Multiple sequence alignment - TraesCS1B01G414100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G414100 chr1B 100.000 3346 0 0 1 3346 639003617 639006962 0.000000e+00 6180.0
1 TraesCS1B01G414100 chr1A 89.101 1101 87 22 1985 3068 555818681 555819765 0.000000e+00 1338.0
2 TraesCS1B01G414100 chr1A 84.691 1117 53 26 734 1789 555817302 555818361 0.000000e+00 1007.0
3 TraesCS1B01G414100 chr1A 94.138 290 16 1 3058 3346 555819787 555820076 1.100000e-119 440.0
4 TraesCS1B01G414100 chr1A 86.316 95 6 6 1788 1878 555818407 555818498 2.750000e-16 97.1
5 TraesCS1B01G414100 chr1A 77.143 105 20 3 2372 2474 464115039 464115141 1.300000e-04 58.4
6 TraesCS1B01G414100 chr1A 100.000 30 0 0 2445 2474 290552682 290552653 4.660000e-04 56.5
7 TraesCS1B01G414100 chr1D 86.482 1191 53 28 734 1878 463856363 463857491 0.000000e+00 1208.0
8 TraesCS1B01G414100 chr1D 88.288 999 66 28 2386 3346 463857895 463858880 0.000000e+00 1149.0
9 TraesCS1B01G414100 chr1D 89.474 228 19 4 1985 2212 463857673 463857895 1.970000e-72 283.0
10 TraesCS1B01G414100 chr1D 86.667 60 6 1 2415 2474 426167651 426167594 7.750000e-07 65.8
11 TraesCS1B01G414100 chr6B 88.532 436 41 4 145 577 653231616 653232045 1.380000e-143 520.0
12 TraesCS1B01G414100 chr6B 76.569 239 34 14 3098 3320 57456784 57456552 9.810000e-21 111.0
13 TraesCS1B01G414100 chr5B 86.957 437 45 8 1186 1619 228170310 228170737 6.490000e-132 481.0
14 TraesCS1B01G414100 chr5B 90.789 76 6 1 980 1055 228169994 228170068 2.120000e-17 100.0
15 TraesCS1B01G414100 chrUn 83.643 538 52 18 1186 1697 306016891 306017418 1.090000e-129 473.0
16 TraesCS1B01G414100 chr2A 79.110 517 92 7 147 648 725599396 725598881 3.200000e-90 342.0
17 TraesCS1B01G414100 chr2A 78.917 517 93 7 147 648 725546396 725545881 1.490000e-88 337.0
18 TraesCS1B01G414100 chr2A 78.917 517 93 7 147 648 725664780 725664265 1.490000e-88 337.0
19 TraesCS1B01G414100 chr7D 88.933 253 28 0 325 577 541928254 541928506 2.510000e-81 313.0
20 TraesCS1B01G414100 chr2D 76.957 230 43 8 1999 2226 619065740 619065519 4.530000e-24 122.0
21 TraesCS1B01G414100 chr2B 77.931 145 30 2 2079 2222 49143568 49143425 4.600000e-14 89.8
22 TraesCS1B01G414100 chr5A 81.308 107 15 4 1071 1173 277968332 277968437 7.690000e-12 82.4
23 TraesCS1B01G414100 chr3D 82.192 73 9 4 469 538 279203810 279203881 3.610000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G414100 chr1B 639003617 639006962 3345 False 6180.000 6180 100.000000 1 3346 1 chr1B.!!$F1 3345
1 TraesCS1B01G414100 chr1A 555817302 555820076 2774 False 720.525 1338 88.561500 734 3346 4 chr1A.!!$F2 2612
2 TraesCS1B01G414100 chr1D 463856363 463858880 2517 False 880.000 1208 88.081333 734 3346 3 chr1D.!!$F1 2612
3 TraesCS1B01G414100 chr5B 228169994 228170737 743 False 290.500 481 88.873000 980 1619 2 chr5B.!!$F1 639
4 TraesCS1B01G414100 chrUn 306016891 306017418 527 False 473.000 473 83.643000 1186 1697 1 chrUn.!!$F1 511
5 TraesCS1B01G414100 chr2A 725598881 725599396 515 True 342.000 342 79.110000 147 648 1 chr2A.!!$R2 501
6 TraesCS1B01G414100 chr2A 725545881 725546396 515 True 337.000 337 78.917000 147 648 1 chr2A.!!$R1 501
7 TraesCS1B01G414100 chr2A 725664265 725664780 515 True 337.000 337 78.917000 147 648 1 chr2A.!!$R3 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 941 0.108186 CGTGTCTCCATTAGCTGCCA 60.108 55.0 0.0 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2871 3203 0.034767 ATGGGATGGCCATATGAGCG 60.035 55.0 20.84 0.0 35.15 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.374184 TCACTGGAAAATTATGGCCCG 58.626 47.619 0.00 0.00 0.00 6.13
21 22 1.408702 CACTGGAAAATTATGGCCCGG 59.591 52.381 0.00 0.00 0.00 5.73
22 23 1.286553 ACTGGAAAATTATGGCCCGGA 59.713 47.619 0.73 0.00 0.00 5.14
23 24 1.681264 CTGGAAAATTATGGCCCGGAC 59.319 52.381 0.73 0.00 0.00 4.79
24 25 1.286553 TGGAAAATTATGGCCCGGACT 59.713 47.619 0.73 0.00 0.00 3.85
25 26 1.681264 GGAAAATTATGGCCCGGACTG 59.319 52.381 0.73 0.00 0.00 3.51
26 27 1.067060 GAAAATTATGGCCCGGACTGC 59.933 52.381 0.73 0.00 0.00 4.40
27 28 0.258774 AAATTATGGCCCGGACTGCT 59.741 50.000 0.73 0.00 0.00 4.24
28 29 0.179018 AATTATGGCCCGGACTGCTC 60.179 55.000 0.73 0.00 0.00 4.26
29 30 2.056906 ATTATGGCCCGGACTGCTCC 62.057 60.000 0.73 0.00 0.00 4.70
37 38 2.432628 GGACTGCTCCGTGAACCG 60.433 66.667 0.00 0.00 0.00 4.44
38 39 2.649034 GACTGCTCCGTGAACCGA 59.351 61.111 0.00 0.00 39.56 4.69
39 40 1.215647 GACTGCTCCGTGAACCGAT 59.784 57.895 0.00 0.00 39.56 4.18
40 41 0.454600 GACTGCTCCGTGAACCGATA 59.545 55.000 0.00 0.00 39.56 2.92
41 42 0.456221 ACTGCTCCGTGAACCGATAG 59.544 55.000 0.00 0.00 39.56 2.08
57 58 4.156664 CGATAGGGTCGGTGTTGTATAG 57.843 50.000 0.00 0.00 46.47 1.31
58 59 3.611057 CGATAGGGTCGGTGTTGTATAGC 60.611 52.174 0.00 0.00 46.47 2.97
59 60 1.563924 AGGGTCGGTGTTGTATAGCA 58.436 50.000 0.00 0.00 0.00 3.49
60 61 2.116238 AGGGTCGGTGTTGTATAGCAT 58.884 47.619 0.00 0.00 0.00 3.79
61 62 3.302161 AGGGTCGGTGTTGTATAGCATA 58.698 45.455 0.00 0.00 0.00 3.14
62 63 3.321111 AGGGTCGGTGTTGTATAGCATAG 59.679 47.826 0.00 0.00 0.00 2.23
63 64 3.554337 GGGTCGGTGTTGTATAGCATAGG 60.554 52.174 0.00 0.00 0.00 2.57
64 65 3.554337 GGTCGGTGTTGTATAGCATAGGG 60.554 52.174 0.00 0.00 0.00 3.53
65 66 2.631062 TCGGTGTTGTATAGCATAGGGG 59.369 50.000 0.00 0.00 0.00 4.79
66 67 2.289444 CGGTGTTGTATAGCATAGGGGG 60.289 54.545 0.00 0.00 0.00 5.40
67 68 2.709397 GGTGTTGTATAGCATAGGGGGT 59.291 50.000 0.00 0.00 0.00 4.95
68 69 3.244457 GGTGTTGTATAGCATAGGGGGTC 60.244 52.174 0.00 0.00 0.00 4.46
69 70 2.976882 TGTTGTATAGCATAGGGGGTCC 59.023 50.000 0.00 0.00 0.00 4.46
70 71 1.933021 TGTATAGCATAGGGGGTCCG 58.067 55.000 0.00 0.00 38.33 4.79
71 72 1.192428 GTATAGCATAGGGGGTCCGG 58.808 60.000 0.00 0.00 38.33 5.14
72 73 1.086565 TATAGCATAGGGGGTCCGGA 58.913 55.000 0.00 0.00 38.33 5.14
73 74 0.544595 ATAGCATAGGGGGTCCGGAC 60.545 60.000 27.04 27.04 38.33 4.79
74 75 1.951923 TAGCATAGGGGGTCCGGACA 61.952 60.000 34.40 15.51 38.33 4.02
75 76 2.808206 GCATAGGGGGTCCGGACAG 61.808 68.421 34.40 15.65 38.33 3.51
76 77 2.446036 ATAGGGGGTCCGGACAGC 60.446 66.667 34.40 18.84 38.33 4.40
77 78 4.791069 TAGGGGGTCCGGACAGCC 62.791 72.222 34.40 26.18 38.33 4.85
93 94 4.598257 CCGCATCGGGATGGATAC 57.402 61.111 10.44 0.00 44.15 2.24
94 95 1.446099 CCGCATCGGGATGGATACG 60.446 63.158 10.44 5.37 44.15 3.06
95 96 1.289066 CGCATCGGGATGGATACGT 59.711 57.895 10.44 0.00 39.16 3.57
96 97 1.008875 CGCATCGGGATGGATACGTG 61.009 60.000 10.44 0.00 39.16 4.49
97 98 1.291877 GCATCGGGATGGATACGTGC 61.292 60.000 10.44 0.00 44.40 5.34
98 99 1.008875 CATCGGGATGGATACGTGCG 61.009 60.000 0.00 0.00 46.43 5.34
99 100 2.154798 ATCGGGATGGATACGTGCGG 62.155 60.000 0.00 0.00 46.43 5.69
