATTTTCTA 58.352 39.130 0.00 0.00 0.00 2.10
3011 3200 5.253330 ACATGTTGTCCCGTGATTTTCTAT 58.747 37.500 0.00 0.00 0.00 1.98
3012 3201 5.123820 ACATGTTGTCCCGTGATTTTCTATG 59.876 40.000 0.00 0.00 0.00 2.23
3013 3202 3.438781 TGTTGTCCCGTGATTTTCTATGC 59.561 43.478 0.00 0.00 0.00 3.14
3014 3203 2.639065 TGTCCCGTGATTTTCTATGCC 58.361 47.619 0.00 0.00 0.00 4.40
3015 3204 2.026729 TGTCCCGTGATTTTCTATGCCA 60.027 45.455 0.00 0.00 0.00 4.92
3016 3205 3.013921 GTCCCGTGATTTTCTATGCCAA 58.986 45.455 0.00 0.00 0.00 4.52
3017 3206 3.065371 GTCCCGTGATTTTCTATGCCAAG 59.935 47.826 0.00 0.00 0.00 3.61
3018 3207 3.054728 TCCCGTGATTTTCTATGCCAAGA 60.055 43.478 0.00 0.00 0.00 3.02
3019 3208 3.694072 CCCGTGATTTTCTATGCCAAGAA 59.306 43.478 0.00 0.00 33.69 2.52
3020 3209 4.157656 CCCGTGATTTTCTATGCCAAGAAA 59.842 41.667 6.50 6.50 42.32 2.52
3044 3233 7.495135 AAAAACATGTTGTCCCATGATTTTC 57.505 32.000 12.82 0.00 46.18 2.29
3045 3234 6.423776 AAACATGTTGTCCCATGATTTTCT 57.576 33.333 12.82 0.00 43.99 2.52
3046 3235 7.537596 AAACATGTTGTCCCATGATTTTCTA 57.462 32.000 12.82 0.00 43.99 2.10
3047 3236 6.764308 ACATGTTGTCCCATGATTTTCTAG 57.236 37.500 8.06 0.00 43.99 2.43
3048 3237 5.653769 ACATGTTGTCCCATGATTTTCTAGG 59.346 40.000 8.06 0.00 43.99 3.02
3049 3238 4.599041 TGTTGTCCCATGATTTTCTAGGG 58.401 43.478 0.00 0.00 40.98 3.53
3050 3239 3.297134 TGTCCCATGATTTTCTAGGGC 57.703 47.619 0.00 0.00 39.42 5.19
3051 3240 2.580322 TGTCCCATGATTTTCTAGGGCA 59.420 45.455 0.00 0.00 39.42 5.36
3052 3241 3.011144 TGTCCCATGATTTTCTAGGGCAA 59.989 43.478 0.00 0.00 39.42 4.52
3053 3242 4.023291 GTCCCATGATTTTCTAGGGCAAA 58.977 43.478 0.00 0.00 39.42 3.68
3054 3243 4.466015 GTCCCATGATTTTCTAGGGCAAAA 59.534 41.667 0.00 0.00 39.42 2.44
3055 3244 5.046663 GTCCCATGATTTTCTAGGGCAAAAA 60.047 40.000 0.00 0.00 39.42 1.94
3087 3276 0.249031 GCCTGACAAAGCAAGCGTTT 60.249 50.000 0.00 0.00 0.00 3.60
3088 3277 1.480205 CCTGACAAAGCAAGCGTTTG 58.520 50.000 7.74 7.74 40.18 2.93
3100 3289 4.048504 GCAAGCGTTTGTTCCTTGTTAAT 58.951 39.130 13.73 0.00 38.50 1.40
3102 3291 5.116528 GCAAGCGTTTGTTCCTTGTTAATAC 59.883 40.000 13.73 0.00 38.50 1.89
3115 3304 7.388437 TCCTTGTTAATACCGTCAAACTGTAT 58.612 34.615 0.00 0.00 31.24 2.29
3143 3332 8.697507 AAGGTTTCTTCATATCAGTTCTTGTT 57.302 30.769 0.00 0.00 0.00 2.83
3144 3333 8.103948 AGGTTTCTTCATATCAGTTCTTGTTG 57.896 34.615 0.00 0.00 0.00 3.33
3149 3338 8.327941 TCTTCATATCAGTTCTTGTTGGAAAG 57.672 34.615 0.00 0.00 0.00 2.62
3156 3345 1.032014 TCTTGTTGGAAAGGCACAGC 58.968 50.000 0.00 0.00 0.00 4.40
3173 3362 2.582959 GCAGTCGCTACAGGATTCG 58.417 57.895 0.00 0.00 34.30 3.34
3208 3397 7.502226 TGTGTCCTTGTTTATTTGATCTGTTCT 59.498 33.333 0.00 0.00 0.00 3.01
3209 3398 7.805071 GTGTCCTTGTTTATTTGATCTGTTCTG 59.195 37.037 0.00 0.00 0.00 3.02
3210 3399 7.040478 TGTCCTTGTTTATTTGATCTGTTCTGG 60.040 37.037 0.00 0.00 0.00 3.86
3222 3411 7.429374 TGATCTGTTCTGGATTGTCTTCTAT 57.571 36.000 0.00 0.00 0.00 1.98
3231 3420 4.202441 GGATTGTCTTCTATGCATGTGGT 58.798 43.478 10.16 0.00 0.00 4.16
