Multiple sequence alignment - TraesCS1B01G413300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G413300 chr1B 100.000 2594 0 0 676 3269 638784309 638781716 0.000000e+00 4791.0
1 TraesCS1B01G413300 chr1B 83.762 1983 177 60 878 2751 638881758 638883704 0.000000e+00 1744.0
2 TraesCS1B01G413300 chr1B 87.907 1290 113 21 1197 2466 638821894 638820628 0.000000e+00 1478.0
3 TraesCS1B01G413300 chr1B 100.000 343 0 0 1 343 638784984 638784642 4.600000e-178 634.0
4 TraesCS1B01G413300 chr1A 92.216 2094 95 33 785 2816 555485421 555483334 0.000000e+00 2902.0
5 TraesCS1B01G413300 chr1A 87.891 1280 123 15 1197 2466 555523114 555521857 0.000000e+00 1476.0
6 TraesCS1B01G413300 chr1A 85.489 1461 138 43 884 2300 555533231 555534661 0.000000e+00 1456.0
7 TraesCS1B01G413300 chr1A 94.718 284 10 3 2987 3269 555483329 555483050 1.390000e-118 436.0
8 TraesCS1B01G413300 chr1A 85.619 299 26 12 1 286 555485707 555485413 6.860000e-77 298.0
9 TraesCS1B01G413300 chr1A 83.465 254 13 3 2525 2751 555534868 555535119 3.310000e-50 209.0
10 TraesCS1B01G413300 chr1D 92.709 2030 81 29 819 2816 463283499 463281505 0.000000e+00 2867.0
11 TraesCS1B01G413300 chr1D 86.310 1534 144 37 878 2367 463341072 463342583 0.000000e+00 1609.0
12 TraesCS1B01G413300 chr1D 87.122 1289 128 17 1197 2466 463326409 463325140 0.000000e+00 1426.0
13 TraesCS1B01G413300 chr1D 94.822 309 9 2 2965 3269 463281514 463281209 2.950000e-130 475.0
14 TraesCS1B01G413300 chr1D 83.984 256 11 12 2525 2751 463342748 463343002 5.490000e-53 219.0
15 TraesCS1B01G413300 chr1D 95.122 82 2 2 9 88 463283983 463283902 9.520000e-26 128.0
16 TraesCS1B01G413300 chr1D 100.000 35 0 0 785 819 463283550 463283516 7.570000e-07 65.8
17 TraesCS1B01G413300 chr1D 89.130 46 5 0 2537 2582 463325015 463324970 1.270000e-04 58.4
18 TraesCS1B01G413300 chr3D 85.653 467 59 4 1450 1910 5809088 5808624 4.900000e-133 484.0
19 TraesCS1B01G413300 chr3D 97.959 147 3 0 2818 2964 521323675 521323821 4.190000e-64 255.0
20 TraesCS1B01G413300 chr4B 99.355 155 0 1 2810 2964 21217981 21217828 2.480000e-71 279.0
21 TraesCS1B01G413300 chr4B 96.644 149 5 0 2816 2964 230006658 230006806 7.000000e-62 248.0
22 TraesCS1B01G413300 chr7B 95.783 166 4 2 2814 2977 121783989 121783825 6.950000e-67 265.0
23 TraesCS1B01G413300 chr7B 97.403 154 4 0 2811 2964 88653673 88653826 2.500000e-66 263.0
24 TraesCS1B01G413300 chr7A 97.987 149 3 0 2816 2964 57986147 57985999 3.240000e-65 259.0
25 TraesCS1B01G413300 chr5B 97.315 149 4 0 2816 2964 493909570 493909718 1.510000e-63 254.0
26 TraesCS1B01G413300 chr5B 96.364 55 2 0 289 343 686047997 686048051 1.250000e-14 91.6
27 TraesCS1B01G413300 chr5B 94.444 54 3 0 288 341 15536925 15536978 2.090000e-12 84.2
28 TraesCS1B01G413300 chr2A 96.667 150 5 0 2816 2965 70011729 70011580 1.950000e-62 250.0
29 TraesCS1B01G413300 chr2A 95.973 149 6 0 2816 2964 775080040 775080188 3.260000e-60 243.0
30 TraesCS1B01G413300 chr3A 84.375 96 15 0 676 771 576204540 576204635 9.660000e-16 95.3
31 TraesCS1B01G413300 chr7D 94.545 55 3 0 289 343 527466957 527466903 5.810000e-13 86.1
32 TraesCS1B01G413300 chr6A 94.545 55 3 0 289 343 558211933 558211879 5.810000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G413300 chr1B 638781716 638784984 3268 True 2712.50 4791 100.00000 1 3269 2 chr1B.!!$R2 3268
1 TraesCS1B01G413300 chr1B 638881758 638883704 1946 False 1744.00 1744 83.76200 878 2751 1 chr1B.!!$F1 1873
2 TraesCS1B01G413300 chr1B 638820628 638821894 1266 True 1478.00 1478 87.90700 1197 2466 1 chr1B.!!$R1 1269
3 TraesCS1B01G413300 chr1A 555521857 555523114 1257 True 1476.00 1476 87.89100 1197 2466 1 chr1A.!!$R1 1269
4 TraesCS1B01G413300 chr1A 555483050 555485707 2657 True 1212.00 2902 90.85100 1 3269 3 chr1A.!!$R2 3268
5 TraesCS1B01G413300 chr1A 555533231 555535119 1888 False 832.50 1456 84.47700 884 2751 2 chr1A.!!$F1 1867
6 TraesCS1B01G413300 chr1D 463341072 463343002 1930 False 914.00 1609 85.14700 878 2751 2 chr1D.!!$F1 1873
7 TraesCS1B01G413300 chr1D 463281209 463283983 2774 True 883.95 2867 95.66325 9 3269 4 chr1D.!!$R1 3260
8 TraesCS1B01G413300 chr1D 463324970 463326409 1439 True 742.20 1426 88.12600 1197 2582 2 chr1D.!!$R2 1385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 546 0.036164 CCATCCGTGTTCCCACTTCA 59.964 55.0 0.0 0.0 39.55 3.02 F
1133 1407 0.176910 TCGCCATCGATTGTTGCCTA 59.823 50.0 0.0 0.0 40.21 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 2469 1.025812 GTCCTCGTCCTGATCATCGT 58.974 55.0 0.0 0.0 0.0 3.73 R
2938 3381 0.033366 TGCTACACACACGATGCAGT 59.967 50.0 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 96 4.454504 TCGATTTGGTTCCAAGCTAACTTC 59.545 41.667 4.44 0.00 32.29 3.01
94 97 4.215399 CGATTTGGTTCCAAGCTAACTTCA 59.785 41.667 4.44 0.00 32.29 3.02
95 98 5.278266 CGATTTGGTTCCAAGCTAACTTCAA 60.278 40.000 4.44 0.00 32.29 2.69
96 99 5.923733 TTTGGTTCCAAGCTAACTTCAAA 57.076 34.783 4.44 0.00 32.29 2.69
193 394 8.539770 TTTTGAAAACAGTACATGCAAAAGAA 57.460 26.923 0.00 0.00 32.19 2.52
195 396 6.039616 TGAAAACAGTACATGCAAAAGAACC 58.960 36.000 0.00 0.00 0.00 3.62
260 468 6.707290 TCATTTCCTGGTCTTCTCGAAATAA 58.293 36.000 0.00 0.00 32.76 1.40
262 470 8.482943 TCATTTCCTGGTCTTCTCGAAATAATA 58.517 33.333 0.00 0.00 32.76 0.98
288 496 4.837093 TTTCTAGGTGATGGTTACCCAG 57.163 45.455 0.00 0.00 46.15 4.45
289 497 3.769189 TCTAGGTGATGGTTACCCAGA 57.231 47.619 0.00 0.00 46.15 3.86
290 498 4.280789 TCTAGGTGATGGTTACCCAGAT 57.719 45.455 0.00 0.00 46.15 2.90
291 499 4.223953 TCTAGGTGATGGTTACCCAGATC 58.776 47.826 0.00 0.00 46.15 2.75
292 500 2.127708 AGGTGATGGTTACCCAGATCC 58.872 52.381 0.00 0.00 46.15 3.36
293 501 1.202651 GGTGATGGTTACCCAGATCCG 60.203 57.143 0.00 0.00 46.15 4.18
294 502 1.128200 TGATGGTTACCCAGATCCGG 58.872 55.000 0.00 0.00 46.15 5.14
295 503 0.250338 GATGGTTACCCAGATCCGGC 60.250 60.000 0.00 0.00 46.15 6.13
296 504 0.694444 ATGGTTACCCAGATCCGGCT 60.694 55.000 0.00 0.00 46.15 5.52
297 505 0.912487 TGGTTACCCAGATCCGGCTT 60.912 55.000 0.00 0.00 35.17 4.35
298 506 0.463833 GGTTACCCAGATCCGGCTTG 60.464 60.000 0.00 0.00 0.00 4.01
299 507 1.095807 GTTACCCAGATCCGGCTTGC 61.096 60.000 0.00 0.00 0.00 4.01