100 101 2.819550 GGGATGGATACGTGCGGT 59.180 61.111 0.00 0.00 46.43 5.68
101 102 1.145377 GGGATGGATACGTGCGGTT 59.855 57.895 0.00 0.00 46.43 4.44
102 103 0.463116 GGGATGGATACGTGCGGTTT 60.463 55.000 0.00 0.00 46.43 3.27
103 104 0.655733 GGATGGATACGTGCGGTTTG 59.344 55.000 0.00 0.00 42.51 2.93
104 105 1.647346 GATGGATACGTGCGGTTTGA 58.353 50.000 0.00 0.00 42.51 2.69
105 106 1.593006 GATGGATACGTGCGGTTTGAG 59.407 52.381 0.00 0.00 42.51 3.02
106 107 0.390603 TGGATACGTGCGGTTTGAGG 60.391 55.000 0.00 0.00 42.51 3.86
107 108 1.087771 GGATACGTGCGGTTTGAGGG 61.088 60.000 0.00 0.00 0.00 4.30
108 109 0.390735 GATACGTGCGGTTTGAGGGT 60.391 55.000 0.00 0.00 0.00 4.34
109 110 0.672401 ATACGTGCGGTTTGAGGGTG 60.672 55.000 0.00 0.00 0.00 4.61
110 111 2.030490 TACGTGCGGTTTGAGGGTGT 62.030 55.000 0.00 0.00 0.00 4.16
111 112 2.892334 CGTGCGGTTTGAGGGTGTG 61.892 63.158 0.00 0.00 0.00 3.82
112 113 1.525077 GTGCGGTTTGAGGGTGTGA 60.525 57.895 0.00 0.00 0.00 3.58
113 114 1.098712 GTGCGGTTTGAGGGTGTGAA 61.099 55.000 0.00 0.00 0.00 3.18
114 115 0.179004 TGCGGTTTGAGGGTGTGAAT 60.179 50.000 0.00 0.00 0.00 2.57
115 116 1.072489 TGCGGTTTGAGGGTGTGAATA 59.928 47.619 0.00 0.00 0.00 1.75
116 117 1.737793 GCGGTTTGAGGGTGTGAATAG 59.262 52.381 0.00 0.00 0.00 1.73
117 118 2.614481 GCGGTTTGAGGGTGTGAATAGA 60.614 50.000 0.00 0.00 0.00 1.98
118 119 3.262420 CGGTTTGAGGGTGTGAATAGAG 58.738 50.000 0.00 0.00 0.00 2.43
119 120 3.010420 GGTTTGAGGGTGTGAATAGAGC 58.990 50.000 0.00 0.00 0.00 4.09
120 121 3.559171 GGTTTGAGGGTGTGAATAGAGCA 60.559 47.826 0.00 0.00 0.00 4.26
121 122 4.072131 GTTTGAGGGTGTGAATAGAGCAA 58.928 43.478 0.00 0.00 0.00 3.91
122 123 4.574674 TTGAGGGTGTGAATAGAGCAAT 57.425 40.909 0.00 0.00 0.00 3.56
123 124 4.142609 TGAGGGTGTGAATAGAGCAATC 57.857 45.455 0.00 0.00 0.00 2.67
124 125 3.126831 GAGGGTGTGAATAGAGCAATCG 58.873 50.000 0.00 0.00 0.00 3.34
125 126 1.599542 GGGTGTGAATAGAGCAATCGC 59.400 52.381 0.00 0.00 38.99 4.58
126 127 2.279741 GGTGTGAATAGAGCAATCGCA 58.720 47.619 0.00 0.00 42.27 5.10
127 128 2.677836 GGTGTGAATAGAGCAATCGCAA 59.322 45.455 0.00 0.00 42.27 4.85
128 129 3.126858 GGTGTGAATAGAGCAATCGCAAA 59.873 43.478 0.00 0.00 42.27 3.68
129 130 4.379394 GGTGTGAATAGAGCAATCGCAAAA 60.379 41.667 0.00 0.00 42.27 2.44
130 131 5.335127 GTGTGAATAGAGCAATCGCAAAAT 58.665 37.500 0.00 0.00 42.27 1.82
131 132 5.801947 GTGTGAATAGAGCAATCGCAAAATT 59.198 36.000 0.00 0.00 42.27 1.82
132 133 6.308766 GTGTGAATAGAGCAATCGCAAAATTT 59.691 34.615 0.00 0.00 42.27 1.82
133 134 7.484641 GTGTGAATAGAGCAATCGCAAAATTTA 59.515 33.333 0.00 0.00 42.27 1.40
134 135 8.026026 TGTGAATAGAGCAATCGCAAAATTTAA 58.974 29.630 0.00 0.00 42.27 1.52
135 136 8.859156 GTGAATAGAGCAATCGCAAAATTTAAA 58.141 29.630 0.00 0.00 42.27 1.52
136 137 9.585099 TGAATAGAGCAATCGCAAAATTTAAAT 57.415 25.926 0.00 0.00 42.27 1.40
141 142 9.638239 AGAGCAATCGCAAAATTTAAATAAAGA 57.362 25.926 0.01 0.00 42.27 2.52
159 160 2.417719 AGAAATGTGGTCTCTGTTCGC 58.582 47.619 0.00 0.00 0.00 4.70
165 166 0.539669 TGGTCTCTGTTCGCAGGAGA 60.540 55.000 0.00 0.00 45.04 3.71
174 175 2.234300 TTCGCAGGAGAACGAAACTT 57.766 45.000 0.00 0.00 44.57 2.66
188 189 2.034558 CGAAACTTTGCACCACATCCTT 59.965 45.455 0.00 0.00 0.00 3.36
203 204 0.681564 TCCTTGTGGGTTGCACGTTT 60.682 50.000 0.00 0.00 36.25 3.60
212 213 1.599419 GGTTGCACGTTTTCTCGCATT 60.599 47.619 0.00 0.00 33.71 3.56
224 225 2.984562 TCTCGCATTACTTGGCATGAA 58.015 42.857 7.45 0.00 0.00 2.57
227 228 2.419673 TCGCATTACTTGGCATGAAGTG 59.580 45.455 7.45 3.85 36.80 3.16
242 243 2.299013 TGAAGTGCTATCTTGGTGTCGT 59.701 45.455 0.00 0.00 0.00 4.34
245 246 2.094494 AGTGCTATCTTGGTGTCGTCTG 60.094 50.000 0.00 0.00 0.00 3.51
248 249 0.535335 TATCTTGGTGTCGTCTGCCC 59.465 55.000 0.00 0.00 0.00 5.36
255 256 4.980805 GTCGTCTGCCCGTGCCAA 62.981 66.667 0.00 0.00 36.33 4.52
282 283 2.877691 GCACGGTGCCATTCTTCC 59.122 61.111 22.19 0.00 37.42 3.46
284 285 1.303236 CACGGTGCCATTCTTCCCA 60.303 57.895 0.00 0.00 0.00 4.37
293 294 1.005805 CCATTCTTCCCATGGTGGTCA 59.994 52.381 11.73 0.00 37.07 4.02
296 297 0.984230 TCTTCCCATGGTGGTCAGAC 59.016 55.000 11.73 0.00 35.17 3.51
301 302 4.760047 ATGGTGGTCAGACGCCGC 62.760 66.667 7.91 0.00 43.96 6.53
319 320 4.408821 TGCCGCTGCCCCTAACTG 62.409 66.667 0.00 0.00 36.33 3.16
323 324 2.124529 GCTGCCCCTAACTGCCTC 60.125 66.667 0.00 0.00 0.00 4.70
344 345 1.130373 CGCAAGGATTTTGCTTCGCTA 59.870 47.619 9.82 0.00 42.87 4.26
356 357 1.506493 CTTCGCTAGCCATCATCACC 58.494 55.000 9.66 0.00 0.00 4.02
387 388 0.239347 CTGGAAGCAAAGGAACGCAG 59.761 55.000 0.00 0.00 0.00 5.18
398 399 1.135257 AGGAACGCAGTCATCTTCGAG 60.135 52.381 0.00 0.00 45.00 4.04
403 404 2.094494 ACGCAGTCATCTTCGAGAATGT 60.094 45.455 8.44 0.00 29.74 2.71
407 408 3.681417 CAGTCATCTTCGAGAATGTGCAA 59.319 43.478 8.44 0.00 0.00 4.08
413 414 2.768253 TCGAGAATGTGCAACCATCT 57.232 45.000 0.00 0.00 34.05 2.90
416 417 2.094894 CGAGAATGTGCAACCATCTCAC 59.905 50.000 15.89 0.00 43.60 3.51
417 418 3.076621 GAGAATGTGCAACCATCTCACA 58.923 45.455 12.58 0.00 43.19 3.58
425 426 1.278985 CAACCATCTCACACCCAGCTA 59.721 52.381 0.00 0.00 0.00 3.32
429 430 2.106566 CATCTCACACCCAGCTACTCT 58.893 52.381 0.00 0.00 0.00 3.24
443 444 3.710677 AGCTACTCTCAAGCATCAAGGAT 59.289 43.478 0.00 0.00 42.62 3.24
451 452 2.028130 GCATCAAGGATGAAGCCCG 58.972 57.895 10.24 0.00 42.87 6.13
452 453 1.450531 GCATCAAGGATGAAGCCCGG 61.451 60.000 10.24 0.00 42.87 5.73
454 455 1.925285 ATCAAGGATGAAGCCCGGCA 61.925 55.000 13.15 0.00 39.49 5.69
455 456 1.678635 CAAGGATGAAGCCCGGCAA 60.679 57.895 13.15 0.00 0.00 4.52
485 486 2.275748 GGGGCCAAAGGACTAGCC 59.724 66.667 4.39 0.00 44.99 3.93
486 487 2.124695 GGGCCAAAGGACTAGCCG 60.125 66.667 4.39 0.00 46.75 5.52
504 505 0.600255 CGCGATCATCCCTGTAACCC 60.600 60.000 0.00 0.00 0.00 4.11
507 508 1.618837 CGATCATCCCTGTAACCCGAT 59.381 52.381 0.00 0.00 0.00 4.18
510 511 0.600255 CATCCCTGTAACCCGATCGC 60.600 60.000 10.32 0.00 0.00 4.58
511 512 0.759436 ATCCCTGTAACCCGATCGCT 60.759 55.000 10.32 0.00 0.00 4.93
512 513 0.974010 TCCCTGTAACCCGATCGCTT 60.974 55.000 10.32 5.55 0.00 4.68
516 517 2.417651 CCTGTAACCCGATCGCTTTGTA 60.418 50.000 10.32 0.00 0.00 2.41
517 518 2.601763 CTGTAACCCGATCGCTTTGTAC 59.398 50.000 10.32 7.53 0.00 2.90
519 520 3.443329 TGTAACCCGATCGCTTTGTACTA 59.557 43.478 10.32 0.00 0.00 1.82
539 540 1.377856 GGCTGAGCAACCCCTTCTC 60.378 63.158 6.82 0.00 0.00 2.87
542 543 1.151810 TGAGCAACCCCTTCTCCCT 60.152 57.895 0.00 0.00 0.00 4.20
549 550 1.306482 CCCCTTCTCCCTCTGCTCA 60.306 63.158 0.00 0.00 0.00 4.26
550 551 1.621672 CCCCTTCTCCCTCTGCTCAC 61.622 65.000 0.00 0.00 0.00 3.51
