Multiple sequence alignment - TraesCS1B01G414400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G414400 chr1B 100.000 2966 0 0 1 2966 639426824 639429789 0.000000e+00 5478.0
1 TraesCS1B01G414400 chr1B 91.965 1842 86 25 740 2546 17885527 17883713 0.000000e+00 2525.0
2 TraesCS1B01G414400 chr1B 94.043 1427 63 7 2 1413 627827548 627828967 0.000000e+00 2145.0
3 TraesCS1B01G414400 chr1B 84.166 1061 101 39 1405 2435 627841195 627842218 0.000000e+00 966.0
4 TraesCS1B01G414400 chr1B 94.702 453 18 4 491 942 4907228 4906781 0.000000e+00 699.0
5 TraesCS1B01G414400 chr1B 95.161 62 1 1 2907 2966 17883715 17883654 2.430000e-16 97.1
6 TraesCS1B01G414400 chr1D 86.596 1880 151 48 608 2435 5447980 5449810 0.000000e+00 1982.0
7 TraesCS1B01G414400 chr1D 90.306 196 16 3 2639 2832 360358391 360358197 1.360000e-63 254.0
8 TraesCS1B01G414400 chr1D 85.161 155 13 5 2 154 5448161 5448307 1.840000e-32 150.0
9 TraesCS1B01G414400 chr1D 87.179 117 12 3 2 116 5446764 5446879 2.400000e-26 130.0
10 TraesCS1B01G414400 chr7A 86.043 1870 165 46 614 2435 692318306 692316485 0.000000e+00 1919.0
11 TraesCS1B01G414400 chr7A 94.771 153 8 0 2 154 692318131 692317979 3.820000e-59 239.0
12 TraesCS1B01G414400 chr5B 95.364 453 16 3 491 942 596618299 596617851 0.000000e+00 715.0
13 TraesCS1B01G414400 chr3B 95.364 453 16 3 491 942 25506035 25505587 0.000000e+00 715.0
14 TraesCS1B01G414400 chr3B 94.413 179 7 1 2639 2814 480334743 480334921 3.770000e-69 272.0
15 TraesCS1B01G414400 chr3B 91.979 187 12 3 2639 2824 4226126 4226310 2.930000e-65 259.0
16 TraesCS1B01G414400 chr7B 95.143 453 17 3 491 942 217756290 217756738 0.000000e+00 710.0
17 TraesCS1B01G414400 chr7B 94.286 175 8 2 2633 2806 464537694 464537867 1.750000e-67 267.0
18 TraesCS1B01G414400 chr7B 91.710 193 12 4 2619 2810 493508366 493508555 6.300000e-67 265.0
19 TraesCS1B01G414400 chr6B 95.143 453 17 3 491 942 370757647 370757199 0.000000e+00 710.0
20 TraesCS1B01G414400 chr6B 94.702 453 19 3 491 942 647732447 647731999 0.000000e+00 699.0
21 TraesCS1B01G414400 chr6B 95.858 169 7 0 2642 2810 29399883 29400051 1.050000e-69 274.0
22 TraesCS1B01G414400 chr4A 94.923 453 18 3 491 942 660178812 660178364 0.000000e+00 704.0
23 TraesCS1B01G414400 chr4A 92.021 188 11 4 2623 2808 38364107 38364292 8.150000e-66 261.0
24 TraesCS1B01G414400 chrUn 94.481 453 20 3 491 942 8528745 8529193 0.000000e+00 693.0
25 TraesCS1B01G414400 chr2B 94.857 175 9 0 2634 2808 41180845 41181019 1.050000e-69 274.0
26 TraesCS1B01G414400 chr5A 93.785 177 8 3 2639 2813 8174495 8174670 2.270000e-66 263.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G414400 chr1B 639426824 639429789 2965 False 5478.00 5478 100.000 1 2966 1 chr1B.!!$F3 2965
1 TraesCS1B01G414400 chr1B 627827548 627828967 1419 False 2145.00 2145 94.043 2 1413 1 chr1B.!!$F1 1411
2 TraesCS1B01G414400 chr1B 17883654 17885527 1873 True 1311.05 2525 93.563 740 2966 2 chr1B.!!$R2 2226
3 TraesCS1B01G414400 chr1B 627841195 627842218 1023 False 966.00 966 84.166 1405 2435 1 chr1B.!!$F2 1030
4 TraesCS1B01G414400 chr1D 5446764 5449810 3046 False 754.00 1982 86.312 2 2435 3 chr1D.!!$F1 2433
5 TraesCS1B01G414400 chr7A 692316485 692318306 1821 True 1079.00 1919 90.407 2 2435 2 chr7A.!!$R1 2433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 987 0.109532 TTGATCGCTCACCAAACCCA 59.890 50.0 0.00 0.0 0.0 4.51 F
831 1536 0.814010 AGGTGTTCGTCACTTGTGGC 60.814 55.0 11.61 0.0 45.5 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2540 0.748005 GATGGTCCACCGGGTTCATG 60.748 60.0 6.32 0.0 39.43 3.07 R
2577 3374 0.112995 AGCCAAAATGACCTCAGGCA 59.887 50.0 0.00 0.0 44.34 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 7.817418 TTTTCATCAGTAAAGCTAGGTGTTT 57.183 32.000 0.00 0.00 0.00 2.83
158 174 4.209452 TGCTGCTAATAAATGCTTACGC 57.791 40.909 0.00 0.00 0.00 4.42
187 203 1.490693 GATGTGTACCAGATGCGCGG 61.491 60.000 8.83 0.00 0.00 6.46
206 222 2.479837 GGGTTTGGTTTTGCTGCTTAC 58.520 47.619 0.00 0.00 0.00 2.34
223 382 3.713288 CTTACCTCACACGACAAACAGA 58.287 45.455 0.00 0.00 0.00 3.41
232 391 0.435008 CGACAAACAGAGTGTAGCGC 59.565 55.000 0.00 0.00 0.00 5.92
240 399 3.678717 GAGTGTAGCGCCGCTCGAA 62.679 63.158 18.06 0.00 40.44 3.71
242 401 1.298863 GTGTAGCGCCGCTCGAATA 60.299 57.895 18.06 0.00 40.44 1.75
272 964 0.909610 TCAGGAGAAACCCGCTGGAT 60.910 55.000 0.00 0.00 40.05 3.41
295 987 0.109532 TTGATCGCTCACCAAACCCA 59.890 50.000 0.00 0.00 0.00 4.51
343 1038 1.396996 CGAACTCCGCCTGTAAAATGG 59.603 52.381 0.00 0.00 0.00 3.16
344 1039 2.706890 GAACTCCGCCTGTAAAATGGA 58.293 47.619 0.00 0.00 0.00 3.41
357 1052 7.331934 GCCTGTAAAATGGATTTCTTTTCTTCC 59.668 37.037 0.00 0.00 32.27 3.46
481 1176 5.483583 ACTCAGATTTGGAGAGAGCTAAACT 59.516 40.000 0.00 0.00 36.26 2.66
518 1213 4.461081 TGAATTGGGCAACTGTATTGTACC 59.539 41.667 0.00 0.00 0.00 3.34
520 1215 2.785562 TGGGCAACTGTATTGTACCAC 58.214 47.619 0.00 0.00 0.00 4.16
522 1217 3.583526 TGGGCAACTGTATTGTACCACTA 59.416 43.478 0.00 0.00 0.00 2.74
523 1218 4.189231 GGGCAACTGTATTGTACCACTAG 58.811 47.826 0.00 0.00 0.00 2.57
524 1219 4.323257 GGGCAACTGTATTGTACCACTAGT 60.323 45.833 0.00 0.00 0.00 2.57
525 1220 4.630069 GGCAACTGTATTGTACCACTAGTG 59.370 45.833 16.34 16.34 0.00 2.74
526 1221 5.235516 GCAACTGTATTGTACCACTAGTGT 58.764 41.667 21.18 11.81 0.00 3.55
595 1290 4.003648 GTCTGGAACCGATCTTGTGAATT 58.996 43.478 0.00 0.00 0.00 2.17
677 1372 4.125703 CTCTCTCTTGTGAGTTTTGCTGT 58.874 43.478 0.00 0.00 40.98 4.40
708 1409 5.796350 ATGTTGCTGGATAAGAAACGTAC 57.204 39.130 0.00 0.00 46.43 3.67
728 1429 4.353383 ACTACAAGTTTGGGACTTCTCC 57.647 45.455 0.00 0.00 45.40 3.71
831 1536 0.814010 AGGTGTTCGTCACTTGTGGC 60.814 55.000 11.61 0.00 45.50 5.01
881 1590 7.387673 TCGCTATTTTCTGTTGATTCTTTCTGA 59.612 33.333 0.00 0.00 0.00 3.27
1107 1826 2.305607 CCGAGGGGGTGGATCCAAA 61.306 63.158 18.20 0.00 38.11 3.28
1109 1828 1.847798 CGAGGGGGTGGATCCAAACA 61.848 60.000 18.20 0.00 38.11 2.83