3267 3456 7.816640 TGTCGATCTTTTCCTAATTCCTTTTG 58.183 34.615 0.00 0.00 0.00 2.44
3273 3462 5.722021 TTTCCTAATTCCTTTTGCTCCAC 57.278 39.130 0.00 0.00 0.00 4.02
3286 3475 2.972625 TGCTCCACGGAGATACTTTTG 58.027 47.619 17.47 0.00 44.53 2.44
3290 3479 4.215613 GCTCCACGGAGATACTTTTGTTTT 59.784 41.667 17.47 0.00 44.53 2.43
3291 3480 5.410439 GCTCCACGGAGATACTTTTGTTTTA 59.590 40.000 17.47 0.00 44.53 1.52
3292 3481 6.093633 GCTCCACGGAGATACTTTTGTTTTAT 59.906 38.462 17.47 0.00 44.53 1.40
3293 3482 7.605410 TCCACGGAGATACTTTTGTTTTATC 57.395 36.000 0.00 0.00 0.00 1.75
3294 3483 7.391620 TCCACGGAGATACTTTTGTTTTATCT 58.608 34.615 0.00 0.00 30.38 1.98
3296 3485 9.158233 CCACGGAGATACTTTTGTTTTATCTTA 57.842 33.333 0.00 0.00 28.52 2.10
3322 3511 8.735303 TTACAAAACAAACAATGTATGATCCG 57.265 30.769 0.00 0.00 42.99 4.18
3323 3512 5.633182 ACAAAACAAACAATGTATGATCCGC 59.367 36.000 0.00 0.00 42.99 5.54
3324 3513 5.384063 AAACAAACAATGTATGATCCGCA 57.616 34.783 0.00 0.00 42.99 5.69
3325 3514 5.384063 AACAAACAATGTATGATCCGCAA 57.616 34.783 0.00 0.00 42.99 4.85
3326 3515 5.384063 ACAAACAATGTATGATCCGCAAA 57.616 34.783 0.00 0.00 41.63 3.68
3327 3516 5.777802 ACAAACAATGTATGATCCGCAAAA 58.222 33.333 0.00 0.00 41.63 2.44
3328 3517 6.219473 ACAAACAATGTATGATCCGCAAAAA 58.781 32.000 0.00 0.00 41.63 1.94
3384 3644 2.232941 CCGACTTTGGGCTACTCAACTA 59.767 50.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
567 582 3.119919 GCGGTCTCGTATAATAGGGTCTG 60.120 52.174 0.00 0.00 38.89 3.51
667 694 1.429021 CGCGGGATGACCATGTTTG 59.571 57.895 0.00 0.00 40.22 2.93
672 718 0.320771 GATAAGCGCGGGATGACCAT 60.321 55.000 8.83 0.00 40.22 3.55
673 719 1.069090 GATAAGCGCGGGATGACCA 59.931 57.895 8.83 0.00 40.22 4.02
679 725 1.227263 GAAGCAGATAAGCGCGGGA 60.227 57.895 8.83 0.00 40.15 5.14
681 727 2.589492 CGGAAGCAGATAAGCGCGG 61.589 63.158 8.83 0.00 40.15 6.46
710 756 4.882396 GAGGGAGGAAGCTCGCGC 62.882 72.222 0.00 0.00 40.61 6.86
711 757 3.132481 GAGAGGGAGGAAGCTCGCG 62.132 68.421 0.00 0.00 40.61 5.87
712 758 2.811799 GAGAGGGAGGAAGCTCGC 59.188 66.667 0.00 0.00 36.68 5.03
713 759 3.115556 CGAGAGGGAGGAAGCTCG 58.884 66.667 0.00 0.00 43.25 5.03
714 760 1.756561 AGCGAGAGGGAGGAAGCTC 60.757 63.158 0.00 0.00 0.00 4.09
715 761 2.057408 CAGCGAGAGGGAGGAAGCT 61.057 63.158 0.00 0.00 35.06 3.74
716 762 2.498726 CAGCGAGAGGGAGGAAGC 59.501 66.667 0.00 0.00 0.00 3.86
808 864 1.000283 GGAGACACTCACAGGTCACAG 60.000 57.143 0.00 0.00 36.50 3.66
839 899 5.518847 TGCGTAGATTCACCGAAATTTAGAG 59.481 40.000 0.00 0.00 0.00 2.43
840 900 5.412640 TGCGTAGATTCACCGAAATTTAGA 58.587 37.500 0.00 0.00 0.00 2.10
860 920 2.795973 CCCAGTGTCATGCATGCG 59.204 61.111 22.25 7.28 0.00 4.73
861 921 2.493030 GCCCAGTGTCATGCATGC 59.507 61.111 22.25 11.82 0.00 4.06
862 922 2.795973 CGCCCAGTGTCATGCATG 59.204 61.111 21.07 21.07 0.00 4.06
917 986 0.179048 TGACACAGGGCACAAGTCAG 60.179 55.000 4.31 0.00 34.59 3.51
966 1038 6.635641 CACTTGAGGATTGAAATATTGATGCG 59.364 38.462 0.00 0.00 0.00 4.73
974 1046 4.706476 CCCAAGCACTTGAGGATTGAAATA 59.294 41.667 11.94 0.00 42.93 1.40