551 552 0.617249 CCCTTCTCCCTCTGCTCACT 60.617 60.000 0.00 0.00 0.00 3.41
555 556 0.972134 TCTCCCTCTGCTCACTTGTG 59.028 55.000 0.00 0.00 0.00 3.33
556 557 0.972134 CTCCCTCTGCTCACTTGTGA 59.028 55.000 3.32 3.32 0.00 3.58
561 562 1.342496 CTCTGCTCACTTGTGACCTCA 59.658 52.381 0.00 0.00 0.00 3.86
565 566 2.001812 CTCACTTGTGACCTCATCGG 57.998 55.000 0.00 0.00 39.35 4.18
571 572 2.441348 TGACCTCATCGGCGCCTA 60.441 61.111 26.68 15.56 35.61 3.93
577 578 0.238817 CTCATCGGCGCCTACTAGTC 59.761 60.000 26.68 0.00 0.00 2.59
578 579 0.464916 TCATCGGCGCCTACTAGTCA 60.465 55.000 26.68 0.00 0.00 3.41
585 601 1.093159 CGCCTACTAGTCAACGACCT 58.907 55.000 0.00 0.00 32.18 3.85
597 613 5.855045 AGTCAACGACCTTGTATTCTCTTT 58.145 37.500 0.00 0.00 32.18 2.52
599 615 6.766467 AGTCAACGACCTTGTATTCTCTTTTT 59.234 34.615 0.00 0.00 32.18 1.94
638 654 2.375766 GCCTCGAGCATATTCGCGG 61.376 63.158 6.99 2.14 45.66 6.46
667 683 8.576936 AAAAAGGTAAATGTATTCGCGAAAAA 57.423 26.923 27.23 14.43 0.00 1.94
690 706 7.461182 AAAAGGTAAATGCAACATACTAGCA 57.539 32.000 0.00 0.00 43.14 3.49
691 707 7.461182 AAAGGTAAATGCAACATACTAGCAA 57.539 32.000 0.00 0.00 42.15 3.91
692 708 7.461182 AAGGTAAATGCAACATACTAGCAAA 57.539 32.000 0.00 0.00 42.15 3.68
693 709 6.852664 AGGTAAATGCAACATACTAGCAAAC 58.147 36.000 0.00 0.00 42.15 2.93
694 710 6.033966 GGTAAATGCAACATACTAGCAAACC 58.966 40.000 0.00 0.00 42.15 3.27
695 711 5.720371 AAATGCAACATACTAGCAAACCA 57.280 34.783 0.00 0.00 42.15 3.67
696 712 4.701956 ATGCAACATACTAGCAAACCAC 57.298 40.909 0.00 0.00 42.15 4.16
697 713 2.817258 TGCAACATACTAGCAAACCACC 59.183 45.455 0.00 0.00 34.97 4.61
698 714 2.817258 GCAACATACTAGCAAACCACCA 59.183 45.455 0.00 0.00 0.00 4.17
699 715 3.365969 GCAACATACTAGCAAACCACCAC 60.366 47.826 0.00 0.00 0.00 4.16
700 716 3.780804 ACATACTAGCAAACCACCACA 57.219 42.857 0.00 0.00 0.00 4.17
701 717 4.093472 ACATACTAGCAAACCACCACAA 57.907 40.909 0.00 0.00 0.00 3.33
702 718 3.818773 ACATACTAGCAAACCACCACAAC 59.181 43.478 0.00 0.00 0.00 3.32
703 719 2.729028 ACTAGCAAACCACCACAACT 57.271 45.000 0.00 0.00 0.00 3.16
704 720 3.012934 ACTAGCAAACCACCACAACTT 57.987 42.857 0.00 0.00 0.00 2.66
705 721 2.687935 ACTAGCAAACCACCACAACTTG 59.312 45.455 0.00 0.00 0.00 3.16
706 722 1.555967 AGCAAACCACCACAACTTGT 58.444 45.000 0.00 0.00 0.00 3.16
707 723 1.899142 AGCAAACCACCACAACTTGTT 59.101 42.857 0.00 0.00 0.00 2.83
708 724 1.999024 GCAAACCACCACAACTTGTTG 59.001 47.619 11.44 11.44 0.00 3.33
709 725 2.611722 GCAAACCACCACAACTTGTTGT 60.612 45.455 12.73 12.73 35.14 3.32
710 726 3.249917 CAAACCACCACAACTTGTTGTC 58.750 45.455 15.24 0.00 31.86 3.18
711 727 2.507407 ACCACCACAACTTGTTGTCT 57.493 45.000 15.24 2.50 31.86 3.41
712 728 2.365582 ACCACCACAACTTGTTGTCTC 58.634 47.619 15.24 0.00 31.86 3.36
713 729 1.676006 CCACCACAACTTGTTGTCTCC 59.324 52.381 15.24 0.00 31.86 3.71
714 730 1.330521 CACCACAACTTGTTGTCTCCG 59.669 52.381 15.24 5.64 31.86 4.63
715 731 0.944386 CCACAACTTGTTGTCTCCGG 59.056 55.000 15.24 10.37 31.86 5.14
716 732 1.474320 CCACAACTTGTTGTCTCCGGA 60.474 52.381 15.24 2.93 31.86 5.14
717 733 2.494059 CACAACTTGTTGTCTCCGGAT 58.506 47.619 15.24 0.00 31.86 4.18
718 734 2.224079 CACAACTTGTTGTCTCCGGATG 59.776 50.000 15.24 0.00 31.86 3.51
719 735 1.197721 CAACTTGTTGTCTCCGGATGC 59.802 52.381 3.57 0.75 0.00 3.91
720 736 0.396435 ACTTGTTGTCTCCGGATGCA 59.604 50.000 3.57 3.98 0.00 3.96
721 737 1.003580 ACTTGTTGTCTCCGGATGCAT 59.996 47.619 3.57 0.00 0.00 3.96
722 738 1.399440 CTTGTTGTCTCCGGATGCATG 59.601 52.381 3.57 0.00 0.00 4.06
723 739 1.026182 TGTTGTCTCCGGATGCATGC 61.026 55.000 11.82 11.82 0.00 4.06
724 740 1.451927 TTGTCTCCGGATGCATGCC 60.452 57.895 16.68 8.69 0.00 4.40
725 741 1.913951 TTGTCTCCGGATGCATGCCT 61.914 55.000 16.68 4.84 0.00 4.75
726 742 1.890979 GTCTCCGGATGCATGCCTG 60.891 63.158 16.68 5.46 0.00 4.85
727 743 2.065789 TCTCCGGATGCATGCCTGA 61.066 57.895 16.68 8.61 0.00 3.86
728 744 1.890979 CTCCGGATGCATGCCTGAC 60.891 63.158 16.68 3.64 0.00 3.51
729 745 2.903855 CCGGATGCATGCCTGACC 60.904 66.667 16.68 11.81 0.00 4.02
730 746 2.124612 CGGATGCATGCCTGACCA 60.125 61.111 16.68 0.00 0.00 4.02
731 747 2.475466 CGGATGCATGCCTGACCAC 61.475 63.158 16.68 0.00 0.00 4.16
732 748 2.475466 GGATGCATGCCTGACCACG 61.475 63.158 16.68 0.00 0.00 4.94
733 749 3.117175 GATGCATGCCTGACCACGC 62.117 63.158 16.68 0.00 0.00 5.34
734 750 3.923782 ATGCATGCCTGACCACGCA 62.924 57.895 16.68 0.00 39.79 5.24
735 751 3.136123 GCATGCCTGACCACGCAT 61.136 61.111 6.36 1.56 46.47 4.73
737 753 3.136123 ATGCCTGACCACGCATGC 61.136 61.111 7.91 7.91 43.91 4.06
738 754 3.923782 ATGCCTGACCACGCATGCA 62.924 57.895 19.57 0.00 43.91 3.96
739 755 3.136123 GCCTGACCACGCATGCAT 61.136 61.111 19.57 0.00 30.98 3.96
751 767 0.741927 GCATGCATTGCCTTGGAACC 60.742 55.000 14.21 0.00 46.15 3.62
774 790 5.426240 CGAAGGATAATAAACGCGTTTACC 58.574 41.667 38.28 32.75 37.80 2.85
775 791 5.005586 CGAAGGATAATAAACGCGTTTACCA 59.994 40.000 38.28 29.55 37.80 3.25
776 792 5.723492 AGGATAATAAACGCGTTTACCAC 57.277 39.130 38.28 28.19 37.80 4.16
803 819 1.455773 TCCCGATCGATCAGCTGGT 60.456 57.895 24.40 6.50 0.00 4.00
812 828 4.386867 TCGATCAGCTGGTAAAGTAAGG 57.613 45.455 15.13 0.00 0.00 2.69
845 861 0.179040 TTTCTTCAAGGACGGGCGTT 60.179 50.000 0.00 0.00 0.00 4.84
904 920 0.676782 GTGCAATCAACCGCCCTACT 60.677 55.000 0.00 0.00 0.00 2.57
925 941 0.108186 CGTGTCTCCATTAGCTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
930 946 3.711190 TGTCTCCATTAGCTGCCATAAGA 59.289 43.478 0.00 0.00 0.00 2.10
932 948 3.326006 TCTCCATTAGCTGCCATAAGAGG 59.674 47.826 0.00 0.00 0.00 3.69
933 949 3.317406 TCCATTAGCTGCCATAAGAGGA 58.683 45.455 0.00 0.00 0.00 3.71
934 950 3.716353 TCCATTAGCTGCCATAAGAGGAA 59.284 43.478 0.00 0.00 0.00 3.36
935 951 4.070716 CCATTAGCTGCCATAAGAGGAAG 58.929 47.826 0.00 0.00 37.39 3.46
936 952 3.845781 TTAGCTGCCATAAGAGGAAGG 57.154 47.619 0.00 0.00 34.60 3.46
937 953 1.589414 AGCTGCCATAAGAGGAAGGT 58.411 50.000 0.00 0.00 40.28 3.50
938 954 1.488393 AGCTGCCATAAGAGGAAGGTC 59.512 52.381 0.00 0.00 41.23 3.85
939 955 1.210478 GCTGCCATAAGAGGAAGGTCA 59.790 52.381 0.00 0.00 34.60 4.02
940 956 2.356125 GCTGCCATAAGAGGAAGGTCAA 60.356 50.000 0.00 0.00 34.60 3.18
941 957 3.873801 GCTGCCATAAGAGGAAGGTCAAA 60.874 47.826 0.00 0.00 34.60 2.69
942 958 3.944015 CTGCCATAAGAGGAAGGTCAAAG 59.056 47.826 0.00 0.00 29.85 2.77
943 959 3.330701 TGCCATAAGAGGAAGGTCAAAGT 59.669 43.478 0.00 0.00 0.00 2.66
944 960 3.942115 GCCATAAGAGGAAGGTCAAAGTC 59.058 47.826 0.00 0.00 0.00 3.01
945 961 4.518249 CCATAAGAGGAAGGTCAAAGTCC 58.482 47.826 0.00 0.00 0.00 3.85
946 962 4.518249 CATAAGAGGAAGGTCAAAGTCCC 58.482 47.826 0.00 0.00 31.25 4.46
