Multiple sequence alignment - TraesCS1B01G414200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G414200 chr1B 100.000 3151 0 0 1 3151 639411677 639414827 0.000000e+00 5819.0
1 TraesCS1B01G414200 chr1B 90.962 1029 86 4 1296 2318 41987436 41988463 0.000000e+00 1378.0
2 TraesCS1B01G414200 chr1B 86.656 652 74 7 433 1082 41973933 41973293 0.000000e+00 710.0
3 TraesCS1B01G414200 chr1B 90.367 436 39 3 1 433 417513518 417513083 1.270000e-158 569.0
4 TraesCS1B01G414200 chr1B 91.791 134 8 1 2955 3088 41988718 41988848 1.930000e-42 183.0
5 TraesCS1B01G414200 chr1B 92.473 93 5 2 787 878 639412554 639412463 7.090000e-27 132.0
6 TraesCS1B01G414200 chr1B 85.965 114 7 5 2787 2897 41988595 41988702 2.570000e-21 113.0
7 TraesCS1B01G414200 chr1A 88.755 2081 180 19 704 2739 6900941 6898870 0.000000e+00 2497.0
8 TraesCS1B01G414200 chr1A 89.901 1515 139 9 851 2363 6884913 6883411 0.000000e+00 1938.0
9 TraesCS1B01G414200 chr1A 89.955 1105 89 7 1272 2370 6914521 6913433 0.000000e+00 1406.0
10 TraesCS1B01G414200 chr1A 76.452 310 42 9 480 786 6885267 6884986 4.240000e-29 139.0
11 TraesCS1B01G414200 chr1A 91.011 89 6 2 787 874 6900749 6900836 5.520000e-23 119.0
12 TraesCS1B01G414200 chr1A 94.118 68 3 1 431 497 6901025 6900958 5.560000e-18 102.0
13 TraesCS1B01G414200 chr1A 100.000 31 0 0 2299 2329 3790948 3790978 1.220000e-04 58.4
14 TraesCS1B01G414200 chr1D 89.769 1642 135 11 704 2318 5423492 5425127 0.000000e+00 2071.0
15 TraesCS1B01G414200 chr1D 89.447 1175 80 12 431 1581 5467408 5466254 0.000000e+00 1443.0
16 TraesCS1B01G414200 chr1D 93.296 358 23 1 1629 1985 5466256 5465899 7.740000e-146 527.0
17 TraesCS1B01G414200 chr1D 87.842 329 33 2 2035 2363 5465901 5465580 2.290000e-101 379.0
18 TraesCS1B01G414200 chr1D 83.439 314 23 8 2787 3088 5425259 5425555 6.700000e-67 265.0
19 TraesCS1B01G414200 chr1D 91.011 89 6 2 787 874 5423684 5423597 5.520000e-23 119.0
20 TraesCS1B01G414200 chr1D 95.238 63 3 0 3089 3151 5425613 5425675 2.000000e-17 100.0
21 TraesCS1B01G414200 chr1D 96.875 32 1 0 2300 2331 17967148 17967117 2.000000e-03 54.7
22 TraesCS1B01G414200 chr1D 100.000 28 0 0 2299 2326 307215938 307215965 6.000000e-03 52.8
23 TraesCS1B01G414200 chr2B 93.318 434 26 1 1 431 681381282 681381715 3.430000e-179 638.0
24 TraesCS1B01G414200 chr2B 93.088 434 27 1 1 431 726039955 726040388 1.590000e-177 632.0
25 TraesCS1B01G414200 chr2B 91.034 435 36 2 1 432 212786306 212785872 4.530000e-163 584.0
26 TraesCS1B01G414200 chr2B 90.596 436 38 2 1 433 489533782 489533347 2.730000e-160 575.0
27 TraesCS1B01G414200 chr2B 97.674 86 2 0 789 874 728343399 728343314 7.040000e-32 148.0
28 TraesCS1B01G414200 chr2B 87.912 91 9 1 787 875 511037106 511037196 4.300000e-19 106.0
29 TraesCS1B01G414200 chr5B 91.935 434 32 1 1 431 397467356 397467789 3.480000e-169 604.0
30 TraesCS1B01G414200 chr5B 90.596 436 38 1 1 433 378801054 378801489 2.730000e-160 575.0
31 TraesCS1B01G414200 chr3B 91.055 436 36 1 1 433 110533866 110534301 1.260000e-163 586.0
32 TraesCS1B01G414200 chr3B 89.474 95 8 2 783 875 704578416 704578510 5.520000e-23 119.0
33 TraesCS1B01G414200 chr4A 90.762 433 37 1 1 430 674980743 674980311 2.730000e-160 575.0
34 TraesCS1B01G414200 chr2D 96.703 91 3 0 789 879 598951321 598951231 5.440000e-33 152.0
35 TraesCS1B01G414200 chr2D 90.722 97 9 0 789 885 114517569 114517665 2.550000e-26 130.0
36 TraesCS1B01G414200 chr2D 94.737 38 1 1 2299 2335 5553624 5553661 1.220000e-04 58.4
37 TraesCS1B01G414200 chr6D 96.512 86 3 0 789 874 422072110 422072025 3.280000e-30 143.0
38 TraesCS1B01G414200 chr6D 90.816 98 7 2 789 885 422072023 422072119 2.550000e-26 130.0
39 TraesCS1B01G414200 chr6D 87.097 93 8 3 789 879 7414609 7414519 5.560000e-18 102.0
40 TraesCS1B01G414200 chr6D 97.222 36 1 0 2299 2334 402134751 402134786 9.440000e-06 62.1
41 TraesCS1B01G414200 chr6D 92.105 38 2 1 2299 2335 139418348 139418385 6.000000e-03 52.8
42 TraesCS1B01G414200 chr3D 95.349 86 4 0 789 874 445019128 445019043 1.520000e-28 137.0
43 TraesCS1B01G414200 chr3D 90.526 95 6 3 782 874 445019033 445019126 4.270000e-24 122.0
44 TraesCS1B01G414200 chr3A 85.859 99 11 3 776 874 13151541 13151636 5.560000e-18 102.0
45 TraesCS1B01G414200 chr6B 97.297 37 1 0 2299 2335 532385256 532385220 2.620000e-06 63.9
46 TraesCS1B01G414200 chr5A 91.489 47 2 2 2300 2346 473042708 473042752 2.620000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G414200 chr1B 639411677 639414827 3150 False 5819.0 5819 100.000000 1 3151 1 chr1B.!!$F1 3150
1 TraesCS1B01G414200 chr1B 41973293 41973933 640 True 710.0 710 86.656000 433 1082 1 chr1B.!!$R1 649
2 TraesCS1B01G414200 chr1B 41987436 41988848 1412 False 558.0 1378 89.572667 1296 3088 3 chr1B.!!$F2 1792
3 TraesCS1B01G414200 chr1A 6913433 6914521 1088 True 1406.0 1406 89.955000 1272 2370 1 chr1A.!!$R1 1098
4 TraesCS1B01G414200 chr1A 6898870 6901025 2155 True 1299.5 2497 91.436500 431 2739 2 chr1A.!!$R3 2308
5 TraesCS1B01G414200 chr1A 6883411 6885267 1856 True 1038.5 1938 83.176500 480 2363 2 chr1A.!!$R2 1883
6 TraesCS1B01G414200 chr1D 5423492 5425675 2183 False 812.0 2071 89.482000 704 3151 3 chr1D.!!$F2 2447
7 TraesCS1B01G414200 chr1D 5465580 5467408 1828 True 783.0 1443 90.195000 431 2363 3 chr1D.!!$R3 1932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.034476 GCATGCGGATGAGGATGAGA 59.966 55.0 22.14 0.0 41.63 3.27 F
1596 1626 0.107643 TGGTGACGTGAAATCTGCCA 59.892 50.0 0.00 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 2021 0.321653 GGCTTCAGACAATCCACGGT 60.322 55.0 0.0 0.0 0.0 4.83 R
2862 3028 0.107848 CATCGGAACAGTACACCCCC 60.108 60.0 0.0 0.0 0.0 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.815133 AAGGTGCATGCCTATCTGG 57.185 52.632 16.68 0.00 38.03 3.86
19 20 0.921896 AAGGTGCATGCCTATCTGGT 59.078 50.000 16.68 0.00 38.03 4.00
20 21 0.182061 AGGTGCATGCCTATCTGGTG 59.818 55.000 16.68 0.00 37.04 4.17
21 22 0.820891 GGTGCATGCCTATCTGGTGG 60.821 60.000 16.68 0.00 38.35 4.61
22 23 0.181114 GTGCATGCCTATCTGGTGGA 59.819 55.000 16.68 0.00 38.35 4.02
23 24 1.142936 TGCATGCCTATCTGGTGGAT 58.857 50.000 16.68 0.00 38.35 3.41
24 25 2.038952 GTGCATGCCTATCTGGTGGATA 59.961 50.000 16.68 0.00 38.35 2.59
25 26 2.914941 TGCATGCCTATCTGGTGGATAT 59.085 45.455 16.68 0.00 36.45 1.63
26 27 3.276857 GCATGCCTATCTGGTGGATATG 58.723 50.000 6.36 0.00 36.45 1.78
27 28 3.054875 GCATGCCTATCTGGTGGATATGA 60.055 47.826 6.36 0.00 36.45 2.15
28 29 4.384978 GCATGCCTATCTGGTGGATATGAT 60.385 45.833 6.36 0.00 36.45 2.45
29 30 4.831674 TGCCTATCTGGTGGATATGATG 57.168 45.455 0.00 0.00 36.45 3.07
30 31 3.054875 TGCCTATCTGGTGGATATGATGC 60.055 47.826 0.00 0.00 36.45 3.91
31 32 3.199508 GCCTATCTGGTGGATATGATGCT 59.800 47.826 0.00 0.00 36.45 3.79
32 33 4.682859 GCCTATCTGGTGGATATGATGCTC 60.683 50.000 0.00 0.00 36.45 4.26
33 34 4.468868 CCTATCTGGTGGATATGATGCTCA 59.531 45.833 0.00 0.00 36.45 4.26
34 35 5.130643 CCTATCTGGTGGATATGATGCTCAT 59.869 44.000 4.45 4.45 40.72 2.90
35 36 4.987963 TCTGGTGGATATGATGCTCATT 57.012 40.909 4.35 0.00 38.26 2.57
36 37 5.314718 TCTGGTGGATATGATGCTCATTT 57.685 39.130 4.35 0.00 38.26 2.32
37 38 5.067954 TCTGGTGGATATGATGCTCATTTG 58.932 41.667 4.35 0.00 38.26 2.32
38 39 4.795469 TGGTGGATATGATGCTCATTTGT 58.205 39.130 4.35 0.00 38.26 2.83
39 40 4.581409 TGGTGGATATGATGCTCATTTGTG 59.419 41.667 4.35 0.00 38.26 3.33
40 41 4.823442 GGTGGATATGATGCTCATTTGTGA 59.177 41.667 4.35 0.00 38.26 3.58
41 42 5.048921 GGTGGATATGATGCTCATTTGTGAG 60.049 44.000 4.35 1.17 38.26 3.51
42 43 5.048921 GTGGATATGATGCTCATTTGTGAGG 60.049 44.000 7.47 0.00 38.26 3.86
43 44 5.163174 TGGATATGATGCTCATTTGTGAGGA 60.163 40.000 7.47 4.94 38.26 3.71
44 45 5.180868 GGATATGATGCTCATTTGTGAGGAC 59.819 44.000 7.47 1.47 39.02 3.85
45 46 2.349590 TGATGCTCATTTGTGAGGACG 58.650 47.619 7.47 0.00 39.02 4.79
46 47 1.063174 GATGCTCATTTGTGAGGACGC 59.937 52.381 7.47 0.00 39.02 5.19
47 48 1.291184 TGCTCATTTGTGAGGACGCG 61.291 55.000 3.53 3.53 36.49 6.01
48 49 1.291877 GCTCATTTGTGAGGACGCGT 61.292 55.000 13.85 13.85 36.49 6.01
49 50 0.439985 CTCATTTGTGAGGACGCGTG 59.560 55.000 20.70 0.00 32.56 5.34
50 51 0.249699 TCATTTGTGAGGACGCGTGT 60.250 50.000 20.70 0.00 0.00 4.49
51 52 0.163788 CATTTGTGAGGACGCGTGTC 59.836 55.000 20.70 20.76 44.72 3.67
59 60 3.075998 GACGCGTGTCATGCTCAG 58.924 61.111 20.70 2.45 44.82 3.35
60 61 1.444383 GACGCGTGTCATGCTCAGA 60.444 57.895 20.70 0.00 44.82 3.27
61 62 1.678269 GACGCGTGTCATGCTCAGAC 61.678 60.000 20.70 0.00 44.82 3.51
62 63 2.782045 CGCGTGTCATGCTCAGACG 61.782 63.158 14.93 0.00 38.83 4.18
63 64 3.075998 CGTGTCATGCTCAGACGC 58.924 61.111 7.08 7.08 41.73 5.19
64 65 1.734117 CGTGTCATGCTCAGACGCA 60.734 57.895 14.39 0.00 44.51 5.24
65 66 1.284297 CGTGTCATGCTCAGACGCAA 61.284 55.000 14.39 0.00 44.51 4.85
66 67 0.164647 GTGTCATGCTCAGACGCAAC 59.835 55.000 10.84 0.00 44.06 4.17
67 68 0.950555 TGTCATGCTCAGACGCAACC 60.951 55.000 0.00 0.00 44.06 3.77
68 69 0.950555 GTCATGCTCAGACGCAACCA 60.951 55.000 0.00 0.00 44.06 3.67
69 70 0.950555 TCATGCTCAGACGCAACCAC 60.951 55.000 0.00 0.00 44.06 4.16
