Multiple sequence alignment - TraesCS1B01G412500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G412500 chr1B 100.000 3591 0 0 1 3591 638681884 638685474 0.000000e+00 6632
1 TraesCS1B01G412500 chr1B 94.973 736 25 3 1 725 159964849 159965583 0.000000e+00 1144
2 TraesCS1B01G412500 chr1B 94.816 733 23 6 1 730 34317986 34317266 0.000000e+00 1129
3 TraesCS1B01G412500 chr1B 81.139 843 135 17 1749 2576 600916016 600916849 0.000000e+00 654
4 TraesCS1B01G412500 chr1B 82.810 669 94 10 1000 1664 600915302 600915953 2.400000e-161 579
5 TraesCS1B01G412500 chr1B 90.909 209 7 4 1 209 602225348 602225152 1.640000e-68 270
6 TraesCS1B01G412500 chr1A 92.922 1865 104 15 1737 3591 555130250 555132096 0.000000e+00 2687
7 TraesCS1B01G412500 chr1A 90.409 709 55 7 960 1661 555129238 555129940 0.000000e+00 920
8 TraesCS1B01G412500 chr3B 94.766 726 27 4 1 726 170344504 170343790 0.000000e+00 1120
9 TraesCS1B01G412500 chr2B 94.490 726 27 4 1 725 20160098 20160811 0.000000e+00 1107
10 TraesCS1B01G412500 chr2B 82.903 310 53 0 999 1308 651962726 651962417 2.730000e-71 279
11 TraesCS1B01G412500 chrUn 93.931 725 20 9 1 725 213347202 213347902 0.000000e+00 1074
12 TraesCS1B01G412500 chrUn 93.655 725 22 7 2 725 245285209 245285910 0.000000e+00 1062
13 TraesCS1B01G412500 chrUn 93.655 725 22 7 2 725 324375764 324376465 0.000000e+00 1062
14 TraesCS1B01G412500 chrUn 95.310 661 18 4 65 725 241061798 241062445 0.000000e+00 1037
15 TraesCS1B01G412500 chrUn 95.310 661 18 4 65 725 340597534 340598181 0.000000e+00 1037
16 TraesCS1B01G412500 chr7A 88.243 740 44 21 1 725 13372982 13373693 0.000000e+00 845
17 TraesCS1B01G412500 chr7A 91.641 323 16 5 418 730 65167147 65166826 1.530000e-118 436
18 TraesCS1B01G412500 chr7A 87.097 310 28 6 3101 3401 579208510 579208816 1.230000e-89 340
19 TraesCS1B01G412500 chr7A 95.455 132 5 1 3458 3589 579208822 579208952 3.630000e-50 209
20 TraesCS1B01G412500 chr7A 77.681 345 69 5 3101 3439 569123632 569123974 1.690000e-48 204
21 TraesCS1B01G412500 chr1D 80.286 908 148 22 1706 2585 436106941 436106037 0.000000e+00 656
22 TraesCS1B01G412500 chr1D 83.308 659 92 14 999 1645 436107714 436107062 3.090000e-165 592
23 TraesCS1B01G412500 chr5B 89.918 486 16 11 1 484 496803594 496804048 2.390000e-166 595
24 TraesCS1B01G412500 chr5B 84.476 496 47 15 3098 3589 489380023 489380492 2.530000e-126 462
25 TraesCS1B01G412500 chr4A 88.163 490 29 13 1 483 643585405 643584938 1.130000e-154 556
26 TraesCS1B01G412500 chr6B 86.616 523 35 23 1 513 108338705 108339202 2.440000e-151 545
27 TraesCS1B01G412500 chr6B 93.038 316 17 5 418 730 184836225 184835912 1.180000e-124 457
28 TraesCS1B01G412500 chr7D 86.166 506 49 10 3101 3589 508790107 508790608 8.830000e-146 527