947 963 1.363246 AGAGGAAGGTCAAAGTCCCC 58.637 55.000 0.00 0.00 31.25 4.81
948 964 1.064825 GAGGAAGGTCAAAGTCCCCA 58.935 55.000 0.00 0.00 31.25 4.96
949 965 1.003696 GAGGAAGGTCAAAGTCCCCAG 59.996 57.143 0.00 0.00 31.25 4.45
950 966 0.609406 GGAAGGTCAAAGTCCCCAGC 60.609 60.000 0.00 0.00 0.00 4.85
951 967 0.609406 GAAGGTCAAAGTCCCCAGCC 60.609 60.000 0.00 0.00 0.00 4.85
952 968 2.035783 GGTCAAAGTCCCCAGCCC 59.964 66.667 0.00 0.00 0.00 5.19
953 969 2.035783 GTCAAAGTCCCCAGCCCC 59.964 66.667 0.00 0.00 0.00 5.80
978 994 3.358118 TGACGGGGTGATCGCATATATA 58.642 45.455 8.82 0.00 0.00 0.86
986 1002 6.291377 GGGTGATCGCATATATAACATCCAT 58.709 40.000 8.82 0.00 0.00 3.41
1227 1378 4.162690 CCACCAGGAGCCGGTAGC 62.163 72.222 1.90 0.00 44.25 3.58
1299 1462 1.514873 GCAGCAATCCGGCGAAAAG 60.515 57.895 9.30 0.00 39.27 2.27
1301 1464 2.046285 AGCAATCCGGCGAAAAGGG 61.046 57.895 9.30 0.00 39.27 3.95
1354 1520 2.579738 GAGGAGGAGGACGTTGGC 59.420 66.667 0.00 0.00 0.00 4.52
1436 1602 3.083349 TGGTGGAGATGGGGCTCG 61.083 66.667 0.00 0.00 35.74 5.03
1522 1688 2.439156 GCCATCCTCGCAGCCTTT 60.439 61.111 0.00 0.00 0.00 3.11
1568 1734 2.752238 CCTCGGAGTCTCCAGCGT 60.752 66.667 19.15 0.00 35.91 5.07
1590 1756 3.952811 GCCTCCGGCGTATCAATC 58.047 61.111 6.01 0.00 39.62 2.67
1591 1757 1.069090 GCCTCCGGCGTATCAATCA 59.931 57.895 6.01 0.00 39.62 2.57
1592 1758 0.531974 GCCTCCGGCGTATCAATCAA 60.532 55.000 6.01 0.00 39.62 2.57
1593 1759 1.878102 GCCTCCGGCGTATCAATCAAT 60.878 52.381 6.01 0.00 39.62 2.57
1604 1777 4.148174 CGTATCAATCAATACACGCGTGAT 59.852 41.667 42.94 27.78 32.66 3.06
1623 1796 0.454600 TGAGTGACTATTCGTCGGCC 59.545 55.000 0.00 0.00 45.87 6.13
1658 1843 1.488527 GTCGTCTGCTCGTGTTTCTT 58.511 50.000 0.00 0.00 0.00 2.52
1666 1851 2.223249 TGCTCGTGTTTCTTTTCTGTGC 60.223 45.455 0.00 0.00 0.00 4.57
1690 1883 0.842030 TCAAGATCCTGGCACCACCT 60.842 55.000 0.00 0.00 40.22 4.00
1720 1913 3.124636 CACATAAACCTGCGACTACCAAC 59.875 47.826 0.00 0.00 0.00 3.77
1773 1966 4.543692 CTTCAGTTTTGCATGAAGGTCAG 58.456 43.478 16.65 0.00 45.61 3.51
1839 2079 2.029380 TGTACGATTAGCAGTGCTGTGT 60.029 45.455 27.97 20.11 40.10 3.72
1889 2158 4.811557 ACTTTCTAATGTAATGAGCCGCTC 59.188 41.667 13.81 13.81 0.00 5.03
1896 2165 2.938451 TGTAATGAGCCGCTCTTCATTG 59.062 45.455 20.87 0.00 34.95 2.82
1905 2174 1.672881 CGCTCTTCATTGGTGGGATTC 59.327 52.381 0.00 0.00 0.00 2.52
1918 2187 6.884472 TGGTGGGATTCACTCTTTTCTATA 57.116 37.500 0.00 0.00 45.38 1.31
1921 2190 9.170890 TGGTGGGATTCACTCTTTTCTATATAT 57.829 33.333 0.00 0.00 45.38 0.86
1922 2191 9.660180 GGTGGGATTCACTCTTTTCTATATATC 57.340 37.037 0.00 0.00 45.38 1.63
1934 2203 8.613034 TCTTTTCTATATATCTACTCCCTCCGT 58.387 37.037 0.00 0.00 0.00 4.69
1938 2211 6.901857 TCTATATATCTACTCCCTCCGTCTCA 59.098 42.308 0.00 0.00 0.00 3.27
1943 2216 3.187699 CTCCCTCCGTCTCATCGCG 62.188 68.421 0.00 0.00 0.00 5.87
1944 2217 3.209812 CCCTCCGTCTCATCGCGA 61.210 66.667 13.09 13.09 0.00 5.87
1947 2220 0.457853 CCTCCGTCTCATCGCGAAAA 60.458 55.000 15.24 2.72 0.00 2.29
1950 2223 0.301687 CCGTCTCATCGCGAAAATGG 59.698 55.000 15.24 9.98 0.00 3.16
1953 2226 2.097202 CGTCTCATCGCGAAAATGGATC 60.097 50.000 15.24 0.59 0.00 3.36
1957 2230 5.234329 GTCTCATCGCGAAAATGGATCTAAA 59.766 40.000 15.24 0.00 0.00 1.85
1965 2238 6.145535 GCGAAAATGGATCTAAATGGATGTC 58.854 40.000 0.00 0.00 0.00 3.06
1967 2240 7.469181 GCGAAAATGGATCTAAATGGATGTCTT 60.469 37.037 0.00 0.00 0.00 3.01
1968 2241 8.072567 CGAAAATGGATCTAAATGGATGTCTTC 58.927 37.037 0.00 0.00 0.00 2.87
1969 2242 7.502120 AAATGGATCTAAATGGATGTCTTCG 57.498 36.000 0.00 0.00 0.00 3.79
1970 2243 5.869649 TGGATCTAAATGGATGTCTTCGA 57.130 39.130 0.00 0.00 0.00 3.71
1983 2256 8.025243 TGGATGTCTTCGAAACTAAAATACAC 57.975 34.615 0.00 0.00 0.00 2.90
1988 2309 9.403110 TGTCTTCGAAACTAAAATACACTAGAC 57.597 33.333 0.00 0.00 0.00 2.59
2009 2330 6.231211 AGACTATTTTGATCGGTTGTCTTGT 58.769 36.000 0.00 0.00 30.54 3.16
2036 2357 8.825667 TTGTTTTTATTTTAATCTGGGTCAGC 57.174 30.769 0.00 0.00 0.00 4.26
2046 2367 8.927675 TTTAATCTGGGTCAGCTTAAGTTTTA 57.072 30.769 4.02 0.00 34.85 1.52
2047 2368 8.561738 TTAATCTGGGTCAGCTTAAGTTTTAG 57.438 34.615 4.02 0.00 30.46 1.85
2048 2369 4.324267 TCTGGGTCAGCTTAAGTTTTAGC 58.676 43.478 4.02 2.36 37.66 3.09
2049 2370 4.072131 CTGGGTCAGCTTAAGTTTTAGCA 58.928 43.478 4.02 0.00 39.85 3.49
2053 2374 5.863935 GGGTCAGCTTAAGTTTTAGCAATTG 59.136 40.000 4.02 0.00 39.85 2.32
2091 2412 8.941977 TGTTTATTGTTTGTATAGTGTGCTAGG 58.058 33.333 0.00 0.00 0.00 3.02
2101 2422 1.302752 TGTGCTAGGCTGCTGTTGG 60.303 57.895 0.00 0.00 0.00 3.77
2102 2423 2.042831 GTGCTAGGCTGCTGTTGGG 61.043 63.158 0.00 0.00 0.00 4.12
2106 2427 2.859273 CTAGGCTGCTGTTGGGGACG 62.859 65.000 0.00 0.00 0.00 4.79
2184 2505 1.896660 TTTTGGCCTCGGTGTCTGC 60.897 57.895 3.32 0.00 0.00 4.26
2206 2527 0.328258 ATGTAGTTGTGTGAGCCCCC 59.672 55.000 0.00 0.00 0.00 5.40
2212 2533 1.073284 GTTGTGTGAGCCCCCTAAGAA 59.927 52.381 0.00 0.00 0.00 2.52
2216 2537 0.542333 GTGAGCCCCCTAAGAACTCC 59.458 60.000 0.00 0.00 0.00 3.85
2223 2544 2.308690 CCCCTAAGAACTCCTACTCCG 58.691 57.143 0.00 0.00 0.00 4.63
2250 2571 4.590647 TGAAACCATGGAATTGCTACCAAA 59.409 37.500 21.47 0.00 39.69 3.28
2252 2573 3.099141 ACCATGGAATTGCTACCAAAGG 58.901 45.455 21.47 0.00 39.69 3.11
2256 2577 3.161866 TGGAATTGCTACCAAAGGTTCC 58.838 45.455 0.00 0.00 37.80 3.62
2257 2578 2.163613 GGAATTGCTACCAAAGGTTCCG 59.836 50.000 0.00 0.00 37.09 4.30
2259 2580 2.642154 TTGCTACCAAAGGTTCCGAA 57.358 45.000 0.00 0.00 37.09 4.30
2261 2582 2.432444 TGCTACCAAAGGTTCCGAATG 58.568 47.619 0.00 0.00 37.09 2.67
2262 2583 2.224670 TGCTACCAAAGGTTCCGAATGT 60.225 45.455 0.00 0.00 37.09 2.71
2263 2584 2.817844 GCTACCAAAGGTTCCGAATGTT 59.182 45.455 0.00 0.00 37.09 2.71
2264 2585 3.365969 GCTACCAAAGGTTCCGAATGTTG 60.366 47.826 0.00 0.00 37.09 3.33
2274 2597 6.040247 AGGTTCCGAATGTTGAAAAGAAAAC 58.960 36.000 0.00 0.00 0.00 2.43
2284 2607 6.083630 TGTTGAAAAGAAAACTTCACTCACG 58.916 36.000 0.00 0.00 31.41 4.35
2285 2608 5.873179 TGAAAAGAAAACTTCACTCACGT 57.127 34.783 0.00 0.00 0.00 4.49
2287 2610 6.083630 TGAAAAGAAAACTTCACTCACGTTG 58.916 36.000 0.00 0.00 0.00 4.10
2291 2614 6.249035 AGAAAACTTCACTCACGTTGAAAA 57.751 33.333 3.01 0.00 0.00 2.29
2319 2642 9.955208 TCATAATTTTTGAAGGATGAATCGATG 57.045 29.630 0.00 0.00 0.00 3.84
2320 2643 9.188588 CATAATTTTTGAAGGATGAATCGATGG 57.811 33.333 0.00 0.00 0.00 3.51
2364 2695 3.889520 AAACAACGGGATACTCTCTCC 57.110 47.619 0.00 0.00 0.00 3.71
2370 2701 4.674281 ACGGGATACTCTCTCCATTTTC 57.326 45.455 0.00 0.00 34.24 2.29
2371 2702 4.290942 ACGGGATACTCTCTCCATTTTCT 58.709 43.478 0.00 0.00 34.24 2.52
2590 2921 7.358066 TCGACTTAGGATAAAACTAGTATGCG 58.642 38.462 0.00 0.00 0.00 4.73