1123 1842 1.396996 CCAAACAATCGCTTAGGGACG 59.603 52.381 0.00 0.00 0.00 4.79
1209 1928 1.673400 TCTTCTCGGATCGCTCTTCTG 59.327 52.381 0.00 0.00 0.00 3.02
1290 2009 5.530915 TGTCAATTACATAATAGCCAGCCAC 59.469 40.000 0.00 0.00 31.43 5.01
1821 2540 4.295119 ACTGTCCGTGGTGTCGCC 62.295 66.667 0.00 0.00 37.90 5.54
2159 2906 0.823356 GTTTGGACTTGCCTCTGCCA 60.823 55.000 0.00 0.00 37.63 4.92
2184 2931 1.941999 GCTGCATTCCTTCCTGCCAC 61.942 60.000 0.00 0.00 37.59 5.01
2196 2943 5.652014 TCCTTCCTGCCACTAATAATTTGTG 59.348 40.000 0.00 0.00 0.00 3.33
2452 3245 6.852420 TCATACATAGAACATAGGGCCTAC 57.148 41.667 17.19 2.73 0.00 3.18
2464 3261 2.126882 AGGGCCTACATACTGCAATGA 58.873 47.619 2.82 0.00 0.00 2.57
2500 3297 4.042311 TCCTGGTGGTTTTGCTATTCAGTA 59.958 41.667 0.00 0.00 34.23 2.74
2506 3303 4.517453 TGGTTTTGCTATTCAGTACACACC 59.483 41.667 0.00 0.00 0.00 4.16
2538 3335 2.235898 TCCTGCCAAGTTTTGTTTGCTT 59.764 40.909 0.00 0.00 0.00 3.91
2543 3340 3.678529 GCCAAGTTTTGTTTGCTTCAGGA 60.679 43.478 0.00 0.00 0.00 3.86
2544 3341 4.114794 CCAAGTTTTGTTTGCTTCAGGAG 58.885 43.478 0.00 0.00 0.00 3.69
2545 3342 4.142182 CCAAGTTTTGTTTGCTTCAGGAGA 60.142 41.667 0.00 0.00 0.00 3.71
2546 3343 5.452356 CCAAGTTTTGTTTGCTTCAGGAGAT 60.452 40.000 0.00 0.00 0.00 2.75
2547 3344 5.192327 AGTTTTGTTTGCTTCAGGAGATG 57.808 39.130 0.00 0.00 0.00 2.90
2548 3345 4.889409 AGTTTTGTTTGCTTCAGGAGATGA 59.111 37.500 0.00 0.00 35.62 2.92
2549 3346 5.537674 AGTTTTGTTTGCTTCAGGAGATGAT 59.462 36.000 0.00 0.00 37.89 2.45
2550 3347 5.381174 TTTGTTTGCTTCAGGAGATGATG 57.619 39.130 0.00 0.00 37.89 3.07
2551 3348 4.290711 TGTTTGCTTCAGGAGATGATGA 57.709 40.909 0.00 0.00 37.89 2.92
2552 3349 4.851843 TGTTTGCTTCAGGAGATGATGAT 58.148 39.130 0.00 0.00 37.89 2.45
2553 3350 5.258841 TGTTTGCTTCAGGAGATGATGATT 58.741 37.500 0.00 0.00 37.89 2.57
2554 3351 5.356190 TGTTTGCTTCAGGAGATGATGATTC 59.644 40.000 0.00 0.00 37.89 2.52
2555 3352 4.765813 TGCTTCAGGAGATGATGATTCA 57.234 40.909 0.00 0.00 37.89 2.57
2556 3353 5.306114 TGCTTCAGGAGATGATGATTCAT 57.694 39.130 0.00 0.00 45.39 2.57
2557 3354 5.691896 TGCTTCAGGAGATGATGATTCATT 58.308 37.500 0.00 0.00 42.73 2.57
2558 3355 5.763698 TGCTTCAGGAGATGATGATTCATTC 59.236 40.000 0.00 0.00 42.73 2.67
2559 3356 5.181622 GCTTCAGGAGATGATGATTCATTCC 59.818 44.000 0.00 3.98 42.73 3.01
2560 3357 5.899631 TCAGGAGATGATGATTCATTCCA 57.100 39.130 14.59 4.66 42.73 3.53
2561 3358 5.866207 TCAGGAGATGATGATTCATTCCAG 58.134 41.667 14.59 8.71 42.73 3.86
2562 3359 5.368816 TCAGGAGATGATGATTCATTCCAGT 59.631 40.000 14.59 0.00 42.73 4.00
2563 3360 5.701750 CAGGAGATGATGATTCATTCCAGTC 59.298 44.000 14.59 5.45 42.73 3.51
2564 3361 5.607592 AGGAGATGATGATTCATTCCAGTCT 59.392 40.000 14.59 8.18 42.73 3.24
2565 3362 6.101442 AGGAGATGATGATTCATTCCAGTCTT 59.899 38.462 14.59 0.97 42.73 3.01
2566 3363 6.771749 GGAGATGATGATTCATTCCAGTCTTT 59.228 38.462 9.34 0.00 42.73 2.52
2567 3364 7.284944 GGAGATGATGATTCATTCCAGTCTTTT 59.715 37.037 9.34 0.00 42.73 2.27
2568 3365 8.591114 AGATGATGATTCATTCCAGTCTTTTT 57.409 30.769 0.00 0.00 42.73 1.94
2587 3384 3.660621 GCACAGTTGCCTGAGGTC 58.339 61.111 0.00 0.00 43.66 3.85
2588 3385 1.227943 GCACAGTTGCCTGAGGTCA 60.228 57.895 0.00 0.00 43.66 4.02
2589 3386 0.607489 GCACAGTTGCCTGAGGTCAT 60.607 55.000 0.00 0.00 43.66 3.06
2590 3387 1.901591 CACAGTTGCCTGAGGTCATT 58.098 50.000 0.00 0.00 41.50 2.57
2591 3388 2.233271 CACAGTTGCCTGAGGTCATTT 58.767 47.619 0.00 0.00 41.50 2.32
2592 3389 2.624838 CACAGTTGCCTGAGGTCATTTT 59.375 45.455 0.00 0.00 41.50 1.82
2593 3390 2.624838 ACAGTTGCCTGAGGTCATTTTG 59.375 45.455 0.00 1.27 41.50 2.44
2594 3391 2.029649 CAGTTGCCTGAGGTCATTTTGG 60.030 50.000 0.00 0.00 41.50 3.28
2595 3392 0.968405 TTGCCTGAGGTCATTTTGGC 59.032 50.000 0.00 0.00 40.62 4.52
2596 3393 0.112995 TGCCTGAGGTCATTTTGGCT 59.887 50.000 0.00 0.00 40.82 4.75
2597 3394 1.260544 GCCTGAGGTCATTTTGGCTT 58.739 50.000 0.00 0.00 37.58 4.35
2598 3395 1.620323 GCCTGAGGTCATTTTGGCTTT 59.380 47.619 0.00 0.00 37.58 3.51
2599 3396 2.611224 GCCTGAGGTCATTTTGGCTTTG 60.611 50.000 0.00 0.00 37.58 2.77
2600 3397 2.629617 CCTGAGGTCATTTTGGCTTTGT 59.370 45.455 0.00 0.00 0.00 2.83
2601 3398 3.070015 CCTGAGGTCATTTTGGCTTTGTT 59.930 43.478 0.00 0.00 0.00 2.83
2602 3399 4.443315 CCTGAGGTCATTTTGGCTTTGTTT 60.443 41.667 0.00 0.00 0.00 2.83
2603 3400 4.440880 TGAGGTCATTTTGGCTTTGTTTG 58.559 39.130 0.00 0.00 0.00 2.93
2604 3401 4.081198 TGAGGTCATTTTGGCTTTGTTTGT 60.081 37.500 0.00 0.00 0.00 2.83
2605 3402 4.842574 AGGTCATTTTGGCTTTGTTTGTT 58.157 34.783 0.00 0.00 0.00 2.83
2606 3403 5.983540 AGGTCATTTTGGCTTTGTTTGTTA 58.016 33.333 0.00 0.00 0.00 2.41
2607 3404 5.815222 AGGTCATTTTGGCTTTGTTTGTTAC 59.185 36.000 0.00 0.00 0.00 2.50
2608 3405 5.276631 GGTCATTTTGGCTTTGTTTGTTACG 60.277 40.000 0.00 0.00 0.00 3.18
2609 3406 4.268884 TCATTTTGGCTTTGTTTGTTACGC 59.731 37.500 0.00 0.00 0.00 4.42
2610 3407 1.828832 TTGGCTTTGTTTGTTACGCG 58.171 45.000 3.53 3.53 0.00 6.01
2611 3408 0.733729 TGGCTTTGTTTGTTACGCGT 59.266 45.000 19.17 19.17 0.00 6.01
2612 3409 1.938577 TGGCTTTGTTTGTTACGCGTA 59.061 42.857 16.41 16.41 0.00 4.42
2613 3410 2.286301 TGGCTTTGTTTGTTACGCGTAC 60.286 45.455 20.44 14.48 0.00 3.67
2627 3424 3.003339 CGCGTACGTACATCTTTGTTG 57.997 47.619 24.50 6.79 37.28 3.33
2628 3425 2.754478 GCGTACGTACATCTTTGTTGC 58.246 47.619 24.50 12.66 37.28 4.17
2629 3426 2.473376 GCGTACGTACATCTTTGTTGCC 60.473 50.000 24.50 0.00 37.28 4.52
2630 3427 2.991190 CGTACGTACATCTTTGTTGCCT 59.009 45.455 24.50 0.00 37.28 4.75
2631 3428 3.181534 CGTACGTACATCTTTGTTGCCTG 60.182 47.826 24.50 0.18 37.28 4.85
2632 3429 2.846193 ACGTACATCTTTGTTGCCTGT 58.154 42.857 0.00 0.00 37.28 4.00
2633 3430 3.211045 ACGTACATCTTTGTTGCCTGTT 58.789 40.909 0.00 0.00 37.28 3.16
2634 3431 3.630312 ACGTACATCTTTGTTGCCTGTTT 59.370 39.130 0.00 0.00 37.28 2.83
2635 3432 4.097286 ACGTACATCTTTGTTGCCTGTTTT 59.903 37.500 0.00 0.00 37.28 2.43
2636 3433 5.297278 ACGTACATCTTTGTTGCCTGTTTTA 59.703 36.000 0.00 0.00 37.28 1.52