977 1049 2.108075 TCCCAAGCACTTGAGGATTGAA 59.892 45.455 11.94 0.00 42.93 2.69
980 1052 2.978156 TTCCCAAGCACTTGAGGATT 57.022 45.000 11.94 0.00 42.93 3.01
1074 1146 1.725641 TGATGCCAAGTTAGTGAGCG 58.274 50.000 0.00 0.00 0.00 5.03
1082 1154 7.914859 TGATCTATGATCTATGATGCCAAGTT 58.085 34.615 8.71 0.00 0.00 2.66
1083 1155 7.492077 TGATCTATGATCTATGATGCCAAGT 57.508 36.000 8.71 0.00 0.00 3.16
1084 1156 9.478768 GTATGATCTATGATCTATGATGCCAAG 57.521 37.037 8.71 0.00 0.00 3.61
1085 1157 9.210228 AGTATGATCTATGATCTATGATGCCAA 57.790 33.333 8.71 0.00 0.00 4.52
1087 1159 8.306038 GGAGTATGATCTATGATCTATGATGCC 58.694 40.741 8.71 0.00 0.00 4.40
1088 1160 8.306038 GGGAGTATGATCTATGATCTATGATGC 58.694 40.741 8.71 0.00 0.00 3.91
1089 1161 9.590828 AGGGAGTATGATCTATGATCTATGATG 57.409 37.037 8.71 0.00 0.00 3.07
1090 1162 9.812347 GAGGGAGTATGATCTATGATCTATGAT 57.188 37.037 8.71 0.00 0.00 2.45
1091 1163 8.224025 GGAGGGAGTATGATCTATGATCTATGA 58.776 40.741 8.71 0.00 0.00 2.15
1092 1164 7.174772 CGGAGGGAGTATGATCTATGATCTATG 59.825 44.444 8.71 0.00 0.00 2.23
1093 1165 7.147213 ACGGAGGGAGTATGATCTATGATCTAT 60.147 40.741 8.71 4.28 0.00 1.98
1094 1166 6.158871 ACGGAGGGAGTATGATCTATGATCTA 59.841 42.308 8.71 0.00 0.00 1.98
1095 1167 5.044476 ACGGAGGGAGTATGATCTATGATCT 60.044 44.000 8.71 0.00 0.00 2.75
1096 1168 5.197451 ACGGAGGGAGTATGATCTATGATC 58.803 45.833 0.00 0.98 0.00 2.92
1097 1169 5.197451 GACGGAGGGAGTATGATCTATGAT 58.803 45.833 0.00 0.00 0.00 2.45
1098 1170 4.567958 GGACGGAGGGAGTATGATCTATGA 60.568 50.000 0.00 0.00 0.00 2.15
1099 1171 3.697045 GGACGGAGGGAGTATGATCTATG 59.303 52.174 0.00 0.00 0.00 2.23
1100 1172 3.622704 CGGACGGAGGGAGTATGATCTAT 60.623 52.174 0.00 0.00 0.00 1.98
1101 1173 2.290134 CGGACGGAGGGAGTATGATCTA 60.290 54.545 0.00 0.00 0.00 1.98
1102 1174 1.545875 CGGACGGAGGGAGTATGATCT 60.546 57.143 0.00 0.00 0.00 2.75
1103 1175 0.882474 CGGACGGAGGGAGTATGATC 59.118 60.000 0.00 0.00 0.00 2.92
1104 1176 0.477204 TCGGACGGAGGGAGTATGAT 59.523 55.000 0.00 0.00 0.00 2.45
1105 1177 0.256752 TTCGGACGGAGGGAGTATGA 59.743 55.000 0.00 0.00 0.00 2.15
1106 1178 1.108776 TTTCGGACGGAGGGAGTATG 58.891 55.000 0.00 0.00 0.00 2.39
1107 1179 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
1108 1180 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
1109 1181 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1110 1182 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1111 1183 1.753073 GAGTATTTTCGGACGGAGGGA 59.247 52.381 0.00 0.00 0.00 4.20
1112 1184 1.535437 CGAGTATTTTCGGACGGAGGG 60.535 57.143 0.00 0.00 36.95 4.30
1113 1185 1.133790 ACGAGTATTTTCGGACGGAGG 59.866 52.381 0.00 0.00 44.57 4.30
1114 1186 2.159476 TGACGAGTATTTTCGGACGGAG 60.159 50.000 0.00 0.00 44.57 4.63
1115 1187 1.811965 TGACGAGTATTTTCGGACGGA 59.188 47.619 0.00 0.00 44.57 4.69
1116 1188 2.267188 TGACGAGTATTTTCGGACGG 57.733 50.000 0.00 0.00 44.57 4.79
1117 1189 5.937165 TTAATGACGAGTATTTTCGGACG 57.063 39.130 0.00 0.00 44.57 4.79