2658 2989 6.148948 TGCACGGCATAAAAATATCAATAGC 58.851 36.000 0.00 0.00 31.71 2.97
2659 2990 6.148948 GCACGGCATAAAAATATCAATAGCA 58.851 36.000 0.00 0.00 0.00 3.49
2741 3072 4.162131 GGGTTAGACGAGGGGTTGTTTATA 59.838 45.833 0.00 0.00 0.00 0.98
2752 3083 7.929785 CGAGGGGTTGTTTATAAATTAGCTAGA 59.070 37.037 0.31 0.00 0.00 2.43
2838 3170 6.831727 TTTTTCTGCTCACACATGAAATTG 57.168 33.333 0.00 0.00 33.30 2.32
2846 3178 5.599732 CTCACACATGAAATTGGGTCAAAA 58.400 37.500 0.00 0.00 33.30 2.44
2847 3179 5.982356 TCACACATGAAATTGGGTCAAAAA 58.018 33.333 0.00 0.00 28.36 1.94
2906 3239 0.095935 CCATGAAACTCTTGCTCGCG 59.904 55.000 0.00 0.00 0.00 5.87
2973 3309 9.330063 CACTTGCTCCATTAATAACTATGAGAA 57.670 33.333 0.00 0.00 0.00 2.87
3079 3448 7.808381 TGCGAATTTAAAAACGTTCATGGATTA 59.192 29.630 0.00 0.00 0.00 1.75
3108 3477 8.625786 AAATGCAAAATGGAAAAAGCTTCTAT 57.374 26.923 0.00 0.00 0.00 1.98
3259 3629 9.982651 TCATGGATTAAAATTTGTAAAACGGAA 57.017 25.926 0.00 0.00 0.00 4.30
3306 3676 5.006358 CACTTAACCAACTACACACACTCAC 59.994 44.000 0.00 0.00 0.00 3.51
3337 3710 1.858739 TTAGCGACCCAAGCCCCAAT 61.859 55.000 0.00 0.00 34.64 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.374184 CGGGCCATAATTTTCCAGTGA 58.626 47.619 4.39 0.00 0.00 3.41
1 2 1.408702 CCGGGCCATAATTTTCCAGTG 59.591 52.381 4.39 0.00 0.00 3.66
2 3 1.286553 TCCGGGCCATAATTTTCCAGT 59.713 47.619 4.39 0.00 0.00 4.00
3 4 1.681264 GTCCGGGCCATAATTTTCCAG 59.319 52.381 4.39 0.00 0.00 3.86
4 5 1.286553 AGTCCGGGCCATAATTTTCCA 59.713 47.619 0.08 0.00 0.00 3.53
5 6 1.681264 CAGTCCGGGCCATAATTTTCC 59.319 52.381 0.08 0.00 0.00 3.13
6 7 1.067060 GCAGTCCGGGCCATAATTTTC 59.933 52.381 0.08 0.00 0.00 2.29
7 8 1.111277 GCAGTCCGGGCCATAATTTT 58.889 50.000 0.08 0.00 0.00 1.82
8 9 0.258774 AGCAGTCCGGGCCATAATTT 59.741 50.000 0.08 0.00 0.00 1.82
9 10 0.179018 GAGCAGTCCGGGCCATAATT 60.179 55.000 0.08 0.00 0.00 1.40
10 11 1.451936 GAGCAGTCCGGGCCATAAT 59.548 57.895 0.08 0.00 0.00 1.28
11 12 2.742116 GGAGCAGTCCGGGCCATAA 61.742 63.158 0.08 0.00 31.37 1.90
12 13 3.161450 GGAGCAGTCCGGGCCATA 61.161 66.667 0.08 0.00 31.37 2.74
20 21 2.227089 ATCGGTTCACGGAGCAGTCC 62.227 60.000 0.00 0.00 44.45 3.85
21 22 0.454600 TATCGGTTCACGGAGCAGTC 59.545 55.000 0.00 0.00 44.45 3.51
22 23 0.456221 CTATCGGTTCACGGAGCAGT 59.544 55.000 0.00 0.00 44.45 4.40
23 24 0.249073 CCTATCGGTTCACGGAGCAG 60.249 60.000 0.00 0.00 44.45 4.24
24 25 1.672854 CCCTATCGGTTCACGGAGCA 61.673 60.000 0.00 0.00 44.45 4.26
25 26 1.067582 CCCTATCGGTTCACGGAGC 59.932 63.158 0.00 0.00 44.45 4.70
26 27 2.501492 ACCCTATCGGTTCACGGAG 58.499 57.895 0.00 0.00 45.36 4.63
27 28 4.770540 ACCCTATCGGTTCACGGA 57.229 55.556 0.00 0.00 45.36 4.69
37 38 3.319972 TGCTATACAACACCGACCCTATC 59.680 47.826 0.00 0.00 0.00 2.08
38 39 3.302161 TGCTATACAACACCGACCCTAT 58.698 45.455 0.00 0.00 0.00 2.57
39 40 2.737544 TGCTATACAACACCGACCCTA 58.262 47.619 0.00 0.00 0.00 3.53
40 41 1.563924 TGCTATACAACACCGACCCT 58.436 50.000 0.00 0.00 0.00 4.34
41 42 2.614829 ATGCTATACAACACCGACCC 57.385 50.000 0.00 0.00 0.00 4.46
42 43 3.554337 CCCTATGCTATACAACACCGACC 60.554 52.174 0.00 0.00 0.00 4.79
43 44 3.554337 CCCCTATGCTATACAACACCGAC 60.554 52.174 0.00 0.00 0.00 4.79
44 45 2.631062 CCCCTATGCTATACAACACCGA 59.369 50.000 0.00 0.00 0.00 4.69
45 46 2.289444 CCCCCTATGCTATACAACACCG 60.289 54.545 0.00 0.00 0.00 4.94
46 47 2.709397 ACCCCCTATGCTATACAACACC 59.291 50.000 0.00 0.00 0.00 4.16
47 48 3.244457 GGACCCCCTATGCTATACAACAC 60.244 52.174 0.00 0.00 0.00 3.32
48 49 2.976882 GGACCCCCTATGCTATACAACA 59.023 50.000 0.00 0.00 0.00 3.33
49 50 2.028385 CGGACCCCCTATGCTATACAAC 60.028 54.545 0.00 0.00 0.00 3.32
50 51 2.253610 CGGACCCCCTATGCTATACAA 58.746 52.381 0.00 0.00 0.00 2.41
51 52 1.551560 CCGGACCCCCTATGCTATACA 60.552 57.143 0.00 0.00 0.00 2.29
52 53 1.192428 CCGGACCCCCTATGCTATAC 58.808 60.000 0.00 0.00 0.00 1.47
53 54 1.086565 TCCGGACCCCCTATGCTATA 58.913 55.000 0.00 0.00 0.00 1.31
54 55 0.544595 GTCCGGACCCCCTATGCTAT 60.545 60.000 24.75 0.00 0.00 2.97
55 56 1.152398 GTCCGGACCCCCTATGCTA 60.152 63.158 24.75 0.00 0.00 3.49
56 57 2.446036 GTCCGGACCCCCTATGCT 60.446 66.667 24.75 0.00 0.00 3.79
57 58 2.766651 TGTCCGGACCCCCTATGC 60.767 66.667 31.19 3.89 0.00 3.14
58 59 2.808206 GCTGTCCGGACCCCCTATG 61.808 68.421 31.19 13.05 0.00 2.23
59 60 2.446036 GCTGTCCGGACCCCCTAT 60.446 66.667 31.19 0.00 0.00 2.57
60 61 4.791069 GGCTGTCCGGACCCCCTA 62.791 72.222 31.19 11.80 0.00 3.53
70 71 4.241555 ATCCCGATGCGGCTGTCC 62.242 66.667 0.00 0.00 46.86 4.02
71 72 2.969238 CATCCCGATGCGGCTGTC 60.969 66.667 0.00 0.00 46.86 3.51
72 73 4.552365 CCATCCCGATGCGGCTGT 62.552 66.667 0.00 0.00 46.86 4.40
73 74 2.171209 TATCCATCCCGATGCGGCTG 62.171 60.000 0.00 0.46 46.86 4.85
74 75 1.913262 TATCCATCCCGATGCGGCT 60.913 57.895 0.00 0.00 46.86 5.52
75 76 1.741770 GTATCCATCCCGATGCGGC 60.742 63.158 0.00 0.00 46.86 6.53
77 78 4.169102 CGTATCCATCCCGATGCG 57.831 61.111 0.00 0.00 40.95 4.73
78 79 1.291877 GCACGTATCCATCCCGATGC 61.292 60.000 0.00 0.00 37.49 3.91
79 80 1.008875 CGCACGTATCCATCCCGATG 61.009 60.000 0.00 0.00 38.51 3.84
80 81 1.289066 CGCACGTATCCATCCCGAT 59.711 57.895 0.00 0.00 0.00 4.18
81 82 2.725641 CGCACGTATCCATCCCGA 59.274 61.111 0.00 0.00 0.00 5.14
82 83 2.355837 CCGCACGTATCCATCCCG 60.356 66.667 0.00 0.00 0.00 5.14
83 84 0.463116 AAACCGCACGTATCCATCCC 60.463 55.000 0.00 0.00 0.00 3.85
84 85 0.655733 CAAACCGCACGTATCCATCC 59.344 55.000 0.00 0.00 0.00 3.51
85 86 1.593006 CTCAAACCGCACGTATCCATC 59.407 52.381 0.00 0.00 0.00 3.51
86 87 1.651987 CTCAAACCGCACGTATCCAT 58.348 50.000 0.00 0.00 0.00 3.41
87 88 0.390603 CCTCAAACCGCACGTATCCA 60.391 55.000 0.00 0.00 0.00 3.41
88 89 1.087771 CCCTCAAACCGCACGTATCC 61.088 60.000 0.00 0.00 0.00 2.59
89 90 0.390735 ACCCTCAAACCGCACGTATC 60.391 55.000 0.00 0.00 0.00 2.24
90 91 0.672401 CACCCTCAAACCGCACGTAT 60.672 55.000 0.00 0.00 0.00 3.06
91 92 1.301087 CACCCTCAAACCGCACGTA 60.301 57.895 0.00 0.00 0.00 3.57
92 93 2.590575 CACCCTCAAACCGCACGT 60.591 61.111 0.00 0.00 0.00 4.49
93 94 2.590575 ACACCCTCAAACCGCACG 60.591 61.111 0.00 0.00 0.00 5.34
94 95 1.098712 TTCACACCCTCAAACCGCAC 61.099 55.000 0.00 0.00 0.00 5.34
95 96 0.179004 ATTCACACCCTCAAACCGCA 60.179 50.000 0.00 0.00 0.00 5.69
96 97 1.737793 CTATTCACACCCTCAAACCGC 59.262 52.381 0.00 0.00 0.00 5.68
97 98 3.262420 CTCTATTCACACCCTCAAACCG 58.738 50.000 0.00 0.00 0.00 4.44
98 99 3.010420 GCTCTATTCACACCCTCAAACC 58.990 50.000 0.00 0.00 0.00 3.27
99 100 3.674997 TGCTCTATTCACACCCTCAAAC 58.325 45.455 0.00 0.00 0.00 2.93
100 101 4.365514 TTGCTCTATTCACACCCTCAAA 57.634 40.909 0.00 0.00 0.00 2.69
101 102 4.517285 GATTGCTCTATTCACACCCTCAA 58.483 43.478 0.00 0.00 0.00 3.02