2637 3434 5.851177 CGTACATCTTTGTTGCCTGTTTTAG 59.149 40.000 0.00 0.00 37.28 1.85
2638 3435 6.293190 CGTACATCTTTGTTGCCTGTTTTAGA 60.293 38.462 0.00 0.00 37.28 2.10
2639 3436 6.655078 ACATCTTTGTTGCCTGTTTTAGAT 57.345 33.333 0.00 0.00 29.55 1.98
2640 3437 7.759489 ACATCTTTGTTGCCTGTTTTAGATA 57.241 32.000 0.00 0.00 29.55 1.98
2641 3438 8.353423 ACATCTTTGTTGCCTGTTTTAGATAT 57.647 30.769 0.00 0.00 29.55 1.63
2642 3439 9.461312 ACATCTTTGTTGCCTGTTTTAGATATA 57.539 29.630 0.00 0.00 29.55 0.86
2643 3440 9.722056 CATCTTTGTTGCCTGTTTTAGATATAC 57.278 33.333 0.00 0.00 0.00 1.47
2644 3441 9.686683 ATCTTTGTTGCCTGTTTTAGATATACT 57.313 29.630 0.00 0.00 0.00 2.12
2645 3442 9.162764 TCTTTGTTGCCTGTTTTAGATATACTC 57.837 33.333 0.00 0.00 0.00 2.59
2646 3443 7.859325 TTGTTGCCTGTTTTAGATATACTCC 57.141 36.000 0.00 0.00 0.00 3.85
2647 3444 6.354130 TGTTGCCTGTTTTAGATATACTCCC 58.646 40.000 0.00 0.00 0.00 4.30
2648 3445 6.157994 TGTTGCCTGTTTTAGATATACTCCCT 59.842 38.462 0.00 0.00 0.00 4.20
2649 3446 6.420913 TGCCTGTTTTAGATATACTCCCTC 57.579 41.667 0.00 0.00 0.00 4.30
2650 3447 5.307196 TGCCTGTTTTAGATATACTCCCTCC 59.693 44.000 0.00 0.00 0.00 4.30
2651 3448 5.567025 GCCTGTTTTAGATATACTCCCTCCG 60.567 48.000 0.00 0.00 0.00 4.63
2652 3449 5.539193 CCTGTTTTAGATATACTCCCTCCGT 59.461 44.000 0.00 0.00 0.00 4.69
2653 3450 6.041751 CCTGTTTTAGATATACTCCCTCCGTT 59.958 42.308 0.00 0.00 0.00 4.44
2654 3451 7.047460 TGTTTTAGATATACTCCCTCCGTTC 57.953 40.000 0.00 0.00 0.00 3.95
2655 3452 6.041296 TGTTTTAGATATACTCCCTCCGTTCC 59.959 42.308 0.00 0.00 0.00 3.62
2656 3453 5.595814 TTAGATATACTCCCTCCGTTCCT 57.404 43.478 0.00 0.00 0.00 3.36
2657 3454 6.708885 TTAGATATACTCCCTCCGTTCCTA 57.291 41.667 0.00 0.00 0.00 2.94
2658 3455 5.595814 AGATATACTCCCTCCGTTCCTAA 57.404 43.478 0.00 0.00 0.00 2.69
2659 3456 5.961897 AGATATACTCCCTCCGTTCCTAAA 58.038 41.667 0.00 0.00 0.00 1.85
2660 3457 6.563163 AGATATACTCCCTCCGTTCCTAAAT 58.437 40.000 0.00 0.00 0.00 1.40
2661 3458 7.706674 AGATATACTCCCTCCGTTCCTAAATA 58.293 38.462 0.00 0.00 0.00 1.40
2662 3459 8.345306 AGATATACTCCCTCCGTTCCTAAATAT 58.655 37.037 0.00 0.00 0.00 1.28
2663 3460 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
2664 3461 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2665 3462 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2666 3463 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2667 3464 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2668 3465 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2669 3466 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2670 3467 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2671 3468 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2672 3469 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2673 3470 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2674 3471 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2675 3472 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2688 3485 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2689 3486 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2690 3487 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2691 3488 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2692 3489 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2693 3490 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2694 3491 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2695 3492 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2696 3493 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2698 3495 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2699 3496 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2700 3497 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2701 3498 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2702 3499 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2703 3500 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2704 3501 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2705 3502 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2706 3503 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2707 3504 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2708 3505 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2709 3506 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
2710 3507 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
2711 3508 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
2712 3509 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
2713 3510 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2714 3511 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2715 3512 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2716 3513 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2717 3514 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
2718 3515 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
2719 3516 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
2720 3517 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2721 3518 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2722 3519 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2756 3553 8.837788 ATGTCTACATACATCCATATGTTGTG 57.162 34.615 15.29 7.83 44.07 3.33
2757 3554 7.791029 TGTCTACATACATCCATATGTTGTGT 58.209 34.615 15.29 12.16 44.07 3.72
2758 3555 7.926018 TGTCTACATACATCCATATGTTGTGTC 59.074 37.037 15.29 2.16 44.07 3.67
2759 3556 7.385205 GTCTACATACATCCATATGTTGTGTCC 59.615 40.741 15.29 0.45 44.07 4.02
2760 3557 6.000246 ACATACATCCATATGTTGTGTCCA 58.000 37.500 15.29 0.67 44.07 4.02
2761 3558 6.604171 ACATACATCCATATGTTGTGTCCAT 58.396 36.000 15.29 2.55 44.07 3.41
2762 3559 7.062322 ACATACATCCATATGTTGTGTCCATT 58.938 34.615 15.29 0.00 44.07 3.16
2763 3560 7.560991 ACATACATCCATATGTTGTGTCCATTT 59.439 33.333 15.29 0.00 44.07 2.32
2764 3561 9.065798 CATACATCCATATGTTGTGTCCATTTA 57.934 33.333 15.29 0.00 44.07 1.40
2765 3562 7.953005 ACATCCATATGTTGTGTCCATTTAA 57.047 32.000 1.24 0.00 44.07 1.52