29 TraesCS1B01G412500 chr5D 85.540 491 49 15 3103 3589 468161132 468161604 8.960000e-136 494
30 TraesCS1B01G412500 chr5D 81.874 491 55 19 3103 3591 408026578 408027036 2.020000e-102 383
31 TraesCS1B01G412500 chr2A 92.652 313 13 4 420 725 707048900 707049209 3.290000e-120 442
32 TraesCS1B01G412500 chr2A 92.063 315 14 5 425 730 699102977 699102665 1.980000e-117 433
33 TraesCS1B01G412500 chr2A 85.098 255 36 2 999 1252 688214564 688214817 3.560000e-65 259
34 TraesCS1B01G412500 chr2A 82.745 255 34 7 999 1252 688225303 688225548 6.040000e-53 219
35 TraesCS1B01G412500 chr2A 74.330 448 103 10 1753 2197 742750860 742751298 2.850000e-41 180
36 TraesCS1B01G412500 chr2A 81.522 184 34 0 1018 1201 694902078 694902261 6.210000e-33 152
37 TraesCS1B01G412500 chr3A 90.173 346 14 8 387 725 580066745 580067077 1.980000e-117 433
38 TraesCS1B01G412500 chr7B 85.303 347 30 7 3247 3589 536779919 536780248 4.440000e-89 339
39 TraesCS1B01G412500 chr7B 90.351 114 6 2 1 110 687972300 687972412 1.040000e-30 145
40 TraesCS1B01G412500 chr2D 85.209 311 44 2 999 1308 545047905 545047596 5.790000e-83 318
41 TraesCS1B01G412500 chr2D 80.899 267 39 8 1045 1309 609868831 609869087 2.190000e-47 200
42 TraesCS1B01G412500 chr5A 80.941 425 42 21 3101 3516 513927038 513927432 2.100000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G412500 chr1B 638681884 638685474 3590 False 6632.0 6632 100.0000 1 3591 1 chr1B.!!$F2 3590
1 TraesCS1B01G412500 chr1B 159964849 159965583 734 False 1144.0 1144 94.9730 1 725 1 chr1B.!!$F1 724
2 TraesCS1B01G412500 chr1B 34317266 34317986 720 True 1129.0 1129 94.8160 1 730 1 chr1B.!!$R1 729
3 TraesCS1B01G412500 chr1B 600915302 600916849 1547 False 616.5 654 81.9745 1000 2576 2 chr1B.!!$F3 1576
4 TraesCS1B01G412500 chr1A 555129238 555132096 2858 False 1803.5 2687 91.6655 960 3591 2 chr1A.!!$F1 2631
5 TraesCS1B01G412500 chr3B 170343790 170344504 714 True 1120.0 1120 94.7660 1 726 1 chr3B.!!$R1 725
6 TraesCS1B01G412500 chr2B 20160098 20160811 713 False 1107.0 1107 94.4900 1 725 1 chr2B.!!$F1 724
7 TraesCS1B01G412500 chrUn 213347202 213347902 700 False 1074.0 1074 93.9310 1 725 1 chrUn.!!$F1 724
8 TraesCS1B01G412500 chrUn 245285209 245285910 701 False 1062.0 1062 93.6550 2 725 1 chrUn.!!$F3 723
9 TraesCS1B01G412500 chrUn 324375764 324376465 701 False 1062.0 1062 93.6550 2 725 1 chrUn.!!$F4 723
10 TraesCS1B01G412500 chrUn 241061798 241062445 647 False 1037.0 1037 95.3100 65 725 1 chrUn.!!$F2 660
11 TraesCS1B01G412500 chrUn 340597534 340598181 647 False 1037.0 1037 95.3100 65 725 1 chrUn.!!$F5 660
12 TraesCS1B01G412500 chr7A 13372982 13373693 711 False 845.0 845 88.2430 1 725 1 chr7A.!!$F1 724
13 TraesCS1B01G412500 chr1D 436106037 436107714 1677 True 624.0 656 81.7970 999 2585 2 chr1D.!!$R1 1586