1118 1190 7.638683 CCATTTTAATGACGAGTATTTTCGGAC 59.361 37.037 4.07 0.00 38.70 4.79
1119 1191 7.549842 TCCATTTTAATGACGAGTATTTTCGGA 59.450 33.333 4.07 0.00 38.70 4.55
1120 1192 7.690228 TCCATTTTAATGACGAGTATTTTCGG 58.310 34.615 4.07 0.00 38.70 4.30
1188 1260 9.865321 ACTTGTCATCAAAATGGATAAAAGATG 57.135 29.630 0.00 0.00 33.42 2.90
1195 1267 9.473007 TGGAAATACTTGTCATCAAAATGGATA 57.527 29.630 0.00 0.00 33.42 2.59
1196 1268 8.365060 TGGAAATACTTGTCATCAAAATGGAT 57.635 30.769 0.00 0.00 33.42 3.41
1197 1269 7.669304 TCTGGAAATACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
1198 1270 7.756722 GTCTGGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
1199 1271 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
1200 1272 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
1201 1273 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
1202 1274 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
1203 1275 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
1205 1277 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
1206 1278 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
1207 1279 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
1208 1280 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
1209 1281 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
1211 1283 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
1212 1284 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
1213 1285 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
1214 1286 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
1215 1287 2.108970 GTACTCCCTCCGTCTGGAAAT 58.891 52.381 0.00 0.00 45.87 2.17
1216 1288 1.203087 TGTACTCCCTCCGTCTGGAAA 60.203 52.381 0.00 0.00 45.87 3.13
1217 1289 0.406750 TGTACTCCCTCCGTCTGGAA 59.593 55.000 0.00 0.00 45.87 3.53
1218 1290 0.629596 ATGTACTCCCTCCGTCTGGA 59.370 55.000 0.00 0.00 43.88 3.86
1220 1292 1.405821 GTGATGTACTCCCTCCGTCTG 59.594 57.143 0.00 0.00 0.00 3.51
1221 1293 1.285373 AGTGATGTACTCCCTCCGTCT 59.715 52.381 0.00 0.00 33.17 4.18
1223 1295 2.933573 CTAGTGATGTACTCCCTCCGT 58.066 52.381 0.00 0.00 40.89 4.69
1224 1296 1.609555 GCTAGTGATGTACTCCCTCCG 59.390 57.143 0.00 0.00 40.89 4.63
1225 1297 2.952116 AGCTAGTGATGTACTCCCTCC 58.048 52.381 0.00 0.00 40.89 4.30
1226 1298 3.068873 CCAAGCTAGTGATGTACTCCCTC 59.931 52.174 0.00 0.00 40.89 4.30
1227 1299 3.034635 CCAAGCTAGTGATGTACTCCCT 58.965 50.000 0.00 0.00 40.89 4.20
1228 1300 2.483889 GCCAAGCTAGTGATGTACTCCC 60.484 54.545 0.00 0.00 40.89 4.30
1230 1302 3.526931 TGCCAAGCTAGTGATGTACTC 57.473 47.619 0.00 0.00 40.89 2.59
1231 1303 3.452264 TGATGCCAAGCTAGTGATGTACT 59.548 43.478 0.00 0.00 43.56 2.73
1232 1304 3.797039 TGATGCCAAGCTAGTGATGTAC 58.203 45.455 0.00 0.00 0.00 2.90
1234 1306 3.572632 ATGATGCCAAGCTAGTGATGT 57.427 42.857 0.00 0.00 0.00 3.06
1243 1320 4.394300 GGTGTATGATCTATGATGCCAAGC 59.606 45.833 0.00 0.00 0.00 4.01
1292 1369 2.972505 AAACGCGCCACCTGTGAG 60.973 61.111 5.73 0.00 0.00 3.51
1354 1431 1.003718 CAAGTGGTCGAGGGGGAAC 60.004 63.158 0.00 0.00 0.00 3.62