300 508 1.271840 TTACCCAGATCCGGCTTGCT 61.272 55.000 0.00 0.00 0.00 3.91
301 509 1.271840 TACCCAGATCCGGCTTGCTT 61.272 55.000 0.00 0.00 0.00 3.91
302 510 2.117156 CCCAGATCCGGCTTGCTTG 61.117 63.158 0.00 0.00 0.00 4.01
303 511 2.768492 CCAGATCCGGCTTGCTTGC 61.768 63.158 0.00 0.00 0.00 4.01
304 512 1.748122 CAGATCCGGCTTGCTTGCT 60.748 57.895 0.00 0.00 0.00 3.91
305 513 1.451028 AGATCCGGCTTGCTTGCTC 60.451 57.895 0.00 0.00 0.00 4.26
306 514 2.439156 ATCCGGCTTGCTTGCTCC 60.439 61.111 0.00 0.00 0.00 4.70
307 515 4.722700 TCCGGCTTGCTTGCTCCC 62.723 66.667 0.00 0.00 0.00 4.30
308 516 4.729918 CCGGCTTGCTTGCTCCCT 62.730 66.667 0.00 0.00 0.00 4.20
309 517 3.130160 CGGCTTGCTTGCTCCCTC 61.130 66.667 1.96 0.00 0.00 4.30
310 518 2.753446 GGCTTGCTTGCTCCCTCC 60.753 66.667 1.96 0.00 0.00 4.30
311 519 2.753446 GCTTGCTTGCTCCCTCCC 60.753 66.667 0.00 0.00 0.00 4.30
312 520 2.044551 CTTGCTTGCTCCCTCCCC 60.045 66.667 0.00 0.00 0.00 4.81
313 521 2.858476 TTGCTTGCTCCCTCCCCA 60.858 61.111 0.00 0.00 0.00 4.96
314 522 2.220786 CTTGCTTGCTCCCTCCCCAT 62.221 60.000 0.00 0.00 0.00 4.00
315 523 2.123982 GCTTGCTCCCTCCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
316 524 2.123982 CTTGCTCCCTCCCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
317 525 2.614969 TTGCTCCCTCCCCATGCT 60.615 61.111 0.00 0.00 0.00 3.79
318 526 1.307778 TTGCTCCCTCCCCATGCTA 60.308 57.895 0.00 0.00 0.00 3.49
319 527 1.635817 TTGCTCCCTCCCCATGCTAC 61.636 60.000 0.00 0.00 0.00 3.58
320 528 2.823758 GCTCCCTCCCCATGCTACC 61.824 68.421 0.00 0.00 0.00 3.18
321 529 1.384502 CTCCCTCCCCATGCTACCA 60.385 63.158 0.00 0.00 0.00 3.25
322 530 0.769776 CTCCCTCCCCATGCTACCAT 60.770 60.000 0.00 0.00 0.00 3.55
323 531 0.768221 TCCCTCCCCATGCTACCATC 60.768 60.000 0.00 0.00 0.00 3.51
324 532 1.763770 CCTCCCCATGCTACCATCC 59.236 63.158 0.00 0.00 0.00 3.51
325 533 1.372683 CTCCCCATGCTACCATCCG 59.627 63.158 0.00 0.00 0.00 4.18
326 534 1.383943 TCCCCATGCTACCATCCGT 60.384 57.895 0.00 0.00 0.00 4.69
327 535 1.227943 CCCCATGCTACCATCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
328 536 1.526887 CCCATGCTACCATCCGTGT 59.473 57.895 0.00 0.00 0.00 4.49
329 537 0.107214 CCCATGCTACCATCCGTGTT 60.107 55.000 0.00 0.00 0.00 3.32
330 538 1.299541 CCATGCTACCATCCGTGTTC 58.700 55.000 0.00 0.00 0.00 3.18
331 539 1.299541 CATGCTACCATCCGTGTTCC 58.700 55.000 0.00 0.00 0.00 3.62
332 540 0.180406 ATGCTACCATCCGTGTTCCC 59.820 55.000 0.00 0.00 0.00 3.97
333 541 1.195442 TGCTACCATCCGTGTTCCCA 61.195 55.000 0.00 0.00 0.00 4.37
334 542 0.743345 GCTACCATCCGTGTTCCCAC 60.743 60.000 0.00 0.00 38.27 4.61
335 543 0.902531 CTACCATCCGTGTTCCCACT 59.097 55.000 0.00 0.00 39.55 4.00
336 544 1.278127 CTACCATCCGTGTTCCCACTT 59.722 52.381 0.00 0.00 39.55 3.16
337 545 0.036306 ACCATCCGTGTTCCCACTTC 59.964 55.000 0.00 0.00 39.55 3.01
338 546 0.036164 CCATCCGTGTTCCCACTTCA 59.964 55.000 0.00 0.00 39.55 3.02
339 547 1.340017 CCATCCGTGTTCCCACTTCAT 60.340 52.381 0.00 0.00 39.55 2.57
340 548 2.009774 CATCCGTGTTCCCACTTCATC 58.990 52.381 0.00 0.00 39.55 2.92
341 549 0.323629 TCCGTGTTCCCACTTCATCC 59.676 55.000 0.00 0.00 39.55 3.51
342 550 0.324943 CCGTGTTCCCACTTCATCCT 59.675 55.000 0.00 0.00 39.55 3.24
704 912 4.150897 TCATCCCCTGATTTTAACGAGG 57.849 45.455 0.00 0.00 0.00 4.63
705 913 3.521937 TCATCCCCTGATTTTAACGAGGT 59.478 43.478 0.00 0.00 0.00 3.85
706 914 3.343941 TCCCCTGATTTTAACGAGGTG 57.656 47.619 0.00 0.00 0.00 4.00
707 915 2.026636 TCCCCTGATTTTAACGAGGTGG 60.027 50.000 0.00 0.00 0.00 4.61
708 916 2.365582 CCCTGATTTTAACGAGGTGGG 58.634 52.381 0.00 0.00 0.00 4.61
709 917 2.290705 CCCTGATTTTAACGAGGTGGGT 60.291 50.000 0.00 0.00 0.00 4.51
710 918 3.007635 CCTGATTTTAACGAGGTGGGTC 58.992 50.000 0.00 0.00 0.00 4.46
711 919 3.007635 CTGATTTTAACGAGGTGGGTCC 58.992 50.000 0.00 0.00 0.00 4.46
712 920 2.004733 GATTTTAACGAGGTGGGTCCG 58.995 52.381 0.00 0.00 41.99 4.79
713 921 1.047002 TTTTAACGAGGTGGGTCCGA 58.953 50.000 0.00 0.00 41.99 4.55
714 922 0.604578 TTTAACGAGGTGGGTCCGAG 59.395 55.000 0.00 0.00 41.99 4.63
715 923 0.540365 TTAACGAGGTGGGTCCGAGT 60.540 55.000 0.00 0.00 41.99 4.18
716 924 0.962356 TAACGAGGTGGGTCCGAGTC 60.962 60.000 0.00 0.00 41.99 3.36
717 925 2.361357 CGAGGTGGGTCCGAGTCT 60.361 66.667 0.00 0.00 41.99 3.24
718 926 1.977544 CGAGGTGGGTCCGAGTCTT 60.978 63.158 0.00 0.00 41.99 3.01
719 927 0.679002 CGAGGTGGGTCCGAGTCTTA 60.679 60.000 0.00 0.00 41.99 2.10
720 928 1.777941 GAGGTGGGTCCGAGTCTTAT 58.222 55.000 0.00 0.00 41.99 1.73
721 929 2.108970 GAGGTGGGTCCGAGTCTTATT 58.891 52.381 0.00 0.00 41.99 1.40
722 930 2.500504 GAGGTGGGTCCGAGTCTTATTT 59.499 50.000 0.00 0.00 41.99 1.40
723 931 2.910977 AGGTGGGTCCGAGTCTTATTTT 59.089 45.455 0.00 0.00 41.99 1.82
724 932 3.007635 GGTGGGTCCGAGTCTTATTTTG 58.992 50.000 0.00 0.00 0.00 2.44
725 933 3.558533 GGTGGGTCCGAGTCTTATTTTGT 60.559 47.826 0.00 0.00 0.00 2.83
726 934 4.070009 GTGGGTCCGAGTCTTATTTTGTT 58.930 43.478 0.00 0.00 0.00 2.83
727 935 4.153655 GTGGGTCCGAGTCTTATTTTGTTC 59.846 45.833 0.00 0.00 0.00 3.18
728 936 3.688185 GGGTCCGAGTCTTATTTTGTTCC 59.312 47.826 0.00 0.00 0.00 3.62
729 937 4.320870 GGTCCGAGTCTTATTTTGTTCCA 58.679 43.478 0.00 0.00 0.00 3.53
730 938 4.758165 GGTCCGAGTCTTATTTTGTTCCAA 59.242 41.667 0.00 0.00 0.00 3.53
731 939 5.414765 GGTCCGAGTCTTATTTTGTTCCAAT 59.585 40.000 0.00 0.00 0.00 3.16
732 940 6.403309 GGTCCGAGTCTTATTTTGTTCCAATC 60.403 42.308 0.00 0.00 0.00 2.67
733 941 5.350365 TCCGAGTCTTATTTTGTTCCAATCG 59.650 40.000 0.00 0.00 0.00 3.34
734 942 5.350365 CCGAGTCTTATTTTGTTCCAATCGA 59.650 40.000 0.00 0.00 0.00 3.59
735 943 6.128391 CCGAGTCTTATTTTGTTCCAATCGAA 60.128 38.462 0.00 0.00 0.00 3.71
736 944 7.414098 CCGAGTCTTATTTTGTTCCAATCGAAT 60.414 37.037 0.00 0.00 31.67 3.34
737 945 7.636359 CGAGTCTTATTTTGTTCCAATCGAATC 59.364 37.037 0.00 0.00 31.67 2.52
738 946 8.335532 AGTCTTATTTTGTTCCAATCGAATCA 57.664 30.769 0.00 0.00 31.67 2.57
739 947 8.792633 AGTCTTATTTTGTTCCAATCGAATCAA 58.207 29.630 0.00 0.00 31.67 2.57
740 948 8.850452 GTCTTATTTTGTTCCAATCGAATCAAC 58.150 33.333 0.00 0.00 31.67 3.18
741 949 8.026607 TCTTATTTTGTTCCAATCGAATCAACC 58.973 33.333 0.00 0.00 31.67 3.77
742 950 4.513198 TTTGTTCCAATCGAATCAACCC 57.487 40.909 0.00 0.00 31.67 4.11