70 71 0.952497 CATGCTCAGACGCAACCACT 60.952 55.000 0.00 0.00 44.06 4.00
71 72 0.250467 ATGCTCAGACGCAACCACTT 60.250 50.000 0.00 0.00 44.06 3.16
72 73 1.159713 TGCTCAGACGCAACCACTTG 61.160 55.000 0.00 0.00 36.89 3.16
73 74 0.880278 GCTCAGACGCAACCACTTGA 60.880 55.000 0.00 0.00 0.00 3.02
74 75 1.800805 CTCAGACGCAACCACTTGAT 58.199 50.000 0.00 0.00 0.00 2.57
75 76 1.462283 CTCAGACGCAACCACTTGATG 59.538 52.381 0.00 0.00 0.00 3.07
76 77 1.202639 TCAGACGCAACCACTTGATGT 60.203 47.619 0.00 0.00 0.00 3.06
77 78 1.195448 CAGACGCAACCACTTGATGTC 59.805 52.381 0.00 0.00 35.82 3.06
78 79 1.070758 AGACGCAACCACTTGATGTCT 59.929 47.619 0.00 0.00 38.67 3.41
79 80 1.461127 GACGCAACCACTTGATGTCTC 59.539 52.381 0.00 0.00 34.16 3.36
80 81 1.202639 ACGCAACCACTTGATGTCTCA 60.203 47.619 0.00 0.00 0.00 3.27
81 82 1.195448 CGCAACCACTTGATGTCTCAC 59.805 52.381 0.00 0.00 0.00 3.51
82 83 2.221169 GCAACCACTTGATGTCTCACA 58.779 47.619 0.00 0.00 0.00 3.58
83 84 2.816087 GCAACCACTTGATGTCTCACAT 59.184 45.455 0.00 0.00 42.43 3.21
84 85 4.002982 GCAACCACTTGATGTCTCACATA 58.997 43.478 0.00 0.00 39.27 2.29
85 86 4.637534 GCAACCACTTGATGTCTCACATAT 59.362 41.667 0.00 0.00 39.27 1.78
86 87 5.124457 GCAACCACTTGATGTCTCACATATT 59.876 40.000 0.00 0.00 39.27 1.28
87 88 6.316140 GCAACCACTTGATGTCTCACATATTA 59.684 38.462 0.00 0.00 39.27 0.98
88 89 7.012704 GCAACCACTTGATGTCTCACATATTAT 59.987 37.037 0.00 0.00 39.27 1.28
89 90 8.340443 CAACCACTTGATGTCTCACATATTATG 58.660 37.037 2.03 2.03 39.27 1.90
90 91 6.484643 ACCACTTGATGTCTCACATATTATGC 59.515 38.462 3.52 0.00 39.27 3.14
91 92 6.347160 CCACTTGATGTCTCACATATTATGCG 60.347 42.308 3.52 0.00 39.27 4.73
92 93 5.698089 ACTTGATGTCTCACATATTATGCGG 59.302 40.000 3.52 0.00 39.27 5.69
93 94 5.213891 TGATGTCTCACATATTATGCGGT 57.786 39.130 3.52 0.00 39.27 5.68
94 95 4.990426 TGATGTCTCACATATTATGCGGTG 59.010 41.667 3.52 0.00 39.27 4.94
95 96 3.130633 TGTCTCACATATTATGCGGTGC 58.869 45.455 3.52 0.00 0.00 5.01
96 97 2.155732 GTCTCACATATTATGCGGTGCG 59.844 50.000 3.52 0.00 0.00 5.34
97 98 2.035321 TCTCACATATTATGCGGTGCGA 59.965 45.455 3.52 0.00 0.00 5.10
98 99 2.403259 TCACATATTATGCGGTGCGAG 58.597 47.619 3.52 0.00 0.00 5.03
99 100 1.136252 CACATATTATGCGGTGCGAGC 60.136 52.381 3.52 0.00 0.00 5.03
100 101 1.270305 ACATATTATGCGGTGCGAGCT 60.270 47.619 3.52 0.00 35.28 4.09
101 102 1.800586 CATATTATGCGGTGCGAGCTT 59.199 47.619 0.00 0.00 35.28 3.74
102 103 1.497991 TATTATGCGGTGCGAGCTTC 58.502 50.000 0.00 0.00 35.28 3.86
103 104 0.461870 ATTATGCGGTGCGAGCTTCA 60.462 50.000 0.00 0.00 35.28 3.02
104 105 0.672091 TTATGCGGTGCGAGCTTCAA 60.672 50.000 0.00 0.00 35.28 2.69
105 106 0.461870 TATGCGGTGCGAGCTTCAAT 60.462 50.000 0.00 0.00 35.28 2.57
106 107 1.308069 ATGCGGTGCGAGCTTCAATT 61.308 50.000 0.00 0.00 35.28 2.32
107 108 1.210155 GCGGTGCGAGCTTCAATTT 59.790 52.632 0.00 0.00 0.00 1.82
108 109 1.067199 GCGGTGCGAGCTTCAATTTG 61.067 55.000 0.00 0.00 0.00 2.32
109 110 1.067199 CGGTGCGAGCTTCAATTTGC 61.067 55.000 0.00 0.00 0.00 3.68
110 111 1.067199 GGTGCGAGCTTCAATTTGCG 61.067 55.000 0.00 0.00 0.00 4.85
111 112 1.067199 GTGCGAGCTTCAATTTGCGG 61.067 55.000 0.00 0.00 0.00 5.69
112 113 1.210155 GCGAGCTTCAATTTGCGGT 59.790 52.632 0.00 0.00 0.00 5.68
113 114 1.067199 GCGAGCTTCAATTTGCGGTG 61.067 55.000 0.00 0.00 0.00 4.94
114 115 0.238289 CGAGCTTCAATTTGCGGTGT 59.762 50.000 0.00 0.00 0.00 4.16
115 116 1.334960 CGAGCTTCAATTTGCGGTGTT 60.335 47.619 0.00 0.00 0.00 3.32
116 117 2.319472 GAGCTTCAATTTGCGGTGTTC 58.681 47.619 0.00 0.00 0.00 3.18
117 118 1.680735 AGCTTCAATTTGCGGTGTTCA 59.319 42.857 0.00 0.00 0.00 3.18
118 119 2.100584 AGCTTCAATTTGCGGTGTTCAA 59.899 40.909 0.00 0.00 0.00 2.69
119 120 2.218530 GCTTCAATTTGCGGTGTTCAAC 59.781 45.455 0.00 0.00 0.00 3.18
120 121 2.500509 TCAATTTGCGGTGTTCAACC 57.499 45.000 0.00 0.00 46.60 3.77
149 150 2.867109 CCATCTATGGGCCTTACCTG 57.133 55.000 4.53 1.09 44.31 4.00
150 151 2.057922 CCATCTATGGGCCTTACCTGT 58.942 52.381 4.53 0.00 44.31 4.00
151 152 2.443255 CCATCTATGGGCCTTACCTGTT 59.557 50.000 4.53 0.00 44.31 3.16
152 153 3.117512 CCATCTATGGGCCTTACCTGTTT 60.118 47.826 4.53 0.00 44.31 2.83
153 154 3.926058 TCTATGGGCCTTACCTGTTTC 57.074 47.619 4.53 0.00 39.10 2.78
154 155 3.460825 TCTATGGGCCTTACCTGTTTCT 58.539 45.455 4.53 0.00 39.10 2.52
155 156 2.808906 ATGGGCCTTACCTGTTTCTC 57.191 50.000 4.53 0.00 39.10 2.87
156 157 1.742308 TGGGCCTTACCTGTTTCTCT 58.258 50.000 4.53 0.00 39.10 3.10
157 158 2.062636 TGGGCCTTACCTGTTTCTCTT 58.937 47.619 4.53 0.00 39.10 2.85
158 159 2.224769 TGGGCCTTACCTGTTTCTCTTG 60.225 50.000 4.53 0.00 39.10 3.02
159 160 2.039879 GGGCCTTACCTGTTTCTCTTGA 59.960 50.000 0.84 0.00 39.10 3.02
160 161 3.308473 GGGCCTTACCTGTTTCTCTTGAT 60.308 47.826 0.84 0.00 39.10 2.57
161 162 3.942115 GGCCTTACCTGTTTCTCTTGATC 59.058 47.826 0.00 0.00 34.51 2.92
162 163 4.323868 GGCCTTACCTGTTTCTCTTGATCT 60.324 45.833 0.00 0.00 34.51 2.75
163 164 4.873259 GCCTTACCTGTTTCTCTTGATCTC 59.127 45.833 0.00 0.00 0.00 2.75
164 165 5.423886 CCTTACCTGTTTCTCTTGATCTCC 58.576 45.833 0.00 0.00 0.00 3.71
165 166 5.046304 CCTTACCTGTTTCTCTTGATCTCCA 60.046 44.000 0.00 0.00 0.00 3.86
166 167 4.982241 ACCTGTTTCTCTTGATCTCCAA 57.018 40.909 0.00 0.00 0.00 3.53
184 185 3.415457 CAAGACTTGGGAGAAGCTCTT 57.585 47.619 7.35 0.00 0.00 2.85
185 186 3.333804 CAAGACTTGGGAGAAGCTCTTC 58.666 50.000 7.35 1.52 39.78 2.87
186 187 1.905894 AGACTTGGGAGAAGCTCTTCC 59.094 52.381 7.73 7.73 42.80 3.46
187 188 0.988063 ACTTGGGAGAAGCTCTTCCC 59.012 55.000 22.70 22.70 41.73 3.97
188 189 0.254462 CTTGGGAGAAGCTCTTCCCC 59.746 60.000 25.14 20.21 41.73 4.81
189 190 4.153957 GGGAGAAGCTCTTCCCCA 57.846 61.111 20.07 0.00 43.54 4.96
190 191 0.475632 TGGGAGAAGCTCTTCCCCAA 60.476 55.000 25.14 9.07 46.94 4.12
191 192 0.922626 GGGAGAAGCTCTTCCCCAAT 59.077 55.000 20.07 1.26 43.54 3.16
192 193 1.409381 GGGAGAAGCTCTTCCCCAATG 60.409 57.143 20.07 0.00 43.54 2.82
193 194 1.561542 GGAGAAGCTCTTCCCCAATGA 59.438 52.381 5.44 0.00 37.41 2.57
194 195 2.421248 GGAGAAGCTCTTCCCCAATGAG 60.421 54.545 5.44 0.00 37.41 2.90
195 196 1.563410 AGAAGCTCTTCCCCAATGAGG 59.437 52.381 6.04 0.00 40.33 3.86
196 197 1.561542 GAAGCTCTTCCCCAATGAGGA 59.438 52.381 0.00 0.00 34.77 3.71
197 198 1.211456 AGCTCTTCCCCAATGAGGAG 58.789 55.000 0.00 0.00 40.42 3.69
198 199 0.915364 GCTCTTCCCCAATGAGGAGT 59.085 55.000 0.00 0.00 39.82 3.85
199 200 1.283321 GCTCTTCCCCAATGAGGAGTT 59.717 52.381 0.00 0.00 39.82 3.01
200 201 2.291217 GCTCTTCCCCAATGAGGAGTTT 60.291 50.000 0.00 0.00 39.82 2.66
201 202 3.350833 CTCTTCCCCAATGAGGAGTTTG 58.649 50.000 0.00 0.00 41.22 2.93
202 203 2.716424 TCTTCCCCAATGAGGAGTTTGT 59.284 45.455 0.00 0.00 41.22 2.83
203 204 3.140144 TCTTCCCCAATGAGGAGTTTGTT 59.860 43.478 0.00 0.00 41.22 2.83
204 205 2.875296 TCCCCAATGAGGAGTTTGTTG 58.125 47.619 0.00 0.00 41.22 3.33
205 206 1.273327 CCCCAATGAGGAGTTTGTTGC 59.727 52.381 0.00 0.00 41.22 4.17
206 207 1.273327 CCCAATGAGGAGTTTGTTGCC 59.727 52.381 0.00 0.00 41.22 4.52
207 208 1.273327 CCAATGAGGAGTTTGTTGCCC 59.727 52.381 0.00 0.00 41.22 5.36
208 209 1.273327 CAATGAGGAGTTTGTTGCCCC 59.727 52.381 0.00 0.00 0.00 5.80
209 210 0.251787 ATGAGGAGTTTGTTGCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
210 211 1.971695 GAGGAGTTTGTTGCCCCCG 60.972 63.158 0.00 0.00 0.00 5.73
211 212 2.989253 GGAGTTTGTTGCCCCCGG 60.989 66.667 0.00 0.00 0.00 5.73
222 223 4.547367 CCCCCGGCTGGATTCGTC 62.547 72.222 15.09 0.00 37.49 4.20
223 224 3.781307 CCCCGGCTGGATTCGTCA 61.781 66.667 15.09 0.00 37.49 4.35
224 225 2.505982 CCCGGCTGGATTCGTCAT 59.494 61.111 15.09 0.00 37.49 3.06
225 226 1.889105 CCCGGCTGGATTCGTCATG 60.889 63.158 15.09 0.00 37.49 3.07
226 227 1.143838 CCGGCTGGATTCGTCATGA 59.856 57.895 5.28 0.00 37.49 3.07
227 228 0.877649 CCGGCTGGATTCGTCATGAG 60.878 60.000 5.28 0.00 37.49 2.90
228 229 1.493950 CGGCTGGATTCGTCATGAGC 61.494 60.000 0.00 0.00 0.00 4.26
229 230 1.162800 GGCTGGATTCGTCATGAGCC 61.163 60.000 0.00 0.00 39.31 4.70
230 231 0.179062 GCTGGATTCGTCATGAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
231 232 1.579698 CTGGATTCGTCATGAGCCTG 58.420 55.000 0.00 0.00 0.00 4.85
232 233 0.904649 TGGATTCGTCATGAGCCTGT 59.095 50.000 0.00 0.00 0.00 4.00
233 234 1.278985 TGGATTCGTCATGAGCCTGTT 59.721 47.619 0.00 0.00 0.00 3.16
234 235 2.499693 TGGATTCGTCATGAGCCTGTTA 59.500 45.455 0.00 0.00 0.00 2.41
235 236 3.055458 TGGATTCGTCATGAGCCTGTTAA 60.055 43.478 0.00 0.00 0.00 2.01
236 237 3.557595 GGATTCGTCATGAGCCTGTTAAG 59.442 47.826 0.00 0.00 0.00 1.85
237 238 2.010145 TCGTCATGAGCCTGTTAAGC 57.990 50.000 0.00 0.00 0.00 3.09
238 239 1.550524 TCGTCATGAGCCTGTTAAGCT 59.449 47.619 0.00 0.00 45.23 3.74
243 244 3.068881 AGCCTGTTAAGCTCCGCA 58.931 55.556 0.00 0.00 34.91 5.69
244 245 1.604378 AGCCTGTTAAGCTCCGCAT 59.396 52.632 0.00 0.00 34.91 4.73
245 246 0.462759 AGCCTGTTAAGCTCCGCATC 60.463 55.000 0.00 0.00 34.91 3.91
246 247 0.744414 GCCTGTTAAGCTCCGCATCA 60.744 55.000 0.00 0.00 0.00 3.07
247 248 1.737838 CCTGTTAAGCTCCGCATCAA 58.262 50.000 0.00 0.00 0.00 2.57
248 249 1.667724 CCTGTTAAGCTCCGCATCAAG 59.332 52.381 0.00 0.00 0.00 3.02