1394 1471 3.184379 TGAGAAAAACAAGAGTGATCGCG 59.816 43.478 0.00 0.00 0.00 5.87
1467 1544 6.706295 CAAGATAGTCCTTCTTCTCCTGTTT 58.294 40.000 0.00 0.00 31.11 2.83
1468 1545 5.337975 GCAAGATAGTCCTTCTTCTCCTGTT 60.338 44.000 0.00 0.00 31.11 3.16
1469 1546 4.161377 GCAAGATAGTCCTTCTTCTCCTGT 59.839 45.833 0.00 0.00 31.11 4.00
1470 1547 4.442753 GGCAAGATAGTCCTTCTTCTCCTG 60.443 50.000 0.00 0.00 31.11 3.86
1471 1548 3.709141 GGCAAGATAGTCCTTCTTCTCCT 59.291 47.826 0.00 0.00 31.11 3.69
1505 1582 3.393089 TTTTCAGACTGAGCTCCTGTC 57.607 47.619 21.98 21.98 42.11 3.51
1529 1606 4.683832 AGTATTTCTTCGAGAACATCCGG 58.316 43.478 0.00 0.00 33.26 5.14
1574 1651 1.406539 CACACAGGGAATAAGCATGCC 59.593 52.381 15.66 0.00 0.00 4.40
1594 1671 6.679843 ACAGTACAGTAGTTCTGAAACTAGC 58.320 40.000 3.49 0.00 46.14 3.42
1656 1739 9.248291 CTAAATCATTACACATAAATTGGTGGC 57.752 33.333 9.21 0.00 39.31 5.01
1698 1789 7.094377 TGGTGAGGTCAATATTAAGTTTGCTTC 60.094 37.037 0.00 0.44 36.22 3.86
1860 1961 5.235616 CACTCAACTACTAAAAACGGCTCAA 59.764 40.000 0.00 0.00 0.00 3.02
1864 1965 4.151867 CCTCACTCAACTACTAAAAACGGC 59.848 45.833 0.00 0.00 0.00 5.68
2036 2137 3.711863 ACATATTTGTTGCCTGGATGGT 58.288 40.909 0.00 0.00 32.80 3.55
2040 2141 6.717289 AGTAGTTACATATTTGTTGCCTGGA 58.283 36.000 0.00 0.00 37.28 3.86
2069 2173 6.737346 GCACTAAACATCTCCTAGAAGGCTAG 60.737 46.154 0.00 0.00 43.08 3.42
2118 2230 6.660949 AGCCAGAACTTCAGCTTATAACATTT 59.339 34.615 1.46 0.00 29.27 2.32
2141 2260 0.247460 GAACCCTTCCCAATGCAAGC 59.753 55.000 0.00 0.00 0.00 4.01
2234 2357 3.472283 ACTAGATGGAGCAGCATCAAG 57.528 47.619 0.00 0.00 0.00 3.02
2382 2505 7.878127 TCTTCTCTTTTAAATCACTCGTTGGAT 59.122 33.333 0.00 0.00 0.00 3.41
2397 2520 8.784043 GGTTGAACAGCTATTTCTTCTCTTTTA 58.216 33.333 0.00 0.00 0.00 1.52
2458 2581 6.766467 ACTTCCTAAAACTTGTGTTGGAGTAG 59.234 38.462 0.00 0.00 36.39 2.57
2541 2668 9.076596 GCTTAATCTCAATCCAACAAATTACAC 57.923 33.333 0.00 0.00 0.00 2.90
2622 2750 6.757897 TGATTATTAGGGTTCAGCAACAAG 57.242 37.500 0.00 0.00 33.70 3.16
2650 2778 2.433838 CTCTGGTCACTGCCGCAG 60.434 66.667 19.08 19.08 37.52 5.18
2656 2784 1.224069 CGTTGGTGCTCTGGTCACTG 61.224 60.000 0.00 0.00 34.97 3.66
2657 2785 1.069765 CGTTGGTGCTCTGGTCACT 59.930 57.895 0.00 0.00 34.97 3.41
2675 2803 2.927553 TTAGTAACGCTCTCGAACCC 57.072 50.000 0.00 0.00 39.41 4.11
2813 2959 4.963276 GCAGTTAGCACATACAATTCCA 57.037 40.909 0.00 0.00 44.79 3.53
2867 3056 2.480555 CAATGCAACGAGACCGGC 59.519 61.111 0.00 0.00 40.78 6.13
2876 3065 2.431260 CGTGGCCAGCAATGCAAC 60.431 61.111 5.11 0.00 0.00 4.17
2877 3066 3.682885 CCGTGGCCAGCAATGCAA 61.683 61.111 5.11 0.00 0.00 4.08
2889 3078 1.656818 ATTTTCAGCATCGGCCGTGG 61.657 55.000 27.15 19.27 42.56 4.94
2890 3079 1.013596 TATTTTCAGCATCGGCCGTG 58.986 50.000 27.15 22.51 42.56 4.94
2891 3080 1.603802 CATATTTTCAGCATCGGCCGT 59.396 47.619 27.15 10.00 42.56 5.68
2892 3081 1.603802 ACATATTTTCAGCATCGGCCG 59.396 47.619 22.12 22.12 42.56 6.13
2893 3082 3.715628 AACATATTTTCAGCATCGGCC 57.284 42.857 0.00 0.00 42.56 6.13
