Multiple sequence alignment - TraesCS1B01G413400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G413400 chr1B 100.000 3140 0 0 1 3140 638822943 638819804 0.000000e+00 5799
1 TraesCS1B01G413400 chr1B 87.907 1290 113 21 1050 2316 638783788 638782519 0.000000e+00 1478
2 TraesCS1B01G413400 chr1B 86.038 1411 157 24 947 2335 638881980 638883372 0.000000e+00 1478
3 TraesCS1B01G413400 chr1D 95.481 1881 61 7 651 2510 463326810 463324933 0.000000e+00 2981
4 TraesCS1B01G413400 chr1D 88.727 1304 119 13 1052 2337 463283140 463281847 0.000000e+00 1568
5 TraesCS1B01G413400 chr1D 87.381 1260 130 16 947 2194 463341297 463342539 0.000000e+00 1419
6 TraesCS1B01G413400 chr1D 87.424 660 41 19 2512 3134 478814815 478814161 0.000000e+00 721
7 TraesCS1B01G413400 chr1D 84.321 574 33 21 116 647 463327729 463327171 2.790000e-140 508
8 TraesCS1B01G413400 chr1A 94.838 1879 65 9 651 2510 555523513 555521648 0.000000e+00 2904
9 TraesCS1B01G413400 chr1A 87.853 1309 130 14 1050 2340 555484999 555483702 0.000000e+00 1509
10 TraesCS1B01G413400 chr1A 86.935 1240 133 17 947 2174 555533442 555534664 0.000000e+00 1365
11 TraesCS1B01G413400 chr1A 82.986 576 35 17 116 647 555524447 555523891 2.210000e-126 462
12 TraesCS1B01G413400 chr2B 89.440 625 46 10 2509 3131 635751369 635751975 0.000000e+00 771
13 TraesCS1B01G413400 chr2B 87.730 652 54 9 2508 3137 19145331 19144684 0.000000e+00 737
14 TraesCS1B01G413400 chr3D 88.421 665 37 13 2507 3134 345757190 345757851 0.000000e+00 765
15 TraesCS1B01G413400 chr3D 78.323 978 178 23 1053 2012 371870640 371869679 4.480000e-168 601
16 TraesCS1B01G413400 chr5B 89.120 625 48 13 2512 3134 572383357 572382751 0.000000e+00 760
17 TraesCS1B01G413400 chr7D 88.235 663 37 13 2512 3137 621221520 621220862 0.000000e+00 754
18 TraesCS1B01G413400 chr7D 88.336 643 45 10 2518 3131 578839534 578840175 0.000000e+00 745
19 TraesCS1B01G413400 chr7D 87.764 662 38 19 2510 3134 134721604 134722259 0.000000e+00 734
20 TraesCS1B01G413400 chr7D 87.240 674 42 17 2503 3134 181642224 181642895 0.000000e+00 728
21 TraesCS1B01G413400 chr5A 87.768 654 51 11 2512 3140 407772404 407773053 0.000000e+00 737
22 TraesCS1B01G413400 chr3B 87.786 655 44 15 2513 3134 80094113 80093462 0.000000e+00 734
23 TraesCS1B01G413400 chr7A 87.368 665 49 14 2507 3137 127659874 127659211 0.000000e+00 730
24 TraesCS1B01G413400 chr3A 87.730 652 45 16 2512 3131 696045233 696045881 0.000000e+00 728
25 TraesCS1B01G413400 chr3A 88.263 426 34 7 2512 2923 634712540 634712963 2.180000e-136 496
26 TraesCS1B01G413400 chr3A 86.335 483 31 8 2682 3131 628702808 628703288 7.820000e-136 494
27 TraesCS1B01G413400 chr4D 87.576 660 39 15 2518 3137 419423522 419422866 0.000000e+00 725


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G413400 chr1B 638819804 638822943 3139 True 5799.0 5799 100.000 1 3140 1 chr1B.!!$R2 3139
1 TraesCS1B01G413400 chr1B 638782519 638783788 1269 True 1478.0 1478 87.907 1050 2316 1 chr1B.!!$R1 1266
2 TraesCS1B01G413400 chr1B 638881980 638883372 1392 False 1478.0 1478 86.038 947 2335 1 chr1B.!!$F1 1388
3 TraesCS1B01G413400 chr1D 463324933 463327729 2796 True 1744.5 2981 89.901 116 2510 2 chr1D.!!$R3 2394
4 TraesCS1B01G413400 chr1D 463281847 463283140 1293 True 1568.0 1568 88.727 1052 2337 1 chr1D.!!$R1 1285
5 TraesCS1B01G413400 chr1D 463341297 463342539 1242 False 1419.0 1419 87.381 947 2194 1 chr1D.!!$F1 1247
6 TraesCS1B01G413400 chr1D 478814161 478814815 654 True 721.0 721 87.424 2512 3134 1 chr1D.!!$R2 622
7 TraesCS1B01G413400 chr1A 555521648 555524447 2799 True 1683.0 2904 88.912 116 2510 2 chr1A.!!$R2 2394
8 TraesCS1B01G413400 chr1A 555483702 555484999 1297 True 1509.0 1509 87.853 1050 2340 1 chr1A.!!$R1 1290