2766 3563 8.359875 ACATCCATATGTTGTGTCCATTTAAA 57.640 30.769 1.24 0.00 44.07 1.52
2767 3564 8.811017 ACATCCATATGTTGTGTCCATTTAAAA 58.189 29.630 1.24 0.00 44.07 1.52
2768 3565 9.820725 CATCCATATGTTGTGTCCATTTAAAAT 57.179 29.630 1.24 0.00 0.00 1.82
2769 3566 9.820725 ATCCATATGTTGTGTCCATTTAAAATG 57.179 29.630 1.24 0.00 0.00 2.32
2770 3567 8.811017 TCCATATGTTGTGTCCATTTAAAATGT 58.189 29.630 1.24 0.00 0.00 2.71
2771 3568 9.086336 CCATATGTTGTGTCCATTTAAAATGTC 57.914 33.333 1.24 0.00 0.00 3.06
2772 3569 9.859427 CATATGTTGTGTCCATTTAAAATGTCT 57.141 29.630 0.00 0.00 0.00 3.41
2775 3572 8.684386 TGTTGTGTCCATTTAAAATGTCTAGA 57.316 30.769 0.00 0.00 0.00 2.43
2776 3573 9.126151 TGTTGTGTCCATTTAAAATGTCTAGAA 57.874 29.630 0.00 0.00 0.00 2.10
2777 3574 9.959749 GTTGTGTCCATTTAAAATGTCTAGAAA 57.040 29.630 0.00 0.00 0.00 2.52
2779 3576 9.567776 TGTGTCCATTTAAAATGTCTAGAAAGA 57.432 29.630 0.00 0.00 0.00 2.52
2796 3593 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2797 3594 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2798 3595 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2799 3596 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2800 3597 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2801 3598 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2802 3599 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2803 3600 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2804 3601 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2805 3602 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
2806 3603 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
2807 3604 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
2808 3605 5.393068 TTTAGGAACGGAGGGAGTAGATA 57.607 43.478 0.00 0.00 0.00 1.98
2809 3606 3.512219 AGGAACGGAGGGAGTAGATAG 57.488 52.381 0.00 0.00 0.00 2.08
2810 3607 2.784682 AGGAACGGAGGGAGTAGATAGT 59.215 50.000 0.00 0.00 0.00 2.12
2811 3608 3.979347 AGGAACGGAGGGAGTAGATAGTA 59.021 47.826 0.00 0.00 0.00 1.82
2812 3609 4.414846 AGGAACGGAGGGAGTAGATAGTAA 59.585 45.833 0.00 0.00 0.00 2.24
2813 3610 4.518590 GGAACGGAGGGAGTAGATAGTAAC 59.481 50.000 0.00 0.00 0.00 2.50
2814 3611 5.375773 GAACGGAGGGAGTAGATAGTAACT 58.624 45.833 0.00 0.00 0.00 2.24
2815 3612 5.385628 ACGGAGGGAGTAGATAGTAACTT 57.614 43.478 0.00 0.00 0.00 2.66
2816 3613 6.506538 ACGGAGGGAGTAGATAGTAACTTA 57.493 41.667 0.00 0.00 0.00 2.24
2817 3614 6.295249 ACGGAGGGAGTAGATAGTAACTTAC 58.705 44.000 0.00 0.00 0.00 2.34
2818 3615 5.407995 CGGAGGGAGTAGATAGTAACTTACG 59.592 48.000 0.00 0.00 0.00 3.18
2819 3616 6.529220 GGAGGGAGTAGATAGTAACTTACGA 58.471 44.000 0.00 0.00 0.00 3.43
2820 3617 6.995091 GGAGGGAGTAGATAGTAACTTACGAA 59.005 42.308 0.00 0.00 0.00 3.85
2821 3618 7.500559 GGAGGGAGTAGATAGTAACTTACGAAA 59.499 40.741 0.00 0.00 0.00 3.46
2822 3619 8.993404 AGGGAGTAGATAGTAACTTACGAAAT 57.007 34.615 0.00 0.00 0.00 2.17
2823 3620 9.065798 AGGGAGTAGATAGTAACTTACGAAATC 57.934 37.037 0.00 0.24 0.00 2.17
2824 3621 8.844244 GGGAGTAGATAGTAACTTACGAAATCA 58.156 37.037 0.00 1.20 0.00 2.57
2829 3626 8.408743 AGATAGTAACTTACGAAATCAAGTGC 57.591 34.615 0.00 0.00 35.23 4.40
2830 3627 8.251721 AGATAGTAACTTACGAAATCAAGTGCT 58.748 33.333 0.00 0.00 35.23 4.40
2831 3628 6.707599 AGTAACTTACGAAATCAAGTGCTC 57.292 37.500 0.00 0.00 35.23 4.26
2832 3629 6.220930 AGTAACTTACGAAATCAAGTGCTCA 58.779 36.000 0.00 0.00 35.23 4.26
2833 3630 4.992381 ACTTACGAAATCAAGTGCTCAC 57.008 40.909 0.00 0.00 33.78 3.51
2834 3631 3.746492 ACTTACGAAATCAAGTGCTCACC 59.254 43.478 0.00 0.00 33.78 4.02
2835 3632 1.148310 ACGAAATCAAGTGCTCACCG 58.852 50.000 0.00 0.00 0.00 4.94
2836 3633 1.270094 ACGAAATCAAGTGCTCACCGA 60.270 47.619 0.00 0.00 0.00 4.69
2837 3634 1.126846 CGAAATCAAGTGCTCACCGAC 59.873 52.381 0.00 0.00 0.00 4.79
2838 3635 1.126846 GAAATCAAGTGCTCACCGACG 59.873 52.381 0.00 0.00 0.00 5.12
2839 3636 0.670546 AATCAAGTGCTCACCGACGG 60.671 55.000 13.61 13.61 0.00 4.79
2840 3637 1.532604 ATCAAGTGCTCACCGACGGA 61.533 55.000 23.38 0.00 0.00 4.69
2841 3638 2.022129 CAAGTGCTCACCGACGGAC 61.022 63.158 23.38 7.82 0.00 4.79
2842 3639 3.222354 AAGTGCTCACCGACGGACC 62.222 63.158 23.38 5.92 0.00 4.46
2843 3640 3.986006 GTGCTCACCGACGGACCA 61.986 66.667 23.38 8.58 0.00 4.02
2844 3641 3.680786 TGCTCACCGACGGACCAG 61.681 66.667 23.38 13.49 0.00 4.00
2845 3642 3.371063 GCTCACCGACGGACCAGA 61.371 66.667 23.38 11.44 0.00 3.86
2846 3643 2.711922 GCTCACCGACGGACCAGAT 61.712 63.158 23.38 0.00 0.00 2.90
2847 3644 1.139734 CTCACCGACGGACCAGATG 59.860 63.158 23.38 7.29 0.00 2.90
2848 3645 1.595993 CTCACCGACGGACCAGATGT 61.596 60.000 23.38 0.00 0.00 3.06
2849 3646 1.153823 CACCGACGGACCAGATGTC 60.154 63.158 23.38 0.00 43.67 3.06
2853 3650 2.738147 GACGGACCAGATGTCGTTG 58.262 57.895 0.00 0.00 45.46 4.10
2854 3651 0.736325 GACGGACCAGATGTCGTTGG 60.736 60.000 0.00 0.00 45.46 3.77
2855 3652 2.100631 CGGACCAGATGTCGTTGGC 61.101 63.158 0.00 0.00 45.46 4.52
2856 3653 1.745489 GGACCAGATGTCGTTGGCC 60.745 63.158 0.00 0.00 45.46 5.36
2857 3654 1.296715 GACCAGATGTCGTTGGCCT 59.703 57.895 3.32 0.00 38.03 5.19
2858 3655 0.321653 GACCAGATGTCGTTGGCCTT 60.322 55.000 3.32 0.00 38.03 4.35
2859 3656 0.606401 ACCAGATGTCGTTGGCCTTG 60.606 55.000 3.32 0.00 38.03 3.61
2860 3657 1.503542 CAGATGTCGTTGGCCTTGC 59.496 57.895 3.32 0.00 0.00 4.01
2873 3670 2.288961 GCCTTGCCATGTTTCATCTG 57.711 50.000 0.00 0.00 0.00 2.90
2874 3671 1.134907 GCCTTGCCATGTTTCATCTGG 60.135 52.381 0.00 0.00 0.00 3.86
2875 3672 2.173519 CCTTGCCATGTTTCATCTGGT 58.826 47.619 0.00 0.00 32.42 4.00
2876 3673 2.564062 CCTTGCCATGTTTCATCTGGTT 59.436 45.455 0.00 0.00 32.42 3.67
2877 3674 3.007182 CCTTGCCATGTTTCATCTGGTTT 59.993 43.478 0.00 0.00 32.42 3.27
2878 3675 4.220382 CCTTGCCATGTTTCATCTGGTTTA 59.780 41.667 0.00 0.00 32.42 2.01
2879 3676 5.279406 CCTTGCCATGTTTCATCTGGTTTAA 60.279 40.000 0.00 0.00 32.42 1.52
2880 3677 5.389859 TGCCATGTTTCATCTGGTTTAAG 57.610 39.130 0.00 0.00 32.42 1.85