2894 3083 3.725740 CGAAACATATTTTCAGCATCGGC 59.274 43.478 9.52 0.00 41.61 5.54
2895 3084 5.155509 TCGAAACATATTTTCAGCATCGG 57.844 39.130 9.52 0.00 0.00 4.18
2896 3085 6.653183 AGATCGAAACATATTTTCAGCATCG 58.347 36.000 0.00 0.00 0.00 3.84
2897 3086 7.074502 GGAGATCGAAACATATTTTCAGCATC 58.925 38.462 0.00 7.68 0.00 3.91
2898 3087 6.016777 GGGAGATCGAAACATATTTTCAGCAT 60.017 38.462 0.00 1.68 0.00 3.79
2899 3088 5.296780 GGGAGATCGAAACATATTTTCAGCA 59.703 40.000 0.00 0.00 0.00 4.41
2900 3089 5.278022 GGGGAGATCGAAACATATTTTCAGC 60.278 44.000 0.00 0.00 0.00 4.26
2901 3090 5.822519 TGGGGAGATCGAAACATATTTTCAG 59.177 40.000 0.00 4.77 0.00 3.02
2902 3091 5.588648 GTGGGGAGATCGAAACATATTTTCA 59.411 40.000 0.00 0.00 0.00 2.69
2903 3092 5.823045 AGTGGGGAGATCGAAACATATTTTC 59.177 40.000 0.00 0.00 0.00 2.29
2904 3093 5.755849 AGTGGGGAGATCGAAACATATTTT 58.244 37.500 0.00 0.00 0.00 1.82
2905 3094 5.373812 AGTGGGGAGATCGAAACATATTT 57.626 39.130 0.00 0.00 0.00 1.40
2906 3095 5.373812 AAGTGGGGAGATCGAAACATATT 57.626 39.130 0.00 0.00 0.00 1.28
2907 3096 5.373812 AAAGTGGGGAGATCGAAACATAT 57.626 39.130 0.00 0.00 0.00 1.78
2908 3097 4.837093 AAAGTGGGGAGATCGAAACATA 57.163 40.909 0.00 0.00 0.00 2.29
2909 3098 3.721087 AAAGTGGGGAGATCGAAACAT 57.279 42.857 0.00 0.00 0.00 2.71
2910 3099 3.146066 CAAAAGTGGGGAGATCGAAACA 58.854 45.455 0.00 0.00 0.00 2.83
2911 3100 3.058224 CACAAAAGTGGGGAGATCGAAAC 60.058 47.826 0.00 0.00 0.00 2.78
2912 3101 3.146066 CACAAAAGTGGGGAGATCGAAA 58.854 45.455 0.00 0.00 0.00 3.46
2913 3102 2.778299 CACAAAAGTGGGGAGATCGAA 58.222 47.619 0.00 0.00 0.00 3.71
2914 3103 2.472695 CACAAAAGTGGGGAGATCGA 57.527 50.000 0.00 0.00 0.00 3.59
2924 3113 8.672815 ACAAATTTTCCATTAACCACAAAAGTG 58.327 29.630 0.00 0.00 0.00 3.16
2925 3114 8.800370 ACAAATTTTCCATTAACCACAAAAGT 57.200 26.923 0.00 0.00 0.00 2.66
2926 3115 9.715123 GAACAAATTTTCCATTAACCACAAAAG 57.285 29.630 0.00 0.00 0.00 2.27
2927 3116 9.231297 TGAACAAATTTTCCATTAACCACAAAA 57.769 25.926 0.00 0.00 0.00 2.44
2928 3117 8.792830 TGAACAAATTTTCCATTAACCACAAA 57.207 26.923 0.00 0.00 0.00 2.83
2929 3118 8.834465 CATGAACAAATTTTCCATTAACCACAA 58.166 29.630 0.00 0.00 0.00 3.33
2930 3119 7.989741 ACATGAACAAATTTTCCATTAACCACA 59.010 29.630 0.00 0.00 0.00 4.17
2931 3120 8.376889 ACATGAACAAATTTTCCATTAACCAC 57.623 30.769 0.00 0.00 0.00 4.16
2932 3121 7.383572 CGACATGAACAAATTTTCCATTAACCA 59.616 33.333 0.00 0.00 0.00 3.67
2933 3122 7.148656 CCGACATGAACAAATTTTCCATTAACC 60.149 37.037 0.00 0.00 0.00 2.85
2934 3123 7.621219 GCCGACATGAACAAATTTTCCATTAAC 60.621 37.037 0.00 0.00 0.00 2.01
2935 3124 6.367422 GCCGACATGAACAAATTTTCCATTAA 59.633 34.615 0.00 0.00 0.00 1.40
2936 3125 5.866633 GCCGACATGAACAAATTTTCCATTA 59.133 36.000 0.00 0.00 0.00 1.90
2937 3126 4.690280 GCCGACATGAACAAATTTTCCATT 59.310 37.500 0.00 0.00 0.00 3.16
2938 3127 4.021192 AGCCGACATGAACAAATTTTCCAT 60.021 37.500 0.00 0.00 0.00 3.41
2939 3128 3.320541 AGCCGACATGAACAAATTTTCCA 59.679 39.130 0.00 0.00 0.00 3.53
2940 3129 3.913089 AGCCGACATGAACAAATTTTCC 58.087 40.909 0.00 0.00 0.00 3.13