249 250 2.621338 CTGTTAAGCTCCGCATCAAGA 58.379 47.619 0.00 0.00 0.00 3.02
250 251 2.606725 CTGTTAAGCTCCGCATCAAGAG 59.393 50.000 0.00 0.00 0.00 2.85
254 255 4.623814 CTCCGCATCAAGAGCCAA 57.376 55.556 0.00 0.00 0.00 4.52
255 256 3.091318 CTCCGCATCAAGAGCCAAT 57.909 52.632 0.00 0.00 0.00 3.16
256 257 0.661552 CTCCGCATCAAGAGCCAATG 59.338 55.000 0.00 0.00 0.00 2.82
257 258 0.749091 TCCGCATCAAGAGCCAATGG 60.749 55.000 0.00 0.00 0.00 3.16
258 259 1.731433 CCGCATCAAGAGCCAATGGG 61.731 60.000 0.00 0.00 34.24 4.00
259 260 1.731433 CGCATCAAGAGCCAATGGGG 61.731 60.000 0.00 0.00 40.85 4.96
260 261 1.397390 GCATCAAGAGCCAATGGGGG 61.397 60.000 0.00 0.00 37.04 5.40
261 262 0.259647 CATCAAGAGCCAATGGGGGA 59.740 55.000 0.00 0.00 37.04 4.81
262 263 1.009997 ATCAAGAGCCAATGGGGGAA 58.990 50.000 0.00 0.00 37.04 3.97
263 264 0.039618 TCAAGAGCCAATGGGGGAAC 59.960 55.000 0.00 0.00 37.04 3.62
264 265 0.251742 CAAGAGCCAATGGGGGAACA 60.252 55.000 0.00 0.00 37.04 3.18
265 266 0.251787 AAGAGCCAATGGGGGAACAC 60.252 55.000 0.00 0.00 37.04 3.32
266 267 1.682344 GAGCCAATGGGGGAACACC 60.682 63.158 0.00 0.00 37.04 4.16
267 268 2.119391 GCCAATGGGGGAACACCA 59.881 61.111 0.00 0.00 42.91 4.17
268 269 2.282783 GCCAATGGGGGAACACCAC 61.283 63.158 0.00 0.00 45.74 4.16
269 270 1.464722 CCAATGGGGGAACACCACT 59.535 57.895 0.00 0.00 45.72 4.00
270 271 0.701731 CCAATGGGGGAACACCACTA 59.298 55.000 0.00 0.00 45.72 2.74
271 272 1.615919 CCAATGGGGGAACACCACTAC 60.616 57.143 0.00 0.00 45.72 2.73
272 273 0.702316 AATGGGGGAACACCACTACC 59.298 55.000 0.00 0.00 45.72 3.18
273 274 0.476808 ATGGGGGAACACCACTACCA 60.477 55.000 0.00 0.00 45.72 3.25
274 275 1.131303 TGGGGGAACACCACTACCAG 61.131 60.000 0.00 0.00 45.72 4.00
275 276 1.131928 GGGGGAACACCACTACCAGT 61.132 60.000 0.00 0.00 40.60 4.00
276 277 0.769247 GGGGAACACCACTACCAGTT 59.231 55.000 0.00 0.00 42.91 3.16
277 278 1.271217 GGGGAACACCACTACCAGTTC 60.271 57.143 0.00 0.00 42.91 3.01
278 279 1.697982 GGGAACACCACTACCAGTTCT 59.302 52.381 0.00 0.00 40.05 3.01
279 280 2.550208 GGGAACACCACTACCAGTTCTG 60.550 54.545 0.00 0.00 40.05 3.02
280 281 2.367567 GGAACACCACTACCAGTTCTGA 59.632 50.000 1.00 0.00 40.05 3.27
281 282 3.555168 GGAACACCACTACCAGTTCTGAG 60.555 52.174 1.00 0.00 40.05 3.35
282 283 1.971357 ACACCACTACCAGTTCTGAGG 59.029 52.381 1.00 0.00 0.00 3.86
283 284 0.977395 ACCACTACCAGTTCTGAGGC 59.023 55.000 1.00 0.00 0.00 4.70
284 285 0.976641 CCACTACCAGTTCTGAGGCA 59.023 55.000 1.00 0.00 0.00 4.75
285 286 1.066573 CCACTACCAGTTCTGAGGCAG 60.067 57.143 1.00 0.00 0.00 4.85
286 287 1.895798 CACTACCAGTTCTGAGGCAGA 59.104 52.381 1.00 0.00 38.87 4.26
287 288 2.094286 CACTACCAGTTCTGAGGCAGAG 60.094 54.545 1.00 0.00 41.75 3.35
288 289 1.480137 CTACCAGTTCTGAGGCAGAGG 59.520 57.143 1.00 0.00 41.75 3.69
289 290 1.078567 CCAGTTCTGAGGCAGAGGC 60.079 63.158 1.00 0.00 41.75 4.70
290 291 1.551908 CCAGTTCTGAGGCAGAGGCT 61.552 60.000 1.00 0.00 41.75 4.58
291 292 0.391395 CAGTTCTGAGGCAGAGGCTG 60.391 60.000 0.00 12.90 41.75 4.85
300 301 3.510846 CAGAGGCTGCCAAGATGC 58.489 61.111 22.65 2.64 0.00 3.91
301 302 1.378119 CAGAGGCTGCCAAGATGCA 60.378 57.895 22.65 0.00 39.37 3.96
302 303 0.752009 CAGAGGCTGCCAAGATGCAT 60.752 55.000 22.65 0.00 41.16 3.96
303 304 0.752009 AGAGGCTGCCAAGATGCATG 60.752 55.000 22.65 0.00 41.16 4.06
304 305 2.106332 GGCTGCCAAGATGCATGC 59.894 61.111 15.17 11.82 41.16 4.06
305 306 2.278596 GCTGCCAAGATGCATGCG 60.279 61.111 14.09 0.00 41.16 4.73
306 307 2.411701 CTGCCAAGATGCATGCGG 59.588 61.111 14.09 8.76 41.16 5.69
307 308 2.045143 TGCCAAGATGCATGCGGA 60.045 55.556 14.09 0.00 36.04 5.54
308 309 1.452953 CTGCCAAGATGCATGCGGAT 61.453 55.000 14.09 0.91 41.16 4.18
309 310 1.007734 GCCAAGATGCATGCGGATG 60.008 57.895 13.21 13.21 0.00 3.51
310 311 1.449726 GCCAAGATGCATGCGGATGA 61.450 55.000 22.14 6.31 0.00 2.92
311 312 0.591659 CCAAGATGCATGCGGATGAG 59.408 55.000 22.14 0.00 0.00 2.90
312 313 0.591659 CAAGATGCATGCGGATGAGG 59.408 55.000 22.14 0.00 0.00 3.86
313 314 0.471191 AAGATGCATGCGGATGAGGA 59.529 50.000 22.14 3.57 0.00 3.71
314 315 0.691332 AGATGCATGCGGATGAGGAT 59.309 50.000 22.14 8.57 0.00 3.24
315 316 0.803117 GATGCATGCGGATGAGGATG 59.197 55.000 22.14 0.00 41.93 3.51
316 317 0.399075 ATGCATGCGGATGAGGATGA 59.601 50.000 22.14 0.00 41.63 2.92
317 318 0.250166 TGCATGCGGATGAGGATGAG 60.250 55.000 22.14 0.00 41.63 2.90
318 319 0.034476 GCATGCGGATGAGGATGAGA 59.966 55.000 22.14 0.00 41.63 3.27
319 320 1.338864 GCATGCGGATGAGGATGAGAT 60.339 52.381 22.14 0.00 41.63 2.75
320 321 2.619147 CATGCGGATGAGGATGAGATC 58.381 52.381 12.09 0.00 41.63 2.75
321 322 0.600057 TGCGGATGAGGATGAGATCG 59.400 55.000 0.00 0.00 0.00 3.69
322 323 0.884514 GCGGATGAGGATGAGATCGA 59.115 55.000 0.00 0.00 0.00 3.59
323 324 1.135431 GCGGATGAGGATGAGATCGAG 60.135 57.143 0.00 0.00 0.00 4.04
324 325 1.472082 CGGATGAGGATGAGATCGAGG 59.528 57.143 0.00 0.00 0.00 4.63
325 326 2.801483 GGATGAGGATGAGATCGAGGA 58.199 52.381 0.00 0.00 0.00 3.71
326 327 2.754552 GGATGAGGATGAGATCGAGGAG 59.245 54.545 0.00 0.00 0.00 3.69
327 328 2.284754 TGAGGATGAGATCGAGGAGG 57.715 55.000 0.00 0.00 0.00 4.30
328 329 1.777272 TGAGGATGAGATCGAGGAGGA 59.223 52.381 0.00 0.00 0.00 3.71
329 330 2.224744 TGAGGATGAGATCGAGGAGGAG 60.225 54.545 0.00 0.00 0.00 3.69
330 331 1.075374 AGGATGAGATCGAGGAGGAGG 59.925 57.143 0.00 0.00 0.00 4.30
331 332 0.887933 GATGAGATCGAGGAGGAGGC 59.112 60.000 0.00 0.00 0.00 4.70
332 333 0.893270 ATGAGATCGAGGAGGAGGCG 60.893 60.000 0.00 0.00 0.00 5.52
333 334 2.203422 AGATCGAGGAGGAGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
334 335 2.203365 GATCGAGGAGGAGGCGGA 60.203 66.667 0.00 0.00 0.00 5.54
335 336 1.605165 GATCGAGGAGGAGGCGGAT 60.605 63.158 0.00 0.00 0.00 4.18
336 337 1.152440 ATCGAGGAGGAGGCGGATT 60.152 57.895 0.00 0.00 0.00 3.01
337 338 0.112606 ATCGAGGAGGAGGCGGATTA 59.887 55.000 0.00 0.00 0.00 1.75
338 339 0.537600 TCGAGGAGGAGGCGGATTAG 60.538 60.000 0.00 0.00 0.00 1.73
339 340 1.528292 CGAGGAGGAGGCGGATTAGG 61.528 65.000 0.00 0.00 0.00 2.69
340 341 0.178958 GAGGAGGAGGCGGATTAGGA 60.179 60.000 0.00 0.00 0.00 2.94
341 342 0.470268 AGGAGGAGGCGGATTAGGAC 60.470 60.000 0.00 0.00 0.00 3.85
342 343 0.759436 GGAGGAGGCGGATTAGGACA 60.759 60.000 0.00 0.00 0.00 4.02
343 344 1.120530 GAGGAGGCGGATTAGGACAA 58.879 55.000 0.00 0.00 0.00 3.18
344 345 0.831307 AGGAGGCGGATTAGGACAAC 59.169 55.000 0.00 0.00 0.00 3.32
345 346 0.831307 GGAGGCGGATTAGGACAACT 59.169 55.000 0.00 0.00 0.00 3.16
346 347 1.202545 GGAGGCGGATTAGGACAACTC 60.203 57.143 0.00 0.00 0.00 3.01
347 348 1.757699 GAGGCGGATTAGGACAACTCT 59.242 52.381 0.00 0.00 0.00 3.24
348 349 1.482593 AGGCGGATTAGGACAACTCTG 59.517 52.381 0.00 0.00 0.00 3.35
349 350 1.480954 GGCGGATTAGGACAACTCTGA 59.519 52.381 0.00 0.00 0.00 3.27
350 351 2.103263 GGCGGATTAGGACAACTCTGAT 59.897 50.000 0.00 0.00 0.00 2.90
351 352 3.126831 GCGGATTAGGACAACTCTGATG 58.873 50.000 0.00 0.00 0.00 3.07
352 353 3.722147 CGGATTAGGACAACTCTGATGG 58.278 50.000 0.00 0.00 0.00 3.51
353 354 3.384789 CGGATTAGGACAACTCTGATGGA 59.615 47.826 0.00 0.00 0.00 3.41
354 355 4.039730 CGGATTAGGACAACTCTGATGGAT 59.960 45.833 0.00 0.00 0.00 3.41
355 356 5.243954 CGGATTAGGACAACTCTGATGGATA 59.756 44.000 0.00 0.00 0.00 2.59
356 357 6.459923 GGATTAGGACAACTCTGATGGATAC 58.540 44.000 0.00 0.00 0.00 2.24
370 371 3.596940 TGGATACACTCCTCCCTCTAC 57.403 52.381 0.00 0.00 46.17 2.59
371 372 3.132056 TGGATACACTCCTCCCTCTACT 58.868 50.000 0.00 0.00 46.17 2.57
372 373 3.117474 TGGATACACTCCTCCCTCTACTG 60.117 52.174 0.00 0.00 46.17 2.74
373 374 3.138653 GGATACACTCCTCCCTCTACTGA 59.861 52.174 0.00 0.00 41.29 3.41
374 375 2.818751 ACACTCCTCCCTCTACTGAG 57.181 55.000 0.00 0.00 39.92 3.35
375 376 1.341581 ACACTCCTCCCTCTACTGAGC 60.342 57.143 0.00 0.00 38.93 4.26
376 377 0.260523 ACTCCTCCCTCTACTGAGCC 59.739 60.000 0.00 0.00 38.93 4.70
377 378 0.469144 CTCCTCCCTCTACTGAGCCC 60.469 65.000 0.00 0.00 38.93 5.19
378 379 0.926720 TCCTCCCTCTACTGAGCCCT 60.927 60.000 0.00 0.00 38.93 5.19
379 380 0.469144 CCTCCCTCTACTGAGCCCTC 60.469 65.000 0.00 0.00 38.93 4.30
380 381 0.260230 CTCCCTCTACTGAGCCCTCA 59.740 60.000 0.00 0.00 38.93 3.86
381 382 0.937441 TCCCTCTACTGAGCCCTCAT 59.063 55.000 0.00 0.00 39.13 2.90
382 383 1.047002 CCCTCTACTGAGCCCTCATG 58.953 60.000 0.00 0.00 39.13 3.07
383 384 1.047002 CCTCTACTGAGCCCTCATGG 58.953 60.000 0.00 0.00 39.13 3.66
405 406 3.931578 GCTAAGAAGCTGAAGACCAAGA 58.068 45.455 0.00 0.00 45.85 3.02
406 407 4.512484 GCTAAGAAGCTGAAGACCAAGAT 58.488 43.478 0.00 0.00 45.85 2.40
407 408 4.332268 GCTAAGAAGCTGAAGACCAAGATG 59.668 45.833 0.00 0.00 45.85 2.90
408 409 4.630644 AAGAAGCTGAAGACCAAGATGA 57.369 40.909 0.00 0.00 0.00 2.92
409 410 4.630644 AGAAGCTGAAGACCAAGATGAA 57.369 40.909 0.00 0.00 0.00 2.57
410 411 4.577875 AGAAGCTGAAGACCAAGATGAAG 58.422 43.478 0.00 0.00 0.00 3.02
411 412 4.285517 AGAAGCTGAAGACCAAGATGAAGA 59.714 41.667 0.00 0.00 0.00 2.87
412 413 4.630644 AGCTGAAGACCAAGATGAAGAA 57.369 40.909 0.00 0.00 0.00 2.52
413 414 4.577875 AGCTGAAGACCAAGATGAAGAAG 58.422 43.478 0.00 0.00 0.00 2.85