743 951 3.147553 TGTTCCAATCGAATCAACCCA 57.852 42.857 0.00 0.00 31.67 4.51
744 952 2.817258 TGTTCCAATCGAATCAACCCAC 59.183 45.455 0.00 0.00 31.67 4.61
745 953 1.732941 TCCAATCGAATCAACCCACG 58.267 50.000 0.00 0.00 0.00 4.94
746 954 1.002659 TCCAATCGAATCAACCCACGT 59.997 47.619 0.00 0.00 0.00 4.49
747 955 2.234168 TCCAATCGAATCAACCCACGTA 59.766 45.455 0.00 0.00 0.00 3.57
748 956 3.004171 CCAATCGAATCAACCCACGTAA 58.996 45.455 0.00 0.00 0.00 3.18
749 957 8.521206 GTTCCAATCGAATCAACCCACGTAAG 62.521 46.154 0.00 0.00 36.54 2.34
750 958 1.717194 TCGAATCAACCCACGTAAGC 58.283 50.000 0.00 0.00 45.62 3.09
751 959 0.368907 CGAATCAACCCACGTAAGCG 59.631 55.000 0.00 0.00 45.62 4.68
752 960 0.725117 GAATCAACCCACGTAAGCGG 59.275 55.000 0.00 0.00 43.45 5.52
753 961 0.322322 AATCAACCCACGTAAGCGGA 59.678 50.000 0.00 0.00 44.09 5.54
754 962 0.322322 ATCAACCCACGTAAGCGGAA 59.678 50.000 0.00 0.00 44.09 4.30
755 963 0.320073 TCAACCCACGTAAGCGGAAG 60.320 55.000 0.00 0.00 44.09 3.46
773 981 4.340019 CACAAATGGGCGCACGCA 62.340 61.111 17.69 0.00 44.11 5.24
774 982 3.600694 ACAAATGGGCGCACGCAA 61.601 55.556 17.69 4.68 42.66 4.85
775 983 2.806198 CAAATGGGCGCACGCAAG 60.806 61.111 17.69 0.00 42.66 4.01
849 1074 6.599244 TCATCTGTTCACATGAGTAATTTCCC 59.401 38.462 0.00 0.00 0.00 3.97
882 1107 6.021596 CGTGATCAGTTAGTGCCAAAATAAC 58.978 40.000 0.00 0.00 0.00 1.89
977 1203 1.284715 CGCCGTGAAAAACCTTCCC 59.715 57.895 0.00 0.00 0.00 3.97
992 1218 2.040278 CCTTCCCTGAATTCTCCACACA 59.960 50.000 7.05 0.00 0.00 3.72
1002 1228 2.078849 TCTCCACACACTACGCAATG 57.921 50.000 0.00 0.00 0.00 2.82
1051 1283 1.080839 CAACCACAAAATCGCCCCG 60.081 57.895 0.00 0.00 0.00 5.73
1084 1316 2.519377 TACATACATGCCGCCTACAC 57.481 50.000 0.00 0.00 0.00 2.90
1113 1345 2.341543 CGCCCATCTCCATCTCCG 59.658 66.667 0.00 0.00 0.00 4.63
1133 1407 0.176910 TCGCCATCGATTGTTGCCTA 59.823 50.000 0.00 0.00 40.21 3.93
1134 1408 0.304705 CGCCATCGATTGTTGCCTAC 59.695 55.000 0.00 0.00 38.10 3.18
1135 1409 1.668419 GCCATCGATTGTTGCCTACT 58.332 50.000 0.00 0.00 0.00 2.57
1136 1410 2.801699 CGCCATCGATTGTTGCCTACTA 60.802 50.000 0.00 0.00 38.10 1.82
1137 1411 2.544267 GCCATCGATTGTTGCCTACTAC 59.456 50.000 0.00 0.00 0.00 2.73
1138 1412 3.741388 GCCATCGATTGTTGCCTACTACT 60.741 47.826 0.00 0.00 0.00 2.57
1139 1413 4.051922 CCATCGATTGTTGCCTACTACTC 58.948 47.826 0.00 0.00 0.00 2.59
1140 1414 4.441495 CCATCGATTGTTGCCTACTACTCA 60.441 45.833 0.00 0.00 0.00 3.41
1141 1415 4.106029 TCGATTGTTGCCTACTACTCAC 57.894 45.455 0.00 0.00 0.00 3.51
1142 1416 3.762288 TCGATTGTTGCCTACTACTCACT 59.238 43.478 0.00 0.00 0.00 3.41
1143 1417 4.106197 CGATTGTTGCCTACTACTCACTC 58.894 47.826 0.00 0.00 0.00 3.51
1144 1418 3.955650 TTGTTGCCTACTACTCACTCC 57.044 47.619 0.00 0.00 0.00 3.85
1145 1419 2.176889 TGTTGCCTACTACTCACTCCC 58.823 52.381 0.00 0.00 0.00 4.30
1146 1420 2.225293 TGTTGCCTACTACTCACTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
1147 1421 2.832733 GTTGCCTACTACTCACTCCCTT 59.167 50.000 0.00 0.00 0.00 3.95
1301 1593 0.458025 CTGTCCCGGTTCTACTTCGC 60.458 60.000 0.00 0.00 0.00 4.70
2171 2469 3.244561 ACCAAGATCAAGAAGAAAGCCGA 60.245 43.478 0.00 0.00 0.00 5.54
2424 2756 2.665649 TGCATTAGGTGTAGACGTGG 57.334 50.000 0.00 0.00 0.00 4.94
2442 2778 1.670295 TGGCATGCATGTTACATCGAC 59.330 47.619 26.79 7.51 0.00 4.20
2523 2931 2.158769 TGGTGGGCTGCTATGTATCTTG 60.159 50.000 0.00 0.00 0.00 3.02
2551 2961 1.661480 CACTTGCATGGGTGTGTGG 59.339 57.895 4.44 0.00 0.00 4.17
2693 3136 1.270839 GGCCTGCTCTGAAACTGTGTA 60.271 52.381 0.00 0.00 0.00 2.90
2695 3138 3.077359 GCCTGCTCTGAAACTGTGTAAT 58.923 45.455 0.00 0.00 0.00 1.89
2760 3203 3.503363 ACTGTGTGTACATTCCTGCATTG 59.497 43.478 0.00 0.00 35.97 2.82
2816 3259 5.403766 GCACCATCACTTATCTTAGACATCG 59.596 44.000 0.00 0.00 0.00 3.84
2817 3260 6.735968 GCACCATCACTTATCTTAGACATCGA 60.736 42.308 0.00 0.00 0.00 3.59
2818 3261 7.203218 CACCATCACTTATCTTAGACATCGAA 58.797 38.462 0.00 0.00 0.00 3.71
2819 3262 7.706607 CACCATCACTTATCTTAGACATCGAAA 59.293 37.037 0.00 0.00 0.00 3.46
2820 3263 8.424918 ACCATCACTTATCTTAGACATCGAAAT 58.575 33.333 0.00 0.00 0.00 2.17
2821 3264 9.265901 CCATCACTTATCTTAGACATCGAAATT 57.734 33.333 0.00 0.00 0.00 1.82
2823 3266 8.131455 TCACTTATCTTAGACATCGAAATTGC 57.869 34.615 0.00 0.00 0.00 3.56
2824 3267 7.981789 TCACTTATCTTAGACATCGAAATTGCT 59.018 33.333 0.00 0.00 0.00 3.91
2825 3268 8.272176 CACTTATCTTAGACATCGAAATTGCTC 58.728 37.037 0.00 0.00 0.00 4.26
2826 3269 7.439655 ACTTATCTTAGACATCGAAATTGCTCC 59.560 37.037 0.00 0.00 0.00 4.70
2827 3270 5.084818 TCTTAGACATCGAAATTGCTCCA 57.915 39.130 0.00 0.00 0.00 3.86
2828 3271 5.674525 TCTTAGACATCGAAATTGCTCCAT 58.325 37.500 0.00 0.00 0.00 3.41
2829 3272 5.525012 TCTTAGACATCGAAATTGCTCCATG 59.475 40.000 0.00 0.00 0.00 3.66
2830 3273 2.357009 AGACATCGAAATTGCTCCATGC 59.643 45.455 0.00 0.00 43.25 4.06
2839 3282 3.654201 GCTCCATGCACGACACAA 58.346 55.556 0.00 0.00 42.31 3.33
2840 3283 1.499056 GCTCCATGCACGACACAAG 59.501 57.895 0.00 0.00 42.31 3.16
2841 3284 1.230635 GCTCCATGCACGACACAAGT 61.231 55.000 0.00 0.00 42.31 3.16
2842 3285 0.514255 CTCCATGCACGACACAAGTG 59.486 55.000 0.00 0.00 42.15 3.16
2843 3286 0.105778 TCCATGCACGACACAAGTGA 59.894 50.000 7.28 0.00 41.83 3.41
2844 3287 0.235665 CCATGCACGACACAAGTGAC 59.764 55.000 7.28 0.00 41.83 3.67
2845 3288 0.235665 CATGCACGACACAAGTGACC 59.764 55.000 7.28 0.00 41.83 4.02
2846 3289 1.221466 ATGCACGACACAAGTGACCG 61.221 55.000 7.28 11.71 41.83 4.79
2847 3290 1.590525 GCACGACACAAGTGACCGA 60.591 57.895 19.73 0.00 41.83 4.69
2848 3291 0.944311 GCACGACACAAGTGACCGAT 60.944 55.000 19.73 7.43 41.83 4.18
2849 3292 1.060713 CACGACACAAGTGACCGATC 58.939 55.000 19.73 3.21 41.83 3.69
2850 3293 0.959553 ACGACACAAGTGACCGATCT 59.040 50.000 19.73 2.80 35.51 2.75
2851 3294 2.095415 CACGACACAAGTGACCGATCTA 60.095 50.000 19.73 0.00 41.83 1.98
2852 3295 2.753452 ACGACACAAGTGACCGATCTAT 59.247 45.455 19.73 2.27 35.51 1.98
2853 3296 3.108881 CGACACAAGTGACCGATCTATG 58.891 50.000 7.28 0.00 34.30 2.23
2854 3297 2.860735 GACACAAGTGACCGATCTATGC 59.139 50.000 7.28 0.00 0.00 3.14
2855 3298 2.233676 ACACAAGTGACCGATCTATGCA 59.766 45.455 7.28 0.00 0.00 3.96