2941 3130 5.905480 AAAGCCGACATGAACAAATTTTC 57.095 34.783 0.00 0.00 0.00 2.29
2942 3131 5.503846 GCAAAAGCCGACATGAACAAATTTT 60.504 36.000 0.00 0.00 0.00 1.82
2943 3132 4.024977 GCAAAAGCCGACATGAACAAATTT 60.025 37.500 0.00 0.00 0.00 1.82
2944 3133 3.494251 GCAAAAGCCGACATGAACAAATT 59.506 39.130 0.00 0.00 0.00 1.82
2945 3134 3.059166 GCAAAAGCCGACATGAACAAAT 58.941 40.909 0.00 0.00 0.00 2.32
2946 3135 2.468831 GCAAAAGCCGACATGAACAAA 58.531 42.857 0.00 0.00 0.00 2.83
2947 3136 1.269517 GGCAAAAGCCGACATGAACAA 60.270 47.619 0.00 0.00 0.00 2.83
2948 3137 0.313672 GGCAAAAGCCGACATGAACA 59.686 50.000 0.00 0.00 0.00 3.18
2949 3138 0.388520 GGGCAAAAGCCGACATGAAC 60.389 55.000 0.00 0.00 0.00 3.18
2950 3139 1.531739 GGGGCAAAAGCCGACATGAA 61.532 55.000 0.00 0.00 0.00 2.57
2951 3140 1.976474 GGGGCAAAAGCCGACATGA 60.976 57.895 0.00 0.00 0.00 3.07
2952 3141 2.573340 GGGGCAAAAGCCGACATG 59.427 61.111 0.00 0.00 0.00 3.21
2953 3142 2.679996 GGGGGCAAAAGCCGACAT 60.680 61.111 0.00 0.00 0.00 3.06
2967 3156 0.902531 TTCTGAAAGCGTCTAGGGGG 59.097 55.000 0.00 0.00 0.00 5.40
2968 3157 2.742589 GTTTTCTGAAAGCGTCTAGGGG 59.257 50.000 2.75 0.00 0.00 4.79
2969 3158 3.399330 TGTTTTCTGAAAGCGTCTAGGG 58.601 45.455 11.50 0.00 0.00 3.53
2970 3159 4.452455 ACATGTTTTCTGAAAGCGTCTAGG 59.548 41.667 8.49 1.85 0.00 3.02
2971 3160 5.597813 ACATGTTTTCTGAAAGCGTCTAG 57.402 39.130 8.49 2.15 0.00 2.43
2972 3161 5.295787 ACAACATGTTTTCTGAAAGCGTCTA 59.704 36.000 8.77 0.00 0.00 2.59
2973 3162 4.096382 ACAACATGTTTTCTGAAAGCGTCT 59.904 37.500 8.77 0.00 0.00 4.18
2974 3163 4.351192 ACAACATGTTTTCTGAAAGCGTC 58.649 39.130 8.77 0.79 0.00 5.19
2975 3164 4.351192 GACAACATGTTTTCTGAAAGCGT 58.649 39.130 15.88 8.84 0.00 5.07
2976 3165 3.730715 GGACAACATGTTTTCTGAAAGCG 59.269 43.478 20.90 4.53 0.00 4.68
2977 3166 4.051237 GGGACAACATGTTTTCTGAAAGC 58.949 43.478 20.90 9.68 0.00 3.51
2978 3167 4.202010 ACGGGACAACATGTTTTCTGAAAG 60.202 41.667 20.90 11.91 0.00 2.62
2979 3168 3.697045 ACGGGACAACATGTTTTCTGAAA 59.303 39.130 20.90 0.00 0.00 2.69
2980 3169 3.066064 CACGGGACAACATGTTTTCTGAA 59.934 43.478 20.90 0.00 0.00 3.02
2981 3170 2.616376 CACGGGACAACATGTTTTCTGA 59.384 45.455 20.90 0.00 0.00 3.27
2982 3171 2.616376 TCACGGGACAACATGTTTTCTG 59.384 45.455 20.90 16.44 0.00 3.02
2983 3172 2.925724 TCACGGGACAACATGTTTTCT 58.074 42.857 20.90 2.50 0.00 2.52
2984 3173 3.915437 ATCACGGGACAACATGTTTTC 57.085 42.857 15.03 15.03 0.00 2.29
2985 3174 4.664150 AAATCACGGGACAACATGTTTT 57.336 36.364 8.77 1.70 0.00 2.43
2986 3175 4.340950 AGAAAATCACGGGACAACATGTTT 59.659 37.500 8.77 0.41 0.00 2.83
2987 3176 3.888930 AGAAAATCACGGGACAACATGTT 59.111 39.130 4.92 4.92 0.00 2.71
2988 3177 3.486383 AGAAAATCACGGGACAACATGT 58.514 40.909 0.00 0.00 0.00 3.21
2989 3178 5.572211 CATAGAAAATCACGGGACAACATG 58.428 41.667 0.00 0.00 0.00 3.21
2990 3179 4.096382 GCATAGAAAATCACGGGACAACAT 59.904 41.667 0.00 0.00 0.00 2.71
2991 3180 3.438781 GCATAGAAAATCACGGGACAACA 59.561 43.478 0.00 0.00 0.00 3.33