414 415 3.126686 GCTGAAGACCAAGATGAAGAAGC 59.873 47.826 0.00 0.00 0.00 3.86
415 416 4.577875 CTGAAGACCAAGATGAAGAAGCT 58.422 43.478 0.00 0.00 0.00 3.74
416 417 5.728471 CTGAAGACCAAGATGAAGAAGCTA 58.272 41.667 0.00 0.00 0.00 3.32
417 418 6.305272 TGAAGACCAAGATGAAGAAGCTAT 57.695 37.500 0.00 0.00 0.00 2.97
418 419 6.715280 TGAAGACCAAGATGAAGAAGCTATT 58.285 36.000 0.00 0.00 0.00 1.73
419 420 6.820656 TGAAGACCAAGATGAAGAAGCTATTC 59.179 38.462 4.94 4.94 35.52 1.75
421 422 6.347696 AGACCAAGATGAAGAAGCTATTCTG 58.652 40.000 11.63 3.47 45.25 3.02
422 423 4.880696 ACCAAGATGAAGAAGCTATTCTGC 59.119 41.667 11.63 0.38 45.25 4.26
427 428 3.613030 TGAAGAAGCTATTCTGCATGCA 58.387 40.909 21.29 21.29 44.77 3.96
428 429 3.626217 TGAAGAAGCTATTCTGCATGCAG 59.374 43.478 36.80 36.80 44.77 4.41
429 430 2.573369 AGAAGCTATTCTGCATGCAGG 58.427 47.619 39.72 27.26 44.28 4.85
435 436 3.851470 TATTCTGCATGCAGGCCCTCG 62.851 57.143 39.72 19.50 43.75 4.63
448 450 1.383523 GCCCTCGAGAATCCCAAAAG 58.616 55.000 15.71 0.00 0.00 2.27
554 556 3.860641 TCAAGCGTGCATATTTCTCTCA 58.139 40.909 0.00 0.00 0.00 3.27
564 566 7.653713 CGTGCATATTTCTCTCAAATAGTACCT 59.346 37.037 0.00 0.00 0.00 3.08
715 719 8.903820 AGCAATAATTGAAAAGTCCTATACCAC 58.096 33.333 0.00 0.00 0.00 4.16
735 739 3.637273 AGGTTCTGGGGTGCCGAC 61.637 66.667 0.00 0.00 0.00 4.79
754 759 6.821160 TGCCGACAATGATTATTCAGTTTCTA 59.179 34.615 0.00 0.00 34.73 2.10
787 792 7.450074 TGTAGTTGTACCTTCAGTTTCATCAT 58.550 34.615 0.00 0.00 0.00 2.45
794 819 3.950395 CCTTCAGTTTCATCATTCCCTCC 59.050 47.826 0.00 0.00 0.00 4.30
874 899 6.261435 ACATCTTATATTATGGGACGGAGGA 58.739 40.000 0.00 0.00 0.00 3.71
892 919 7.096551 ACGGAGGAAATACCATTTTGAAAATG 58.903 34.615 20.66 20.66 42.04 2.32
960 987 9.679661 TGGAGAAATAGCATGTCAAGTTAATTA 57.320 29.630 0.00 0.00 0.00 1.40
1040 1067 5.695851 ACATGAGTAAACTTGAAGCTTGG 57.304 39.130 2.10 0.00 0.00 3.61
1064 1091 2.798976 TTTGCACTTTGTCAGGCATC 57.201 45.000 0.00 0.00 35.98 3.91
1082 1109 0.522626 TCGCTGCCATGATTGTTGTG 59.477 50.000 0.00 0.00 0.00 3.33
1091 1118 3.822735 CCATGATTGTTGTGTCTGTCCTT 59.177 43.478 0.00 0.00 0.00 3.36
1115 1142 3.054434 TGGTTATGGTCCATCAACTCCTG 60.054 47.826 7.92 0.00 0.00 3.86
1136 1163 8.340618 TCCTGAAATTCAAAAGGTTCTATGAG 57.659 34.615 0.00 0.00 0.00 2.90
1137 1164 8.163408 TCCTGAAATTCAAAAGGTTCTATGAGA 58.837 33.333 0.00 0.00 0.00 3.27
1151 1178 5.710099 GTTCTATGAGAAAAATGGTGGTCCA 59.290 40.000 0.00 0.00 41.08 4.02
1241 1268 1.568504 AGCGTGTAATTGGAGAGGGA 58.431 50.000 0.00 0.00 0.00 4.20
1274 1301 3.777522 AGGTTTATCTGGGGACTCTCAAG 59.222 47.826 0.00 0.00 0.00 3.02
1314 1343 8.278639 TGGCTATAAAGAAATCCATCAAGGTTA 58.721 33.333 0.00 0.00 39.02 2.85
1328 1357 5.843673 TCAAGGTTAACAAGCACATGAAA 57.156 34.783 8.10 0.00 0.00 2.69
1406 1436 0.746923 TGCTCATAGGCTGCTGCTTG 60.747 55.000 15.64 10.68 39.59 4.01
1441 1471 3.367292 CCCATGTTGGTGTATGAGTTTGC 60.367 47.826 0.00 0.00 35.17 3.68
1578 1608 1.202651 GGGAGGGTACAATCCGTCATG 60.203 57.143 8.93 0.00 42.16 3.07
1579 1609 1.202651 GGAGGGTACAATCCGTCATGG 60.203 57.143 0.00 0.00 42.16 3.66
1580 1610 1.485066 GAGGGTACAATCCGTCATGGT 59.515 52.381 0.00 0.00 40.69 3.55
1581 1611 1.209504 AGGGTACAATCCGTCATGGTG 59.790 52.381 0.00 0.00 39.52 4.17
1582 1612 1.208535 GGGTACAATCCGTCATGGTGA 59.791 52.381 0.00 0.00 39.52 4.02
1583 1613 2.277084 GGTACAATCCGTCATGGTGAC 58.723 52.381 0.00 0.07 43.65 3.67
1595 1625 1.453155 ATGGTGACGTGAAATCTGCC 58.547 50.000 0.00 0.00 0.00 4.85
1596 1626 0.107643 TGGTGACGTGAAATCTGCCA 59.892 50.000 0.00 0.00 0.00 4.92
1597 1627 1.234821 GGTGACGTGAAATCTGCCAA 58.765 50.000 0.00 0.00 0.00 4.52
1598 1628 1.069227 GGTGACGTGAAATCTGCCAAC 60.069 52.381 0.00 0.00 0.00 3.77
1599 1629 1.601903 GTGACGTGAAATCTGCCAACA 59.398 47.619 0.00 0.00 0.00 3.33
1600 1630 2.226437 GTGACGTGAAATCTGCCAACAT 59.774 45.455 0.00 0.00 0.00 2.71
1601 1631 2.483877 TGACGTGAAATCTGCCAACATC 59.516 45.455 0.00 0.00 0.00 3.06
1602 1632 1.464608 ACGTGAAATCTGCCAACATCG 59.535 47.619 0.00 0.00 0.00 3.84
1603 1633 1.464608 CGTGAAATCTGCCAACATCGT 59.535 47.619 0.00 0.00 0.00 3.73
1604 1634 2.095768 CGTGAAATCTGCCAACATCGTT 60.096 45.455 0.00 0.00 0.00 3.85
1605 1635 3.492313 GTGAAATCTGCCAACATCGTTC 58.508 45.455 0.00 0.00 0.00 3.95
1606 1636 3.189287 GTGAAATCTGCCAACATCGTTCT 59.811 43.478 0.00 0.00 0.00 3.01
1607 1637 3.436704 TGAAATCTGCCAACATCGTTCTC 59.563 43.478 0.00 0.00 0.00 2.87
1608 1638 1.645034 ATCTGCCAACATCGTTCTCG 58.355 50.000 0.00 0.00 38.55 4.04
1622 1652 5.834239 TCGTTCTCGATAAAAAGTTCACC 57.166 39.130 0.00 0.00 41.35 4.02
1623 1653 4.687483 TCGTTCTCGATAAAAAGTTCACCC 59.313 41.667 0.00 0.00 41.35 4.61
1624 1654 4.142966 CGTTCTCGATAAAAAGTTCACCCC 60.143 45.833 0.00 0.00 39.71 4.95
1625 1655 4.627284 TCTCGATAAAAAGTTCACCCCA 57.373 40.909 0.00 0.00 0.00 4.96
1626 1656 4.975631 TCTCGATAAAAAGTTCACCCCAA 58.024 39.130 0.00 0.00 0.00 4.12
1627 1657 5.378332 TCTCGATAAAAAGTTCACCCCAAA 58.622 37.500 0.00 0.00 0.00 3.28
1713 1793 4.411869 TCATTGGGGACATGAGCTACATAA 59.588 41.667 0.00 0.00 42.32 1.90
1719 1799 4.262463 GGGACATGAGCTACATAAATCCGA 60.262 45.833 0.00 0.00 37.46 4.55
1766 1846 3.027412 ACAGAAGAGCGATGTCTATGGT 58.973 45.455 0.00 0.00 0.00 3.55
1931 2011 5.872070 GGATATCGATCTCTTGGAAATGGTC 59.128 44.000 0.00 0.00 32.15 4.02
1941 2021 0.038166 GGAAATGGTCAGCAGGGTCA 59.962 55.000 0.00 0.00 0.00 4.02
1955 2035 0.673644 GGGTCACCGTGGATTGTCTG 60.674 60.000 0.00 0.00 0.00 3.51
1969 2049 0.329261 TGTCTGAAGCCCAATCCAGG 59.671 55.000 0.00 0.00 0.00 4.45
2024 2104 2.625737 CTCCTCGAGATTGTTGCACAT 58.374 47.619 15.71 0.00 0.00 3.21
2121 2205 3.964031 AGCCTTCGGAGAATGAAGTATCT 59.036 43.478 0.00 0.00 45.90 1.98
2191 2279 4.064388 TCATTGCGTTGAGACATCAAGAA 58.936 39.130 0.00 0.00 45.96 2.52
2192 2280 4.152938 TCATTGCGTTGAGACATCAAGAAG 59.847 41.667 0.00 0.00 45.96 2.85
2264 2352 9.613428 CAGGAAATGTAGGATCTAATTGTTGTA 57.387 33.333 0.00 0.00 0.00 2.41
2266 2354 9.057089 GGAAATGTAGGATCTAATTGTTGTAGG 57.943 37.037 0.00 0.00 0.00 3.18
2356 2448 4.326548 GTCACTCCCTTCTCGAAAAATACG 59.673 45.833 0.00 0.00 0.00 3.06
2365 2457 1.122859 TCGAAAAATACGCACACGACG 59.877 47.619 0.00 0.00 43.93 5.12
2377 2522 2.251040 CACACGACGTCTCCATGTTAG 58.749 52.381 14.70 0.00 0.00 2.34
2419 2578 4.357918 GCTGAGGCTTAATTAGGATCCA 57.642 45.455 15.82 0.00 35.22 3.41
2423 2582 5.624159 TGAGGCTTAATTAGGATCCACATG 58.376 41.667 15.82 0.00 0.00 3.21
2449 2608 5.055642 TGAGTTGTTCTACTATGGACACG 57.944 43.478 0.00 0.00 0.00 4.49
2458 2617 5.443283 TCTACTATGGACACGGTATGTTCT 58.557 41.667 0.00 0.00 43.56 3.01
2460 2619 5.416271 ACTATGGACACGGTATGTTCTTT 57.584 39.130 0.00 0.00 43.56 2.52
2462 2621 5.873164 ACTATGGACACGGTATGTTCTTTTC 59.127 40.000 0.00 0.00 43.56 2.29
2464 2623 4.312443 TGGACACGGTATGTTCTTTTCTC 58.688 43.478 0.00 0.00 43.56 2.87
2465 2624 3.367025 GGACACGGTATGTTCTTTTCTCG 59.633 47.826 0.00 0.00 43.56 4.04
2485 2645 7.692460 TCTCGTAGTAAATACTCCAAAGACA 57.308 36.000 0.00 0.00 37.73 3.41
2486 2646 8.114331 TCTCGTAGTAAATACTCCAAAGACAA 57.886 34.615 0.00 0.00 37.73 3.18
2487 2647 8.025445 TCTCGTAGTAAATACTCCAAAGACAAC 58.975 37.037 0.00 0.00 37.73 3.32
2501 2661 5.220989 CCAAAGACAACATGCCTCATATGAG 60.221 44.000 23.53 23.53 41.71 2.90
2506 2666 4.346127 ACAACATGCCTCATATGAGCTCTA 59.654 41.667 24.81 11.80 40.75 2.43
2507 2667 5.163269 ACAACATGCCTCATATGAGCTCTAA 60.163 40.000 24.81 9.66 40.75 2.10
2509 2669 6.124316 ACATGCCTCATATGAGCTCTAATT 57.876 37.500 24.81 4.77 40.75 1.40
2560 2724 3.819564 TGGAATAATGGACTCCACTCG 57.180 47.619 0.00 0.00 35.80 4.18
2561 2725 2.158957 TGGAATAATGGACTCCACTCGC 60.159 50.000 0.00 0.00 35.80 5.03
2566 2730 0.904865 ATGGACTCCACTCGCCTCAA 60.905 55.000 0.00 0.00 35.80 3.02
2575 2739 2.554032 CCACTCGCCTCAAAAGTGAATT 59.446 45.455 3.42 0.00 42.37 2.17
2597 2761 8.959734 AATTTTAGTTTCTCCCGAAATTTACG 57.040 30.769 0.00 0.00 40.91 3.18
2599 2763 7.495135 TTTAGTTTCTCCCGAAATTTACGTT 57.505 32.000 0.00 0.00 40.91 3.99
2611 2775 6.410914 CCGAAATTTACGTTGATTATCTGCAC 59.589 38.462 0.00 0.00 0.00 4.57
2640 2804 0.327924 TGCCCCATGTAGACACCAAG 59.672 55.000 0.00 0.00 0.00 3.61
2687 2851 9.534565 CAATCCTAAGATGTAGAAATCTTTCGA 57.465 33.333 4.88 2.53 42.92 3.71
2743 2907 6.917477 TGCTTGATTTAATTTCGATACATGGC 59.083 34.615 0.00 0.00 0.00 4.40
2744 2908 6.917477 GCTTGATTTAATTTCGATACATGGCA 59.083 34.615 0.00 0.00 0.00 4.92
2745 2909 7.434897 GCTTGATTTAATTTCGATACATGGCAA 59.565 33.333 0.00 0.00 0.00 4.52
2746 2910 9.467258 CTTGATTTAATTTCGATACATGGCAAT 57.533 29.630 0.00 0.00 0.00 3.56
2747 2911 8.800231 TGATTTAATTTCGATACATGGCAATG 57.200 30.769 0.00 0.00 39.89 2.82
2767 2931 9.221775 GGCAATGTAAGAATATAAAACTTGTCG 57.778 33.333 0.00 0.00 0.00 4.35
2768 2932 9.769093 GCAATGTAAGAATATAAAACTTGTCGT 57.231 29.630 0.00 0.00 0.00 4.34
2781 2945 9.769093 ATAAAACTTGTCGTTGTCTATTAATGC 57.231 29.630 0.00 0.00 35.61 3.56
2782 2946 6.795098 AACTTGTCGTTGTCTATTAATGCA 57.205 33.333 0.00 0.00 33.72 3.96
2783 2947 6.985188 ACTTGTCGTTGTCTATTAATGCAT 57.015 33.333 0.00 0.00 0.00 3.96
2784 2948 6.775088 ACTTGTCGTTGTCTATTAATGCATG 58.225 36.000 0.00 0.00 0.00 4.06