9 TraesCS1B01G413400 chr1A 555533442 555534664 1222 False 1365.0 1365 86.935 947 2174 1 chr1A.!!$F1 1227
10 TraesCS1B01G413400 chr2B 635751369 635751975 606 False 771.0 771 89.440 2509 3131 1 chr2B.!!$F1 622
11 TraesCS1B01G413400 chr2B 19144684 19145331 647 True 737.0 737 87.730 2508 3137 1 chr2B.!!$R1 629
12 TraesCS1B01G413400 chr3D 345757190 345757851 661 False 765.0 765 88.421 2507 3134 1 chr3D.!!$F1 627
13 TraesCS1B01G413400 chr3D 371869679 371870640 961 True 601.0 601 78.323 1053 2012 1 chr3D.!!$R1 959
14 TraesCS1B01G413400 chr5B 572382751 572383357 606 True 760.0 760 89.120 2512 3134 1 chr5B.!!$R1 622
15 TraesCS1B01G413400 chr7D 621220862 621221520 658 True 754.0 754 88.235 2512 3137 1 chr7D.!!$R1 625
16 TraesCS1B01G413400 chr7D 578839534 578840175 641 False 745.0 745 88.336 2518 3131 1 chr7D.!!$F3 613
17 TraesCS1B01G413400 chr7D 134721604 134722259 655 False 734.0 734 87.764 2510 3134 1 chr7D.!!$F1 624
18 TraesCS1B01G413400 chr7D 181642224 181642895 671 False 728.0 728 87.240 2503 3134 1 chr7D.!!$F2 631
19 TraesCS1B01G413400 chr5A 407772404 407773053 649 False 737.0 737 87.768 2512 3140 1 chr5A.!!$F1 628
20 TraesCS1B01G413400 chr3B 80093462 80094113 651 True 734.0 734 87.786 2513 3134 1 chr3B.!!$R1 621
21 TraesCS1B01G413400 chr7A 127659211 127659874 663 True 730.0 730 87.368 2507 3137 1 chr7A.!!$R1 630
22 TraesCS1B01G413400 chr3A 696045233 696045881 648 False 728.0 728 87.730 2512 3131 1 chr3A.!!$F3 619
23 TraesCS1B01G413400 chr4D 419422866 419423522 656 True 725.0 725 87.576 2518 3137 1 chr4D.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 260 0.183731 CCTTGATTCCAGTAGCCCCC 59.816 60.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2613 2.050077 GGCACTGCCTCGTTTTGC 60.05 61.111 13.28 0.0 46.69 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.947910 AGCAGGATCAAACAAATGTGG 57.052 42.857 0.00 0.00 0.00 4.17
21 22 3.233507 AGCAGGATCAAACAAATGTGGT 58.766 40.909 0.00 0.00 0.00 4.16
22 23 4.406456 AGCAGGATCAAACAAATGTGGTA 58.594 39.130 0.00 0.00 0.00 3.25
23 24 4.832266 AGCAGGATCAAACAAATGTGGTAA 59.168 37.500 0.00 0.00 0.00 2.85
24 25 5.047802 AGCAGGATCAAACAAATGTGGTAAG 60.048 40.000 0.00 0.00 0.00 2.34
25 26 5.278957 GCAGGATCAAACAAATGTGGTAAGT 60.279 40.000 0.00 0.00 0.00 2.24
26 27 6.151691 CAGGATCAAACAAATGTGGTAAGTG 58.848 40.000 0.00 0.00 0.00 3.16
27 28 5.833131 AGGATCAAACAAATGTGGTAAGTGT 59.167 36.000 0.00 0.00 0.00 3.55
28 29 6.323739 AGGATCAAACAAATGTGGTAAGTGTT 59.676 34.615 0.00 0.00 33.97 3.32
29 30 7.504238 AGGATCAAACAAATGTGGTAAGTGTTA 59.496 33.333 0.00 0.00 32.32 2.41
30 31 8.138712 GGATCAAACAAATGTGGTAAGTGTTAA 58.861 33.333 0.00 0.00 32.32 2.01
31 32 9.691362 GATCAAACAAATGTGGTAAGTGTTAAT 57.309 29.630 0.00 0.00 32.32 1.40
32 33 9.691362 ATCAAACAAATGTGGTAAGTGTTAATC 57.309 29.630 0.00 0.00 32.32 1.75
33 34 8.687242 TCAAACAAATGTGGTAAGTGTTAATCA 58.313 29.630 0.00 0.00 32.32 2.57
34 35 8.967218 CAAACAAATGTGGTAAGTGTTAATCAG 58.033 33.333 0.00 0.00 32.32 2.90
35 36 6.677913 ACAAATGTGGTAAGTGTTAATCAGC 58.322 36.000 0.00 0.00 0.00 4.26
36 37 6.264292 ACAAATGTGGTAAGTGTTAATCAGCA 59.736 34.615 0.00 0.00 0.00 4.41
37 38 5.880054 ATGTGGTAAGTGTTAATCAGCAC 57.120 39.130 0.00 0.00 37.94 4.40
38 39 4.968259 TGTGGTAAGTGTTAATCAGCACT 58.032 39.130 0.00 0.00 46.93 4.40
39 40 4.754618 TGTGGTAAGTGTTAATCAGCACTG 59.245 41.667 0.00 0.00 44.52 3.66
40 41 3.751175 TGGTAAGTGTTAATCAGCACTGC 59.249 43.478 0.00 0.00 44.52 4.40
41 42 3.127030 GGTAAGTGTTAATCAGCACTGCC 59.873 47.826 0.00 0.00 44.52 4.85
42 43 1.442769 AGTGTTAATCAGCACTGCCG 58.557 50.000 0.00 0.00 43.73 5.69
43 44 1.001974 AGTGTTAATCAGCACTGCCGA 59.998 47.619 0.00 0.00 43.73 5.54
44 45 2.009774 GTGTTAATCAGCACTGCCGAT 58.990 47.619 0.00 0.00 33.43 4.18