2856 3299 2.604914 CACAAGTGACCGATCTATGCAC 59.395 50.000 0.00 0.00 0.00 4.57
2857 3300 1.854743 CAAGTGACCGATCTATGCACG 59.145 52.381 0.00 0.00 34.82 5.34
2858 3301 1.389555 AGTGACCGATCTATGCACGA 58.610 50.000 0.00 0.00 34.82 4.35
2859 3302 1.065701 AGTGACCGATCTATGCACGAC 59.934 52.381 0.00 0.00 34.82 4.34
2860 3303 1.099689 TGACCGATCTATGCACGACA 58.900 50.000 0.00 0.00 0.00 4.35
2861 3304 1.202256 TGACCGATCTATGCACGACAC 60.202 52.381 0.00 0.00 0.00 3.67
2862 3305 0.248498 ACCGATCTATGCACGACACG 60.248 55.000 0.00 0.00 0.00 4.49
2863 3306 0.248498 CCGATCTATGCACGACACGT 60.248 55.000 0.00 0.00 42.36 4.49
2864 3307 1.003223 CCGATCTATGCACGACACGTA 60.003 52.381 0.00 0.00 38.32 3.57
2865 3308 2.540157 CCGATCTATGCACGACACGTAA 60.540 50.000 0.00 0.00 38.32 3.18
2866 3309 3.103007 CGATCTATGCACGACACGTAAA 58.897 45.455 0.00 0.00 38.32 2.01
2867 3310 3.729217 CGATCTATGCACGACACGTAAAT 59.271 43.478 0.00 0.00 38.32 1.40
2868 3311 4.143803 CGATCTATGCACGACACGTAAATC 60.144 45.833 0.00 0.00 38.32 2.17
2869 3312 3.441163 TCTATGCACGACACGTAAATCC 58.559 45.455 0.00 0.00 38.32 3.01
2870 3313 2.087501 ATGCACGACACGTAAATCCA 57.912 45.000 0.00 0.00 38.32 3.41
2871 3314 1.424403 TGCACGACACGTAAATCCAG 58.576 50.000 0.00 0.00 38.32 3.86
2872 3315 0.094730 GCACGACACGTAAATCCAGC 59.905 55.000 0.00 0.00 38.32 4.85
2873 3316 0.365523 CACGACACGTAAATCCAGCG 59.634 55.000 0.00 0.00 38.32 5.18
2874 3317 0.734942 ACGACACGTAAATCCAGCGG 60.735 55.000 0.00 0.00 38.73 5.52
2875 3318 1.713830 GACACGTAAATCCAGCGGC 59.286 57.895 0.00 0.00 0.00 6.53
2876 3319 1.702491 GACACGTAAATCCAGCGGCC 61.702 60.000 0.00 0.00 0.00 6.13
2877 3320 2.510691 ACGTAAATCCAGCGGCCG 60.511 61.111 24.05 24.05 0.00 6.13
2878 3321 2.202824 CGTAAATCCAGCGGCCGA 60.203 61.111 33.48 8.40 0.00 5.54
2879 3322 2.522638 CGTAAATCCAGCGGCCGAC 61.523 63.158 33.48 20.78 0.00 4.79
2891 3334 2.125106 GCCGACGCCCTTCTCAAT 60.125 61.111 0.00 0.00 0.00 2.57
2892 3335 2.174319 GCCGACGCCCTTCTCAATC 61.174 63.158 0.00 0.00 0.00 2.67
2893 3336 1.218047 CCGACGCCCTTCTCAATCA 59.782 57.895 0.00 0.00 0.00 2.57
2894 3337 0.391130 CCGACGCCCTTCTCAATCAA 60.391 55.000 0.00 0.00 0.00 2.57
2895 3338 0.721718 CGACGCCCTTCTCAATCAAC 59.278 55.000 0.00 0.00 0.00 3.18
2896 3339 0.721718 GACGCCCTTCTCAATCAACG 59.278 55.000 0.00 0.00 0.00 4.10
2897 3340 0.034896 ACGCCCTTCTCAATCAACGT 59.965 50.000 0.00 0.00 0.00 3.99
2898 3341 1.156736 CGCCCTTCTCAATCAACGTT 58.843 50.000 0.00 0.00 0.00 3.99
2899 3342 1.535462 CGCCCTTCTCAATCAACGTTT 59.465 47.619 0.00 0.00 0.00 3.60
2900 3343 2.665519 CGCCCTTCTCAATCAACGTTTG 60.666 50.000 0.00 0.00 0.00 2.93
2901 3344 2.293399 GCCCTTCTCAATCAACGTTTGT 59.707 45.455 0.00 0.00 0.00 2.83
2902 3345 3.609409 GCCCTTCTCAATCAACGTTTGTC 60.609 47.826 0.00 0.00 0.00 3.18
2903 3346 3.058224 CCCTTCTCAATCAACGTTTGTCC 60.058 47.826 0.00 0.00 0.00 4.02
2904 3347 3.363970 CCTTCTCAATCAACGTTTGTCCG 60.364 47.826 0.00 0.00 0.00 4.79
2905 3348 2.139917 TCTCAATCAACGTTTGTCCGG 58.860 47.619 0.00 0.00 0.00 5.14
2906 3349 0.589223 TCAATCAACGTTTGTCCGGC 59.411 50.000 0.00 0.00 0.00 6.13
2907 3350 0.386731 CAATCAACGTTTGTCCGGCC 60.387 55.000 0.00 0.00 0.00 6.13
2908 3351 0.820074 AATCAACGTTTGTCCGGCCA 60.820 50.000 2.24 0.00 0.00 5.36
2909 3352 1.234615 ATCAACGTTTGTCCGGCCAG 61.235 55.000 2.24 0.00 0.00 4.85
2910 3353 1.890041 CAACGTTTGTCCGGCCAGA 60.890 57.895 2.24 0.00 0.00 3.86
2911 3354 1.072505 AACGTTTGTCCGGCCAGAT 59.927 52.632 2.24 0.00 0.00 2.90
2912 3355 0.536460 AACGTTTGTCCGGCCAGATT 60.536 50.000 2.24 0.00 0.00 2.40
2913 3356 0.536460 ACGTTTGTCCGGCCAGATTT 60.536 50.000 2.24 0.00 0.00 2.17
2914 3357 1.270947 ACGTTTGTCCGGCCAGATTTA 60.271 47.619 2.24 0.00 0.00 1.40
2915 3358 1.807742 CGTTTGTCCGGCCAGATTTAA 59.192 47.619 2.24 0.00 0.00 1.52
2916 3359 2.422127 CGTTTGTCCGGCCAGATTTAAT 59.578 45.455 2.24 0.00 0.00 1.40
2917 3360 3.486875 CGTTTGTCCGGCCAGATTTAATC 60.487 47.826 2.24 0.00 0.00 1.75
2918 3361 2.341846 TGTCCGGCCAGATTTAATCC 57.658 50.000 2.24 0.00 0.00 3.01
2919 3362 1.562008 TGTCCGGCCAGATTTAATCCA 59.438 47.619 2.24 0.00 0.00 3.41
2920 3363 2.174639 TGTCCGGCCAGATTTAATCCAT 59.825 45.455 2.24 0.00 0.00 3.41
2921 3364 2.814336 GTCCGGCCAGATTTAATCCATC 59.186 50.000 2.24 0.00 0.00 3.51
2922 3365 1.806542 CCGGCCAGATTTAATCCATCG 59.193 52.381 2.24 1.77 0.00 3.84
2923 3366 2.494059 CGGCCAGATTTAATCCATCGT 58.506 47.619 2.24 0.00 0.00 3.73
2924 3367 2.480419 CGGCCAGATTTAATCCATCGTC 59.520 50.000 2.24 0.00 0.00 4.20
2925 3368 3.744660 GGCCAGATTTAATCCATCGTCT 58.255 45.455 0.00 0.00 0.00 4.18
2926 3369 3.499918 GGCCAGATTTAATCCATCGTCTG 59.500 47.826 0.00 0.00 34.39 3.51
2927 3370 4.130118 GCCAGATTTAATCCATCGTCTGT 58.870 43.478 0.78 0.00 33.12 3.41
2928 3371 4.024556 GCCAGATTTAATCCATCGTCTGTG 60.025 45.833 0.78 0.00 33.12 3.66
2929 3372 4.024556 CCAGATTTAATCCATCGTCTGTGC 60.025 45.833 0.78 0.00 33.12 4.57
2930 3373 4.571984 CAGATTTAATCCATCGTCTGTGCA 59.428 41.667 0.78 0.00 0.00 4.57
2931 3374 5.237996 CAGATTTAATCCATCGTCTGTGCAT 59.762 40.000 0.78 0.00 0.00 3.96
2932 3375 5.468072 AGATTTAATCCATCGTCTGTGCATC 59.532 40.000 0.78 0.00 0.00 3.91
2933 3376 1.575244 AATCCATCGTCTGTGCATCG 58.425 50.000 0.00 0.00 0.00 3.84
2934 3377 0.461548 ATCCATCGTCTGTGCATCGT 59.538 50.000 0.00 0.00 0.00 3.73
2935 3378 0.179137 TCCATCGTCTGTGCATCGTC 60.179 55.000 0.00 0.00 0.00 4.20
2936 3379 1.148157 CCATCGTCTGTGCATCGTCC 61.148 60.000 0.00 0.00 0.00 4.79
2937 3380 0.458370 CATCGTCTGTGCATCGTCCA 60.458 55.000 0.00 0.00 0.00 4.02
2938 3381 0.246360 ATCGTCTGTGCATCGTCCAA 59.754 50.000 0.00 0.00 0.00 3.53
2939 3382 0.666274 TCGTCTGTGCATCGTCCAAC 60.666 55.000 0.00 0.00 0.00 3.77
2940 3383 0.667487 CGTCTGTGCATCGTCCAACT 60.667 55.000 0.00 0.00 0.00 3.16
2941 3384 0.792640 GTCTGTGCATCGTCCAACTG 59.207 55.000 0.00 0.00 0.00 3.16
2942 3385 0.950555 TCTGTGCATCGTCCAACTGC 60.951 55.000 0.00 0.00 36.45 4.40
2943 3386 1.227793 TGTGCATCGTCCAACTGCA 60.228 52.632 0.00 0.00 43.20 4.41
2944 3387 0.606130 TGTGCATCGTCCAACTGCAT 60.606 50.000 0.00 0.00 46.52 3.96
2945 3388 0.097674 GTGCATCGTCCAACTGCATC 59.902 55.000 0.00 0.00 46.52 3.91
2946 3389 1.349627 GCATCGTCCAACTGCATCG 59.650 57.895 0.00 0.00 35.96 3.84