2785 2949 6.593770 ACTTGTCGTTGTCTATTAATGCATGA 59.406 34.615 0.00 0.00 0.00 3.07
2801 2965 3.443329 TGCATGAAGACTTTGTGTGTGTT 59.557 39.130 0.00 0.00 0.00 3.32
2802 2966 3.792956 GCATGAAGACTTTGTGTGTGTTG 59.207 43.478 0.00 0.00 0.00 3.33
2803 2967 3.485947 TGAAGACTTTGTGTGTGTTGC 57.514 42.857 0.00 0.00 0.00 4.17
2858 3024 9.325198 GGAAACATGATGATTGTACTATGTGTA 57.675 33.333 0.00 0.00 0.00 2.90
2861 3027 8.893219 ACATGATGATTGTACTATGTGTAAGG 57.107 34.615 0.00 0.00 32.25 2.69
2862 3028 7.933577 ACATGATGATTGTACTATGTGTAAGGG 59.066 37.037 0.00 0.00 32.25 3.95
2893 3059 4.893524 ACTGTTCCGATGATAGTCATGGTA 59.106 41.667 0.00 0.00 37.20 3.25
2894 3060 5.540337 ACTGTTCCGATGATAGTCATGGTAT 59.460 40.000 0.00 0.00 37.20 2.73
2895 3061 5.783111 TGTTCCGATGATAGTCATGGTATG 58.217 41.667 0.00 0.00 37.20 2.39
2896 3062 5.171476 GTTCCGATGATAGTCATGGTATGG 58.829 45.833 0.00 0.00 37.20 2.74
2897 3063 4.416516 TCCGATGATAGTCATGGTATGGT 58.583 43.478 0.00 0.00 37.20 3.55
2898 3064 4.838423 TCCGATGATAGTCATGGTATGGTT 59.162 41.667 0.00 0.00 37.20 3.67
2899 3065 5.047306 TCCGATGATAGTCATGGTATGGTTC 60.047 44.000 0.00 0.00 37.20 3.62
2900 3066 5.171476 CGATGATAGTCATGGTATGGTTCC 58.829 45.833 0.00 0.00 37.20 3.62
2901 3067 5.047021 CGATGATAGTCATGGTATGGTTCCT 60.047 44.000 0.00 0.00 37.20 3.36
2902 3068 5.551305 TGATAGTCATGGTATGGTTCCTG 57.449 43.478 0.00 0.00 0.00 3.86
2903 3069 4.347876 TGATAGTCATGGTATGGTTCCTGG 59.652 45.833 0.00 0.00 0.00 4.45
2904 3070 2.562296 AGTCATGGTATGGTTCCTGGT 58.438 47.619 0.00 0.00 0.00 4.00
2905 3071 3.731431 AGTCATGGTATGGTTCCTGGTA 58.269 45.455 0.00 0.00 0.00 3.25
2921 3087 2.355756 CTGGTATGGAATCGTTTGCAGG 59.644 50.000 6.57 0.00 36.56 4.85
2939 3105 6.279513 TGCAGGTAATTTGAGGGTAAAATG 57.720 37.500 0.00 0.00 0.00 2.32
2994 3160 9.624373 AGAGCAGAATCAAGTTATTATGATGTT 57.376 29.630 0.00 0.00 36.44 2.71
3004 3177 9.573133 CAAGTTATTATGATGTTTCCAAAGACC 57.427 33.333 0.00 0.00 0.00 3.85
3126 3360 2.798689 CGATCGCCGGAGAAGTGA 59.201 61.111 13.28 0.00 33.91 3.41
3127 3361 1.138883 CGATCGCCGGAGAAGTGAA 59.861 57.895 13.28 0.00 33.91 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.921896 ACCAGATAGGCATGCACCTT 59.078 50.000 21.36 4.24 43.14 3.50
1 2 0.182061 CACCAGATAGGCATGCACCT 59.818 55.000 21.36 10.94 43.14 4.00
2 3 0.820891 CCACCAGATAGGCATGCACC 60.821 60.000 21.36 2.42 43.14 5.01
3 4 0.181114 TCCACCAGATAGGCATGCAC 59.819 55.000 21.36 9.10 43.14 4.57
4 5 1.142936 ATCCACCAGATAGGCATGCA 58.857 50.000 21.36 0.00 43.14 3.96
5 6 3.054875 TCATATCCACCAGATAGGCATGC 60.055 47.826 9.90 9.90 40.82 4.06
6 7 4.831674 TCATATCCACCAGATAGGCATG 57.168 45.455 0.00 0.00 40.82 4.06
7 8 4.384978 GCATCATATCCACCAGATAGGCAT 60.385 45.833 0.00 0.00 40.82 4.40
8 9 3.054875 GCATCATATCCACCAGATAGGCA 60.055 47.826 0.00 0.00 40.82 4.75
9 10 3.199508 AGCATCATATCCACCAGATAGGC 59.800 47.826 0.00 0.00 40.82 3.93
10 11 4.468868 TGAGCATCATATCCACCAGATAGG 59.531 45.833 0.00 0.00 42.56 2.57
11 12 5.672421 TGAGCATCATATCCACCAGATAG 57.328 43.478 0.00 0.00 42.56 2.08
31 32 0.249699 ACACGCGTCCTCACAAATGA 60.250 50.000 9.86 0.00 0.00 2.57
32 33 0.163788 GACACGCGTCCTCACAAATG 59.836 55.000 9.86 0.00 36.02 2.32
33 34 0.249699 TGACACGCGTCCTCACAAAT 60.250 50.000 9.86 0.00 41.85 2.32
34 35 0.249699 ATGACACGCGTCCTCACAAA 60.250 50.000 9.86 0.00 41.85 2.83
35 36 0.943835 CATGACACGCGTCCTCACAA 60.944 55.000 9.86 0.00 41.85 3.33
36 37 1.372872 CATGACACGCGTCCTCACA 60.373 57.895 9.86 5.77 41.85 3.58
37 38 2.730672 GCATGACACGCGTCCTCAC 61.731 63.158 9.86 0.00 41.85 3.51
38 39 2.432456 GCATGACACGCGTCCTCA 60.432 61.111 9.86 14.08 41.85 3.86
39 40 2.125912 AGCATGACACGCGTCCTC 60.126 61.111 9.86 7.75 41.85 3.71
40 41 2.125912 GAGCATGACACGCGTCCT 60.126 61.111 9.86 0.00 41.85 3.85
41 42 2.432456 TGAGCATGACACGCGTCC 60.432 61.111 9.86 4.75 41.85 4.79
42 43 1.444383 TCTGAGCATGACACGCGTC 60.444 57.895 9.86 0.00 42.93 5.19
43 44 1.734477 GTCTGAGCATGACACGCGT 60.734 57.895 5.58 5.58 0.00 6.01
44 45 2.782045 CGTCTGAGCATGACACGCG 61.782 63.158 3.53 3.53 0.00 6.01
45 46 3.075998 CGTCTGAGCATGACACGC 58.924 61.111 0.00 0.00 0.00 5.34
46 47 1.734117 TGCGTCTGAGCATGACACG 60.734 57.895 0.00 0.00 42.92 4.49
47 48 4.266983 TGCGTCTGAGCATGACAC 57.733 55.556 0.00 0.00 42.92 3.67
53 54 1.146041 AAGTGGTTGCGTCTGAGCA 59.854 52.632 0.00 0.00 46.54 4.26
54 55 0.880278 TCAAGTGGTTGCGTCTGAGC 60.880 55.000 0.00 0.00 33.23 4.26
55 56 1.462283 CATCAAGTGGTTGCGTCTGAG 59.538 52.381 0.00 0.00 33.23 3.35
56 57 1.202639 ACATCAAGTGGTTGCGTCTGA 60.203 47.619 0.00 0.00 33.23 3.27
57 58 1.195448 GACATCAAGTGGTTGCGTCTG 59.805 52.381 0.00 0.00 34.98 3.51
58 59 1.070758 AGACATCAAGTGGTTGCGTCT 59.929 47.619 0.00 0.00 39.46 4.18
59 60 1.461127 GAGACATCAAGTGGTTGCGTC 59.539 52.381 0.00 0.00 36.66 5.19
60 61 1.202639 TGAGACATCAAGTGGTTGCGT 60.203 47.619 0.00 0.00 33.23 5.24
61 62 1.195448 GTGAGACATCAAGTGGTTGCG 59.805 52.381 0.00 0.00 37.14 4.85
62 63 2.221169 TGTGAGACATCAAGTGGTTGC 58.779 47.619 0.00 0.00 37.14 4.17
63 64 6.748333 AATATGTGAGACATCAAGTGGTTG 57.252 37.500 0.00 0.00 39.88 3.77
64 65 7.012704 GCATAATATGTGAGACATCAAGTGGTT 59.987 37.037 1.92 0.00 39.88 3.67
65 66 6.484643 GCATAATATGTGAGACATCAAGTGGT 59.515 38.462 1.92 0.00 39.88 4.16
66 67 6.347160 CGCATAATATGTGAGACATCAAGTGG 60.347 42.308 8.01 0.00 43.24 4.00
67 68 6.347160 CCGCATAATATGTGAGACATCAAGTG 60.347 42.308 14.75 0.00 43.24 3.16
68 69 5.698089 CCGCATAATATGTGAGACATCAAGT 59.302 40.000 14.75 0.00 43.24 3.16
69 70 5.698089 ACCGCATAATATGTGAGACATCAAG 59.302 40.000 14.75 0.00 43.24 3.02
70 71 5.466393 CACCGCATAATATGTGAGACATCAA 59.534 40.000 14.75 0.00 43.24 2.57
71 72 4.990426 CACCGCATAATATGTGAGACATCA 59.010 41.667 14.75 0.00 43.24 3.07
72 73 4.143030 GCACCGCATAATATGTGAGACATC 60.143 45.833 14.75 0.00 43.24 3.06
73 74 3.748048 GCACCGCATAATATGTGAGACAT 59.252 43.478 14.75 0.00 43.24 3.06
74 75 3.130633 GCACCGCATAATATGTGAGACA 58.869 45.455 14.75 0.00 43.24 3.41
75 76 2.155732 CGCACCGCATAATATGTGAGAC 59.844 50.000 14.75 3.31 43.24 3.36
76 77 2.035321 TCGCACCGCATAATATGTGAGA 59.965 45.455 14.75 3.93 43.24 3.27
77 78 2.403259 TCGCACCGCATAATATGTGAG 58.597 47.619 14.75 8.26 43.24 3.51
78 79 2.403259 CTCGCACCGCATAATATGTGA 58.597 47.619 14.75 0.00 43.24 3.58
79 80 1.136252 GCTCGCACCGCATAATATGTG 60.136 52.381 6.82 6.82 40.37 3.21
80 81 1.148310 GCTCGCACCGCATAATATGT 58.852 50.000 1.92 0.00 0.00 2.29
81 82 1.432514 AGCTCGCACCGCATAATATG 58.567 50.000 0.00 0.00 0.00 1.78
82 83 2.069273 GAAGCTCGCACCGCATAATAT 58.931 47.619 0.00 0.00 0.00 1.28
83 84 1.202475 TGAAGCTCGCACCGCATAATA 60.202 47.619 0.00 0.00 0.00 0.98
84 85 0.461870 TGAAGCTCGCACCGCATAAT 60.462 50.000 0.00 0.00 0.00 1.28
85 86 0.672091 TTGAAGCTCGCACCGCATAA 60.672 50.000 0.00 0.00 0.00 1.90
86 87 0.461870 ATTGAAGCTCGCACCGCATA 60.462 50.000 0.00 0.00 0.00 3.14
87 88 1.308069 AATTGAAGCTCGCACCGCAT 61.308 50.000 0.00 0.00 0.00 4.73
88 89 1.514678 AAATTGAAGCTCGCACCGCA 61.515 50.000 0.00 0.00 0.00 5.69
89 90 1.067199 CAAATTGAAGCTCGCACCGC 61.067 55.000 0.00 0.00 0.00 5.68
90 91 1.067199 GCAAATTGAAGCTCGCACCG 61.067 55.000 0.00 0.00 0.00 4.94
91 92 1.067199 CGCAAATTGAAGCTCGCACC 61.067 55.000 0.00 0.00 0.00 5.01
92 93 1.067199 CCGCAAATTGAAGCTCGCAC 61.067 55.000 0.00 0.00 0.00 5.34
93 94 1.209898 CCGCAAATTGAAGCTCGCA 59.790 52.632 0.00 0.00 0.00 5.10
94 95 1.067199 CACCGCAAATTGAAGCTCGC 61.067 55.000 0.00 0.00 0.00 5.03
95 96 0.238289 ACACCGCAAATTGAAGCTCG 59.762 50.000 0.00 0.00 0.00 5.03
96 97 2.287547 TGAACACCGCAAATTGAAGCTC 60.288 45.455 0.00 0.00 0.00 4.09
97 98 1.680735 TGAACACCGCAAATTGAAGCT 59.319 42.857 0.00 0.00 0.00 3.74
98 99 2.132740 TGAACACCGCAAATTGAAGC 57.867 45.000 0.00 0.00 0.00 3.86
99 100 2.794350 GGTTGAACACCGCAAATTGAAG 59.206 45.455 0.00 0.00 35.12 3.02
100 101 2.815478 GGTTGAACACCGCAAATTGAA 58.185 42.857 0.00 0.00 35.12 2.69
101 102 2.500509 GGTTGAACACCGCAAATTGA 57.499 45.000 0.00 0.00 35.12 2.57
110 111 1.516161 GGACCTTACGGTTGAACACC 58.484 55.000 0.00 0.00 45.73 4.16
111 112 1.516161 GGGACCTTACGGTTGAACAC 58.484 55.000 0.00 0.00 45.73 3.32
131 132 3.864789 AACAGGTAAGGCCCATAGATG 57.135 47.619 0.00 0.00 38.26 2.90
132 133 4.047883 AGAAACAGGTAAGGCCCATAGAT 58.952 43.478 0.00 0.00 38.26 1.98
133 134 3.454812 GAGAAACAGGTAAGGCCCATAGA 59.545 47.826 0.00 0.00 38.26 1.98
134 135 3.456277 AGAGAAACAGGTAAGGCCCATAG 59.544 47.826 0.00 0.00 38.26 2.23
135 136 3.460825 AGAGAAACAGGTAAGGCCCATA 58.539 45.455 0.00 0.00 38.26 2.74
136 137 2.279173 AGAGAAACAGGTAAGGCCCAT 58.721 47.619 0.00 0.00 38.26 4.00
137 138 1.742308 AGAGAAACAGGTAAGGCCCA 58.258 50.000 0.00 0.00 38.26 5.36
138 139 2.039879 TCAAGAGAAACAGGTAAGGCCC 59.960 50.000 0.00 0.00 38.26 5.80
139 140 3.418684 TCAAGAGAAACAGGTAAGGCC 57.581 47.619 0.00 0.00 37.58 5.19
140 141 4.837972 AGATCAAGAGAAACAGGTAAGGC 58.162 43.478 0.00 0.00 0.00 4.35
141 142 5.046304 TGGAGATCAAGAGAAACAGGTAAGG 60.046 44.000 0.00 0.00 0.00 2.69
142 143 6.042638 TGGAGATCAAGAGAAACAGGTAAG 57.957 41.667 0.00 0.00 0.00 2.34
143 144 6.433847 TTGGAGATCAAGAGAAACAGGTAA 57.566 37.500 0.00 0.00 0.00 2.85