45 46 2.030946 GTGTTAATCAGCACTGCCGATC 59.969 50.000 0.08 0.00 33.43 3.69
46 47 2.093500 TGTTAATCAGCACTGCCGATCT 60.093 45.455 0.08 0.00 0.00 2.75
47 48 2.229675 TAATCAGCACTGCCGATCTG 57.770 50.000 0.08 0.00 0.00 2.90
48 49 0.538584 AATCAGCACTGCCGATCTGA 59.461 50.000 0.08 0.00 39.54 3.27
49 50 0.757512 ATCAGCACTGCCGATCTGAT 59.242 50.000 0.00 9.61 40.36 2.90
50 51 0.538584 TCAGCACTGCCGATCTGATT 59.461 50.000 0.00 0.00 31.35 2.57
51 52 1.065926 TCAGCACTGCCGATCTGATTT 60.066 47.619 0.00 0.00 31.35 2.17
52 53 1.741706 CAGCACTGCCGATCTGATTTT 59.258 47.619 0.00 0.00 0.00 1.82
53 54 2.938451 CAGCACTGCCGATCTGATTTTA 59.062 45.455 0.00 0.00 0.00 1.52
54 55 3.374988 CAGCACTGCCGATCTGATTTTAA 59.625 43.478 0.00 0.00 0.00 1.52
55 56 4.036027 CAGCACTGCCGATCTGATTTTAAT 59.964 41.667 0.00 0.00 0.00 1.40
56 57 4.641989 AGCACTGCCGATCTGATTTTAATT 59.358 37.500 0.00 0.00 0.00 1.40
57 58 5.126061 AGCACTGCCGATCTGATTTTAATTT 59.874 36.000 0.00 0.00 0.00 1.82
58 59 5.807011 GCACTGCCGATCTGATTTTAATTTT 59.193 36.000 0.00 0.00 0.00 1.82
59 60 6.237648 GCACTGCCGATCTGATTTTAATTTTG 60.238 38.462 0.00 0.00 0.00 2.44
60 61 5.807011 ACTGCCGATCTGATTTTAATTTTGC 59.193 36.000 0.00 0.00 0.00 3.68
61 62 5.718146 TGCCGATCTGATTTTAATTTTGCA 58.282 33.333 0.00 0.00 0.00 4.08
62 63 5.576384 TGCCGATCTGATTTTAATTTTGCAC 59.424 36.000 0.00 0.00 0.00 4.57
63 64 5.005682 GCCGATCTGATTTTAATTTTGCACC 59.994 40.000 0.00 0.00 0.00 5.01
64 65 6.098679 CCGATCTGATTTTAATTTTGCACCA 58.901 36.000 0.00 0.00 0.00 4.17
65 66 6.589523 CCGATCTGATTTTAATTTTGCACCAA 59.410 34.615 0.00 0.00 0.00 3.67
66 67 7.411804 CCGATCTGATTTTAATTTTGCACCAAC 60.412 37.037 0.00 0.00 0.00 3.77
67 68 7.329226 CGATCTGATTTTAATTTTGCACCAACT 59.671 33.333 0.00 0.00 0.00 3.16
68 69 7.712264 TCTGATTTTAATTTTGCACCAACTG 57.288 32.000 0.00 0.00 0.00 3.16
69 70 7.495901 TCTGATTTTAATTTTGCACCAACTGA 58.504 30.769 0.00 0.00 0.00 3.41
70 71 8.149647 TCTGATTTTAATTTTGCACCAACTGAT 58.850 29.630 0.00 0.00 0.00 2.90
71 72 8.085720 TGATTTTAATTTTGCACCAACTGATG 57.914 30.769 0.00 0.00 0.00 3.07
72 73 5.921004 TTTAATTTTGCACCAACTGATGC 57.079 34.783 0.00 0.00 42.40 3.91
73 74 3.756933 AATTTTGCACCAACTGATGCT 57.243 38.095 0.00 0.00 42.55 3.79
74 75 2.798976 TTTTGCACCAACTGATGCTC 57.201 45.000 0.00 0.00 42.55 4.26
75 76 0.961019 TTTGCACCAACTGATGCTCC 59.039 50.000 0.00 0.00 42.55 4.70
76 77 1.236616 TTGCACCAACTGATGCTCCG 61.237 55.000 0.00 0.00 42.55 4.63
77 78 1.672356 GCACCAACTGATGCTCCGT 60.672 57.895 0.00 0.00 38.84 4.69
78 79 1.237285 GCACCAACTGATGCTCCGTT 61.237 55.000 0.00 0.00 38.84 4.44
79 80 1.238439 CACCAACTGATGCTCCGTTT 58.762 50.000 0.00 0.00 0.00 3.60
80 81 1.608590 CACCAACTGATGCTCCGTTTT 59.391 47.619 0.00 0.00 0.00 2.43
81 82 1.880027 ACCAACTGATGCTCCGTTTTC 59.120 47.619 0.00 0.00 0.00 2.29
82 83 1.879380 CCAACTGATGCTCCGTTTTCA 59.121 47.619 0.00 0.00 0.00 2.69
83 84 2.095567 CCAACTGATGCTCCGTTTTCAG 60.096 50.000 0.00 0.00 41.06 3.02
84 85 2.550830 ACTGATGCTCCGTTTTCAGT 57.449 45.000 0.00 0.00 42.91 3.41
85 86 2.417719 ACTGATGCTCCGTTTTCAGTC 58.582 47.619 0.00 0.00 44.00 3.51
86 87 2.037772 ACTGATGCTCCGTTTTCAGTCT 59.962 45.455 0.00 0.00 44.00 3.24
87 88 3.070018 CTGATGCTCCGTTTTCAGTCTT 58.930 45.455 0.00 0.00 32.73 3.01
88 89 3.476552 TGATGCTCCGTTTTCAGTCTTT 58.523 40.909 0.00 0.00 0.00 2.52
89 90 3.250762 TGATGCTCCGTTTTCAGTCTTTG 59.749 43.478 0.00 0.00 0.00 2.77
90 91 1.946768 TGCTCCGTTTTCAGTCTTTGG 59.053 47.619 0.00 0.00 0.00 3.28
91 92 2.218603 GCTCCGTTTTCAGTCTTTGGA 58.781 47.619 0.00 0.00 0.00 3.53
92 93 2.616842 GCTCCGTTTTCAGTCTTTGGAA 59.383 45.455 0.00 0.00 0.00 3.53
93 94 3.304057 GCTCCGTTTTCAGTCTTTGGAAG 60.304 47.826 0.00 0.00 0.00 3.46
94 95 2.616842 TCCGTTTTCAGTCTTTGGAAGC 59.383 45.455 0.00 0.00 0.00 3.86