2947 3390 1.361668 GCATCGTCCAACTGCATCGT 61.362 55.000 0.00 0.00 35.96 3.73
2948 3391 0.371301 CATCGTCCAACTGCATCGTG 59.629 55.000 0.00 0.00 0.00 4.35
2949 3392 0.037326 ATCGTCCAACTGCATCGTGT 60.037 50.000 0.00 0.00 0.00 4.49
2950 3393 0.943835 TCGTCCAACTGCATCGTGTG 60.944 55.000 0.00 0.00 0.00 3.82
2951 3394 1.221466 CGTCCAACTGCATCGTGTGT 61.221 55.000 0.00 0.00 0.00 3.72
2952 3395 0.235665 GTCCAACTGCATCGTGTGTG 59.764 55.000 0.00 0.00 0.00 3.82
2953 3396 0.179059 TCCAACTGCATCGTGTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
2954 3397 1.069358 TCCAACTGCATCGTGTGTGTA 59.931 47.619 0.00 0.00 0.00 2.90
2955 3398 1.460743 CCAACTGCATCGTGTGTGTAG 59.539 52.381 0.00 0.00 35.72 2.74
2956 3399 1.136252 CAACTGCATCGTGTGTGTAGC 60.136 52.381 0.00 0.00 33.30 3.58
2957 3400 0.033366 ACTGCATCGTGTGTGTAGCA 59.967 50.000 0.00 0.00 33.30 3.49
2958 3401 1.147473 CTGCATCGTGTGTGTAGCAA 58.853 50.000 0.00 0.00 0.00 3.91
2959 3402 1.127397 CTGCATCGTGTGTGTAGCAAG 59.873 52.381 0.00 0.00 0.00 4.01
2960 3403 1.270041 TGCATCGTGTGTGTAGCAAGA 60.270 47.619 0.00 0.00 0.00 3.02
2961 3404 1.126846 GCATCGTGTGTGTAGCAAGAC 59.873 52.381 0.00 0.00 0.00 3.01
2962 3405 2.677199 CATCGTGTGTGTAGCAAGACT 58.323 47.619 0.00 0.00 0.00 3.24
2963 3406 2.417339 TCGTGTGTGTAGCAAGACTC 57.583 50.000 0.00 0.00 0.00 3.36
2964 3407 1.000607 TCGTGTGTGTAGCAAGACTCC 60.001 52.381 0.00 0.00 0.00 3.85
2965 3408 1.000163 CGTGTGTGTAGCAAGACTCCT 60.000 52.381 0.00 0.00 0.00 3.69
2966 3409 2.545952 CGTGTGTGTAGCAAGACTCCTT 60.546 50.000 0.00 0.00 0.00 3.36
2967 3410 3.305131 CGTGTGTGTAGCAAGACTCCTTA 60.305 47.826 0.00 0.00 0.00 2.69
2968 3411 4.238514 GTGTGTGTAGCAAGACTCCTTAG 58.761 47.826 0.00 0.00 0.00 2.18
2969 3412 4.022242 GTGTGTGTAGCAAGACTCCTTAGA 60.022 45.833 0.00 0.00 0.00 2.10
2970 3413 4.022242 TGTGTGTAGCAAGACTCCTTAGAC 60.022 45.833 0.00 0.00 0.00 2.59
2971 3414 4.022242 GTGTGTAGCAAGACTCCTTAGACA 60.022 45.833 0.00 0.00 0.00 3.41
2972 3415 4.772624 TGTGTAGCAAGACTCCTTAGACAT 59.227 41.667 0.00 0.00 0.00 3.06
2973 3416 5.105716 TGTGTAGCAAGACTCCTTAGACATC 60.106 44.000 0.00 0.00 0.00 3.06
3129 3577 1.347221 CATTACCGCCGTTTCGAGC 59.653 57.895 0.00 0.00 0.00 5.03
3139 3587 1.469940 CCGTTTCGAGCTGCTATCACT 60.470 52.381 0.15 0.00 0.00 3.41
3156 3604 5.712152 ATCACTGGAATTCACTTGTTTCC 57.288 39.130 7.93 0.00 39.50 3.13
3183 3631 4.482386 CTCGTCGTTAGATGACCAAAGAA 58.518 43.478 0.00 0.00 37.48 2.52
3198 3646 2.793278 AAGAACCAACATTTGTCGCC 57.207 45.000 0.00 0.00 0.00 5.54
3244 3692 3.482156 AGACAACAGTTGTGCATCTCT 57.518 42.857 23.94 10.18 45.52 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.543507 ATCTTGCAGTGTATAGCTTAGCT 57.456 39.130 12.67 12.67 43.41 3.32
111 114 3.819368 TCAGTGATCAAAGCTTGGAACA 58.181 40.909 7.83 8.82 0.00 3.18
166 169 9.809096 TCTTTTGCATGTACTGTTTTCAAAATA 57.191 25.926 0.00 0.00 33.37 1.40
167 170 8.715191 TCTTTTGCATGTACTGTTTTCAAAAT 57.285 26.923 0.00 0.00 33.37 1.82
170 173 6.533367 GGTTCTTTTGCATGTACTGTTTTCAA 59.467 34.615 0.00 0.00 0.00 2.69
171 174 6.039616 GGTTCTTTTGCATGTACTGTTTTCA 58.960 36.000 0.00 0.00 0.00 2.69
178 187 6.909550 TTAATGGGTTCTTTTGCATGTACT 57.090 33.333 0.00 0.00 0.00 2.73
219 422 9.674824 CAGGAAATGATTAATGTGCTCTTATTC 57.325 33.333 0.00 0.00 0.00 1.75
237 440 6.985188 TTATTTCGAGAAGACCAGGAAATG 57.015 37.500 0.00 0.00 37.73 2.32
280 488 1.095807 GCAAGCCGGATCTGGGTAAC 61.096 60.000 25.29 16.18 39.24 2.50
281 489 1.223487 GCAAGCCGGATCTGGGTAA 59.777 57.895 25.29 0.00 39.24 2.85
282 490 1.271840 AAGCAAGCCGGATCTGGGTA 61.272 55.000 25.29 0.00 39.24 3.69
283 491 2.606587 AAGCAAGCCGGATCTGGGT 61.607 57.895 19.87 19.87 42.79 4.51
284 492 2.117156 CAAGCAAGCCGGATCTGGG 61.117 63.158 22.38 10.62 0.00 4.45
285 493 2.768492 GCAAGCAAGCCGGATCTGG 61.768 63.158 16.98 16.98 0.00 3.86
286 494 1.712977 GAGCAAGCAAGCCGGATCTG 61.713 60.000 5.05 0.84 34.23 2.90
287 495 1.451028 GAGCAAGCAAGCCGGATCT 60.451 57.895 5.05 0.00 34.23 2.75
288 496 2.476320 GGAGCAAGCAAGCCGGATC 61.476 63.158 5.05 0.00 34.23 3.36
289 497 2.439156 GGAGCAAGCAAGCCGGAT 60.439 61.111 5.05 0.00 34.23 4.18
290 498 4.722700 GGGAGCAAGCAAGCCGGA 62.723 66.667 5.05 0.00 34.23 5.14
291 499 4.729918 AGGGAGCAAGCAAGCCGG 62.730 66.667 0.00 0.00 34.23 6.13
292 500 3.130160 GAGGGAGCAAGCAAGCCG 61.130 66.667 0.00 0.00 34.23 5.52
293 501 2.753446 GGAGGGAGCAAGCAAGCC 60.753 66.667 0.00 0.00 34.23 4.35
294 502 2.753446 GGGAGGGAGCAAGCAAGC 60.753 66.667 0.00 0.00 0.00 4.01
295 503 2.044551 GGGGAGGGAGCAAGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
296 504 2.240918 ATGGGGAGGGAGCAAGCAA 61.241 57.895 0.00 0.00 0.00 3.91
297 505 2.614969 ATGGGGAGGGAGCAAGCA 60.615 61.111 0.00 0.00 0.00 3.91
298 506 2.123982 CATGGGGAGGGAGCAAGC 60.124 66.667 0.00 0.00 0.00 4.01
299 507 1.348008 TAGCATGGGGAGGGAGCAAG 61.348 60.000 0.00 0.00 0.00 4.01
300 508 1.307778 TAGCATGGGGAGGGAGCAA 60.308 57.895 0.00 0.00 0.00 3.91
301 509 2.072487 GTAGCATGGGGAGGGAGCA 61.072 63.158 0.00 0.00 0.00 4.26
302 510 2.823758 GGTAGCATGGGGAGGGAGC 61.824 68.421 0.00 0.00 0.00 4.70
303 511 0.769776 ATGGTAGCATGGGGAGGGAG 60.770 60.000 6.62 0.00 0.00 4.30
304 512 0.768221 GATGGTAGCATGGGGAGGGA 60.768 60.000 13.10 0.00 0.00 4.20
305 513 1.763770 GATGGTAGCATGGGGAGGG 59.236 63.158 13.10 0.00 0.00 4.30
306 514 1.763770 GGATGGTAGCATGGGGAGG 59.236 63.158 13.10 0.00 0.00 4.30
307 515 1.372683 CGGATGGTAGCATGGGGAG 59.627 63.158 13.10 0.00 0.00 4.30
308 516 1.383943 ACGGATGGTAGCATGGGGA 60.384 57.895 13.10 0.00 0.00 4.81
309 517 1.227943 CACGGATGGTAGCATGGGG 60.228 63.158 13.10 1.06 0.00 4.96
310 518 0.107214 AACACGGATGGTAGCATGGG 60.107 55.000 13.10 2.31 0.00 4.00
311 519 1.299541 GAACACGGATGGTAGCATGG 58.700 55.000 13.10 6.58 0.00 3.66
312 520 1.299541 GGAACACGGATGGTAGCATG 58.700 55.000 13.10 1.57 0.00 4.06
313 521 0.180406 GGGAACACGGATGGTAGCAT 59.820 55.000 7.23 7.23 0.00 3.79
314 522 1.195442 TGGGAACACGGATGGTAGCA 61.195 55.000 0.00 0.00 33.40 3.49
315 523 1.600107 TGGGAACACGGATGGTAGC 59.400 57.895 0.00 0.00 33.40 3.58
683 891 3.521937 ACCTCGTTAAAATCAGGGGATGA 59.478 43.478 0.00 0.00 43.70 2.92
684 892 3.627577 CACCTCGTTAAAATCAGGGGATG 59.372 47.826 0.00 0.00 29.94 3.51