145 146 4.982241 TTGGAGATCAAGAGAAACAGGT 57.018 40.909 0.00 0.00 0.00 4.00
161 162 7.813495 GAAGAGCTTCTCCCAAGTCTTGGAG 62.813 52.000 29.91 23.04 43.49 3.86
162 163 6.080893 GAAGAGCTTCTCCCAAGTCTTGGA 62.081 50.000 29.91 16.05 43.49 3.53
163 164 3.867984 GAAGAGCTTCTCCCAAGTCTTGG 60.868 52.174 22.89 22.89 42.05 3.61
164 165 3.333804 GAAGAGCTTCTCCCAAGTCTTG 58.666 50.000 5.53 5.53 36.69 3.02
165 166 2.304470 GGAAGAGCTTCTCCCAAGTCTT 59.696 50.000 9.82 0.00 39.45 3.01
166 167 1.905894 GGAAGAGCTTCTCCCAAGTCT 59.094 52.381 9.82 0.00 39.45 3.24
167 168 1.065782 GGGAAGAGCTTCTCCCAAGTC 60.066 57.143 23.09 2.03 41.89 3.01
168 169 0.988063 GGGAAGAGCTTCTCCCAAGT 59.012 55.000 23.09 0.00 41.89 3.16
169 170 3.871701 GGGAAGAGCTTCTCCCAAG 57.128 57.895 23.09 0.00 41.89 3.61
174 175 2.421248 CCTCATTGGGGAAGAGCTTCTC 60.421 54.545 0.00 5.91 39.31 2.87
175 176 1.563410 CCTCATTGGGGAAGAGCTTCT 59.437 52.381 0.00 0.00 39.45 2.85
176 177 1.561542 TCCTCATTGGGGAAGAGCTTC 59.438 52.381 1.69 1.62 35.21 3.86
177 178 1.563410 CTCCTCATTGGGGAAGAGCTT 59.437 52.381 6.74 0.00 39.16 3.74
178 179 1.211456 CTCCTCATTGGGGAAGAGCT 58.789 55.000 6.74 0.00 39.16 4.09
179 180 0.915364 ACTCCTCATTGGGGAAGAGC 59.085 55.000 6.74 0.00 39.16 4.09
180 181 3.245052 ACAAACTCCTCATTGGGGAAGAG 60.245 47.826 6.74 0.00 39.16 2.85
181 182 2.716424 ACAAACTCCTCATTGGGGAAGA 59.284 45.455 6.74 0.00 39.16 2.87
182 183 3.160679 ACAAACTCCTCATTGGGGAAG 57.839 47.619 6.74 3.81 39.16 3.46
183 184 3.230134 CAACAAACTCCTCATTGGGGAA 58.770 45.455 6.74 0.00 39.16 3.97
184 185 2.875296 CAACAAACTCCTCATTGGGGA 58.125 47.619 4.88 4.88 39.16 4.81
185 186 1.273327 GCAACAAACTCCTCATTGGGG 59.727 52.381 0.00 0.00 43.70 4.96
186 187 1.273327 GGCAACAAACTCCTCATTGGG 59.727 52.381 0.00 0.00 36.20 4.12
187 188 1.273327 GGGCAACAAACTCCTCATTGG 59.727 52.381 0.00 0.00 39.74 3.16
188 189 1.273327 GGGGCAACAAACTCCTCATTG 59.727 52.381 0.00 0.00 39.74 2.82
189 190 1.632589 GGGGCAACAAACTCCTCATT 58.367 50.000 0.00 0.00 39.74 2.57
190 191 0.251787 GGGGGCAACAAACTCCTCAT 60.252 55.000 0.00 0.00 39.74 2.90
191 192 1.152830 GGGGGCAACAAACTCCTCA 59.847 57.895 0.00 0.00 39.74 3.86
192 193 1.971695 CGGGGGCAACAAACTCCTC 60.972 63.158 0.00 0.00 39.74 3.71
193 194 2.115266 CGGGGGCAACAAACTCCT 59.885 61.111 0.00 0.00 39.74 3.69
194 195 2.989253 CCGGGGGCAACAAACTCC 60.989 66.667 0.00 0.00 39.74 3.85
205 206 4.547367 GACGAATCCAGCCGGGGG 62.547 72.222 2.18 0.00 37.22 5.40
206 207 3.106986 ATGACGAATCCAGCCGGGG 62.107 63.158 2.18 0.00 37.22 5.73
207 208 1.889105 CATGACGAATCCAGCCGGG 60.889 63.158 2.18 0.00 38.37 5.73
208 209 0.877649 CTCATGACGAATCCAGCCGG 60.878 60.000 0.00 0.00 0.00 6.13
209 210 1.493950 GCTCATGACGAATCCAGCCG 61.494 60.000 0.00 0.00 0.00 5.52
210 211 1.162800 GGCTCATGACGAATCCAGCC 61.163 60.000 2.95 2.95 39.75 4.85
211 212 0.179062 AGGCTCATGACGAATCCAGC 60.179 55.000 0.00 0.00 0.00 4.85
212 213 1.134580 ACAGGCTCATGACGAATCCAG 60.135 52.381 0.00 0.00 0.00 3.86
213 214 0.904649 ACAGGCTCATGACGAATCCA 59.095 50.000 0.00 0.00 0.00 3.41
214 215 2.029838 AACAGGCTCATGACGAATCC 57.970 50.000 0.00 0.00 0.00 3.01
215 216 3.001736 GCTTAACAGGCTCATGACGAATC 59.998 47.826 0.00 0.00 0.00 2.52
216 217 2.939103 GCTTAACAGGCTCATGACGAAT 59.061 45.455 0.00 0.00 0.00 3.34
217 218 2.028112 AGCTTAACAGGCTCATGACGAA 60.028 45.455 0.00 0.00 34.70 3.85
218 219 1.550524 AGCTTAACAGGCTCATGACGA 59.449 47.619 0.00 0.00 34.70 4.20
219 220 2.015736 AGCTTAACAGGCTCATGACG 57.984 50.000 0.00 0.00 34.70 4.35
237 238 0.661552 CATTGGCTCTTGATGCGGAG 59.338 55.000 0.00 0.00 0.00 4.63
238 239 0.749091 CCATTGGCTCTTGATGCGGA 60.749 55.000 0.00 0.00 0.00 5.54
239 240 1.731433 CCCATTGGCTCTTGATGCGG 61.731 60.000 0.00 0.00 0.00 5.69
240 241 1.731433 CCCCATTGGCTCTTGATGCG 61.731 60.000 0.00 0.00 0.00 4.73
241 242 1.397390 CCCCCATTGGCTCTTGATGC 61.397 60.000 0.00 0.00 0.00 3.91
242 243 0.259647 TCCCCCATTGGCTCTTGATG 59.740 55.000 0.00 0.00 0.00 3.07
243 244 1.009997 TTCCCCCATTGGCTCTTGAT 58.990 50.000 0.00 0.00 0.00 2.57
244 245 0.039618 GTTCCCCCATTGGCTCTTGA 59.960 55.000 0.00 0.00 0.00 3.02
245 246 0.251742 TGTTCCCCCATTGGCTCTTG 60.252 55.000 0.00 0.00 0.00 3.02
246 247 0.251787 GTGTTCCCCCATTGGCTCTT 60.252 55.000 0.00 0.00 0.00 2.85
247 248 1.384191 GTGTTCCCCCATTGGCTCT 59.616 57.895 0.00 0.00 0.00 4.09
248 249 1.682344 GGTGTTCCCCCATTGGCTC 60.682 63.158 0.00 0.00 0.00 4.70
249 250 2.445155 GGTGTTCCCCCATTGGCT 59.555 61.111 0.00 0.00 0.00 4.75
250 251 2.119391 TGGTGTTCCCCCATTGGC 59.881 61.111 0.00 0.00 0.00 4.52
251 252 0.701731 TAGTGGTGTTCCCCCATTGG 59.298 55.000 0.00 0.00 33.76 3.16
252 253 1.615919 GGTAGTGGTGTTCCCCCATTG 60.616 57.143 0.00 0.00 33.76 2.82
253 254 0.702316 GGTAGTGGTGTTCCCCCATT 59.298 55.000 0.00 0.00 33.76 3.16
254 255 0.476808 TGGTAGTGGTGTTCCCCCAT 60.477 55.000 0.00 0.00 33.76 4.00
255 256 1.073629 TGGTAGTGGTGTTCCCCCA 60.074 57.895 0.00 0.00 0.00 4.96
256 257 1.131928 ACTGGTAGTGGTGTTCCCCC 61.132 60.000 0.00 0.00 0.00 5.40
257 258 0.769247 AACTGGTAGTGGTGTTCCCC 59.231 55.000 0.00 0.00 0.00 4.81
258 259 1.697982 AGAACTGGTAGTGGTGTTCCC 59.302 52.381 0.00 0.00 39.45 3.97
259 260 2.367567 TCAGAACTGGTAGTGGTGTTCC 59.632 50.000 1.93 0.00 39.45 3.62
260 261 3.555168 CCTCAGAACTGGTAGTGGTGTTC 60.555 52.174 1.93 0.00 39.06 3.18
261 262 2.368875 CCTCAGAACTGGTAGTGGTGTT 59.631 50.000 1.93 0.00 0.00 3.32
262 263 1.971357 CCTCAGAACTGGTAGTGGTGT 59.029 52.381 1.93 0.00 0.00 4.16
263 264 1.338200 GCCTCAGAACTGGTAGTGGTG 60.338 57.143 1.93 0.00 0.00 4.17
264 265 0.977395 GCCTCAGAACTGGTAGTGGT 59.023 55.000 1.93 0.00 0.00 4.16
265 266 0.976641 TGCCTCAGAACTGGTAGTGG 59.023 55.000 1.93 0.00 0.00 4.00
266 267 1.895798 TCTGCCTCAGAACTGGTAGTG 59.104 52.381 1.93 0.00 37.57 2.74
267 268 2.175202 CTCTGCCTCAGAACTGGTAGT 58.825 52.381 1.93 0.00 40.18 2.73
268 269 1.480137 CCTCTGCCTCAGAACTGGTAG 59.520 57.143 1.93 0.00 40.18 3.18
269 270 1.561643 CCTCTGCCTCAGAACTGGTA 58.438 55.000 1.93 0.00 40.18 3.25
270 271 1.835927 GCCTCTGCCTCAGAACTGGT 61.836 60.000 1.93 0.00 40.18 4.00
271 272 1.078567 GCCTCTGCCTCAGAACTGG 60.079 63.158 1.93 0.00 40.18 4.00
272 273 0.391395 CAGCCTCTGCCTCAGAACTG 60.391 60.000 10.27 10.27 40.18 3.16
273 274 1.981636 CAGCCTCTGCCTCAGAACT 59.018 57.895 0.00 0.00 40.18 3.01
274 275 4.613929 CAGCCTCTGCCTCAGAAC 57.386 61.111 0.00 0.00 40.18 3.01
283 284 1.378119 TGCATCTTGGCAGCCTCTG 60.378 57.895 14.15 5.91 39.25 3.35
284 285 3.084304 TGCATCTTGGCAGCCTCT 58.916 55.556 14.15 0.00 39.25 3.69
291 292 1.007734 CATCCGCATGCATCTTGGC 60.008 57.895 19.57 0.00 0.00 4.52
292 293 0.591659 CTCATCCGCATGCATCTTGG 59.408 55.000 19.57 10.45 0.00 3.61
293 294 0.591659 CCTCATCCGCATGCATCTTG 59.408 55.000 19.57 9.36 0.00 3.02
294 295 0.471191 TCCTCATCCGCATGCATCTT 59.529 50.000 19.57 0.00 0.00 2.40
295 296 0.691332 ATCCTCATCCGCATGCATCT 59.309 50.000 19.57 0.00 0.00 2.90
296 297 0.803117 CATCCTCATCCGCATGCATC 59.197 55.000 19.57 0.00 0.00 3.91
297 298 0.399075 TCATCCTCATCCGCATGCAT 59.601 50.000 19.57 0.85 0.00 3.96
298 299 0.250166 CTCATCCTCATCCGCATGCA 60.250 55.000 19.57 0.00 0.00 3.96
299 300 0.034476 TCTCATCCTCATCCGCATGC 59.966 55.000 7.91 7.91 0.00 4.06
300 301 2.619147 GATCTCATCCTCATCCGCATG 58.381 52.381 0.00 0.00 0.00 4.06
301 302 1.204231 CGATCTCATCCTCATCCGCAT 59.796 52.381 0.00 0.00 0.00 4.73
302 303 0.600057 CGATCTCATCCTCATCCGCA 59.400 55.000 0.00 0.00 0.00 5.69
303 304 0.884514 TCGATCTCATCCTCATCCGC 59.115 55.000 0.00 0.00 0.00 5.54
304 305 1.472082 CCTCGATCTCATCCTCATCCG 59.528 57.143 0.00 0.00 0.00 4.18
305 306 2.754552 CTCCTCGATCTCATCCTCATCC 59.245 54.545 0.00 0.00 0.00 3.51
306 307 2.754552 CCTCCTCGATCTCATCCTCATC 59.245 54.545 0.00 0.00 0.00 2.92
307 308 2.378208 TCCTCCTCGATCTCATCCTCAT 59.622 50.000 0.00 0.00 0.00 2.90
308 309 1.777272 TCCTCCTCGATCTCATCCTCA 59.223 52.381 0.00 0.00 0.00 3.86
309 310 2.436417 CTCCTCCTCGATCTCATCCTC 58.564 57.143 0.00 0.00 0.00 3.71
310 311 1.075374 CCTCCTCCTCGATCTCATCCT 59.925 57.143 0.00 0.00 0.00 3.24
311 312 1.544724 CCTCCTCCTCGATCTCATCC 58.455 60.000 0.00 0.00 0.00 3.51
312 313 0.887933 GCCTCCTCCTCGATCTCATC 59.112 60.000 0.00 0.00 0.00 2.92
313 314 0.893270 CGCCTCCTCCTCGATCTCAT 60.893 60.000 0.00 0.00 0.00 2.90
314 315 1.527148 CGCCTCCTCCTCGATCTCA 60.527 63.158 0.00 0.00 0.00 3.27
315 316 2.265182 CCGCCTCCTCCTCGATCTC 61.265 68.421 0.00 0.00 0.00 2.75
316 317 2.075355 ATCCGCCTCCTCCTCGATCT 62.075 60.000 0.00 0.00 0.00 2.75
317 318 1.182385 AATCCGCCTCCTCCTCGATC 61.182 60.000 0.00 0.00 0.00 3.69
318 319 0.112606 TAATCCGCCTCCTCCTCGAT 59.887 55.000 0.00 0.00 0.00 3.59
319 320 0.537600 CTAATCCGCCTCCTCCTCGA 60.538 60.000 0.00 0.00 0.00 4.04
320 321 1.528292 CCTAATCCGCCTCCTCCTCG 61.528 65.000 0.00 0.00 0.00 4.63
321 322 0.178958 TCCTAATCCGCCTCCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
322 323 0.470268 GTCCTAATCCGCCTCCTCCT 60.470 60.000 0.00 0.00 0.00 3.69
323 324 0.759436 TGTCCTAATCCGCCTCCTCC 60.759 60.000 0.00 0.00 0.00 4.30
324 325 1.120530 TTGTCCTAATCCGCCTCCTC 58.879 55.000 0.00 0.00 0.00 3.71