95 96 2.618709 CCGTTTTCAGTCTTTGGAAGCT 59.381 45.455 0.00 0.00 0.00 3.74
96 97 3.548818 CCGTTTTCAGTCTTTGGAAGCTG 60.549 47.826 0.00 6.06 35.42 4.24
97 98 3.065371 CGTTTTCAGTCTTTGGAAGCTGT 59.935 43.478 0.00 0.00 35.53 4.40
98 99 4.354587 GTTTTCAGTCTTTGGAAGCTGTG 58.645 43.478 0.00 0.00 35.53 3.66
99 100 2.260844 TCAGTCTTTGGAAGCTGTGG 57.739 50.000 0.00 0.00 35.53 4.17
100 101 0.595095 CAGTCTTTGGAAGCTGTGGC 59.405 55.000 0.00 0.00 39.06 5.01
101 102 0.886490 AGTCTTTGGAAGCTGTGGCG 60.886 55.000 0.00 0.00 44.37 5.69
102 103 1.148273 TCTTTGGAAGCTGTGGCGT 59.852 52.632 0.00 0.00 44.37 5.68
103 104 0.394938 TCTTTGGAAGCTGTGGCGTA 59.605 50.000 0.00 0.00 44.37 4.42
104 105 1.003118 TCTTTGGAAGCTGTGGCGTAT 59.997 47.619 0.00 0.00 44.37 3.06
105 106 1.812571 CTTTGGAAGCTGTGGCGTATT 59.187 47.619 0.00 0.00 44.37 1.89
106 107 1.448985 TTGGAAGCTGTGGCGTATTC 58.551 50.000 0.00 0.00 44.37 1.75
107 108 0.392461 TGGAAGCTGTGGCGTATTCC 60.392 55.000 0.00 0.00 44.37 3.01
108 109 1.095807 GGAAGCTGTGGCGTATTCCC 61.096 60.000 0.00 0.00 44.37 3.97
109 110 1.077716 AAGCTGTGGCGTATTCCCC 60.078 57.895 0.00 0.00 44.37 4.81
110 111 1.562672 AAGCTGTGGCGTATTCCCCT 61.563 55.000 0.00 0.00 44.37 4.79
111 112 1.077716 GCTGTGGCGTATTCCCCTT 60.078 57.895 0.00 0.00 0.00 3.95
112 113 1.376609 GCTGTGGCGTATTCCCCTTG 61.377 60.000 0.00 0.00 0.00 3.61
113 114 1.376609 CTGTGGCGTATTCCCCTTGC 61.377 60.000 0.00 0.00 0.00 4.01
114 115 2.124901 TGGCGTATTCCCCTTGCG 60.125 61.111 0.00 0.00 0.00 4.85
144 148 3.070018 CGTGCACTTCTTCTTCATCCTT 58.930 45.455 16.19 0.00 0.00 3.36
164 168 4.741676 CCTTCAGTTTGCAAATCTGTGTTC 59.258 41.667 26.54 11.13 42.71 3.18
174 178 4.441087 GCAAATCTGTGTTCGTTTCCTTTC 59.559 41.667 0.00 0.00 0.00 2.62
225 232 7.649306 AGACAACTGTTAAGAACATGAAAATGC 59.351 33.333 0.00 0.00 41.26 3.56
227 234 7.649306 ACAACTGTTAAGAACATGAAAATGCTC 59.351 33.333 0.00 0.00 41.26 4.26
249 260 0.183731 CCTTGATTCCAGTAGCCCCC 59.816 60.000 0.00 0.00 0.00 5.40
275 293 3.255888 CCTTTAGGTTTCTTGCCACTTCC 59.744 47.826 0.00 0.00 0.00 3.46
302 329 5.860182 CACACAAGCATAGTTCCAAATCAAG 59.140 40.000 0.00 0.00 0.00 3.02
378 410 3.260632 AGCACGTGACATATATATGGCCA 59.739 43.478 23.16 8.56 41.08 5.36
379 411 4.080919 AGCACGTGACATATATATGGCCAT 60.081 41.667 24.45 24.45 41.08 4.40
380 412 5.128663 AGCACGTGACATATATATGGCCATA 59.871 40.000 27.36 27.36 41.08 2.74
381 413 5.991606 GCACGTGACATATATATGGCCATAT 59.008 40.000 34.76 34.76 41.08 1.78
435 477 8.621286 TCTTTAGTTGAACACTTCATTTCCTTC 58.379 33.333 0.00 0.00 39.84 3.46
436 478 5.774498 AGTTGAACACTTCATTTCCTTCC 57.226 39.130 0.00 0.00 39.84 3.46
437 479 4.584743 AGTTGAACACTTCATTTCCTTCCC 59.415 41.667 0.00 0.00 39.84 3.97
438 480 4.453480 TGAACACTTCATTTCCTTCCCT 57.547 40.909 0.00 0.00 34.08 4.20
439 481 4.803452 TGAACACTTCATTTCCTTCCCTT 58.197 39.130 0.00 0.00 34.08 3.95
440 482 5.208121 TGAACACTTCATTTCCTTCCCTTT 58.792 37.500 0.00 0.00 34.08 3.11
441 483 5.301805 TGAACACTTCATTTCCTTCCCTTTC 59.698 40.000 0.00 0.00 34.08 2.62
442 484 4.152647 ACACTTCATTTCCTTCCCTTTCC 58.847 43.478 0.00 0.00 0.00 3.13
443 485 4.151883 CACTTCATTTCCTTCCCTTTCCA 58.848 43.478 0.00 0.00 0.00 3.53
444 486 4.774200 CACTTCATTTCCTTCCCTTTCCAT 59.226 41.667 0.00 0.00 0.00 3.41
478 526 5.125100 CACTTTTGTGTGCCAAGATACAT 57.875 39.130 0.00 0.00 44.94 2.29
495 543 1.930503 ACATACACACACACACACACG 59.069 47.619 0.00 0.00 0.00 4.49
496 544 2.197577 CATACACACACACACACACGA 58.802 47.619 0.00 0.00 0.00 4.35
505 561 1.069204 ACACACACACGAGATTGAGCT 59.931 47.619 0.00 0.00 0.00 4.09
516 572 5.801444 CACGAGATTGAGCTGAGATATGATC 59.199 44.000 0.00 0.00 0.00 2.92
549 609 9.722184 ATCAGAGTCATCATGAAATGTATTAGG 57.278 33.333 0.00 0.00 46.80 2.69