2881 3678 5.076182 TGCCATGTTTCATCTGGTTTAAGA 58.924 37.500 0.00 0.00 32.42 2.10
2882 3679 5.716228 TGCCATGTTTCATCTGGTTTAAGAT 59.284 36.000 0.00 0.00 37.39 2.40
2883 3680 6.211184 TGCCATGTTTCATCTGGTTTAAGATT 59.789 34.615 0.00 0.00 34.60 2.40
2884 3681 6.532657 GCCATGTTTCATCTGGTTTAAGATTG 59.467 38.462 0.00 0.00 34.60 2.67
2885 3682 7.037438 CCATGTTTCATCTGGTTTAAGATTGG 58.963 38.462 0.00 0.00 34.60 3.16
2886 3683 6.024552 TGTTTCATCTGGTTTAAGATTGGC 57.975 37.500 0.00 0.00 34.60 4.52
2887 3684 5.774690 TGTTTCATCTGGTTTAAGATTGGCT 59.225 36.000 0.00 0.00 34.60 4.75
2888 3685 5.902613 TTCATCTGGTTTAAGATTGGCTG 57.097 39.130 0.00 0.00 34.60 4.85
2889 3686 3.696051 TCATCTGGTTTAAGATTGGCTGC 59.304 43.478 0.00 0.00 34.60 5.25
2890 3687 3.439857 TCTGGTTTAAGATTGGCTGCT 57.560 42.857 0.00 0.00 0.00 4.24
2891 3688 3.084039 TCTGGTTTAAGATTGGCTGCTG 58.916 45.455 0.00 0.00 0.00 4.41
2892 3689 3.084039 CTGGTTTAAGATTGGCTGCTGA 58.916 45.455 0.00 0.00 0.00 4.26
2893 3690 3.084039 TGGTTTAAGATTGGCTGCTGAG 58.916 45.455 0.00 0.00 0.00 3.35
2894 3691 2.424956 GGTTTAAGATTGGCTGCTGAGG 59.575 50.000 0.00 0.00 0.00 3.86
2895 3692 1.755179 TTAAGATTGGCTGCTGAGGC 58.245 50.000 0.00 0.00 45.19 4.70
2902 3699 2.436292 GCTGCTGAGGCCAGTGAG 60.436 66.667 5.01 0.00 42.35 3.51
2903 3700 2.268280 CTGCTGAGGCCAGTGAGG 59.732 66.667 5.01 0.00 42.35 3.86
2904 3701 2.203832 TGCTGAGGCCAGTGAGGA 60.204 61.111 5.01 0.00 42.35 3.71
2959 3758 6.264292 GCTAGAAAGAGACCAGAGATGTATGA 59.736 42.308 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.807667 AGCTTTACTGATGAAAAAGAAACATG 57.192 30.769 0.00 0.00 33.05 3.21
33 35 3.056821 CGATCTTAAGACCACAGGTGACA 60.057 47.826 7.48 0.00 35.25 3.58
69 71 7.361542 CCATGAAGAATCAACAGAAAGTAGTGG 60.362 40.741 0.00 0.00 39.49 4.00
187 203 2.102420 AGGTAAGCAGCAAAACCAAACC 59.898 45.455 12.03 0.00 34.29 3.27
206 222 1.860950 CACTCTGTTTGTCGTGTGAGG 59.139 52.381 0.00 0.00 0.00 3.86
223 382 1.721664 TATTCGAGCGGCGCTACACT 61.722 55.000 36.55 21.47 39.88 3.55
232 391 5.627172 TGAGAAACAAAATTATTCGAGCGG 58.373 37.500 0.00 0.00 0.00 5.52
272 964 3.531538 GGTTTGGTGAGCGATCAATAGA 58.468 45.455 4.22 0.00 0.00 1.98
282 974 0.319813 GCACAATGGGTTTGGTGAGC 60.320 55.000 0.00 0.00 39.80 4.26
295 987 2.479049 GCAGCATCGATTCAAGCACAAT 60.479 45.455 8.02 0.00 0.00 2.71
327 1022 3.947834 AGAAATCCATTTTACAGGCGGAG 59.052 43.478 0.00 0.00 0.00 4.63
343 1038 9.885934 GAAGTAAGACTTGGAAGAAAAGAAATC 57.114 33.333 0.00 0.00 38.80 2.17
344 1039 9.408648 TGAAGTAAGACTTGGAAGAAAAGAAAT 57.591 29.630 0.00 0.00 38.80 2.17
357 1052 5.105877 TGGGTATCGACTGAAGTAAGACTTG 60.106 44.000 0.00 0.00 38.80 3.16
466 1161 5.885912 ACAAAACAAAGTTTAGCTCTCTCCA 59.114 36.000 0.00 0.00 0.00 3.86
481 1176 5.127845 TGCCCAATTCACTAGACAAAACAAA 59.872 36.000 0.00 0.00 0.00 2.83
520 1215 1.895798 TGGCAGGAAGAGACACACTAG 59.104 52.381 0.00 0.00 0.00 2.57
522 1217 1.131638 TTGGCAGGAAGAGACACACT 58.868 50.000 0.00 0.00 0.00 3.55
523 1218 2.079925 GATTGGCAGGAAGAGACACAC 58.920 52.381 0.00 0.00 0.00 3.82
524 1219 1.980765 AGATTGGCAGGAAGAGACACA 59.019 47.619 0.00 0.00 0.00 3.72
525 1220 2.027745 TCAGATTGGCAGGAAGAGACAC 60.028 50.000 0.00 0.00 0.00 3.67
526 1221 2.259917 TCAGATTGGCAGGAAGAGACA 58.740 47.619 0.00 0.00 0.00 3.41
567 1262 5.643777 CACAAGATCGGTTCCAGACTTTATT 59.356 40.000 0.00 0.00 0.00 1.40
569 1264 4.282449 TCACAAGATCGGTTCCAGACTTTA 59.718 41.667 0.00 0.00 0.00 1.85
595 1290 8.843262 CATTCAGATAATCAGATTGGCAGTAAA 58.157 33.333 5.85 0.00 0.00 2.01
677 1372 6.003326 TCTTATCCAGCAACATTCAGTTTGA 58.997 36.000 0.00 0.00 38.74 2.69
831 1536 9.066939 CGACATACATTTCTATCGATCTTAAGG 57.933 37.037 0.00 0.00 0.00 2.69
881 1590 6.371278 AGCCCTAAATGATGAATGAACTGAT 58.629 36.000 0.00 0.00 0.00 2.90
1107 1826 1.274167 TCAACGTCCCTAAGCGATTGT 59.726 47.619 0.00 0.00 0.00 2.71
1109 1828 1.405121 GGTCAACGTCCCTAAGCGATT 60.405 52.381 0.00 0.00 0.00 3.34
1123 1842 4.672409 CAAGTGTTCCTTTTGAGGTCAAC 58.328 43.478 0.00 0.00 35.28 3.18
1209 1928 1.728490 GCACCCCTTCAATCCATCGC 61.728 60.000 0.00 0.00 0.00 4.58
1290 2009 3.142838 CTGCCCGGCTCCATTTGG 61.143 66.667 11.61 0.00 0.00 3.28
1696 2415 2.202756 GCACCGGGAGTCGATCAC 60.203 66.667 6.32 0.00 42.43 3.06
1716 2435 1.040893 AGACGATACCGATGGTGGCA 61.041 55.000 0.00 0.00 36.19 4.92
1728 2447 0.979187 GGGTGGGGTTGGAGACGATA 60.979 60.000 0.00 0.00 0.00 2.92
1804 2523 4.295119 GGCGACACCACGGACAGT 62.295 66.667 0.00 0.00 38.86 3.55
1805 2524 4.293648 TGGCGACACCACGGACAG 62.294 66.667 0.00 0.00 46.36 3.51
1821 2540 0.748005 GATGGTCCACCGGGTTCATG 60.748 60.000 6.32 0.00 39.43 3.07
1941 2660 2.125350 CGGGACAGCTGAGCCTTC 60.125 66.667 23.35 6.73 0.00 3.46
2098 2836 5.982890 ACATAATAAAGCCAAAGTGCTGT 57.017 34.783 0.00 0.00 41.80 4.40
2136 2883 1.466167 CAGAGGCAAGTCCAAACATCG 59.534 52.381 0.00 0.00 37.29 3.84
2159 2906 2.298163 CAGGAAGGAATGCAGCAAACTT 59.702 45.455 0.00 4.10 0.00 2.66
2196 2943 7.751732 TCAATCACAAGCAACATACTCAATAC 58.248 34.615 0.00 0.00 0.00 1.89
2364 3150 6.371809 TTTACACCAACAGAAATCACACTC 57.628 37.500 0.00 0.00 0.00 3.51
2370 3156 9.520204 CATAATGGATTTACACCAACAGAAATC 57.480 33.333 0.00 0.00 40.93 2.17
2440 3233 2.689658 TGCAGTATGTAGGCCCTATGT 58.310 47.619 0.00 0.00 39.31 2.29
2452 3245 4.134379 ACTCCAGAGTCATTGCAGTATG 57.866 45.455 0.00 0.00 36.92 2.39
2500 3297 0.675633 GGAATTGCTGCAAGGTGTGT 59.324 50.000 20.72 0.00 0.00 3.72
2538 3335 5.368816 ACTGGAATGAATCATCATCTCCTGA 59.631 40.000 18.99 0.62 45.60 3.86
2543 3340 8.591114 AAAAAGACTGGAATGAATCATCATCT 57.409 30.769 0.00 0.00 45.60 2.90
2575 3372 1.337167 GCCAAAATGACCTCAGGCAAC 60.337 52.381 0.00 0.00 41.63 4.17
2576 3373 0.968405 GCCAAAATGACCTCAGGCAA 59.032 50.000 0.00 0.00 41.63 4.52
2577 3374 0.112995 AGCCAAAATGACCTCAGGCA 59.887 50.000 0.00 0.00 44.34 4.75
2578 3375 1.260544 AAGCCAAAATGACCTCAGGC 58.739 50.000 0.00 0.00 42.31 4.85
2579 3376 2.629617 ACAAAGCCAAAATGACCTCAGG 59.370 45.455 0.00 0.00 0.00 3.86