325 326 0.831307 GTTGTCCTAATCCGCCTCCT 59.169 55.000 0.00 0.00 0.00 3.69
326 327 0.831307 AGTTGTCCTAATCCGCCTCC 59.169 55.000 0.00 0.00 0.00 4.30
327 328 1.757699 AGAGTTGTCCTAATCCGCCTC 59.242 52.381 0.00 0.00 0.00 4.70
328 329 1.482593 CAGAGTTGTCCTAATCCGCCT 59.517 52.381 0.00 0.00 0.00 5.52
329 330 1.480954 TCAGAGTTGTCCTAATCCGCC 59.519 52.381 0.00 0.00 0.00 6.13
330 331 2.961526 TCAGAGTTGTCCTAATCCGC 57.038 50.000 0.00 0.00 0.00 5.54
331 332 3.384789 TCCATCAGAGTTGTCCTAATCCG 59.615 47.826 0.00 0.00 0.00 4.18
332 333 5.559148 ATCCATCAGAGTTGTCCTAATCC 57.441 43.478 0.00 0.00 0.00 3.01
333 334 6.926272 GTGTATCCATCAGAGTTGTCCTAATC 59.074 42.308 0.00 0.00 0.00 1.75
334 335 6.613271 AGTGTATCCATCAGAGTTGTCCTAAT 59.387 38.462 0.00 0.00 0.00 1.73
335 336 5.958380 AGTGTATCCATCAGAGTTGTCCTAA 59.042 40.000 0.00 0.00 0.00 2.69
336 337 5.519808 AGTGTATCCATCAGAGTTGTCCTA 58.480 41.667 0.00 0.00 0.00 2.94
337 338 4.357325 AGTGTATCCATCAGAGTTGTCCT 58.643 43.478 0.00 0.00 0.00 3.85
338 339 4.688021 GAGTGTATCCATCAGAGTTGTCC 58.312 47.826 0.00 0.00 0.00 4.02
349 350 8.398767 CTCAGTAGAGGGAGGAGTGTATCCAT 62.399 50.000 0.00 0.00 43.53 3.41
350 351 7.166423 CTCAGTAGAGGGAGGAGTGTATCCA 62.166 52.000 0.00 0.00 43.53 3.41
351 352 4.748548 CTCAGTAGAGGGAGGAGTGTATCC 60.749 54.167 0.00 0.00 42.39 2.59
352 353 4.394729 CTCAGTAGAGGGAGGAGTGTATC 58.605 52.174 0.00 0.00 38.26 2.24
353 354 3.435890 GCTCAGTAGAGGGAGGAGTGTAT 60.436 52.174 0.00 0.00 42.33 2.29
354 355 2.092321 GCTCAGTAGAGGGAGGAGTGTA 60.092 54.545 0.00 0.00 42.33 2.90
355 356 1.341581 GCTCAGTAGAGGGAGGAGTGT 60.342 57.143 0.00 0.00 42.33 3.55
356 357 1.398692 GCTCAGTAGAGGGAGGAGTG 58.601 60.000 0.00 0.00 42.33 3.51
357 358 0.260523 GGCTCAGTAGAGGGAGGAGT 59.739 60.000 0.00 0.00 42.33 3.85
358 359 0.469144 GGGCTCAGTAGAGGGAGGAG 60.469 65.000 0.00 0.00 42.33 3.69
359 360 0.926720 AGGGCTCAGTAGAGGGAGGA 60.927 60.000 0.00 0.00 42.33 3.71
360 361 0.469144 GAGGGCTCAGTAGAGGGAGG 60.469 65.000 0.00 0.00 42.33 4.30
361 362 0.260230 TGAGGGCTCAGTAGAGGGAG 59.740 60.000 0.00 0.00 42.33 4.30
362 363 0.937441 ATGAGGGCTCAGTAGAGGGA 59.063 55.000 0.00 0.00 43.61 4.20
363 364 1.047002 CATGAGGGCTCAGTAGAGGG 58.953 60.000 0.00 0.00 43.61 4.30
364 365 1.047002 CCATGAGGGCTCAGTAGAGG 58.953 60.000 0.00 0.00 43.61 3.69
385 386 5.728471 TCATCTTGGTCTTCAGCTTCTTAG 58.272 41.667 0.00 0.00 0.00 2.18
386 387 5.745312 TCATCTTGGTCTTCAGCTTCTTA 57.255 39.130 0.00 0.00 0.00 2.10
387 388 4.630644 TCATCTTGGTCTTCAGCTTCTT 57.369 40.909 0.00 0.00 0.00 2.52
388 389 4.285517 TCTTCATCTTGGTCTTCAGCTTCT 59.714 41.667 0.00 0.00 0.00 2.85
389 390 4.573900 TCTTCATCTTGGTCTTCAGCTTC 58.426 43.478 0.00 0.00 0.00 3.86
390 391 4.630644 TCTTCATCTTGGTCTTCAGCTT 57.369 40.909 0.00 0.00 0.00 3.74
391 392 4.577875 CTTCTTCATCTTGGTCTTCAGCT 58.422 43.478 0.00 0.00 0.00 4.24
392 393 3.126686 GCTTCTTCATCTTGGTCTTCAGC 59.873 47.826 0.00 0.00 0.00 4.26
393 394 4.577875 AGCTTCTTCATCTTGGTCTTCAG 58.422 43.478 0.00 0.00 0.00 3.02
394 395 4.630644 AGCTTCTTCATCTTGGTCTTCA 57.369 40.909 0.00 0.00 0.00 3.02
395 396 7.011295 CAGAATAGCTTCTTCATCTTGGTCTTC 59.989 40.741 10.34 0.00 39.78 2.87
396 397 6.822676 CAGAATAGCTTCTTCATCTTGGTCTT 59.177 38.462 10.34 0.00 39.78 3.01
397 398 6.347696 CAGAATAGCTTCTTCATCTTGGTCT 58.652 40.000 10.34 0.00 39.78 3.85
398 399 5.007528 GCAGAATAGCTTCTTCATCTTGGTC 59.992 44.000 10.34 0.00 39.78 4.02
399 400 4.880696 GCAGAATAGCTTCTTCATCTTGGT 59.119 41.667 10.34 0.00 39.78 3.67
400 401 4.880120 TGCAGAATAGCTTCTTCATCTTGG 59.120 41.667 10.34 0.00 39.78 3.61
401 402 6.431278 CATGCAGAATAGCTTCTTCATCTTG 58.569 40.000 10.34 6.61 41.51 3.02
402 403 5.008811 GCATGCAGAATAGCTTCTTCATCTT 59.991 40.000 14.21 0.03 41.51 2.40
403 404 4.515944 GCATGCAGAATAGCTTCTTCATCT 59.484 41.667 14.21 0.00 41.51 2.90
404 405 4.275196 TGCATGCAGAATAGCTTCTTCATC 59.725 41.667 18.46 2.72 41.51 2.92
405 406 4.204799 TGCATGCAGAATAGCTTCTTCAT 58.795 39.130 18.46 3.69 43.36 2.57
406 407 3.613030 TGCATGCAGAATAGCTTCTTCA 58.387 40.909 18.46 1.56 39.78 3.02
407 408 3.003482 CCTGCATGCAGAATAGCTTCTTC 59.997 47.826 42.21 0.00 46.30 2.87
408 409 2.950309 CCTGCATGCAGAATAGCTTCTT 59.050 45.455 42.21 0.00 46.30 2.52
409 410 2.573369 CCTGCATGCAGAATAGCTTCT 58.427 47.619 42.21 0.00 46.30 2.85
410 411 1.001597 GCCTGCATGCAGAATAGCTTC 60.002 52.381 42.21 19.07 46.30 3.86
411 412 1.030457 GCCTGCATGCAGAATAGCTT 58.970 50.000 42.21 0.00 46.30 3.74
412 413 0.822532 GGCCTGCATGCAGAATAGCT 60.823 55.000 42.21 0.00 46.30 3.32
413 414 1.658673 GGCCTGCATGCAGAATAGC 59.341 57.895 42.21 34.55 46.30 2.97
414 415 0.178998 AGGGCCTGCATGCAGAATAG 60.179 55.000 42.21 28.23 46.30 1.73
415 416 0.179009 GAGGGCCTGCATGCAGAATA 60.179 55.000 42.21 11.98 46.30 1.75
416 417 1.455217 GAGGGCCTGCATGCAGAAT 60.455 57.895 42.21 26.31 46.30 2.40
417 418 2.044650 GAGGGCCTGCATGCAGAA 60.045 61.111 42.21 12.78 46.30 3.02
418 419 4.478371 CGAGGGCCTGCATGCAGA 62.478 66.667 42.21 13.57 46.30 4.26
419 420 4.478371 TCGAGGGCCTGCATGCAG 62.478 66.667 35.88 35.88 43.26 4.41
420 421 4.478371 CTCGAGGGCCTGCATGCA 62.478 66.667 21.29 21.29 0.00 3.96
421 422 2.955022 ATTCTCGAGGGCCTGCATGC 62.955 60.000 12.95 11.82 0.00 4.06
422 423 0.883814 GATTCTCGAGGGCCTGCATG 60.884 60.000 12.95 0.00 0.00 4.06
423 424 1.449353 GATTCTCGAGGGCCTGCAT 59.551 57.895 12.95 0.00 0.00 3.96
424 425 2.735772 GGATTCTCGAGGGCCTGCA 61.736 63.158 12.95 0.00 0.00 4.41
425 426 2.110006 GGATTCTCGAGGGCCTGC 59.890 66.667 12.95 1.12 0.00 4.85
426 427 1.626356 TTGGGATTCTCGAGGGCCTG 61.626 60.000 12.95 3.26 0.00 4.85
427 428 0.914417 TTTGGGATTCTCGAGGGCCT 60.914 55.000 5.25 5.25 0.00 5.19
428 429 0.034477 TTTTGGGATTCTCGAGGGCC 60.034 55.000 13.56 11.24 0.00 5.80
429 430 1.340114 ACTTTTGGGATTCTCGAGGGC 60.340 52.381 13.56 2.02 0.00 5.19
435 436 7.412137 CAAAATGACAACTTTTGGGATTCTC 57.588 36.000 6.42 0.00 39.04 2.87
448 450 8.958119 TGACTATACCTATCCAAAATGACAAC 57.042 34.615 0.00 0.00 0.00 3.32
554 556 4.273300 AGGAGCTGAGGAGGTACTATTT 57.727 45.455 0.00 0.00 39.25 1.40
564 566 5.248640 CACAATAAGAAAAGGAGCTGAGGA 58.751 41.667 0.00 0.00 0.00 3.71
610 613 3.663025 AGCTCTCTTTCTGTCTTTCAGC 58.337 45.455 0.00 0.00 43.32 4.26
754 759 9.623000 AACTGAAGGTACAACTACAAAAAGTAT 57.377 29.630 0.00 0.00 30.93 2.12
787 792 5.657446 TCTTATATTATGGGACGGAGGGAA 58.343 41.667 0.00 0.00 0.00 3.97
874 899 7.938490 AGCCAACTCATTTTCAAAATGGTATTT 59.062 29.630 20.44 7.81 0.00 1.40
960 987 8.400947 GCATCACACTAACATGATAGAATGTTT 58.599 33.333 16.18 4.62 46.19 2.83
976 1003 6.658816 ACAATCACCAAAATAGCATCACACTA 59.341 34.615 0.00 0.00 0.00 2.74
1011 1038 7.878127 AGCTTCAAGTTTACTCATGTTAAGCTA 59.122 33.333 0.00 0.00 42.85 3.32
1013 1040 6.903419 AGCTTCAAGTTTACTCATGTTAAGC 58.097 36.000 0.00 0.00 36.69 3.09
1040 1067 2.989166 GCCTGACAAAGTGCAAAATAGC 59.011 45.455 0.00 0.00 0.00 2.97
1064 1091 0.241749 ACACAACAATCATGGCAGCG 59.758 50.000 0.00 0.00 0.00 5.18
1082 1109 4.163458 TGGACCATAACCATAAGGACAGAC 59.837 45.833 0.00 0.00 38.69 3.51
1091 1118 4.975147 AGGAGTTGATGGACCATAACCATA 59.025 41.667 7.05 0.00 46.48 2.74
1136 1163 6.399639 TTTAGAACTGGACCACCATTTTTC 57.600 37.500 0.00 0.00 45.87 2.29
1137 1164 6.183360 CCTTTTAGAACTGGACCACCATTTTT 60.183 38.462 0.00 0.00 45.87 1.94
1241 1268 5.321927 CCCAGATAAACCTTACCAAAGTGT 58.678 41.667 0.00 0.00 0.00 3.55
1274 1301 1.975660 TAGCCACCTGTTGTTTGTCC 58.024 50.000 0.00 0.00 0.00 4.02
1314 1343 5.105392 TGAACTCCTTTTTCATGTGCTTGTT 60.105 36.000 0.00 0.00 0.00 2.83
1328 1357 1.978580 ACCTCATCGGTGAACTCCTTT 59.021 47.619 0.00 0.00 46.80 3.11
1441 1471 1.336440 CATACAGACTCCCTCTCGCTG 59.664 57.143 0.00 0.00 0.00 5.18
1563 1593 2.277084 GTCACCATGACGGATTGTACC 58.723 52.381 0.00 0.00 37.67 3.34
1578 1608 1.069227 GTTGGCAGATTTCACGTCACC 60.069 52.381 0.00 0.00 0.00 4.02
1579 1609 1.601903 TGTTGGCAGATTTCACGTCAC 59.398 47.619 0.00 0.00 0.00 3.67
1580 1610 1.960417 TGTTGGCAGATTTCACGTCA 58.040 45.000 0.00 0.00 0.00 4.35
1581 1611 2.474526 CGATGTTGGCAGATTTCACGTC 60.475 50.000 0.00 0.00 0.00 4.34
1582 1612 1.464608 CGATGTTGGCAGATTTCACGT 59.535 47.619 0.00 0.00 0.00 4.49
1583 1613 1.464608 ACGATGTTGGCAGATTTCACG 59.535 47.619 0.00 0.00 0.00 4.35
1584 1614 3.189287 AGAACGATGTTGGCAGATTTCAC 59.811 43.478 0.00 0.00 0.00 3.18
1585 1615 3.411446 AGAACGATGTTGGCAGATTTCA 58.589 40.909 0.00 0.00 0.00 2.69
1586 1616 3.484229 CGAGAACGATGTTGGCAGATTTC 60.484 47.826 0.00 0.00 42.66 2.17
1587 1617 2.416547 CGAGAACGATGTTGGCAGATTT 59.583 45.455 0.00 0.00 42.66 2.17
1588 1618 2.002586 CGAGAACGATGTTGGCAGATT 58.997 47.619 0.00 0.00 42.66 2.40
1589 1619 1.204704 TCGAGAACGATGTTGGCAGAT 59.795 47.619 0.00 0.00 43.81 2.90
1590 1620 0.601057 TCGAGAACGATGTTGGCAGA 59.399 50.000 0.00 0.00 43.81 4.26
1591 1621 3.122150 TCGAGAACGATGTTGGCAG 57.878 52.632 0.00 0.00 43.81 4.85
1601 1631 4.142966 GGGGTGAACTTTTTATCGAGAACG 60.143 45.833 0.00 0.00 41.26 3.95
1602 1632 4.758165 TGGGGTGAACTTTTTATCGAGAAC 59.242 41.667 0.00 0.00 0.00 3.01
1603 1633 4.975631 TGGGGTGAACTTTTTATCGAGAA 58.024 39.130 0.00 0.00 0.00 2.87
1604 1634 4.627284 TGGGGTGAACTTTTTATCGAGA 57.373 40.909 0.00 0.00 0.00 4.04