642 705 3.732048 ATTGTGAAACGGAGGGGTATT 57.268 42.857 0.00 0.00 42.39 1.89
643 706 4.847990 ATTGTGAAACGGAGGGGTATTA 57.152 40.909 0.00 0.00 42.39 0.98
644 707 4.847990 TTGTGAAACGGAGGGGTATTAT 57.152 40.909 0.00 0.00 42.39 1.28
645 708 5.954153 TTGTGAAACGGAGGGGTATTATA 57.046 39.130 0.00 0.00 42.39 0.98
649 1088 5.699458 GTGAAACGGAGGGGTATTATATGTG 59.301 44.000 0.00 0.00 0.00 3.21
705 1144 3.021269 TGCACGAATACATCCGTATCC 57.979 47.619 0.00 0.00 37.34 2.59
706 1145 2.626266 TGCACGAATACATCCGTATCCT 59.374 45.455 0.00 0.00 37.34 3.24
707 1146 3.822167 TGCACGAATACATCCGTATCCTA 59.178 43.478 0.00 0.00 37.34 2.94
742 1185 4.354725 GCATTGCCGCGTTTATTATTTC 57.645 40.909 4.92 0.00 0.00 2.17
746 1189 4.217754 TGCCGCGTTTATTATTTCCATC 57.782 40.909 4.92 0.00 0.00 3.51
755 1198 7.382218 GCGTTTATTATTTCCATCCAATCCTTG 59.618 37.037 0.00 0.00 0.00 3.61
796 1239 9.914131 AGGAAACTTTGTATTTTTCTGCTAATC 57.086 29.630 0.00 0.00 37.44 1.75
837 1280 4.272018 GCTGTGATCAAATACACTAGCTGG 59.728 45.833 0.00 0.00 37.73 4.85
840 1283 3.455910 TGATCAAATACACTAGCTGGGCT 59.544 43.478 0.85 0.00 43.41 5.19
845 1288 5.183140 TCAAATACACTAGCTGGGCTTTTTC 59.817 40.000 0.85 0.00 40.44 2.29
850 1293 1.734465 CTAGCTGGGCTTTTTCTCACG 59.266 52.381 0.00 0.00 40.44 4.35
916 1359 1.969923 CAATCTCTAGCTAGCTGGCCT 59.030 52.381 27.68 9.08 0.00 5.19
2033 2497 2.870372 CAAGAAGAAAGCCGCCGG 59.130 61.111 0.00 0.00 0.00 6.13
2140 2613 0.584876 GACCGTCCAAACCGTTTGAG 59.415 55.000 22.93 13.83 43.26 3.02
2142 2615 1.440938 CCGTCCAAACCGTTTGAGCA 61.441 55.000 22.93 5.98 43.26 4.26
2180 2657 2.288025 ACAGGGGGTACGCACGAAT 61.288 57.895 12.45 0.00 45.96 3.34
2188 2665 1.323534 GGTACGCACGAATCATGTGAC 59.676 52.381 0.00 0.00 39.73 3.67
2353 2868 0.469705 TGGATGCTTGTTTGGTGGCT 60.470 50.000 0.00 0.00 0.00 4.75
2355 2870 0.109597 GATGCTTGTTTGGTGGCTCG 60.110 55.000 0.00 0.00 0.00 5.03
2390 2907 4.000988 TCTCTTCAGGGTTATTCGCAAAC 58.999 43.478 0.00 0.00 0.00 2.93
2463 2993 6.201806 TGCCAAAAACTTGCACATTAATGTAC 59.798 34.615 20.39 15.64 39.39 2.90
2488 3018 0.770499 TCAAGGCATCAACAGGGACA 59.230 50.000 0.00 0.00 0.00 4.02
2491 3021 0.682209 AGGCATCAACAGGGACATGC 60.682 55.000 0.00 0.00 40.85 4.06
2492 3022 1.811860 GCATCAACAGGGACATGCC 59.188 57.895 0.00 0.00 36.44 4.40
2495 3025 1.747355 CATCAACAGGGACATGCCTTC 59.253 52.381 0.00 0.00 36.66 3.46
2516 3046 4.485875 TCTTGGTCAAGTACTTCAGGGTA 58.514 43.478 4.77 0.00 39.38 3.69
2523 3053 3.036075 AGTACTTCAGGGTACGTTTGC 57.964 47.619 0.00 0.00 44.59 3.68
2598 3133 9.719355 AAACTTTGGTATTCAAAACTTTGAGTT 57.281 25.926 5.64 2.18 46.68 3.01
2610 3145 7.545265 TCAAAACTTTGAGTTGTTTGGATGAAG 59.455 33.333 0.69 0.00 41.88 3.02
2729 3266 2.328099 CGTTGGCTGCTTGGTCTCC 61.328 63.158 0.00 0.00 0.00 3.71
2757 3295 1.238439 CAACTTCTGGCCATCAACGT 58.762 50.000 5.51 0.00 0.00 3.99
2782 3320 7.490725 GTCTGTGATGCATAAATCGATAGCTAT 59.509 37.037 5.76 5.76 0.00 2.97
2790 3328 4.392921 AAATCGATAGCTATCCCATCGG 57.607 45.455 24.73 11.86 41.38 4.18
2811 3371 2.504681 GGGCGTACACGTACACGG 60.505 66.667 19.02 5.20 44.95 4.94
2829 3389 2.551270 GCTGCAAACGTCGACCTG 59.449 61.111 10.58 6.29 0.00 4.00
2854 3418 2.563620 TGCATGTGTTAACTACCTCGGA 59.436 45.455 7.22 0.00 0.00 4.55
2903 3467 7.456585 ACTCTACTACAGATCCTAGCATCTAGA 59.543 40.741 0.00 0.00 31.47 2.43
2985 3566 2.867368 TGCAACAACGTAACAGTCGATT 59.133 40.909 0.00 0.00 0.00 3.34
3032 3616 0.817634 CCACTTGCCAAACACCTCGA 60.818 55.000 0.00 0.00 0.00 4.04
3035 3619 1.021202 CTTGCCAAACACCTCGACAA 58.979 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.151691 CACTTACCACATTTGTTTGATCCTG 58.848 40.000 0.00 0.00 0.00 3.86
3 4 5.833131 ACACTTACCACATTTGTTTGATCCT 59.167 36.000 0.00 0.00 0.00 3.24
5 6 9.691362 ATTAACACTTACCACATTTGTTTGATC 57.309 29.630 0.00 0.00 32.73 2.92