102 103 3.430790 CGATTGCTCTATTCACACCCTCA 60.431 47.826 0.00 0.00 0.00 3.86
103 104 3.126831 CGATTGCTCTATTCACACCCTC 58.873 50.000 0.00 0.00 0.00 4.30
104 105 2.743183 GCGATTGCTCTATTCACACCCT 60.743 50.000 0.00 0.00 38.39 4.34
105 106 1.599542 GCGATTGCTCTATTCACACCC 59.400 52.381 0.00 0.00 38.39 4.61
106 107 2.279741 TGCGATTGCTCTATTCACACC 58.720 47.619 6.47 0.00 43.34 4.16
107 108 4.340894 TTTGCGATTGCTCTATTCACAC 57.659 40.909 6.47 0.00 43.34 3.82
108 109 5.565592 ATTTTGCGATTGCTCTATTCACA 57.434 34.783 6.47 0.00 43.34 3.58
109 110 6.875926 AAATTTTGCGATTGCTCTATTCAC 57.124 33.333 6.47 0.00 43.34 3.18
110 111 8.978564 TTTAAATTTTGCGATTGCTCTATTCA 57.021 26.923 6.47 0.00 43.34 2.57
115 116 9.638239 TCTTTATTTAAATTTTGCGATTGCTCT 57.362 25.926 5.91 0.00 43.34 4.09
132 133 8.717821 CGAACAGAGACCACATTTCTTTATTTA 58.282 33.333 0.00 0.00 0.00 1.40
133 134 7.584987 CGAACAGAGACCACATTTCTTTATTT 58.415 34.615 0.00 0.00 0.00 1.40
134 135 6.348540 GCGAACAGAGACCACATTTCTTTATT 60.349 38.462 0.00 0.00 0.00 1.40
135 136 5.122396 GCGAACAGAGACCACATTTCTTTAT 59.878 40.000 0.00 0.00 0.00 1.40
136 137 4.451096 GCGAACAGAGACCACATTTCTTTA 59.549 41.667 0.00 0.00 0.00 1.85
137 138 3.251004 GCGAACAGAGACCACATTTCTTT 59.749 43.478 0.00 0.00 0.00 2.52
138 139 2.808543 GCGAACAGAGACCACATTTCTT 59.191 45.455 0.00 0.00 0.00 2.52
139 140 2.224281 TGCGAACAGAGACCACATTTCT 60.224 45.455 0.00 0.00 0.00 2.52
140 141 2.143122 TGCGAACAGAGACCACATTTC 58.857 47.619 0.00 0.00 0.00 2.17
141 142 2.254546 TGCGAACAGAGACCACATTT 57.745 45.000 0.00 0.00 0.00 2.32
155 156 2.234300 AAGTTTCGTTCTCCTGCGAA 57.766 45.000 0.00 0.00 43.98 4.70
159 160 2.287009 GGTGCAAAGTTTCGTTCTCCTG 60.287 50.000 0.00 0.00 0.00 3.86
165 166 2.223711 GGATGTGGTGCAAAGTTTCGTT 60.224 45.455 0.00 0.00 0.00 3.85
167 168 1.608590 AGGATGTGGTGCAAAGTTTCG 59.391 47.619 0.00 0.00 0.00 3.46
188 189 0.736053 GAGAAAACGTGCAACCCACA 59.264 50.000 0.00 0.00 44.91 4.17
191 192 1.370051 GCGAGAAAACGTGCAACCC 60.370 57.895 0.00 0.00 35.59 4.11
194 195 2.546368 AGTAATGCGAGAAAACGTGCAA 59.454 40.909 0.00 0.00 41.22 4.08
197 198 3.479006 CCAAGTAATGCGAGAAAACGTG 58.521 45.455 0.00 0.00 35.59 4.49
198 199 2.095919 GCCAAGTAATGCGAGAAAACGT 60.096 45.455 0.00 0.00 35.59 3.99
203 204 2.984562 TCATGCCAAGTAATGCGAGAA 58.015 42.857 0.00 0.00 0.00 2.87
224 225 2.094494 CAGACGACACCAAGATAGCACT 60.094 50.000 0.00 0.00 0.00 4.40
227 228 1.281899 GCAGACGACACCAAGATAGC 58.718 55.000 0.00 0.00 0.00 2.97
230 231 1.296715 GGGCAGACGACACCAAGAT 59.703 57.895 0.00 0.00 0.00 2.40
233 234 3.542676 ACGGGCAGACGACACCAA 61.543 61.111 0.00 0.00 37.61 3.67
242 243 4.947147 GGTGTTGGCACGGGCAGA 62.947 66.667 13.89 0.00 46.13 4.26
266 267 0.680921 ATGGGAAGAATGGCACCGTG 60.681 55.000 0.00 0.00 0.00 4.94
268 269 1.386525 CCATGGGAAGAATGGCACCG 61.387 60.000 2.85 0.00 38.32 4.94
282 283 2.436646 GGCGTCTGACCACCATGG 60.437 66.667 11.19 11.19 45.02 3.66
284 285 4.760047 GCGGCGTCTGACCACCAT 62.760 66.667 9.37 0.00 0.00 3.55
301 302 4.101448 AGTTAGGGGCAGCGGCAG 62.101 66.667 11.88 0.00 43.71 4.85
305 306 4.101448 AGGCAGTTAGGGGCAGCG 62.101 66.667 0.00 0.00 0.00 5.18
308 309 3.399181 CGGAGGCAGTTAGGGGCA 61.399 66.667 0.00 0.00 0.00 5.36
319 320 1.153765 GCAAAATCCTTGCGGAGGC 60.154 57.895 1.16 0.00 45.87 4.70
341 342 1.963338 GGCGGTGATGATGGCTAGC 60.963 63.158 6.04 6.04 0.00 3.42
344 345 2.191375 CAGGCGGTGATGATGGCT 59.809 61.111 0.00 0.00 39.32 4.75
356 357 4.113815 TTCCAGATGGCCCAGGCG 62.114 66.667 0.00 0.00 43.06 5.52
387 388 3.181516 GGTTGCACATTCTCGAAGATGAC 60.182 47.826 12.99 6.60 33.89 3.06
398 399 2.095059 GGTGTGAGATGGTTGCACATTC 60.095 50.000 0.00 0.00 43.51 2.67
403 404 0.250858 CTGGGTGTGAGATGGTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
407 408 0.905357 GTAGCTGGGTGTGAGATGGT 59.095 55.000 0.00 0.00 0.00 3.55
413 414 1.895798 CTTGAGAGTAGCTGGGTGTGA 59.104 52.381 0.00 0.00 0.00 3.58
416 417 0.610174 TGCTTGAGAGTAGCTGGGTG 59.390 55.000 0.00 0.00 39.38 4.61
417 418 1.484240 GATGCTTGAGAGTAGCTGGGT 59.516 52.381 0.00 0.00 39.38 4.51
425 426 4.515361 CTTCATCCTTGATGCTTGAGAGT 58.485 43.478 0.00 0.00 39.63 3.24
429 430 2.372264 GGCTTCATCCTTGATGCTTGA 58.628 47.619 11.92 0.00 46.75 3.02
443 444 4.757355 CCCCATTGCCGGGCTTCA 62.757 66.667 21.46 4.49 45.90 3.02
464 465 2.876368 CTAGTCCTTTGGCCCCAGCG 62.876 65.000 0.00 0.00 41.24 5.18
467 468 2.612493 GGCTAGTCCTTTGGCCCCA 61.612 63.158 0.00 0.00 38.77 4.96
470 471 2.824489 GCGGCTAGTCCTTTGGCC 60.824 66.667 0.00 0.00 41.02 5.36
473 474 0.179111 TGATCGCGGCTAGTCCTTTG 60.179 55.000 6.13 0.00 0.00 2.77
474 475 0.753262 ATGATCGCGGCTAGTCCTTT 59.247 50.000 6.13 0.00 0.00 3.11
475 476 0.315568 GATGATCGCGGCTAGTCCTT 59.684 55.000 6.13 0.00 0.00 3.36
480 481 1.080230 CAGGGATGATCGCGGCTAG 60.080 63.158 6.13 0.00 34.19 3.42
485 486 0.600255 GGGTTACAGGGATGATCGCG 60.600 60.000 0.00 0.00 34.19 5.87
486 487 0.600255 CGGGTTACAGGGATGATCGC 60.600 60.000 0.65 0.65 0.00 4.58
504 505 1.067212 AGCCCTAGTACAAAGCGATCG 59.933 52.381 11.69 11.69 0.00 3.69
507 508 1.476891 CTCAGCCCTAGTACAAAGCGA 59.523 52.381 0.00 0.00 0.00 4.93
510 511 3.003480 GTTGCTCAGCCCTAGTACAAAG 58.997 50.000 0.00 0.00 0.00 2.77
511 512 2.290071 GGTTGCTCAGCCCTAGTACAAA 60.290 50.000 0.00 0.00 0.00 2.83
512 513 1.278127 GGTTGCTCAGCCCTAGTACAA 59.722 52.381 0.00 0.00 0.00 2.41
539 540 3.223661 GTCACAAGTGAGCAGAGGG 57.776 57.895 2.62 0.00 40.75 4.30
549 550 1.079819 CGCCGATGAGGTCACAAGT 60.080 57.895 0.00 0.00 43.70 3.16
550 551 2.456119 GCGCCGATGAGGTCACAAG 61.456 63.158 0.00 0.00 43.70 3.16
551 552 2.434185 GCGCCGATGAGGTCACAA 60.434 61.111 0.00 0.00 43.70 3.33
555 556 1.170919 TAGTAGGCGCCGATGAGGTC 61.171 60.000 23.20 2.13 43.70 3.85
556 557 1.152819 TAGTAGGCGCCGATGAGGT 60.153 57.895 23.20 3.61 43.70 3.85
561 562 0.384669 GTTGACTAGTAGGCGCCGAT 59.615 55.000 23.20 13.73 0.00 4.18
565 566 0.525029 GGTCGTTGACTAGTAGGCGC 60.525 60.000 0.00 0.00 32.47 6.53
571 572 5.711036 AGAGAATACAAGGTCGTTGACTAGT 59.289 40.000 12.07 0.00 38.60 2.57
577 578 6.204882 AGGAAAAAGAGAATACAAGGTCGTTG 59.795 38.462 3.73 3.73 42.48 4.10
578 579 6.296803 AGGAAAAAGAGAATACAAGGTCGTT 58.703 36.000 0.00 0.00 0.00 3.85
597 613 8.055181 AGGCTGTATCTTTTCATTGATAGGAAA 58.945 33.333 0.00 0.00 32.68 3.13
599 615 7.141758 AGGCTGTATCTTTTCATTGATAGGA 57.858 36.000 0.00 0.00 0.00 2.94
610 626 3.550437 ATGCTCGAGGCTGTATCTTTT 57.450 42.857 15.58 0.00 42.39 2.27
619 635 1.372251 CGCGAATATGCTCGAGGCT 60.372 57.895 15.58 0.00 41.44 4.58
620 636 3.150895 CGCGAATATGCTCGAGGC 58.849 61.111 15.58 7.24 41.44 4.70
665 681 7.891561 TGCTAGTATGTTGCATTTACCTTTTT 58.108 30.769 0.00 0.00 0.00 1.94