1605 1635 5.335661 CCTTTGGGGTGAACTTTTTATCGAG 60.336 44.000 0.00 0.00 0.00 4.04
1606 1636 4.521256 CCTTTGGGGTGAACTTTTTATCGA 59.479 41.667 0.00 0.00 0.00 3.59
1607 1637 4.805219 CCTTTGGGGTGAACTTTTTATCG 58.195 43.478 0.00 0.00 0.00 2.92
1621 1651 3.733443 CAAAGTCTGAAACCTTTGGGG 57.267 47.619 9.98 0.00 41.89 4.96
1624 1654 3.699038 TGTCCCAAAGTCTGAAACCTTTG 59.301 43.478 10.60 10.60 36.78 2.77
1625 1655 3.976015 TGTCCCAAAGTCTGAAACCTTT 58.024 40.909 0.00 0.00 0.00 3.11
1626 1656 3.662759 TGTCCCAAAGTCTGAAACCTT 57.337 42.857 0.00 0.00 0.00 3.50
1627 1657 3.138283 TGATGTCCCAAAGTCTGAAACCT 59.862 43.478 0.00 0.00 0.00 3.50
1713 1793 5.905331 TCCCTTGCTCCATATATATCGGATT 59.095 40.000 11.83 0.00 0.00 3.01
1719 1799 8.835734 TGTAACAATCCCTTGCTCCATATATAT 58.164 33.333 0.00 0.00 35.69 0.86
1766 1846 4.527038 AGTTCTATGAGGACAACTCCGAAA 59.473 41.667 0.00 0.00 46.01 3.46
1931 2011 2.469465 AATCCACGGTGACCCTGCTG 62.469 60.000 10.28 0.00 0.00 4.41
1941 2021 0.321653 GGCTTCAGACAATCCACGGT 60.322 55.000 0.00 0.00 0.00 4.83
1955 2035 1.756430 GTTCTCCTGGATTGGGCTTC 58.244 55.000 0.00 0.00 0.00 3.86
1969 2049 5.006746 ACTTGTTTCATGTCTTGTCGTTCTC 59.993 40.000 0.00 0.00 0.00 2.87
2024 2104 3.099905 CTCCTGACTATGGTCCACAGAA 58.900 50.000 3.55 0.00 41.47 3.02
2033 2113 3.566322 CGTAGTTCCTCTCCTGACTATGG 59.434 52.174 0.00 0.00 31.25 2.74
2105 2185 6.392625 TGGTAGAAGATACTTCATTCTCCG 57.607 41.667 12.86 0.00 35.09 4.63
2152 2236 9.862371 AACGCAATGAAACCATTACATAATTAA 57.138 25.926 0.00 0.00 33.27 1.40
2153 2237 9.295214 CAACGCAATGAAACCATTACATAATTA 57.705 29.630 0.00 0.00 33.27 1.40
2154 2238 8.031864 TCAACGCAATGAAACCATTACATAATT 58.968 29.630 0.00 0.00 33.27 1.40
2155 2239 7.542890 TCAACGCAATGAAACCATTACATAAT 58.457 30.769 0.00 0.00 33.27 1.28
2170 2258 4.083643 ACTTCTTGATGTCTCAACGCAATG 60.084 41.667 0.00 0.00 36.46 2.82
2191 2279 7.617723 TGAATAAAATTGGCACATACCCTAACT 59.382 33.333 0.00 0.00 39.30 2.24
2192 2280 7.777095 TGAATAAAATTGGCACATACCCTAAC 58.223 34.615 0.00 0.00 39.30 2.34
2356 2448 0.944311 AACATGGAGACGTCGTGTGC 60.944 55.000 10.46 4.45 0.00 4.57
2365 2457 7.630242 TGGAATTCAAATCTAACATGGAGAC 57.370 36.000 7.93 0.00 0.00 3.36
2416 2575 3.489355 AGAACAACTCATTGCATGTGGA 58.511 40.909 0.00 0.00 39.66 4.02
2418 2577 5.618056 AGTAGAACAACTCATTGCATGTG 57.382 39.130 0.00 0.00 39.66 3.21
2419 2578 6.317140 CCATAGTAGAACAACTCATTGCATGT 59.683 38.462 0.00 0.00 39.66 3.21
2423 2582 5.874810 TGTCCATAGTAGAACAACTCATTGC 59.125 40.000 0.00 0.00 39.66 3.56
2428 2587 4.082354 ACCGTGTCCATAGTAGAACAACTC 60.082 45.833 0.00 0.00 0.00 3.01
2430 2589 4.184079 ACCGTGTCCATAGTAGAACAAC 57.816 45.455 0.00 0.00 0.00 3.32
2455 2614 9.985730 TTTGGAGTATTTACTACGAGAAAAGAA 57.014 29.630 0.00 0.00 40.10 2.52
2458 2617 9.415544 GTCTTTGGAGTATTTACTACGAGAAAA 57.584 33.333 7.18 0.00 40.10 2.29
2460 2619 8.114331 TGTCTTTGGAGTATTTACTACGAGAA 57.886 34.615 7.18 0.00 40.10 2.87
2462 2621 7.811236 TGTTGTCTTTGGAGTATTTACTACGAG 59.189 37.037 0.00 0.00 40.10 4.18
2464 2623 7.878477 TGTTGTCTTTGGAGTATTTACTACG 57.122 36.000 0.00 0.00 40.10 3.51
2465 2624 8.175716 GCATGTTGTCTTTGGAGTATTTACTAC 58.824 37.037 0.00 0.00 36.50 2.73
2485 2645 5.557576 TTAGAGCTCATATGAGGCATGTT 57.442 39.130 29.43 6.43 42.29 2.71
2486 2646 5.758790 ATTAGAGCTCATATGAGGCATGT 57.241 39.130 29.43 14.40 42.29 3.21
2487 2647 8.613482 CATTAATTAGAGCTCATATGAGGCATG 58.387 37.037 29.43 15.60 42.29 4.06
2531 2691 8.966868 GTGGAGTCCATTATTCCATAAAAAGAA 58.033 33.333 16.67 0.00 44.97 2.52
2533 2693 8.525290 AGTGGAGTCCATTATTCCATAAAAAG 57.475 34.615 16.67 0.00 44.97 2.27
2539 2699 3.495100 GCGAGTGGAGTCCATTATTCCAT 60.495 47.826 16.67 0.00 44.97 3.41
2541 2701 2.484889 GCGAGTGGAGTCCATTATTCC 58.515 52.381 16.67 0.52 35.28 3.01
2542 2702 2.103263 AGGCGAGTGGAGTCCATTATTC 59.897 50.000 16.67 10.05 35.28 1.75
2550 2714 1.270358 ACTTTTGAGGCGAGTGGAGTC 60.270 52.381 0.00 0.00 0.00 3.36
2551 2715 0.759346 ACTTTTGAGGCGAGTGGAGT 59.241 50.000 0.00 0.00 0.00 3.85
2560 2724 7.382488 GGAGAAACTAAAATTCACTTTTGAGGC 59.618 37.037 0.00 0.00 37.61 4.70
2561 2725 7.867909 GGGAGAAACTAAAATTCACTTTTGAGG 59.132 37.037 0.00 0.00 37.61 3.86
2611 2775 0.323725 ACATGGGGCAAGGCAAGTAG 60.324 55.000 0.00 0.00 0.00 2.57
2618 2782 0.394352 GGTGTCTACATGGGGCAAGG 60.394 60.000 0.00 0.00 0.00 3.61
2622 2786 0.394352 CCTTGGTGTCTACATGGGGC 60.394 60.000 0.00 0.00 31.50 5.80
2640 2804 1.207329 ACCTCGGACATTTCTAGCACC 59.793 52.381 0.00 0.00 0.00 5.01
2670 2834 5.579718 TCCTCGTCGAAAGATTTCTACATC 58.420 41.667 9.70 0.00 45.19 3.06
2685 2849 2.159226 AGAATGCTTACCTTCCTCGTCG 60.159 50.000 0.00 0.00 0.00 5.12
2687 2851 4.024670 AGTAGAATGCTTACCTTCCTCGT 58.975 43.478 0.00 0.00 0.00 4.18
2728 2892 7.566760 TCTTACATTGCCATGTATCGAAATT 57.433 32.000 11.12 0.00 43.96 1.82
2741 2905 9.221775 CGACAAGTTTTATATTCTTACATTGCC 57.778 33.333 0.00 0.00 0.00 4.52
2742 2906 9.769093 ACGACAAGTTTTATATTCTTACATTGC 57.231 29.630 0.00 0.00 0.00 3.56
2755 2919 9.769093 GCATTAATAGACAACGACAAGTTTTAT 57.231 29.630 0.00 0.00 42.02 1.40
2756 2920 8.775527 TGCATTAATAGACAACGACAAGTTTTA 58.224 29.630 0.00 0.00 42.02 1.52
2757 2921 7.644490 TGCATTAATAGACAACGACAAGTTTT 58.356 30.769 0.00 0.00 42.02 2.43
2758 2922 7.197071 TGCATTAATAGACAACGACAAGTTT 57.803 32.000 0.00 0.00 42.02 2.66
2759 2923 6.795098 TGCATTAATAGACAACGACAAGTT 57.205 33.333 0.00 0.00 45.45 2.66
2760 2924 6.593770 TCATGCATTAATAGACAACGACAAGT 59.406 34.615 0.00 0.00 0.00 3.16
2761 2925 7.003939 TCATGCATTAATAGACAACGACAAG 57.996 36.000 0.00 0.00 0.00 3.16
2762 2926 6.976636 TCATGCATTAATAGACAACGACAA 57.023 33.333 0.00 0.00 0.00 3.18
2763 2927 6.816140 TCTTCATGCATTAATAGACAACGACA 59.184 34.615 0.00 0.00 0.00 4.35
2764 2928 7.010552 AGTCTTCATGCATTAATAGACAACGAC 59.989 37.037 20.51 11.21 35.61 4.34
2765 2929 7.041721 AGTCTTCATGCATTAATAGACAACGA 58.958 34.615 20.51 1.77 35.61 3.85
2766 2930 7.239166 AGTCTTCATGCATTAATAGACAACG 57.761 36.000 20.51 0.00 35.61 4.10
2767 2931 9.282247 CAAAGTCTTCATGCATTAATAGACAAC 57.718 33.333 20.51 7.80 35.61 3.32
2768 2932 9.013229 ACAAAGTCTTCATGCATTAATAGACAA 57.987 29.630 20.51 0.00 35.61 3.18
2769 2933 8.453320 CACAAAGTCTTCATGCATTAATAGACA 58.547 33.333 20.51 2.94 35.61 3.41
2770 2934 8.454106 ACACAAAGTCTTCATGCATTAATAGAC 58.546 33.333 14.72 14.72 33.86 2.59
2771 2935 8.453320 CACACAAAGTCTTCATGCATTAATAGA 58.547 33.333 0.00 0.00 0.00 1.98
2772 2936 8.239314 ACACACAAAGTCTTCATGCATTAATAG 58.761 33.333 0.00 0.00 0.00 1.73
2773 2937 8.022550 CACACACAAAGTCTTCATGCATTAATA 58.977 33.333 0.00 0.00 0.00 0.98
2774 2938 6.864685 CACACACAAAGTCTTCATGCATTAAT 59.135 34.615 0.00 0.00 0.00 1.40
2775 2939 6.183360 ACACACACAAAGTCTTCATGCATTAA 60.183 34.615 0.00 0.00 0.00 1.40
2776 2940 5.299028 ACACACACAAAGTCTTCATGCATTA 59.701 36.000 0.00 0.00 0.00 1.90
2777 2941 4.098349 ACACACACAAAGTCTTCATGCATT 59.902 37.500 0.00 0.00 0.00 3.56
2778 2942 3.633525 ACACACACAAAGTCTTCATGCAT 59.366 39.130 0.00 0.00 0.00 3.96
2779 2943 3.016031 ACACACACAAAGTCTTCATGCA 58.984 40.909 0.00 0.00 0.00 3.96
2780 2944 3.698029 ACACACACAAAGTCTTCATGC 57.302 42.857 0.00 0.00 0.00 4.06
2781 2945 3.792956 GCAACACACACAAAGTCTTCATG 59.207 43.478 0.00 0.00 0.00 3.07
2782 2946 3.443329 TGCAACACACACAAAGTCTTCAT 59.557 39.130 0.00 0.00 0.00 2.57
2783 2947 2.816672 TGCAACACACACAAAGTCTTCA 59.183 40.909 0.00 0.00 0.00 3.02
2784 2948 3.485947 TGCAACACACACAAAGTCTTC 57.514 42.857 0.00 0.00 0.00 2.87
2836 3001 7.933577 CCCTTACACATAGTACAATCATCATGT 59.066 37.037 0.00 0.00 30.91 3.21
2862 3028 0.107848 CATCGGAACAGTACACCCCC 60.108 60.000 0.00 0.00 0.00 5.40
2871 3037 4.327982 ACCATGACTATCATCGGAACAG 57.672 45.455 0.00 0.00 34.28 3.16
2877 3043 5.047021 AGGAACCATACCATGACTATCATCG 60.047 44.000 0.00 0.00 34.28 3.84
2898 3064 2.026729 TGCAAACGATTCCATACCAGGA 60.027 45.455 0.00 0.00 35.41 3.86
2899 3065 2.355756 CTGCAAACGATTCCATACCAGG 59.644 50.000 0.00 0.00 0.00 4.45
2900 3066 2.355756 CCTGCAAACGATTCCATACCAG 59.644 50.000 0.00 0.00 0.00 4.00
2901 3067 2.290641 ACCTGCAAACGATTCCATACCA 60.291 45.455 0.00 0.00 0.00 3.25
2902 3068 2.365582 ACCTGCAAACGATTCCATACC 58.634 47.619 0.00 0.00 0.00 2.73
2903 3069 5.751243 ATTACCTGCAAACGATTCCATAC 57.249 39.130 0.00 0.00 0.00 2.39
2904 3070 6.375736 TCAAATTACCTGCAAACGATTCCATA 59.624 34.615 0.00 0.00 0.00 2.74
2905 3071 5.184864 TCAAATTACCTGCAAACGATTCCAT 59.815 36.000 0.00 0.00 0.00 3.41
2947 3113 7.607607 TGCTCTCAAATTAACATACACAGATGT 59.392 33.333 0.00 0.00 41.92 3.06
2949 3115 8.043113 TCTGCTCTCAAATTAACATACACAGAT 58.957 33.333 0.00 0.00 0.00 2.90
2952 3118 7.977789 TTCTGCTCTCAAATTAACATACACA 57.022 32.000 0.00 0.00 0.00 3.72
2953 3119 8.668353 TGATTCTGCTCTCAAATTAACATACAC 58.332 33.333 0.00 0.00 0.00 2.90
2994 3160 0.250295 CACTGGCTCGGTCTTTGGAA 60.250 55.000 0.00 0.00 0.00 3.53
3004 3177 3.963383 AGTTACAAAAACACTGGCTCG 57.037 42.857 0.00 0.00 0.00 5.03
3045 3218 3.591527 TCTCCTGGTGGATAATGTGGTTT 59.408 43.478 0.00 0.00 42.29 3.27
3076 3253 3.496331 CCACCCAACCACAAATCTTAGT 58.504 45.455 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.