2580 3377 4.326504 AACAAAGCCAAAATGACCTCAG 57.673 40.909 0.00 0.00 0.00 3.35
2581 3378 4.081198 ACAAACAAAGCCAAAATGACCTCA 60.081 37.500 0.00 0.00 0.00 3.86
2582 3379 4.441792 ACAAACAAAGCCAAAATGACCTC 58.558 39.130 0.00 0.00 0.00 3.85
2583 3380 4.486125 ACAAACAAAGCCAAAATGACCT 57.514 36.364 0.00 0.00 0.00 3.85
2584 3381 5.276631 CGTAACAAACAAAGCCAAAATGACC 60.277 40.000 0.00 0.00 0.00 4.02
2585 3382 5.723237 CGTAACAAACAAAGCCAAAATGAC 58.277 37.500 0.00 0.00 0.00 3.06
2586 3383 4.268884 GCGTAACAAACAAAGCCAAAATGA 59.731 37.500 0.00 0.00 0.00 2.57
2587 3384 4.513581 GCGTAACAAACAAAGCCAAAATG 58.486 39.130 0.00 0.00 0.00 2.32
2588 3385 3.244111 CGCGTAACAAACAAAGCCAAAAT 59.756 39.130 0.00 0.00 0.00 1.82
2589 3386 2.599082 CGCGTAACAAACAAAGCCAAAA 59.401 40.909 0.00 0.00 0.00 2.44
2590 3387 2.186076 CGCGTAACAAACAAAGCCAAA 58.814 42.857 0.00 0.00 0.00 3.28
2591 3388 1.132643 ACGCGTAACAAACAAAGCCAA 59.867 42.857 11.67 0.00 0.00 4.52
2592 3389 0.733729 ACGCGTAACAAACAAAGCCA 59.266 45.000 11.67 0.00 0.00 4.75
2593 3390 2.300914 GTACGCGTAACAAACAAAGCC 58.699 47.619 22.44 0.00 0.00 4.35
2594 3391 1.957897 CGTACGCGTAACAAACAAAGC 59.042 47.619 22.44 3.24 0.00 3.51
2607 3404 2.778641 GCAACAAAGATGTACGTACGCG 60.779 50.000 20.18 3.53 39.40 6.01
2608 3405 2.473376 GGCAACAAAGATGTACGTACGC 60.473 50.000 20.18 14.54 39.40 4.42
2609 3406 2.991190 AGGCAACAAAGATGTACGTACG 59.009 45.455 20.18 15.01 39.40 3.67
2610 3407 3.744426 ACAGGCAACAAAGATGTACGTAC 59.256 43.478 18.90 18.90 39.40 3.67
2611 3408 3.997762 ACAGGCAACAAAGATGTACGTA 58.002 40.909 0.00 0.00 39.40 3.57
2612 3409 2.846193 ACAGGCAACAAAGATGTACGT 58.154 42.857 0.00 0.00 39.40 3.57
2613 3410 3.896648 AACAGGCAACAAAGATGTACG 57.103 42.857 0.00 0.00 39.40 3.67
2614 3411 6.966021 TCTAAAACAGGCAACAAAGATGTAC 58.034 36.000 0.00 0.00 39.40 2.90
2615 3412 7.759489 ATCTAAAACAGGCAACAAAGATGTA 57.241 32.000 0.00 0.00 39.40 2.29
2616 3413 6.655078 ATCTAAAACAGGCAACAAAGATGT 57.345 33.333 0.00 0.00 43.14 3.06
2617 3414 9.722056 GTATATCTAAAACAGGCAACAAAGATG 57.278 33.333 0.00 0.00 41.41 2.90
2618 3415 9.686683 AGTATATCTAAAACAGGCAACAAAGAT 57.313 29.630 0.00 0.00 41.41 2.40
2619 3416 9.162764 GAGTATATCTAAAACAGGCAACAAAGA 57.837 33.333 0.00 0.00 41.41 2.52
2620 3417 8.398665 GGAGTATATCTAAAACAGGCAACAAAG 58.601 37.037 0.00 0.00 41.41 2.77
2621 3418 7.338449 GGGAGTATATCTAAAACAGGCAACAAA 59.662 37.037 0.00 0.00 41.41 2.83
2622 3419 6.826741 GGGAGTATATCTAAAACAGGCAACAA 59.173 38.462 0.00 0.00 41.41 2.83
2623 3420 6.157994 AGGGAGTATATCTAAAACAGGCAACA 59.842 38.462 0.00 0.00 41.41 3.33
2624 3421 6.592870 AGGGAGTATATCTAAAACAGGCAAC 58.407 40.000 0.00 0.00 0.00 4.17
2625 3422 6.183361 GGAGGGAGTATATCTAAAACAGGCAA 60.183 42.308 0.00 0.00 0.00 4.52
2626 3423 5.307196 GGAGGGAGTATATCTAAAACAGGCA 59.693 44.000 0.00 0.00 0.00 4.75
2627 3424 5.567025 CGGAGGGAGTATATCTAAAACAGGC 60.567 48.000 0.00 0.00 0.00 4.85
2628 3425 5.539193 ACGGAGGGAGTATATCTAAAACAGG 59.461 44.000 0.00 0.00 0.00 4.00
2629 3426 6.651975 ACGGAGGGAGTATATCTAAAACAG 57.348 41.667 0.00 0.00 0.00 3.16
2630 3427 6.041296 GGAACGGAGGGAGTATATCTAAAACA 59.959 42.308 0.00 0.00 0.00 2.83
2631 3428 6.267242 AGGAACGGAGGGAGTATATCTAAAAC 59.733 42.308 0.00 0.00 0.00 2.43
2632 3429 6.379579 AGGAACGGAGGGAGTATATCTAAAA 58.620 40.000 0.00 0.00 0.00 1.52
2633 3430 5.961897 AGGAACGGAGGGAGTATATCTAAA 58.038 41.667 0.00 0.00 0.00 1.85
2634 3431 5.595814 AGGAACGGAGGGAGTATATCTAA 57.404 43.478 0.00 0.00 0.00 2.10
2635 3432 6.708885 TTAGGAACGGAGGGAGTATATCTA 57.291 41.667 0.00 0.00 0.00 1.98
2636 3433 5.595814 TTAGGAACGGAGGGAGTATATCT 57.404 43.478 0.00 0.00 0.00 1.98
2637 3434 6.854091 ATTTAGGAACGGAGGGAGTATATC 57.146 41.667 0.00 0.00 0.00 1.63
2638 3435 8.912614 AATATTTAGGAACGGAGGGAGTATAT 57.087 34.615 0.00 0.00 0.00 0.86
2639 3436 8.591072 CAAATATTTAGGAACGGAGGGAGTATA 58.409 37.037 0.00 0.00 0.00 1.47
2640 3437 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
2641 3438 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2642 3439 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2643 3440 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2644 3441 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2645 3442 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2646 3443 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2647 3444 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2648 3445 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2649 3446 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2662 3459 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2663 3460 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2664 3461 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2665 3462 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2666 3463 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2667 3464 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2668 3465 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2669 3466 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2670 3467 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2671 3468 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2672 3469 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2673 3470 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2674 3471 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
2675 3472 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2676 3473 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2677 3474 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2678 3475 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2679 3476 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2680 3477 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2681 3478 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2682 3479 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2683 3480 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2684 3481 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2685 3482 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