666 682 7.461182 TGCTAGTATGTTGCATTTACCTTTT 57.539 32.000 0.00 0.00 0.00 2.27
667 683 7.461182 TTGCTAGTATGTTGCATTTACCTTT 57.539 32.000 0.00 0.00 36.55 3.11
668 684 7.312899 GTTTGCTAGTATGTTGCATTTACCTT 58.687 34.615 0.00 0.00 36.55 3.50
669 685 6.127730 GGTTTGCTAGTATGTTGCATTTACCT 60.128 38.462 0.00 0.00 36.55 3.08
670 686 6.033966 GGTTTGCTAGTATGTTGCATTTACC 58.966 40.000 0.00 0.00 36.55 2.85
671 687 6.526674 GTGGTTTGCTAGTATGTTGCATTTAC 59.473 38.462 0.00 0.00 36.55 2.01
672 688 6.349777 GGTGGTTTGCTAGTATGTTGCATTTA 60.350 38.462 0.00 0.00 36.55 1.40
673 689 5.469479 GTGGTTTGCTAGTATGTTGCATTT 58.531 37.500 0.00 0.00 36.55 2.32
674 690 4.082245 GGTGGTTTGCTAGTATGTTGCATT 60.082 41.667 0.00 0.00 36.55 3.56
675 691 3.443681 GGTGGTTTGCTAGTATGTTGCAT 59.556 43.478 0.00 0.00 36.55 3.96
676 692 2.817258 GGTGGTTTGCTAGTATGTTGCA 59.183 45.455 0.00 0.00 34.69 4.08
677 693 2.817258 TGGTGGTTTGCTAGTATGTTGC 59.183 45.455 0.00 0.00 0.00 4.17
678 694 3.818210 TGTGGTGGTTTGCTAGTATGTTG 59.182 43.478 0.00 0.00 0.00 3.33
679 695 4.093472 TGTGGTGGTTTGCTAGTATGTT 57.907 40.909 0.00 0.00 0.00 2.71
680 696 3.780804 TGTGGTGGTTTGCTAGTATGT 57.219 42.857 0.00 0.00 0.00 2.29
681 697 4.072131 AGTTGTGGTGGTTTGCTAGTATG 58.928 43.478 0.00 0.00 0.00 2.39
682 698 4.367039 AGTTGTGGTGGTTTGCTAGTAT 57.633 40.909 0.00 0.00 0.00 2.12
683 699 3.849563 AGTTGTGGTGGTTTGCTAGTA 57.150 42.857 0.00 0.00 0.00 1.82
684 700 2.687935 CAAGTTGTGGTGGTTTGCTAGT 59.312 45.455 0.00 0.00 0.00 2.57
685 701 2.687935 ACAAGTTGTGGTGGTTTGCTAG 59.312 45.455 7.96 0.00 0.00 3.42
686 702 2.729194 ACAAGTTGTGGTGGTTTGCTA 58.271 42.857 7.96 0.00 0.00 3.49
687 703 1.555967 ACAAGTTGTGGTGGTTTGCT 58.444 45.000 7.96 0.00 0.00 3.91
688 704 1.999024 CAACAAGTTGTGGTGGTTTGC 59.001 47.619 9.79 0.00 41.68 3.68
699 715 1.197721 GCATCCGGAGACAACAAGTTG 59.802 52.381 11.34 11.16 45.58 3.16
700 716 1.202758 TGCATCCGGAGACAACAAGTT 60.203 47.619 11.34 0.00 0.00 2.66
701 717 0.396435 TGCATCCGGAGACAACAAGT 59.604 50.000 11.34 0.00 0.00 3.16
702 718 1.399440 CATGCATCCGGAGACAACAAG 59.601 52.381 11.34 0.00 0.00 3.16
703 719 1.452110 CATGCATCCGGAGACAACAA 58.548 50.000 11.34 0.00 0.00 2.83
704 720 1.026182 GCATGCATCCGGAGACAACA 61.026 55.000 14.21 3.58 0.00 3.33
705 721 1.718757 GGCATGCATCCGGAGACAAC 61.719 60.000 21.36 7.26 0.00 3.32
706 722 1.451927 GGCATGCATCCGGAGACAA 60.452 57.895 21.36 0.00 0.00 3.18
707 723 2.190313 GGCATGCATCCGGAGACA 59.810 61.111 21.36 11.30 0.00 3.41
708 724 1.890979 CAGGCATGCATCCGGAGAC 60.891 63.158 21.36 4.71 0.00 3.36
709 725 2.065789 TCAGGCATGCATCCGGAGA 61.066 57.895 21.36 2.19 0.00 3.71
710 726 1.890979 GTCAGGCATGCATCCGGAG 60.891 63.158 21.36 3.17 0.00 4.63
711 727 2.190313 GTCAGGCATGCATCCGGA 59.810 61.111 21.36 6.61 0.00 5.14
712 728 2.903855 GGTCAGGCATGCATCCGG 60.904 66.667 21.36 0.00 0.00 5.14
713 729 2.124612 TGGTCAGGCATGCATCCG 60.125 61.111 21.36 0.98 0.00 4.18
714 730 2.475466 CGTGGTCAGGCATGCATCC 61.475 63.158 21.36 11.71 0.00 3.51
715 731 3.104766 CGTGGTCAGGCATGCATC 58.895 61.111 21.36 2.42 0.00 3.91
716 732 3.136123 GCGTGGTCAGGCATGCAT 61.136 61.111 21.36 10.32 41.43 3.96
717 733 4.639906 TGCGTGGTCAGGCATGCA 62.640 61.111 21.36 0.00 45.78 3.96
722 738 2.703798 AATGCATGCGTGGTCAGGC 61.704 57.895 14.40 8.50 43.30 4.85
723 739 1.138036 CAATGCATGCGTGGTCAGG 59.862 57.895 14.40 0.00 0.00 3.86
724 740 1.515519 GCAATGCATGCGTGGTCAG 60.516 57.895 14.40 2.89 46.87 3.51
725 741 2.567569 GCAATGCATGCGTGGTCA 59.432 55.556 14.40 0.00 46.87 4.02
733 749 0.458889 CGGTTCCAAGGCAATGCATG 60.459 55.000 7.79 5.38 0.00 4.06
734 750 0.611618 TCGGTTCCAAGGCAATGCAT 60.612 50.000 7.79 0.00 0.00 3.96
735 751 0.825425 TTCGGTTCCAAGGCAATGCA 60.825 50.000 7.79 0.00 0.00 3.96
736 752 0.109132 CTTCGGTTCCAAGGCAATGC 60.109 55.000 0.00 0.00 0.00 3.56
737 753 0.527565 CCTTCGGTTCCAAGGCAATG 59.472 55.000 6.97 0.00 34.21 2.82
738 754 0.404040 TCCTTCGGTTCCAAGGCAAT 59.596 50.000 12.13 0.00 40.43 3.56
739 755 0.404040 ATCCTTCGGTTCCAAGGCAA 59.596 50.000 12.13 1.96 40.43 4.52
751 767 5.005586 TGGTAAACGCGTTTATTATCCTTCG 59.994 40.000 37.99 0.00 37.37 3.79
756 772 6.536688 ACAAGTGGTAAACGCGTTTATTATC 58.463 36.000 37.99 27.17 37.37 1.75
769 785 2.967201 TCGGGAGAGAACAAGTGGTAAA 59.033 45.455 0.00 0.00 0.00 2.01
770 786 2.600790 TCGGGAGAGAACAAGTGGTAA 58.399 47.619 0.00 0.00 0.00 2.85
771 787 2.297698 TCGGGAGAGAACAAGTGGTA 57.702 50.000 0.00 0.00 0.00 3.25
772 788 1.550976 GATCGGGAGAGAACAAGTGGT 59.449 52.381 0.00 0.00 45.48 4.16
773 789 1.469940 CGATCGGGAGAGAACAAGTGG 60.470 57.143 7.38 0.00 45.48 4.00
774 790 1.472878 TCGATCGGGAGAGAACAAGTG 59.527 52.381 16.41 0.00 45.48 3.16
775 791 1.835494 TCGATCGGGAGAGAACAAGT 58.165 50.000 16.41 0.00 45.48 3.16
776 792 2.359214 TGATCGATCGGGAGAGAACAAG 59.641 50.000 20.03 0.00 45.48 3.16
837 853 3.906879 GCCCACAAAAACGCCCGT 61.907 61.111 0.00 0.00 0.00 5.28
845 861 1.600636 CTCGCTCCTGCCCACAAAA 60.601 57.895 0.00 0.00 35.36 2.44
925 941 3.523972 GGGGACTTTGACCTTCCTCTTAT 59.476 47.826 0.00 0.00 0.00 1.73
930 946 1.068121 CTGGGGACTTTGACCTTCCT 58.932 55.000 0.00 0.00 0.00 3.36
932 948 0.609406 GGCTGGGGACTTTGACCTTC 60.609 60.000 0.00 0.00 0.00 3.46
933 949 1.460699 GGCTGGGGACTTTGACCTT 59.539 57.895 0.00 0.00 0.00 3.50
934 950 2.539081 GGGCTGGGGACTTTGACCT 61.539 63.158 0.00 0.00 0.00 3.85
935 951 2.035783 GGGCTGGGGACTTTGACC 59.964 66.667 0.00 0.00 0.00 4.02
936 952 2.035783 GGGGCTGGGGACTTTGAC 59.964 66.667 0.00 0.00 0.00 3.18
937 953 3.264845 GGGGGCTGGGGACTTTGA 61.265 66.667 0.00 0.00 0.00 2.69
957 973 1.623163 TATATGCGATCACCCCGTCA 58.377 50.000 0.00 0.00 0.00 4.35
964 980 6.986231 TGGATGGATGTTATATATGCGATCAC 59.014 38.462 0.00 0.00 0.00 3.06
965 981 7.123355 TGGATGGATGTTATATATGCGATCA 57.877 36.000 0.00 0.00 0.00 2.92
978 994 3.099141 GGACATGGTTTGGATGGATGTT 58.901 45.455 0.00 0.00 0.00 2.71
986 1002 0.251297 CAGCCTGGACATGGTTTGGA 60.251 55.000 0.00 0.00 0.00 3.53
1222 1373 0.524862 TCACCTTCTTCGTCGCTACC 59.475 55.000 0.00 0.00 0.00 3.18
1224 1375 0.167470 CGTCACCTTCTTCGTCGCTA 59.833 55.000 0.00 0.00 0.00 4.26
1227 1378 2.087009 GCCGTCACCTTCTTCGTCG 61.087 63.158 0.00 0.00 0.00 5.12
1229 1380 0.179067 TTTGCCGTCACCTTCTTCGT 60.179 50.000 0.00 0.00 0.00 3.85
1231 1382 0.875059 CCTTTGCCGTCACCTTCTTC 59.125 55.000 0.00 0.00 0.00 2.87
1232 1383 1.172812 GCCTTTGCCGTCACCTTCTT 61.173 55.000 0.00 0.00 0.00 2.52
1234 1385 2.954611 GCCTTTGCCGTCACCTTC 59.045 61.111 0.00 0.00 0.00 3.46
1235 1386 2.978010 CGCCTTTGCCGTCACCTT 60.978 61.111 0.00 0.00 0.00 3.50
1264 1427 2.434359 CCCACCTTCTTCGTCGCC 60.434 66.667 0.00 0.00 0.00 5.54
1299 1462 4.918201 CCATCTTCTCGCGCCCCC 62.918 72.222 0.00 0.00 0.00 5.40