2992 3181 3.181500 GGCATAGAAAATCACGGGACAAC 60.181 47.826 0.00 0.00 0.00 3.32
2993 3182 3.013921 GGCATAGAAAATCACGGGACAA 58.986 45.455 0.00 0.00 0.00 3.18
2994 3183 2.026729 TGGCATAGAAAATCACGGGACA 60.027 45.455 0.00 0.00 0.00 4.02
2995 3184 2.639065 TGGCATAGAAAATCACGGGAC 58.361 47.619 0.00 0.00 0.00 4.46
2996 3185 3.054728 TCTTGGCATAGAAAATCACGGGA 60.055 43.478 0.00 0.00 0.00 5.14
2997 3186 3.278574 TCTTGGCATAGAAAATCACGGG 58.721 45.455 0.00 0.00 0.00 5.28
2998 3187 4.963276 TTCTTGGCATAGAAAATCACGG 57.037 40.909 8.88 0.00 31.45 4.94
3031 3220 3.297134 TGCCCTAGAAAATCATGGGAC 57.703 47.619 10.54 4.53 40.23 4.46
3032 3221 4.329638 TTTGCCCTAGAAAATCATGGGA 57.670 40.909 10.54 0.00 40.23 4.37
3033 3222 5.419239 TTTTTGCCCTAGAAAATCATGGG 57.581 39.130 0.00 0.00 40.74 4.00
3052 3241 4.129380 GTCAGGCCAAGCTTTTGATTTTT 58.871 39.130 5.01 0.00 0.00 1.94
3053 3242 3.134442 TGTCAGGCCAAGCTTTTGATTTT 59.866 39.130 5.01 0.00 0.00 1.82
3054 3243 2.699846 TGTCAGGCCAAGCTTTTGATTT 59.300 40.909 5.01 0.00 0.00 2.17
3055 3244 2.318908 TGTCAGGCCAAGCTTTTGATT 58.681 42.857 5.01 0.00 0.00 2.57
3056 3245 1.999648 TGTCAGGCCAAGCTTTTGAT 58.000 45.000 5.01 0.00 0.00 2.57
3057 3246 1.774110 TTGTCAGGCCAAGCTTTTGA 58.226 45.000 5.01 0.00 0.00 2.69
3058 3247 2.476821 CTTTGTCAGGCCAAGCTTTTG 58.523 47.619 5.01 0.00 0.00 2.44
3059 3248 1.202568 GCTTTGTCAGGCCAAGCTTTT 60.203 47.619 15.60 0.00 0.00 2.27
3060 3249 0.390492 GCTTTGTCAGGCCAAGCTTT 59.610 50.000 15.60 0.00 0.00 3.51
3069 3258 1.202290 ACAAACGCTTGCTTTGTCAGG 60.202 47.619 13.32 0.00 37.27 3.86
3087 3276 6.017770 CAGTTTGACGGTATTAACAAGGAACA 60.018 38.462 0.00 0.00 0.00 3.18
3088 3277 6.017687 ACAGTTTGACGGTATTAACAAGGAAC 60.018 38.462 0.00 0.00 0.00 3.62
3100 3289 6.594788 AACCTTCTATACAGTTTGACGGTA 57.405 37.500 0.00 0.00 33.58 4.02
3102 3291 6.164176 AGAAACCTTCTATACAGTTTGACGG 58.836 40.000 0.00 0.00 38.49 4.79
3115 3304 9.658799 CAAGAACTGATATGAAGAAACCTTCTA 57.341 33.333 6.71 0.00 39.61 2.10
3128 3317 5.183713 TGCCTTTCCAACAAGAACTGATATG 59.816 40.000 0.00 0.00 0.00 1.78
3143 3332 1.597854 CGACTGCTGTGCCTTTCCA 60.598 57.895 0.00 0.00 0.00 3.53
3144 3333 2.970974 GCGACTGCTGTGCCTTTCC 61.971 63.158 0.00 0.00 38.39 3.13
3156 3345 0.249073 CCCGAATCCTGTAGCGACTG 60.249 60.000 0.00 0.00 0.00 3.51
3208 3397 4.201657 CCACATGCATAGAAGACAATCCA 58.798 43.478 0.00 0.00 0.00 3.41
3209 3398 4.202441 ACCACATGCATAGAAGACAATCC 58.798 43.478 0.00 0.00 0.00 3.01
3210 3399 5.237344 GGTACCACATGCATAGAAGACAATC 59.763 44.000 7.15 0.00 0.00 2.67
3222 3411 3.894427 ACAAATTTCTGGTACCACATGCA 59.106 39.130 11.60 0.00 0.00 3.96
3231 3420 6.940298 AGGAAAAGATCGACAAATTTCTGGTA 59.060 34.615 11.95 0.00 32.14 3.25
3267 3456 2.973945 ACAAAAGTATCTCCGTGGAGC 58.026 47.619 11.17 0.00 41.71 4.70
3296 3485 9.352784 CGGATCATACATTGTTTGTTTTGTAAT 57.647 29.630 7.06 0.00 39.87 1.89
3304 3493 5.384063 TTTGCGGATCATACATTGTTTGT 57.616 34.783 7.06 0.00 42.62 2.83
3305 3494 6.702972 TTTTTGCGGATCATACATTGTTTG 57.297 33.333 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.