2686 3483 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
2687 3484 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
2688 3485 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
2689 3486 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
2690 3487 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2691 3488 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2692 3489 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
2693 3490 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
2694 3491 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
2695 3492 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
2696 3493 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
2697 3494 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2698 3495 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2699 3496 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2700 3497 7.229306 TGAAGTGTAGATTCACTCATTTTGCTT 59.771 33.333 0.00 0.00 46.25 3.91
2701 3498 6.712095 TGAAGTGTAGATTCACTCATTTTGCT 59.288 34.615 0.00 0.00 46.25 3.91
2702 3499 6.902341 TGAAGTGTAGATTCACTCATTTTGC 58.098 36.000 0.00 0.00 46.25 3.68
2703 3500 9.734620 TTTTGAAGTGTAGATTCACTCATTTTG 57.265 29.630 0.00 0.00 46.25 2.44
2708 3505 9.725019 ACATATTTTGAAGTGTAGATTCACTCA 57.275 29.630 0.00 0.00 46.25 3.41
2730 3527 9.927668 CACAACATATGGATGTATGTAGACATA 57.072 33.333 13.93 0.00 45.93 2.29
2731 3528 8.432013 ACACAACATATGGATGTATGTAGACAT 58.568 33.333 13.93 0.08 45.93 3.06
2732 3529 7.791029 ACACAACATATGGATGTATGTAGACA 58.209 34.615 13.93 0.00 45.93 3.41
2733 3530 7.385205 GGACACAACATATGGATGTATGTAGAC 59.615 40.741 13.93 4.88 45.93 2.59
2734 3531 7.070571 TGGACACAACATATGGATGTATGTAGA 59.929 37.037 13.93 1.06 45.93 2.59
2735 3532 7.216494 TGGACACAACATATGGATGTATGTAG 58.784 38.462 13.93 6.43 45.93 2.74
2736 3533 7.130681 TGGACACAACATATGGATGTATGTA 57.869 36.000 13.93 2.66 45.93 2.29
2737 3534 6.000246 TGGACACAACATATGGATGTATGT 58.000 37.500 13.93 10.06 45.93 2.29
2738 3535 7.514784 AATGGACACAACATATGGATGTATG 57.485 36.000 13.93 7.59 45.93 2.39
2739 3536 9.639563 TTAAATGGACACAACATATGGATGTAT 57.360 29.630 13.93 5.46 45.93 2.29
2740 3537 9.467796 TTTAAATGGACACAACATATGGATGTA 57.532 29.630 13.93 2.52 45.93 2.29
2742 3539 9.820725 ATTTTAAATGGACACAACATATGGATG 57.179 29.630 7.80 8.32 39.16 3.51
2743 3540 9.820725 CATTTTAAATGGACACAACATATGGAT 57.179 29.630 9.63 0.00 0.00 3.41
2744 3541 8.811017 ACATTTTAAATGGACACAACATATGGA 58.189 29.630 20.00 0.00 0.00 3.41
2745 3542 9.086336 GACATTTTAAATGGACACAACATATGG 57.914 33.333 20.00 0.00 0.00 2.74
2746 3543 9.859427 AGACATTTTAAATGGACACAACATATG 57.141 29.630 20.00 0.00 0.00 1.78
2749 3546 9.295825 TCTAGACATTTTAAATGGACACAACAT 57.704 29.630 20.00 0.00 0.00 2.71
2750 3547 8.684386 TCTAGACATTTTAAATGGACACAACA 57.316 30.769 20.00 0.00 0.00 3.33
2751 3548 9.959749 TTTCTAGACATTTTAAATGGACACAAC 57.040 29.630 20.00 4.67 0.00 3.32
2753 3550 9.567776 TCTTTCTAGACATTTTAAATGGACACA 57.432 29.630 20.00 6.85 0.00 3.72
2770 3567 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2771 3568 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2772 3569 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2773 3570 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2774 3571 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2775 3572 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2776 3573 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2777 3574 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2778 3575 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2779 3576 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2780 3577 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2781 3578 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2782 3579 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
2783 3580 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2784 3581 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2785 3582 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2786 3583 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2787 3584 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
2788 3585 3.979347 ACTATCTACTCCCTCCGTTCCTA 59.021 47.826 0.00 0.00 0.00 2.94
2789 3586 2.784682 ACTATCTACTCCCTCCGTTCCT 59.215 50.000 0.00 0.00 0.00 3.36
2790 3587 3.226682 ACTATCTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
2791 3588 5.375773 AGTTACTATCTACTCCCTCCGTTC 58.624 45.833 0.00 0.00 0.00 3.95
2792 3589 5.385628 AGTTACTATCTACTCCCTCCGTT 57.614 43.478 0.00 0.00 0.00 4.44
2793 3590 5.385628 AAGTTACTATCTACTCCCTCCGT 57.614 43.478 0.00 0.00 0.00 4.69
2794 3591 5.407995 CGTAAGTTACTATCTACTCCCTCCG 59.592 48.000 11.17 0.00 0.00 4.63
2795 3592 6.529220 TCGTAAGTTACTATCTACTCCCTCC 58.471 44.000 11.17 0.00 39.48 4.30
2796 3593 8.443953 TTTCGTAAGTTACTATCTACTCCCTC 57.556 38.462 11.17 0.00 39.48 4.30
2797 3594 8.993404 ATTTCGTAAGTTACTATCTACTCCCT 57.007 34.615 11.17 0.00 39.48 4.20
2798 3595 8.844244 TGATTTCGTAAGTTACTATCTACTCCC 58.156 37.037 11.17 0.00 39.48 4.30
2803 3600 9.512435 GCACTTGATTTCGTAAGTTACTATCTA 57.488 33.333 11.17 7.29 35.08 1.98
2804 3601 8.251721 AGCACTTGATTTCGTAAGTTACTATCT 58.748 33.333 11.17 0.00 35.08 1.98
2805 3602 8.408743 AGCACTTGATTTCGTAAGTTACTATC 57.591 34.615 11.17 10.71 35.08 2.08
2806 3603 8.033038 TGAGCACTTGATTTCGTAAGTTACTAT 58.967 33.333 11.17 2.35 35.08 2.12
2807 3604 7.327761 GTGAGCACTTGATTTCGTAAGTTACTA 59.672 37.037 11.17 0.00 35.08 1.82
2808 3605 6.145696 GTGAGCACTTGATTTCGTAAGTTACT 59.854 38.462 11.17 0.00 35.08 2.24
2809 3606 6.297353 GTGAGCACTTGATTTCGTAAGTTAC 58.703 40.000 2.72 2.72 35.08 2.50
2810 3607 5.407387 GGTGAGCACTTGATTTCGTAAGTTA 59.593 40.000 0.16 0.00 35.08 2.24
2811 3608 4.213482 GGTGAGCACTTGATTTCGTAAGTT 59.787 41.667 0.16 0.00 35.08 2.66
2812 3609 3.746492 GGTGAGCACTTGATTTCGTAAGT 59.254 43.478 0.16 0.00 37.61 2.24