6 7 9.691362 GATTAACACTTACCACATTTGTTTGAT 57.309 29.630 0.00 0.00 32.73 2.57
8 9 8.864069 TGATTAACACTTACCACATTTGTTTG 57.136 30.769 0.00 0.00 32.73 2.93
11 12 6.264292 TGCTGATTAACACTTACCACATTTGT 59.736 34.615 0.00 0.00 0.00 2.83
12 13 6.582295 GTGCTGATTAACACTTACCACATTTG 59.418 38.462 0.00 0.00 33.92 2.32
13 14 6.490040 AGTGCTGATTAACACTTACCACATTT 59.510 34.615 0.00 0.00 44.59 2.32
14 15 6.003950 AGTGCTGATTAACACTTACCACATT 58.996 36.000 0.00 0.00 44.59 2.71
15 16 5.412594 CAGTGCTGATTAACACTTACCACAT 59.587 40.000 0.00 0.00 44.59 3.21
16 17 4.754618 CAGTGCTGATTAACACTTACCACA 59.245 41.667 0.00 0.00 44.59 4.17
17 18 4.378459 GCAGTGCTGATTAACACTTACCAC 60.378 45.833 8.18 0.00 44.59 4.16
18 19 3.751175 GCAGTGCTGATTAACACTTACCA 59.249 43.478 8.18 0.00 44.59 3.25
19 20 3.127030 GGCAGTGCTGATTAACACTTACC 59.873 47.826 16.11 0.00 44.59 2.85
20 21 3.181520 CGGCAGTGCTGATTAACACTTAC 60.182 47.826 19.71 0.00 44.59 2.34
21 22 3.000041 CGGCAGTGCTGATTAACACTTA 59.000 45.455 19.71 0.00 44.59 2.24
22 23 1.806542 CGGCAGTGCTGATTAACACTT 59.193 47.619 19.71 0.00 44.59 3.16
24 25 1.438651 TCGGCAGTGCTGATTAACAC 58.561 50.000 22.89 0.00 39.19 3.32
25 26 3.925453 TCGGCAGTGCTGATTAACA 57.075 47.368 22.89 0.00 39.19 2.41
32 33 1.376543 AAATCAGATCGGCAGTGCTG 58.623 50.000 18.36 18.36 36.06 4.41
33 34 2.119801 AAAATCAGATCGGCAGTGCT 57.880 45.000 16.11 0.00 0.00 4.40
34 35 4.558538 ATTAAAATCAGATCGGCAGTGC 57.441 40.909 6.55 6.55 0.00 4.40
35 36 6.237648 GCAAAATTAAAATCAGATCGGCAGTG 60.238 38.462 0.00 0.00 0.00 3.66
36 37 5.807011 GCAAAATTAAAATCAGATCGGCAGT 59.193 36.000 0.00 0.00 0.00 4.40
37 38 5.806502 TGCAAAATTAAAATCAGATCGGCAG 59.193 36.000 0.00 0.00 0.00 4.85
38 39 5.576384 GTGCAAAATTAAAATCAGATCGGCA 59.424 36.000 0.00 0.00 0.00 5.69
39 40 5.005682 GGTGCAAAATTAAAATCAGATCGGC 59.994 40.000 0.00 0.00 0.00 5.54
40 41 6.098679 TGGTGCAAAATTAAAATCAGATCGG 58.901 36.000 0.00 0.00 0.00 4.18
41 42 7.329226 AGTTGGTGCAAAATTAAAATCAGATCG 59.671 33.333 0.00 0.00 0.00 3.69
42 43 8.437742 CAGTTGGTGCAAAATTAAAATCAGATC 58.562 33.333 0.00 0.00 0.00 2.75
43 44 8.149647 TCAGTTGGTGCAAAATTAAAATCAGAT 58.850 29.630 0.00 0.00 0.00 2.90
44 45 7.495901 TCAGTTGGTGCAAAATTAAAATCAGA 58.504 30.769 0.00 0.00 0.00 3.27
45 46 7.712264 TCAGTTGGTGCAAAATTAAAATCAG 57.288 32.000 0.00 0.00 0.00 2.90
46 47 7.307870 GCATCAGTTGGTGCAAAATTAAAATCA 60.308 33.333 12.27 0.00 40.94 2.57
47 48 7.017055 GCATCAGTTGGTGCAAAATTAAAATC 58.983 34.615 12.27 0.00 40.94 2.17
48 49 6.711645 AGCATCAGTTGGTGCAAAATTAAAAT 59.288 30.769 18.65 0.00 43.63 1.82
49 50 6.054295 AGCATCAGTTGGTGCAAAATTAAAA 58.946 32.000 18.65 0.00 43.63 1.52
50 51 5.609423 AGCATCAGTTGGTGCAAAATTAAA 58.391 33.333 18.65 0.00 43.63 1.52
51 52 5.212532 AGCATCAGTTGGTGCAAAATTAA 57.787 34.783 18.65 0.00 43.63 1.40
52 53 4.321899 GGAGCATCAGTTGGTGCAAAATTA 60.322 41.667 18.65 0.00 43.01 1.40
53 54 3.555586 GGAGCATCAGTTGGTGCAAAATT 60.556 43.478 18.65 0.00 43.01 1.82
54 55 2.028748 GGAGCATCAGTTGGTGCAAAAT 60.029 45.455 18.65 0.00 43.01 1.82
55 56 1.340889 GGAGCATCAGTTGGTGCAAAA 59.659 47.619 18.65 0.00 43.01 2.44
56 57 0.961019 GGAGCATCAGTTGGTGCAAA 59.039 50.000 18.65 0.00 43.01 3.68
57 58 1.236616 CGGAGCATCAGTTGGTGCAA 61.237 55.000 18.65 0.00 43.61 4.08
58 59 1.672030 CGGAGCATCAGTTGGTGCA 60.672 57.895 18.65 0.00 43.61 4.57
59 60 1.672356 ACGGAGCATCAGTTGGTGC 60.672 57.895 9.30 9.30 42.04 5.01
60 61 4.701663 ACGGAGCATCAGTTGGTG 57.298 55.556 0.00 0.00 42.04 4.17
66 67 2.693069 AGACTGAAAACGGAGCATCAG 58.307 47.619 0.00 0.00 43.79 2.90
67 68 2.839486 AGACTGAAAACGGAGCATCA 57.161 45.000 0.00 0.00 36.25 3.07
68 69 3.365364 CCAAAGACTGAAAACGGAGCATC 60.365 47.826 0.00 0.00 0.00 3.91
69 70 2.554032 CCAAAGACTGAAAACGGAGCAT 59.446 45.455 0.00 0.00 0.00 3.79