1301 1464 4.838152 TGCCATCTTCTCGCGCCC 62.838 66.667 0.00 0.00 0.00 6.13
1329 1495 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
1354 1520 3.649277 CTCCTTCTCCACCGCCACG 62.649 68.421 0.00 0.00 0.00 4.94
1516 1682 2.348998 CAGACCTCGGCAAAGGCT 59.651 61.111 3.62 0.28 40.34 4.58
1547 1713 4.779733 TGGAGACTCCGAGGGGCC 62.780 72.222 16.81 0.00 40.17 5.80
1548 1714 3.151022 CTGGAGACTCCGAGGGGC 61.151 72.222 16.81 0.00 40.17 5.80
1549 1715 3.151022 GCTGGAGACTCCGAGGGG 61.151 72.222 16.81 5.61 40.17 4.79
1550 1716 3.522731 CGCTGGAGACTCCGAGGG 61.523 72.222 16.81 17.17 40.17 4.30
1590 1756 2.028045 GTCACTCATCACGCGTGTATTG 59.972 50.000 35.74 28.73 31.98 1.90
1591 1757 2.094700 AGTCACTCATCACGCGTGTATT 60.095 45.455 35.74 20.45 31.98 1.89
1592 1758 1.472878 AGTCACTCATCACGCGTGTAT 59.527 47.619 35.74 24.66 31.98 2.29
1593 1759 0.879090 AGTCACTCATCACGCGTGTA 59.121 50.000 35.74 23.61 31.98 2.90
1612 1785 3.726595 CTTGCCGGGCCGACGAATA 62.727 63.158 30.79 0.00 35.47 1.75
1658 1843 2.612972 GGATCTTGAGACCGCACAGAAA 60.613 50.000 0.00 0.00 0.00 2.52
1666 1851 0.460987 GTGCCAGGATCTTGAGACCG 60.461 60.000 6.37 0.00 0.00 4.79
1690 1883 1.339610 GCAGGTTTATGTGCACACCAA 59.660 47.619 24.37 16.44 39.62 3.67
1697 1890 1.664151 GGTAGTCGCAGGTTTATGTGC 59.336 52.381 0.00 0.00 36.27 4.57
1720 1913 3.926527 AGCACACACATTATACGACACTG 59.073 43.478 0.00 0.00 0.00 3.66
1817 2057 3.190079 CACAGCACTGCTAATCGTACAT 58.810 45.455 2.39 0.00 36.40 2.29
1818 2058 2.029380 ACACAGCACTGCTAATCGTACA 60.029 45.455 2.39 0.00 36.40 2.90
1821 2061 2.169832 AACACAGCACTGCTAATCGT 57.830 45.000 2.39 0.00 36.40 3.73
1862 2107 4.884164 GGCTCATTACATTAGAAAGTGCCT 59.116 41.667 0.00 0.00 33.45 4.75
1874 2119 2.988010 TGAAGAGCGGCTCATTACAT 57.012 45.000 29.88 7.06 32.06 2.29
1878 2123 1.340405 ACCAATGAAGAGCGGCTCATT 60.340 47.619 29.88 20.38 33.62 2.57
1879 2124 0.254178 ACCAATGAAGAGCGGCTCAT 59.746 50.000 29.88 20.06 32.06 2.90
1880 2125 0.674581 CACCAATGAAGAGCGGCTCA 60.675 55.000 29.88 12.59 32.06 4.26
1881 2126 1.372087 CCACCAATGAAGAGCGGCTC 61.372 60.000 22.13 22.13 0.00 4.70
1889 2158 3.960571 AGAGTGAATCCCACCAATGAAG 58.039 45.455 0.00 0.00 46.87 3.02
1896 2165 9.660180 GATATATAGAAAAGAGTGAATCCCACC 57.340 37.037 0.00 0.00 46.87 4.61
1918 2187 4.624364 CGATGAGACGGAGGGAGTAGATAT 60.624 50.000 0.00 0.00 0.00 1.63
1921 2190 1.202663 CGATGAGACGGAGGGAGTAGA 60.203 57.143 0.00 0.00 0.00 2.59
1922 2191 1.231221 CGATGAGACGGAGGGAGTAG 58.769 60.000 0.00 0.00 0.00 2.57
1923 2192 0.818445 GCGATGAGACGGAGGGAGTA 60.818 60.000 0.00 0.00 0.00 2.59
1924 2193 2.122167 GCGATGAGACGGAGGGAGT 61.122 63.158 0.00 0.00 0.00 3.85
1925 2194 2.725008 GCGATGAGACGGAGGGAG 59.275 66.667 0.00 0.00 0.00 4.30
1929 2198 1.256376 CATTTTCGCGATGAGACGGAG 59.744 52.381 10.88 0.00 0.00 4.63
1934 2203 3.459232 AGATCCATTTTCGCGATGAGA 57.541 42.857 10.88 5.77 0.00 3.27
1938 2211 5.063204 TCCATTTAGATCCATTTTCGCGAT 58.937 37.500 10.88 0.00 0.00 4.58
1943 2216 8.072567 CGAAGACATCCATTTAGATCCATTTTC 58.927 37.037 0.00 0.00 0.00 2.29
1944 2217 7.775093 TCGAAGACATCCATTTAGATCCATTTT 59.225 33.333 0.00 0.00 0.00 1.82
1947 2220 6.425210 TCGAAGACATCCATTTAGATCCAT 57.575 37.500 0.00 0.00 0.00 3.41
1950 2223 7.778470 AGTTTCGAAGACATCCATTTAGATC 57.222 36.000 0.00 0.00 34.32 2.75
1957 2230 8.665685 GTGTATTTTAGTTTCGAAGACATCCAT 58.334 33.333 0.00 0.00 34.32 3.41
1983 2256 7.545965 ACAAGACAACCGATCAAAATAGTCTAG 59.454 37.037 0.00 0.00 34.32 2.43
1988 2309 7.647715 ACAAAACAAGACAACCGATCAAAATAG 59.352 33.333 0.00 0.00 0.00 1.73
1996 2317 8.710835 AATAAAAACAAAACAAGACAACCGAT 57.289 26.923 0.00 0.00 0.00 4.18
2024 2345 5.416013 GCTAAAACTTAAGCTGACCCAGATT 59.584 40.000 1.29 2.97 42.83 2.40
2033 2354 7.698836 AACACAATTGCTAAAACTTAAGCTG 57.301 32.000 5.05 0.00 39.53 4.24
2034 2355 9.410556 CATAACACAATTGCTAAAACTTAAGCT 57.589 29.630 5.05 0.00 39.53 3.74
2062 2383 9.496873 AGCACACTATACAAACAATAAACACTA 57.503 29.630 0.00 0.00 0.00 2.74
2064 2385 9.755064 CTAGCACACTATACAAACAATAAACAC 57.245 33.333 0.00 0.00 0.00 3.32
2091 2412 2.536997 ATACCGTCCCCAACAGCAGC 62.537 60.000 0.00 0.00 0.00 5.25
2101 2422 3.522553 CTCTCAGAACAAATACCGTCCC 58.477 50.000 0.00 0.00 0.00 4.46
2102 2423 3.194968 TCCTCTCAGAACAAATACCGTCC 59.805 47.826 0.00 0.00 0.00 4.79
2106 2427 5.186021 TCACTCTCCTCTCAGAACAAATACC 59.814 44.000 0.00 0.00 0.00 2.73
2184 2505 1.812571 GGGCTCACACAACTACATTGG 59.187 52.381 0.00 0.00 43.20 3.16
2186 2507 1.271926 GGGGGCTCACACAACTACATT 60.272 52.381 0.00 0.00 0.00 2.71
2206 2527 1.268640 GCGCGGAGTAGGAGTTCTTAG 60.269 57.143 8.83 0.00 0.00 2.18
2212 2533 1.248785 TTTCAGCGCGGAGTAGGAGT 61.249 55.000 10.78 0.00 0.00 3.85
2216 2537 0.460284 ATGGTTTCAGCGCGGAGTAG 60.460 55.000 10.78 0.00 0.00 2.57
2223 2544 1.632422 CAATTCCATGGTTTCAGCGC 58.368 50.000 12.58 0.00 0.00 5.92
2250 2571 5.845391 TTTCTTTTCAACATTCGGAACCT 57.155 34.783 0.00 0.00 0.00 3.50
2252 2573 7.274686 TGAAGTTTTCTTTTCAACATTCGGAAC 59.725 33.333 0.00 0.00 40.61 3.62
2256 2577 7.484641 TGAGTGAAGTTTTCTTTTCAACATTCG 59.515 33.333 0.00 0.00 40.61 3.34
2257 2578 8.587111 GTGAGTGAAGTTTTCTTTTCAACATTC 58.413 33.333 0.00 0.00 40.61 2.67
2259 2580 6.747280 CGTGAGTGAAGTTTTCTTTTCAACAT 59.253 34.615 0.00 0.00 40.61 2.71
2261 2582 6.084277 ACGTGAGTGAAGTTTTCTTTTCAAC 58.916 36.000 0.00 0.00 46.97 3.18
2262 2583 6.249035 ACGTGAGTGAAGTTTTCTTTTCAA 57.751 33.333 0.00 0.00 46.97 2.69
2263 2584 5.873179 ACGTGAGTGAAGTTTTCTTTTCA 57.127 34.783 0.00 0.00 46.97 2.69
2304 2627 9.971922 AATAAAAATTCCATCGATTCATCCTTC 57.028 29.630 0.00 0.00 0.00 3.46
2334 2665 9.020731 AGAGTATCCCGTTGTTTTAATTCAAAT 57.979 29.630 0.00 0.00 33.66 2.32
2337 2668 7.391620 AGAGAGTATCCCGTTGTTTTAATTCA 58.608 34.615 0.00 0.00 33.66 2.57
2354 2685 6.461788 GCGGAGTAAGAAAATGGAGAGAGTAT 60.462 42.308 0.00 0.00 0.00 2.12
2543 2874 6.206634 TCGAGCTTCATAAAGTTTCACCAAAT 59.793 34.615 0.00 0.00 34.79 2.32
2550 2881 6.812160 TCCTAAGTCGAGCTTCATAAAGTTTC 59.188 38.462 0.00 0.00 38.57 2.78
2658 2989 0.805614 TTGAAACCCACGTGTGTGTG 59.194 50.000 15.65 0.00 44.92 3.82
2659 2990 1.200484 GTTTGAAACCCACGTGTGTGT 59.800 47.619 15.65 3.64 44.92 3.72
2820 3152 2.559668 ACCCAATTTCATGTGTGAGCAG 59.440 45.455 0.00 0.00 35.39 4.24
2846 3178 9.669353 CGTTATATAGCAGCAATCAAGAAATTT 57.331 29.630 0.00 0.00 0.00 1.82
2847 3179 7.805071 GCGTTATATAGCAGCAATCAAGAAATT 59.195 33.333 0.00 0.00 0.00 1.82
2848 3180 7.173907 AGCGTTATATAGCAGCAATCAAGAAAT 59.826 33.333 12.91 0.00 35.48 2.17
2871 3203 0.034767 ATGGGATGGCCATATGAGCG 60.035 55.000 20.84 0.00 35.15 5.03
2906 3239 1.748500 GAGAAGGGAGCCAAGCTGC 60.749 63.158 0.00 0.00 46.16 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.