685 893 3.371595 CCACCTCGTTAAAATCAGGGGAT 60.372 47.826 0.00 0.00 29.94 3.85
686 894 2.026636 CCACCTCGTTAAAATCAGGGGA 60.027 50.000 0.00 0.00 29.94 4.81
687 895 2.365582 CCACCTCGTTAAAATCAGGGG 58.634 52.381 0.00 0.00 0.00 4.79
688 896 2.290705 ACCCACCTCGTTAAAATCAGGG 60.291 50.000 0.00 0.00 39.66 4.45
689 897 3.007635 GACCCACCTCGTTAAAATCAGG 58.992 50.000 0.00 0.00 0.00 3.86
690 898 3.007635 GGACCCACCTCGTTAAAATCAG 58.992 50.000 0.00 0.00 35.41 2.90
691 899 2.613474 CGGACCCACCTCGTTAAAATCA 60.613 50.000 0.00 0.00 36.31 2.57
692 900 2.004733 CGGACCCACCTCGTTAAAATC 58.995 52.381 0.00 0.00 36.31 2.17
693 901 1.624813 TCGGACCCACCTCGTTAAAAT 59.375 47.619 0.00 0.00 36.31 1.82
694 902 1.001181 CTCGGACCCACCTCGTTAAAA 59.999 52.381 0.00 0.00 36.31 1.52
695 903 0.604578 CTCGGACCCACCTCGTTAAA 59.395 55.000 0.00 0.00 36.31 1.52
696 904 0.540365 ACTCGGACCCACCTCGTTAA 60.540 55.000 0.00 0.00 36.31 2.01
697 905 0.962356 GACTCGGACCCACCTCGTTA 60.962 60.000 0.00 0.00 36.31 3.18
698 906 2.203596 ACTCGGACCCACCTCGTT 60.204 61.111 0.00 0.00 36.31 3.85
699 907 2.675772 GACTCGGACCCACCTCGT 60.676 66.667 0.00 0.00 36.31 4.18
700 908 0.679002 TAAGACTCGGACCCACCTCG 60.679 60.000 0.00 0.00 36.31 4.63
701 909 1.777941 ATAAGACTCGGACCCACCTC 58.222 55.000 0.00 0.00 36.31 3.85
702 910 2.249309 AATAAGACTCGGACCCACCT 57.751 50.000 0.00 0.00 36.31 4.00
703 911 3.007635 CAAAATAAGACTCGGACCCACC 58.992 50.000 0.00 0.00 0.00 4.61
704 912 3.671716 ACAAAATAAGACTCGGACCCAC 58.328 45.455 0.00 0.00 0.00 4.61
705 913 4.320870 GAACAAAATAAGACTCGGACCCA 58.679 43.478 0.00 0.00 0.00 4.51
706 914 3.688185 GGAACAAAATAAGACTCGGACCC 59.312 47.826 0.00 0.00 0.00 4.46
707 915 4.320870 TGGAACAAAATAAGACTCGGACC 58.679 43.478 0.00 0.00 31.92 4.46
723 931 2.817258 GTGGGTTGATTCGATTGGAACA 59.183 45.455 0.00 0.00 37.50 3.18
724 932 2.159572 CGTGGGTTGATTCGATTGGAAC 60.160 50.000 0.00 0.00 37.50 3.62
725 933 2.080693 CGTGGGTTGATTCGATTGGAA 58.919 47.619 0.00 0.00 39.42 3.53
726 934 1.002659 ACGTGGGTTGATTCGATTGGA 59.997 47.619 0.00 0.00 0.00 3.53
727 935 1.448985 ACGTGGGTTGATTCGATTGG 58.551 50.000 0.00 0.00 0.00 3.16
728 936 3.485216 GCTTACGTGGGTTGATTCGATTG 60.485 47.826 0.00 0.00 0.00 2.67
729 937 2.676342 GCTTACGTGGGTTGATTCGATT 59.324 45.455 0.00 0.00 0.00 3.34
730 938 2.277084 GCTTACGTGGGTTGATTCGAT 58.723 47.619 0.00 0.00 0.00 3.59
731 939 1.717194 GCTTACGTGGGTTGATTCGA 58.283 50.000 0.00 0.00 0.00 3.71
732 940 0.368907 CGCTTACGTGGGTTGATTCG 59.631 55.000 0.00 0.00 33.53 3.34
733 941 0.725117 CCGCTTACGTGGGTTGATTC 59.275 55.000 0.00 0.00 37.15 2.52
734 942 0.322322 TCCGCTTACGTGGGTTGATT 59.678 50.000 0.00 0.00 41.26 2.57
735 943 0.322322 TTCCGCTTACGTGGGTTGAT 59.678 50.000 0.00 0.00 41.26 2.57
736 944 0.320073 CTTCCGCTTACGTGGGTTGA 60.320 55.000 0.00 0.00 41.26 3.18
737 945 1.908066 GCTTCCGCTTACGTGGGTTG 61.908 60.000 0.00 0.00 41.26 3.77
738 946 1.670083 GCTTCCGCTTACGTGGGTT 60.670 57.895 0.00 0.00 41.26 4.11
739 947 2.047560 GCTTCCGCTTACGTGGGT 60.048 61.111 0.00 0.00 41.26 4.51
740 948 2.047655 TGCTTCCGCTTACGTGGG 60.048 61.111 0.00 0.00 41.26 4.61
741 949 1.225376 TTGTGCTTCCGCTTACGTGG 61.225 55.000 0.00 0.00 42.32 4.94
742 950 0.584396 TTTGTGCTTCCGCTTACGTG 59.416 50.000 0.00 0.00 37.70 4.49
743 951 1.196808 CATTTGTGCTTCCGCTTACGT 59.803 47.619 0.00 0.00 37.70 3.57
744 952 1.465689 CCATTTGTGCTTCCGCTTACG 60.466 52.381 0.00 0.00 36.97 3.18
745 953 1.135402 CCCATTTGTGCTTCCGCTTAC 60.135 52.381 0.00 0.00 36.97 2.34
746 954 1.173043 CCCATTTGTGCTTCCGCTTA 58.827 50.000 0.00 0.00 36.97 3.09
747 955 1.966762 CCCATTTGTGCTTCCGCTT 59.033 52.632 0.00 0.00 36.97 4.68
748 956 2.639327 GCCCATTTGTGCTTCCGCT 61.639 57.895 0.00 0.00 36.97 5.52
749 957 2.125952 GCCCATTTGTGCTTCCGC 60.126 61.111 0.00 0.00 0.00 5.54
750 958 2.179018 CGCCCATTTGTGCTTCCG 59.821 61.111 0.00 0.00 0.00 4.30
751 959 2.125952 GCGCCCATTTGTGCTTCC 60.126 61.111 0.00 0.00 38.69 3.46
752 960 1.734117 GTGCGCCCATTTGTGCTTC 60.734 57.895 4.18 0.00 42.20 3.86
753 961 2.339712 GTGCGCCCATTTGTGCTT 59.660 55.556 4.18 0.00 42.20 3.91
754 962 4.041917 CGTGCGCCCATTTGTGCT 62.042 61.111 4.18 0.00 42.20 4.40
756 964 3.837908 TTGCGTGCGCCCATTTGTG 62.838 57.895 14.16 0.00 41.09 3.33
757 965 3.556543 CTTGCGTGCGCCCATTTGT 62.557 57.895 14.16 0.00 41.09 2.83
758 966 2.806198 CTTGCGTGCGCCCATTTG 60.806 61.111 14.16 0.00 41.09 2.32
759 967 3.267597 GACTTGCGTGCGCCCATTT 62.268 57.895 14.16 0.00 41.09 2.32
760 968 3.737172 GACTTGCGTGCGCCCATT 61.737 61.111 14.16 0.00 41.09 3.16
761 969 4.704833 AGACTTGCGTGCGCCCAT 62.705 61.111 14.16 0.00 41.09 4.00
765 973 4.122515 GACGAGACTTGCGTGCGC 62.123 66.667 9.85 9.85 42.77 6.09
766 974 3.470567 GGACGAGACTTGCGTGCG 61.471 66.667 0.00 0.00 42.77 5.34
768 976 1.354337 CCATGGACGAGACTTGCGTG 61.354 60.000 5.56 0.00 42.77 5.34
769 977 1.079819 CCATGGACGAGACTTGCGT 60.080 57.895 5.56 0.00 45.79 5.24
770 978 0.670546 AACCATGGACGAGACTTGCG 60.671 55.000 21.47 0.00 0.00 4.85
771 979 2.000447 GTAACCATGGACGAGACTTGC 59.000 52.381 21.47 0.00 0.00 4.01
772 980 2.618053 GGTAACCATGGACGAGACTTG 58.382 52.381 21.47 0.00 0.00 3.16
826 1051 6.484288 TGGGAAATTACTCATGTGAACAGAT 58.516 36.000 0.94 0.00 0.00 2.90
828 1053 5.707298 ACTGGGAAATTACTCATGTGAACAG 59.293 40.000 0.94 0.00 0.00 3.16
833 1058 5.634859 GCAAAACTGGGAAATTACTCATGTG 59.365 40.000 0.00 0.00 0.00 3.21
849 1074 3.498397 ACTAACTGATCACGGCAAAACTG 59.502 43.478 0.00 0.00 0.00 3.16
882 1107 6.356452 GCGTCAGTTATCATACGTTACTAGTG 59.644 42.308 5.39 0.00 37.64 2.74
977 1203 2.668457 GCGTAGTGTGTGGAGAATTCAG 59.332 50.000 8.44 0.00 0.00 3.02
992 1218 2.698855 AAGGATGCTCATTGCGTAGT 57.301 45.000 0.00 0.00 46.63 2.73
1002 1228 3.145286 GGCAAGGAGATAAAGGATGCTC 58.855 50.000 0.00 0.00 33.09 4.26
1051 1283 4.713824 TGTATGTATATCGGGTAGCAGC 57.286 45.455 0.00 0.00 0.00 5.25
1113 1345 1.369091 AGGCAACAATCGATGGCGAC 61.369 55.000 0.00 0.00 45.91 5.19
1129 1403 3.097614 TCAAAGGGAGTGAGTAGTAGGC 58.902 50.000 0.00 0.00 0.00 3.93
1133 1407 2.557490 GTCGTCAAAGGGAGTGAGTAGT 59.443 50.000 0.00 0.00 0.00 2.73
1134 1408 2.414293 CGTCGTCAAAGGGAGTGAGTAG 60.414 54.545 0.00 0.00 0.00 2.57