70 71 1.946768 CCAAAGACTGAAAACGGAGCA 59.053 47.619 0.00 0.00 0.00 4.26
71 72 2.218603 TCCAAAGACTGAAAACGGAGC 58.781 47.619 0.00 0.00 0.00 4.70
72 73 3.304057 GCTTCCAAAGACTGAAAACGGAG 60.304 47.826 0.00 0.00 0.00 4.63
73 74 2.616842 GCTTCCAAAGACTGAAAACGGA 59.383 45.455 0.00 0.00 0.00 4.69
74 75 2.618709 AGCTTCCAAAGACTGAAAACGG 59.381 45.455 0.00 0.00 0.00 4.44
75 76 3.065371 ACAGCTTCCAAAGACTGAAAACG 59.935 43.478 14.01 0.00 36.67 3.60
76 77 4.354587 CACAGCTTCCAAAGACTGAAAAC 58.645 43.478 14.01 0.00 36.67 2.43
77 78 3.381272 CCACAGCTTCCAAAGACTGAAAA 59.619 43.478 14.01 0.00 36.67 2.29
78 79 2.951642 CCACAGCTTCCAAAGACTGAAA 59.048 45.455 14.01 0.00 36.67 2.69
79 80 2.575532 CCACAGCTTCCAAAGACTGAA 58.424 47.619 14.01 0.00 36.67 3.02
80 81 1.815408 GCCACAGCTTCCAAAGACTGA 60.815 52.381 14.01 0.00 36.67 3.41
81 82 0.595095 GCCACAGCTTCCAAAGACTG 59.405 55.000 0.00 8.56 38.09 3.51
82 83 0.886490 CGCCACAGCTTCCAAAGACT 60.886 55.000 0.00 0.00 36.60 3.24
83 84 1.166531 ACGCCACAGCTTCCAAAGAC 61.167 55.000 0.00 0.00 36.60 3.01
84 85 0.394938 TACGCCACAGCTTCCAAAGA 59.605 50.000 0.00 0.00 36.60 2.52
85 86 1.453155 ATACGCCACAGCTTCCAAAG 58.547 50.000 0.00 0.00 36.60 2.77
86 87 1.810151 GAATACGCCACAGCTTCCAAA 59.190 47.619 0.00 0.00 36.60 3.28
87 88 1.448985 GAATACGCCACAGCTTCCAA 58.551 50.000 0.00 0.00 36.60 3.53
88 89 0.392461 GGAATACGCCACAGCTTCCA 60.392 55.000 0.00 0.00 39.50 3.53
89 90 1.095807 GGGAATACGCCACAGCTTCC 61.096 60.000 0.00 0.00 39.16 3.46
90 91 1.095807 GGGGAATACGCCACAGCTTC 61.096 60.000 0.00 0.00 46.50 3.86
91 92 1.077716 GGGGAATACGCCACAGCTT 60.078 57.895 0.00 0.00 46.50 3.74
92 93 2.590092 GGGGAATACGCCACAGCT 59.410 61.111 0.00 0.00 46.50 4.24
109 110 2.249309 CACGTCACAAGCCGCAAG 59.751 61.111 0.00 0.00 0.00 4.01
110 111 3.947841 GCACGTCACAAGCCGCAA 61.948 61.111 0.00 0.00 0.00 4.85
112 113 4.666532 GTGCACGTCACAAGCCGC 62.667 66.667 0.00 0.00 44.98 6.53
144 148 3.376859 ACGAACACAGATTTGCAAACTGA 59.623 39.130 30.94 9.36 35.85 3.41
164 168 5.920273 ACAAGTTATTGCATGAAAGGAAACG 59.080 36.000 0.00 0.00 40.27 3.60
217 224 2.925966 ATCAAGGGGGAGCATTTTCA 57.074 45.000 0.00 0.00 0.00 2.69
220 227 1.362237 TGGAATCAAGGGGGAGCATTT 59.638 47.619 0.00 0.00 0.00 2.32
221 228 1.009997 TGGAATCAAGGGGGAGCATT 58.990 50.000 0.00 0.00 0.00 3.56
223 230 0.846427 ACTGGAATCAAGGGGGAGCA 60.846 55.000 0.00 0.00 0.00 4.26
224 231 1.141858 CTACTGGAATCAAGGGGGAGC 59.858 57.143 0.00 0.00 0.00 4.70
225 232 1.141858 GCTACTGGAATCAAGGGGGAG 59.858 57.143 0.00 0.00 0.00 4.30
227 234 0.183731 GGCTACTGGAATCAAGGGGG 59.816 60.000 0.00 0.00 0.00 5.40
249 260 1.546029 GGCAAGAAACCTAAAGGCCAG 59.454 52.381 5.01 0.00 39.66 4.85
253 264 3.255888 GGAAGTGGCAAGAAACCTAAAGG 59.744 47.826 0.00 0.00 42.17 3.11
275 293 5.940192 TTTGGAACTATGCTTGTGTGTAG 57.060 39.130 0.00 0.00 0.00 2.74
302 329 5.397534 CGCTACATTCTTGCATCAATAAAGC 59.602 40.000 0.00 1.09 0.00 3.51
435 477 2.877786 GCAACCAAACAAATGGAAAGGG 59.122 45.455 0.00 0.00 43.54 3.95
436 478 3.312146 GTGCAACCAAACAAATGGAAAGG 59.688 43.478 0.00 0.00 43.54 3.11
437 479 4.190772 AGTGCAACCAAACAAATGGAAAG 58.809 39.130 0.00 0.00 43.54 2.62
438 480 4.213564 AGTGCAACCAAACAAATGGAAA 57.786 36.364 0.00 0.00 43.54 3.13
439 481 3.902881 AGTGCAACCAAACAAATGGAA 57.097 38.095 0.00 0.00 43.54 3.53
440 482 3.902881 AAGTGCAACCAAACAAATGGA 57.097 38.095 0.00 0.00 43.54 3.41
441 483 4.155644 ACAAAAGTGCAACCAAACAAATGG 59.844 37.500 0.00 0.00 46.38 3.16
442 484 5.087397 CACAAAAGTGCAACCAAACAAATG 58.913 37.500 0.00 0.00 37.80 2.32
443 485 4.759183 ACACAAAAGTGCAACCAAACAAAT 59.241 33.333 0.00 0.00 37.80 2.32
444 486 4.024556 CACACAAAAGTGCAACCAAACAAA 60.025 37.500 0.00 0.00 37.80 2.83