2813 3610 3.181530 CGGTGAGCACTTGATTTCGTAAG 60.182 47.826 0.16 0.00 0.00 2.34
2814 3611 2.734606 CGGTGAGCACTTGATTTCGTAA 59.265 45.455 0.16 0.00 0.00 3.18
2815 3612 2.029739 TCGGTGAGCACTTGATTTCGTA 60.030 45.455 0.16 0.00 0.00 3.43
2816 3613 1.148310 CGGTGAGCACTTGATTTCGT 58.852 50.000 0.16 0.00 0.00 3.85
2817 3614 1.126846 GTCGGTGAGCACTTGATTTCG 59.873 52.381 0.16 0.00 0.00 3.46
2818 3615 1.126846 CGTCGGTGAGCACTTGATTTC 59.873 52.381 0.16 0.00 0.00 2.17
2819 3616 1.148310 CGTCGGTGAGCACTTGATTT 58.852 50.000 0.16 0.00 0.00 2.17
2820 3617 0.670546 CCGTCGGTGAGCACTTGATT 60.671 55.000 2.08 0.00 0.00 2.57
2821 3618 1.079819 CCGTCGGTGAGCACTTGAT 60.080 57.895 2.08 0.00 0.00 2.57
2822 3619 2.197605 TCCGTCGGTGAGCACTTGA 61.198 57.895 11.88 0.00 0.00 3.02
2823 3620 2.022129 GTCCGTCGGTGAGCACTTG 61.022 63.158 11.88 0.00 0.00 3.16
2824 3621 2.338984 GTCCGTCGGTGAGCACTT 59.661 61.111 11.88 0.00 0.00 3.16
2825 3622 3.681835 GGTCCGTCGGTGAGCACT 61.682 66.667 11.88 0.00 0.00 4.40
2826 3623 3.916392 CTGGTCCGTCGGTGAGCAC 62.916 68.421 11.88 0.91 35.47 4.40
2827 3624 3.680786 CTGGTCCGTCGGTGAGCA 61.681 66.667 11.88 7.91 37.86 4.26
2828 3625 2.711922 ATCTGGTCCGTCGGTGAGC 61.712 63.158 11.88 2.99 0.00 4.26
2829 3626 1.139734 CATCTGGTCCGTCGGTGAG 59.860 63.158 11.88 5.93 0.00 3.51
2830 3627 1.592400 GACATCTGGTCCGTCGGTGA 61.592 60.000 11.88 6.36 40.83 4.02
2831 3628 1.153823 GACATCTGGTCCGTCGGTG 60.154 63.158 11.88 3.32 40.83 4.94
2832 3629 2.697761 CGACATCTGGTCCGTCGGT 61.698 63.158 11.88 0.00 46.59 4.69
2833 3630 2.102357 CGACATCTGGTCCGTCGG 59.898 66.667 4.39 4.39 46.59 4.79
2835 3632 0.736325 CCAACGACATCTGGTCCGTC 60.736 60.000 0.00 0.00 43.95 4.79
2836 3633 1.292223 CCAACGACATCTGGTCCGT 59.708 57.895 0.00 0.00 43.95 4.69
2837 3634 2.100631 GCCAACGACATCTGGTCCG 61.101 63.158 0.00 0.00 43.95 4.79
2838 3635 1.745489 GGCCAACGACATCTGGTCC 60.745 63.158 0.00 0.00 43.95 4.46
2839 3636 0.321653 AAGGCCAACGACATCTGGTC 60.322 55.000 5.01 0.00 43.36 4.02
2840 3637 0.606401 CAAGGCCAACGACATCTGGT 60.606 55.000 5.01 0.00 34.97 4.00
2841 3638 1.926511 GCAAGGCCAACGACATCTGG 61.927 60.000 5.01 0.00 35.67 3.86
2842 3639 1.503542 GCAAGGCCAACGACATCTG 59.496 57.895 5.01 0.00 0.00 2.90
2843 3640 3.987404 GCAAGGCCAACGACATCT 58.013 55.556 5.01 0.00 0.00 2.90
2854 3651 1.134907 CCAGATGAAACATGGCAAGGC 60.135 52.381 0.00 0.00 0.00 4.35
2855 3652 2.173519 ACCAGATGAAACATGGCAAGG 58.826 47.619 0.00 0.00 37.64 3.61
2856 3653 3.947910 AACCAGATGAAACATGGCAAG 57.052 42.857 0.00 0.00 37.64 4.01
2857 3654 5.538053 TCTTAAACCAGATGAAACATGGCAA 59.462 36.000 0.00 0.00 37.64 4.52
2858 3655 5.076182 TCTTAAACCAGATGAAACATGGCA 58.924 37.500 0.00 0.00 37.64 4.92
2859 3656 5.643379 TCTTAAACCAGATGAAACATGGC 57.357 39.130 0.00 0.00 37.64 4.40
2860 3657 7.037438 CCAATCTTAAACCAGATGAAACATGG 58.963 38.462 0.00 0.00 40.10 3.66
2861 3658 6.532657 GCCAATCTTAAACCAGATGAAACATG 59.467 38.462 0.00 0.00 33.52 3.21
2862 3659 6.438425 AGCCAATCTTAAACCAGATGAAACAT 59.562 34.615 0.00 0.00 33.52 2.71
2863 3660 5.774690 AGCCAATCTTAAACCAGATGAAACA 59.225 36.000 0.00 0.00 33.52 2.83
2864 3661 6.095377 CAGCCAATCTTAAACCAGATGAAAC 58.905 40.000 0.00 0.00 33.52 2.78
2865 3662 5.336690 GCAGCCAATCTTAAACCAGATGAAA 60.337 40.000 0.00 0.00 33.52 2.69
2866 3663 4.158394 GCAGCCAATCTTAAACCAGATGAA 59.842 41.667 0.00 0.00 33.52 2.57
2867 3664 3.696051 GCAGCCAATCTTAAACCAGATGA 59.304 43.478 0.00 0.00 33.52 2.92
2868 3665 3.698040 AGCAGCCAATCTTAAACCAGATG 59.302 43.478 0.00 0.00 33.52 2.90
2869 3666 3.698040 CAGCAGCCAATCTTAAACCAGAT 59.302 43.478 0.00 0.00 34.78 2.90
2870 3667 3.084039 CAGCAGCCAATCTTAAACCAGA 58.916 45.455 0.00 0.00 0.00 3.86
2871 3668 3.084039 TCAGCAGCCAATCTTAAACCAG 58.916 45.455 0.00 0.00 0.00 4.00
2872 3669 3.084039 CTCAGCAGCCAATCTTAAACCA 58.916 45.455 0.00 0.00 0.00 3.67
2873 3670 2.424956 CCTCAGCAGCCAATCTTAAACC 59.575 50.000 0.00 0.00 0.00 3.27
2874 3671 2.159324 GCCTCAGCAGCCAATCTTAAAC 60.159 50.000 0.00 0.00 39.53 2.01
2875 3672 2.094675 GCCTCAGCAGCCAATCTTAAA 58.905 47.619 0.00 0.00 39.53 1.52
2876 3673 1.755179 GCCTCAGCAGCCAATCTTAA 58.245 50.000 0.00 0.00 39.53 1.85
2877 3674 3.483954 GCCTCAGCAGCCAATCTTA 57.516 52.632 0.00 0.00 39.53 2.10
2878 3675 4.333417 GCCTCAGCAGCCAATCTT 57.667 55.556 0.00 0.00 39.53 2.40
2885 3682 2.436292 CTCACTGGCCTCAGCAGC 60.436 66.667 3.32 0.00 44.59 5.25
2886 3683 2.268280 CCTCACTGGCCTCAGCAG 59.732 66.667 3.32 0.00 44.59 4.24
2887 3684 2.203832 TCCTCACTGGCCTCAGCA 60.204 61.111 3.32 0.00 44.59 4.41
2888 3685 2.267324 GTCCTCACTGGCCTCAGC 59.733 66.667 3.32 0.00 44.59 4.26
2889 3686 0.902048 TCTGTCCTCACTGGCCTCAG 60.902 60.000 3.32 0.00 46.10 3.35
2890 3687 1.156095 TCTGTCCTCACTGGCCTCA 59.844 57.895 3.32 0.00 35.26 3.86
2891 3688 1.188219 TGTCTGTCCTCACTGGCCTC 61.188 60.000 3.32 0.00 35.26 4.70
2892 3689 0.546267 ATGTCTGTCCTCACTGGCCT 60.546 55.000 3.32 0.00 35.26 5.19
2893 3690 0.326264 AATGTCTGTCCTCACTGGCC 59.674 55.000 0.00 0.00 35.26 5.36
2894 3691 1.808945 CAAATGTCTGTCCTCACTGGC 59.191 52.381 0.00 0.00 35.26 4.85
2895 3692 1.808945 GCAAATGTCTGTCCTCACTGG 59.191 52.381 0.00 0.00 37.10 4.00
2896 3693 2.740981 GAGCAAATGTCTGTCCTCACTG 59.259 50.000 0.00 0.00 0.00 3.66
2897 3694 2.369860 TGAGCAAATGTCTGTCCTCACT 59.630 45.455 0.00 0.00 0.00 3.41
2898 3695 2.771089 TGAGCAAATGTCTGTCCTCAC 58.229 47.619 0.00 0.00 0.00 3.51
2899 3696 3.071457 TCTTGAGCAAATGTCTGTCCTCA 59.929 43.478 0.00 0.00 0.00 3.86
2900 3697 3.668447 TCTTGAGCAAATGTCTGTCCTC 58.332 45.455 0.00 0.00 0.00 3.71
2901 3698 3.777106 TCTTGAGCAAATGTCTGTCCT 57.223 42.857 0.00 0.00 0.00 3.85
2902 3699 6.150140 AGTTAATCTTGAGCAAATGTCTGTCC 59.850 38.462 0.00 0.00 0.00 4.02
2903 3700 7.020010 CAGTTAATCTTGAGCAAATGTCTGTC 58.980 38.462 0.00 0.00 0.00 3.51
2904 3701 6.712095 TCAGTTAATCTTGAGCAAATGTCTGT 59.288 34.615 0.00 0.00 0.00 3.41
2905 3702 7.020010 GTCAGTTAATCTTGAGCAAATGTCTG 58.980 38.462 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.