1135 1409 1.538512 CGTCGTCAAAGGGAGTGAGTA 59.461 52.381 0.00 0.00 0.00 2.59
1136 1410 0.314302 CGTCGTCAAAGGGAGTGAGT 59.686 55.000 0.00 0.00 0.00 3.41
1137 1411 0.388649 CCGTCGTCAAAGGGAGTGAG 60.389 60.000 0.00 0.00 0.00 3.51
1138 1412 1.663739 CCGTCGTCAAAGGGAGTGA 59.336 57.895 0.00 0.00 0.00 3.41
1139 1413 2.027625 GCCGTCGTCAAAGGGAGTG 61.028 63.158 0.00 0.00 0.00 3.51
1140 1414 2.342648 GCCGTCGTCAAAGGGAGT 59.657 61.111 0.00 0.00 0.00 3.85
1141 1415 2.809601 CGCCGTCGTCAAAGGGAG 60.810 66.667 0.00 0.00 0.00 4.30
1909 2207 2.344872 GACCCAGTAAACGGCCGT 59.655 61.111 28.70 28.70 0.00 5.68
1910 2208 2.812178 CGACCCAGTAAACGGCCG 60.812 66.667 26.86 26.86 0.00 6.13
1911 2209 2.030958 CACGACCCAGTAAACGGCC 61.031 63.158 0.00 0.00 0.00 6.13
2171 2469 1.025812 GTCCTCGTCCTGATCATCGT 58.974 55.000 0.00 0.00 0.00 3.73
2255 2553 1.849829 GTTTGCTTCAAACGGTTTCGG 59.150 47.619 2.51 0.00 42.97 4.30
2376 2708 4.661461 GCCACTTTGCTTTCTGGC 57.339 55.556 0.00 0.00 42.41 4.85
2424 2756 3.185188 CCTAGTCGATGTAACATGCATGC 59.815 47.826 26.53 11.82 0.00 4.06
2442 2778 4.323417 TGTAAACACAACTCATGGCCTAG 58.677 43.478 3.32 1.00 0.00 3.02
2551 2961 8.293867 TGGTACTACATTAATGTGCAAGTTTTC 58.706 33.333 27.62 16.20 41.89 2.29
2760 3203 8.757982 ATAATAGATACATCATGGGGAAATGC 57.242 34.615 0.00 0.00 0.00 3.56
2822 3265 1.230635 ACTTGTGTCGTGCATGGAGC 61.231 55.000 5.98 0.00 45.96 4.70
2823 3266 0.514255 CACTTGTGTCGTGCATGGAG 59.486 55.000 5.98 0.03 0.00 3.86
2824 3267 0.105778 TCACTTGTGTCGTGCATGGA 59.894 50.000 5.98 0.00 32.54 3.41
2825 3268 0.235665 GTCACTTGTGTCGTGCATGG 59.764 55.000 5.98 0.00 32.54 3.66
2826 3269 0.235665 GGTCACTTGTGTCGTGCATG 59.764 55.000 0.00 0.00 32.54 4.06
2827 3270 1.221466 CGGTCACTTGTGTCGTGCAT 61.221 55.000 0.00 0.00 32.54 3.96
2828 3271 1.880796 CGGTCACTTGTGTCGTGCA 60.881 57.895 0.46 0.00 32.54 4.57
2829 3272 0.944311 ATCGGTCACTTGTGTCGTGC 60.944 55.000 14.35 0.00 32.54 5.34
2830 3273 1.060713 GATCGGTCACTTGTGTCGTG 58.939 55.000 14.35 0.00 0.00 4.35
2831 3274 0.959553 AGATCGGTCACTTGTGTCGT 59.040 50.000 0.00 6.61 0.00 4.34
2832 3275 2.913777 TAGATCGGTCACTTGTGTCG 57.086 50.000 0.00 6.76 0.00 4.35
2833 3276 2.860735 GCATAGATCGGTCACTTGTGTC 59.139 50.000 0.00 0.00 0.00 3.67
2834 3277 2.233676 TGCATAGATCGGTCACTTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
2835 3278 2.604914 GTGCATAGATCGGTCACTTGTG 59.395 50.000 0.00 0.00 0.00 3.33
2836 3279 2.735444 CGTGCATAGATCGGTCACTTGT 60.735 50.000 0.00 0.00 0.00 3.16
2837 3280 1.854743 CGTGCATAGATCGGTCACTTG 59.145 52.381 0.00 0.00 0.00 3.16
2838 3281 1.749063 TCGTGCATAGATCGGTCACTT 59.251 47.619 0.00 0.00 0.00 3.16
2839 3282 1.065701 GTCGTGCATAGATCGGTCACT 59.934 52.381 0.00 0.00 0.00 3.41
2840 3283 1.202256 TGTCGTGCATAGATCGGTCAC 60.202 52.381 0.00 0.00 0.00 3.67
2841 3284 1.099689 TGTCGTGCATAGATCGGTCA 58.900 50.000 0.00 0.00 0.00 4.02
2842 3285 1.478137 GTGTCGTGCATAGATCGGTC 58.522 55.000 0.00 0.00 0.00 4.79
2843 3286 0.248498 CGTGTCGTGCATAGATCGGT 60.248 55.000 0.00 0.00 0.00 4.69
2844 3287 0.248498 ACGTGTCGTGCATAGATCGG 60.248 55.000 18.14 7.28 39.18 4.18
2845 3288 2.378507 TACGTGTCGTGCATAGATCG 57.621 50.000 0.00 15.02 41.39 3.69
2846 3289 4.148348 GGATTTACGTGTCGTGCATAGATC 59.852 45.833 0.00 0.00 41.39 2.75
2847 3290 4.049186 GGATTTACGTGTCGTGCATAGAT 58.951 43.478 0.00 0.00 41.39 1.98
2848 3291 3.119424 TGGATTTACGTGTCGTGCATAGA 60.119 43.478 0.00 0.00 41.39 1.98
2849 3292 3.183754 TGGATTTACGTGTCGTGCATAG 58.816 45.455 0.00 0.00 41.39 2.23
2850 3293 3.183754 CTGGATTTACGTGTCGTGCATA 58.816 45.455 0.00 0.00 41.39 3.14
2851 3294 1.999735 CTGGATTTACGTGTCGTGCAT 59.000 47.619 0.00 0.00 41.39 3.96
2852 3295 1.424403 CTGGATTTACGTGTCGTGCA 58.576 50.000 0.00 0.00 41.39 4.57
2853 3296 0.094730 GCTGGATTTACGTGTCGTGC 59.905 55.000 0.00 0.00 41.39 5.34
2854 3297 0.365523 CGCTGGATTTACGTGTCGTG 59.634 55.000 0.00 0.00 41.39 4.35
2855 3298 0.734942 CCGCTGGATTTACGTGTCGT 60.735 55.000 0.00 0.00 44.35 4.34
2856 3299 1.995991 CCGCTGGATTTACGTGTCG 59.004 57.895 0.00 0.00 0.00 4.35
2857 3300 1.702491 GGCCGCTGGATTTACGTGTC 61.702 60.000 0.00 0.00 0.00 3.67
2858 3301 1.743995 GGCCGCTGGATTTACGTGT 60.744 57.895 0.00 0.00 0.00 4.49
2859 3302 2.808958 CGGCCGCTGGATTTACGTG 61.809 63.158 14.67 0.00 0.00 4.49
2860 3303 2.510691 CGGCCGCTGGATTTACGT 60.511 61.111 14.67 0.00 0.00 3.57
2861 3304 2.202824 TCGGCCGCTGGATTTACG 60.203 61.111 23.51 0.00 0.00 3.18
2862 3305 2.522638 CGTCGGCCGCTGGATTTAC 61.523 63.158 23.51 10.03 0.00 2.01
2863 3306 2.202824 CGTCGGCCGCTGGATTTA 60.203 61.111 23.51 0.00 0.00 1.40
2874 3317 2.125106 ATTGAGAAGGGCGTCGGC 60.125 61.111 10.88 10.88 38.90 5.54
2875 3318 0.391130 TTGATTGAGAAGGGCGTCGG 60.391 55.000 0.00 0.00 0.00 4.79
2876 3319 0.721718 GTTGATTGAGAAGGGCGTCG 59.278 55.000 0.00 0.00 0.00 5.12
2877 3320 0.721718 CGTTGATTGAGAAGGGCGTC 59.278 55.000 0.00 0.00 0.00 5.19
2878 3321 0.034896 ACGTTGATTGAGAAGGGCGT 59.965 50.000 0.00 0.00 0.00 5.68
2879 3322 1.156736 AACGTTGATTGAGAAGGGCG 58.843 50.000 0.00 0.00 0.00 6.13
2880 3323 2.293399 ACAAACGTTGATTGAGAAGGGC 59.707 45.455 0.00 0.00 0.00 5.19
2881 3324 3.058224 GGACAAACGTTGATTGAGAAGGG 60.058 47.826 0.00 0.00 0.00 3.95
2882 3325 3.363970 CGGACAAACGTTGATTGAGAAGG 60.364 47.826 0.00 0.00 0.00 3.46
2883 3326 3.363970 CCGGACAAACGTTGATTGAGAAG 60.364 47.826 0.00 0.00 0.00 2.85
2884 3327 2.546368 CCGGACAAACGTTGATTGAGAA 59.454 45.455 0.00 0.00 0.00 2.87
2885 3328 2.139917 CCGGACAAACGTTGATTGAGA 58.860 47.619 0.00 0.00 0.00 3.27
2886 3329 1.399727 GCCGGACAAACGTTGATTGAG 60.400 52.381 5.05 0.00 0.00 3.02
2887 3330 0.589223 GCCGGACAAACGTTGATTGA 59.411 50.000 5.05 0.00 0.00 2.57
2888 3331 0.386731 GGCCGGACAAACGTTGATTG 60.387 55.000 5.05 0.00 0.00 2.67
2889 3332 0.820074 TGGCCGGACAAACGTTGATT 60.820 50.000 8.12 0.00 0.00 2.57
2890 3333 1.228003 TGGCCGGACAAACGTTGAT 60.228 52.632 8.12 0.00 0.00 2.57
2891 3334 1.890041 CTGGCCGGACAAACGTTGA 60.890 57.895 13.37 0.00 0.00 3.18
2892 3335 1.234615 ATCTGGCCGGACAAACGTTG 61.235 55.000 18.90 0.00 0.00 4.10
2893 3336 0.536460 AATCTGGCCGGACAAACGTT 60.536 50.000 18.90 2.72 0.00 3.99
2894 3337 0.536460 AAATCTGGCCGGACAAACGT 60.536 50.000 18.90 0.00 0.00 3.99