472 514 4.143410 CGTGTGTGTGTGTGTGTATGTATC 60.143 45.833 0.00 0.00 0.00 2.24
474 516 3.117046 CGTGTGTGTGTGTGTGTATGTA 58.883 45.455 0.00 0.00 0.00 2.29
478 526 1.473278 TCTCGTGTGTGTGTGTGTGTA 59.527 47.619 0.00 0.00 0.00 2.90
495 543 6.927416 ACTGATCATATCTCAGCTCAATCTC 58.073 40.000 10.44 0.00 43.18 2.75
496 544 6.921486 ACTGATCATATCTCAGCTCAATCT 57.079 37.500 10.44 0.00 43.18 2.40
505 561 7.237255 ACTCTGATGGTACTGATCATATCTCA 58.763 38.462 0.00 0.00 0.00 3.27
516 572 5.526506 TCATGATGACTCTGATGGTACTG 57.473 43.478 0.00 0.00 0.00 2.74
609 672 8.445275 TCCGTTTCACAATATAATGTATGCTT 57.555 30.769 0.00 0.00 30.84 3.91
611 674 7.298122 CCTCCGTTTCACAATATAATGTATGC 58.702 38.462 0.00 0.00 30.84 3.14
625 688 5.699458 CACATATAATACCCCTCCGTTTCAC 59.301 44.000 0.00 0.00 0.00 3.18
642 705 8.090831 GCATATCTCTGAAAGTGGACACATATA 58.909 37.037 5.14 0.00 33.76 0.86
643 706 6.933521 GCATATCTCTGAAAGTGGACACATAT 59.066 38.462 5.14 0.00 33.76 1.78
644 707 6.098838 AGCATATCTCTGAAAGTGGACACATA 59.901 38.462 5.14 0.00 33.76 2.29
645 708 5.104610 AGCATATCTCTGAAAGTGGACACAT 60.105 40.000 5.14 0.00 33.76 3.21
649 1088 4.505922 CGAAGCATATCTCTGAAAGTGGAC 59.494 45.833 0.00 0.00 33.76 4.02
705 1144 3.662713 GCAATGCGCTCGATTACATGTAG 60.663 47.826 9.73 0.00 37.77 2.74
706 1145 2.220824 GCAATGCGCTCGATTACATGTA 59.779 45.455 9.73 0.08 37.77 2.29
707 1146 1.003545 GCAATGCGCTCGATTACATGT 60.004 47.619 9.73 2.69 37.77 3.21
755 1198 2.128771 TTCCTTGCTAAGCCATGACC 57.871 50.000 0.00 0.00 0.00 4.02
837 1280 0.238553 GCTGGACGTGAGAAAAAGCC 59.761 55.000 0.00 0.00 0.00 4.35
840 1283 2.270352 ATGGCTGGACGTGAGAAAAA 57.730 45.000 0.00 0.00 0.00 1.94
845 1288 1.811266 CCGAATGGCTGGACGTGAG 60.811 63.158 0.00 0.00 0.00 3.51
850 1293 0.526211 GGTTTTCCGAATGGCTGGAC 59.474 55.000 0.00 0.00 32.95 4.02
916 1359 7.175990 ACGTTTATATTGGCAAGGAGAGAAAAA 59.824 33.333 5.96 0.00 0.00 1.94
2033 2497 3.986006 TGCCGTCGTCCTGACCAC 61.986 66.667 0.00 0.00 45.23 4.16
2140 2613 2.050077 GGCACTGCCTCGTTTTGC 60.050 61.111 13.28 0.00 46.69 3.68
2180 2657 2.433970 TCCATTGCTATCGGTCACATGA 59.566 45.455 0.00 0.00 0.00 3.07
2304 2819 8.492673 TGTCCTTTTGTGAGCTGTAAATATAG 57.507 34.615 0.00 0.00 0.00 1.31
2353 2868 1.048601 AGAGAAACTCACAAGGCCGA 58.951 50.000 0.00 0.00 32.06 5.54
2355 2870 2.810852 CTGAAGAGAAACTCACAAGGCC 59.189 50.000 0.00 0.00 32.06 5.19
2463 2993 2.947652 CCTGTTGATGCCTTGATGGTAG 59.052 50.000 0.00 0.00 38.35 3.18
2488 3018 4.202461 TGAAGTACTTGACCAAGAAGGCAT 60.202 41.667 14.14 0.00 43.14 4.40
2491 3021 4.319177 CCTGAAGTACTTGACCAAGAAGG 58.681 47.826 14.14 0.00 40.79 3.46
2492 3022 4.202367 ACCCTGAAGTACTTGACCAAGAAG 60.202 45.833 14.14 0.00 40.79 2.85
2495 3025 3.771577 ACCCTGAAGTACTTGACCAAG 57.228 47.619 14.14 8.11 43.79 3.61
2516 3046 3.726291 AATACTTTGGCTTGCAAACGT 57.274 38.095 0.00 0.00 0.00 3.99
2523 3053 6.676237 AAACCACAAAAATACTTTGGCTTG 57.324 33.333 2.59 0.00 33.92 4.01
2588 3123 6.773976 TCTTCATCCAAACAACTCAAAGTT 57.226 33.333 0.00 0.00 39.39 2.66
2598 3133 7.669427 ACTGCAATATTTTCTTCATCCAAACA 58.331 30.769 0.00 0.00 0.00 2.83
2695 3232 3.551551 CCAACGCTTTCTCGGTTTTAAG 58.448 45.455 0.00 0.00 0.00 1.85
2757 3295 5.787380 AGCTATCGATTTATGCATCACAGA 58.213 37.500 0.19 0.00 0.00 3.41
2790 3328 1.548986 GTGTACGTGTACGCCCATAC 58.451 55.000 11.67 2.45 44.43 2.39
2796 3356 3.174573 GCCCGTGTACGTGTACGC 61.175 66.667 17.50 12.51 44.43 4.42
2811 3371 2.665185 AGGTCGACGTTTGCAGCC 60.665 61.111 9.92 0.00 0.00 4.85
2829 3389 3.074412 AGGTAGTTAACACATGCACTGC 58.926 45.455 8.61 0.00 0.00 4.40
2985 3566 5.646577 TTTCTCGGTTTTCTTTGGTTTGA 57.353 34.783 0.00 0.00 0.00 2.69
3087 3674 9.762381 AAAACCTAAGTATTTCAATACATGGGA 57.238 29.630 18.74 0.00 41.11 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.