2895 3338 1.444836 TAAATCTGGCCGGACAAACG 58.555 50.000 18.90 0.00 0.00 3.60
2896 3339 3.181490 GGATTAAATCTGGCCGGACAAAC 60.181 47.826 18.90 9.96 0.00 2.93
2897 3340 3.020984 GGATTAAATCTGGCCGGACAAA 58.979 45.455 18.90 11.90 0.00 2.83
2898 3341 2.025793 TGGATTAAATCTGGCCGGACAA 60.026 45.455 18.90 11.92 0.00 3.18
2899 3342 1.562008 TGGATTAAATCTGGCCGGACA 59.438 47.619 18.90 11.16 0.00 4.02
2900 3343 2.341846 TGGATTAAATCTGGCCGGAC 57.658 50.000 18.90 0.56 0.00 4.79
2901 3344 2.549992 CGATGGATTAAATCTGGCCGGA 60.550 50.000 18.80 18.80 0.00 5.14
2902 3345 1.806542 CGATGGATTAAATCTGGCCGG 59.193 52.381 4.71 4.71 0.00 6.13
2903 3346 2.480419 GACGATGGATTAAATCTGGCCG 59.520 50.000 0.00 0.00 0.00 6.13
2904 3347 3.499918 CAGACGATGGATTAAATCTGGCC 59.500 47.826 0.00 0.00 31.85 5.36
2905 3348 4.024556 CACAGACGATGGATTAAATCTGGC 60.025 45.833 0.00 0.00 38.29 4.85
2906 3349 4.024556 GCACAGACGATGGATTAAATCTGG 60.025 45.833 0.00 0.00 38.29 3.86
2907 3350 4.571984 TGCACAGACGATGGATTAAATCTG 59.428 41.667 0.00 0.00 39.56 2.90
2908 3351 4.769688 TGCACAGACGATGGATTAAATCT 58.230 39.130 0.00 0.00 0.00 2.40
2909 3352 5.613360 CGATGCACAGACGATGGATTAAATC 60.613 44.000 0.00 0.00 0.00 2.17
2910 3353 4.212004 CGATGCACAGACGATGGATTAAAT 59.788 41.667 0.00 0.00 0.00 1.40
2911 3354 3.555547 CGATGCACAGACGATGGATTAAA 59.444 43.478 0.00 0.00 0.00 1.52
2912 3355 3.123050 CGATGCACAGACGATGGATTAA 58.877 45.455 0.00 0.00 0.00 1.40
2913 3356 2.100749 ACGATGCACAGACGATGGATTA 59.899 45.455 10.44 0.00 0.00 1.75
2914 3357 1.134699 ACGATGCACAGACGATGGATT 60.135 47.619 10.44 0.00 0.00 3.01
2915 3358 0.461548 ACGATGCACAGACGATGGAT 59.538 50.000 10.44 0.00 0.00 3.41
2916 3359 0.179137 GACGATGCACAGACGATGGA 60.179 55.000 10.44 0.00 0.00 3.41
2917 3360 1.148157 GGACGATGCACAGACGATGG 61.148 60.000 10.44 0.00 0.00 3.51
2918 3361 0.458370 TGGACGATGCACAGACGATG 60.458 55.000 10.44 0.00 0.00 3.84
2919 3362 0.246360 TTGGACGATGCACAGACGAT 59.754 50.000 10.44 0.00 0.00 3.73
2920 3363 0.666274 GTTGGACGATGCACAGACGA 60.666 55.000 10.44 0.00 0.00 4.20
2921 3364 0.667487 AGTTGGACGATGCACAGACG 60.667 55.000 0.00 0.00 0.00 4.18
2922 3365 0.792640 CAGTTGGACGATGCACAGAC 59.207 55.000 0.00 0.00 0.00 3.51
2923 3366 0.950555 GCAGTTGGACGATGCACAGA 60.951 55.000 0.00 0.00 39.75 3.41
2924 3367 1.229975 TGCAGTTGGACGATGCACAG 61.230 55.000 0.00 0.00 44.56 3.66
2925 3368 1.227793 TGCAGTTGGACGATGCACA 60.228 52.632 0.00 0.00 44.56 4.57
2926 3369 3.654201 TGCAGTTGGACGATGCAC 58.346 55.556 0.00 0.00 44.56 4.57
2928 3371 1.349627 CGATGCAGTTGGACGATGC 59.650 57.895 0.00 0.00 40.40 3.91
2929 3372 0.371301 CACGATGCAGTTGGACGATG 59.629 55.000 0.00 0.00 0.00 3.84
2930 3373 0.037326 ACACGATGCAGTTGGACGAT 60.037 50.000 0.00 0.00 0.00 3.73
2931 3374 0.943835 CACACGATGCAGTTGGACGA 60.944 55.000 0.00 0.00 0.00 4.20
2932 3375 1.221466 ACACACGATGCAGTTGGACG 61.221 55.000 0.00 0.00 0.00 4.79
2933 3376 0.235665 CACACACGATGCAGTTGGAC 59.764 55.000 0.00 0.00 0.00 4.02
2934 3377 0.179059 ACACACACGATGCAGTTGGA 60.179 50.000 0.00 0.00 0.00 3.53
2935 3378 1.460743 CTACACACACGATGCAGTTGG 59.539 52.381 0.00 0.00 0.00 3.77
2936 3379 1.136252 GCTACACACACGATGCAGTTG 60.136 52.381 0.00 0.00 0.00 3.16
2937 3380 1.148310 GCTACACACACGATGCAGTT 58.852 50.000 0.00 0.00 0.00 3.16
2938 3381 0.033366 TGCTACACACACGATGCAGT 59.967 50.000 0.00 0.00 0.00 4.40
2939 3382 1.127397 CTTGCTACACACACGATGCAG 59.873 52.381 0.00 0.00 0.00 4.41
2940 3383 1.147473 CTTGCTACACACACGATGCA 58.853 50.000 0.00 0.00 0.00 3.96
2941 3384 1.126846 GTCTTGCTACACACACGATGC 59.873 52.381 0.00 0.00 0.00 3.91
2942 3385 2.663602 GAGTCTTGCTACACACACGATG 59.336 50.000 0.00 0.00 0.00 3.84
2943 3386 2.352814 GGAGTCTTGCTACACACACGAT 60.353 50.000 0.00 0.00 0.00 3.73
2944 3387 1.000607 GGAGTCTTGCTACACACACGA 60.001 52.381 0.00 0.00 0.00 4.35
2945 3388 1.000163 AGGAGTCTTGCTACACACACG 60.000 52.381 0.00 0.00 0.00 4.49
2946 3389 2.821991 AGGAGTCTTGCTACACACAC 57.178 50.000 0.00 0.00 0.00 3.82
2947 3390 4.022242 GTCTAAGGAGTCTTGCTACACACA 60.022 45.833 0.00 0.00 34.59 3.72
2948 3391 4.022242 TGTCTAAGGAGTCTTGCTACACAC 60.022 45.833 0.00 0.00 34.59 3.82
2949 3392 4.149598 TGTCTAAGGAGTCTTGCTACACA 58.850 43.478 0.00 0.00 34.59 3.72
2950 3393 4.785511 TGTCTAAGGAGTCTTGCTACAC 57.214 45.455 0.00 0.00 34.59 2.90
2951 3394 5.016831 TGATGTCTAAGGAGTCTTGCTACA 58.983 41.667 0.00 0.00 34.59 2.74
2952 3395 5.126384 ACTGATGTCTAAGGAGTCTTGCTAC 59.874 44.000 0.00 0.00 34.59 3.58
2953 3396 5.265191 ACTGATGTCTAAGGAGTCTTGCTA 58.735 41.667 0.00 0.00 34.59 3.49
2954 3397 4.093011 ACTGATGTCTAAGGAGTCTTGCT 58.907 43.478 0.00 0.00 34.59 3.91
2955 3398 4.464069 ACTGATGTCTAAGGAGTCTTGC 57.536 45.455 0.00 0.00 34.59 4.01
2956 3399 6.767524 ACTACTGATGTCTAAGGAGTCTTG 57.232 41.667 0.00 0.00 31.65 3.02
2957 3400 7.337436 GTGTACTACTGATGTCTAAGGAGTCTT 59.663 40.741 0.00 0.00 38.56 3.01
2958 3401 6.824704 GTGTACTACTGATGTCTAAGGAGTCT 59.175 42.308 0.00 0.00 38.56 3.24
2959 3402 6.824704 AGTGTACTACTGATGTCTAAGGAGTC 59.175 42.308 0.00 0.00 38.56 3.36
2960 3403 6.723339 AGTGTACTACTGATGTCTAAGGAGT 58.277 40.000 0.00 0.00 40.74 3.85
2961 3404 7.476667 CAAGTGTACTACTGATGTCTAAGGAG 58.523 42.308 0.00 0.00 40.26 3.69
2962 3405 6.127703 GCAAGTGTACTACTGATGTCTAAGGA 60.128 42.308 0.00 0.00 40.26 3.36
2963 3406 6.037098 GCAAGTGTACTACTGATGTCTAAGG 58.963 44.000 0.00 0.00 40.26 2.69
2964 3407 6.621613 TGCAAGTGTACTACTGATGTCTAAG 58.378 40.000 0.00 0.00 40.26 2.18
2965 3408 6.584185 TGCAAGTGTACTACTGATGTCTAA 57.416 37.500 0.00 0.00 40.26 2.10
2966 3409 6.775594 ATGCAAGTGTACTACTGATGTCTA 57.224 37.500 0.00 0.00 40.26 2.59
2967 3410 5.667539 ATGCAAGTGTACTACTGATGTCT 57.332 39.130 0.00 0.00 40.26 3.41
2968 3411 8.331022 CAAATATGCAAGTGTACTACTGATGTC 58.669 37.037 0.00 0.00 40.26 3.06
2969 3412 8.201554 CAAATATGCAAGTGTACTACTGATGT 57.798 34.615 0.00 0.00 40.26 3.06
3129 3577 4.940046 ACAAGTGAATTCCAGTGATAGCAG 59.060 41.667 2.27 0.00 0.00 4.24
3139 3587 3.006752 GCATGGGAAACAAGTGAATTCCA 59.993 43.478 16.73 6.72 43.56 3.53
3156 3604 2.120232 GTCATCTAACGACGAGCATGG 58.880 52.381 0.00 0.00 0.00 3.66
3183 3631 0.467290 ACAGGGCGACAAATGTTGGT 60.467 50.000 0.00 0.00 34.12 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.