14 TraesCS1B01G412500 chr7D 508790107 508790608 501 False 527.0 527 86.1660 3101 3589 1 chr7D.!!$F1 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 880 0.323957 AAGTACGGGGAAGCTCAACC 59.676 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2614 3036 0.38852 CTGGAGTTGACGTCATCGCA 60.389 55.0 25.12 16.53 41.18 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 137 7.331089 AGGGTTTAGATTTCAGAGTTTAGGT 57.669 36.000 0.00 0.00 0.00 3.08
538 565 8.614469 TCAAACTTTTGAATTTTGGTCAAACT 57.386 26.923 1.81 0.00 42.98 2.66
539 566 9.712305 TCAAACTTTTGAATTTTGGTCAAACTA 57.288 25.926 1.81 0.00 42.98 2.24
560 620 2.096248 TGGTCAAACTGTGGTCAAACC 58.904 47.619 0.00 0.00 39.22 3.27
590 650 9.959749 GTCAAACTATGGTCAAACTTATTCAAA 57.040 29.630 0.00 0.00 0.00 2.69
676 745 6.106673 GTGACCTAATGCTCAAGCTAAACTA 58.893 40.000 3.32 0.00 42.66 2.24
726 795 6.907206 ACATTTGTCAGGAAAACAACAATG 57.093 33.333 0.00 0.00 36.41 2.82
727 796 6.638610 ACATTTGTCAGGAAAACAACAATGA 58.361 32.000 7.35 0.00 36.41 2.57
728 797 6.757947 ACATTTGTCAGGAAAACAACAATGAG 59.242 34.615 7.35 0.00 36.41 2.90
730 799 6.713762 TTGTCAGGAAAACAACAATGAGAT 57.286 33.333 0.00 0.00 31.90 2.75
732 801 7.202016 TGTCAGGAAAACAACAATGAGATAC 57.798 36.000 0.00 0.00 0.00 2.24
733 802 6.073276 TGTCAGGAAAACAACAATGAGATACG 60.073 38.462 0.00 0.00 0.00 3.06
734 803 5.088739 CAGGAAAACAACAATGAGATACGC 58.911 41.667 0.00 0.00 0.00 4.42
735 804 4.156008 AGGAAAACAACAATGAGATACGCC 59.844 41.667 0.00 0.00 0.00 5.68
736 805 4.156008 GGAAAACAACAATGAGATACGCCT 59.844 41.667 0.00 0.00 0.00 5.52
737 806 5.353123 GGAAAACAACAATGAGATACGCCTA 59.647 40.000 0.00 0.00 0.00 3.93
738 807 5.796350 AAACAACAATGAGATACGCCTAC 57.204 39.130 0.00 0.00 0.00 3.18
739 808 3.793559 ACAACAATGAGATACGCCTACC 58.206 45.455 0.00 0.00 0.00 3.18
740 809 3.451178 ACAACAATGAGATACGCCTACCT 59.549 43.478 0.00 0.00 0.00 3.08
741 810 4.051922 CAACAATGAGATACGCCTACCTC 58.948 47.826 0.00 0.00 0.00 3.85
742 811 3.567397 ACAATGAGATACGCCTACCTCT 58.433 45.455 0.00 0.00 0.00 3.69
743 812 3.319405 ACAATGAGATACGCCTACCTCTG 59.681 47.826 0.00 0.00 0.00 3.35
744 813 1.319541 TGAGATACGCCTACCTCTGC 58.680 55.000 0.00 0.00 0.00 4.26
745 814 1.319541 GAGATACGCCTACCTCTGCA 58.680 55.000 0.00 0.00 0.00 4.41
746 815 1.889829 GAGATACGCCTACCTCTGCAT 59.110 52.381 0.00 0.00 0.00 3.96
747 816 1.615883 AGATACGCCTACCTCTGCATG 59.384 52.381 0.00 0.00 0.00 4.06
748 817 1.613925 GATACGCCTACCTCTGCATGA 59.386 52.381 0.00 0.00 0.00 3.07
749 818 1.480789 TACGCCTACCTCTGCATGAA 58.519 50.000 0.00 0.00 0.00 2.57
750 819 0.613260 ACGCCTACCTCTGCATGAAA 59.387 50.000 0.00 0.00 0.00 2.69
751 820 1.210478 ACGCCTACCTCTGCATGAAAT 59.790 47.619 0.00 0.00 0.00 2.17
787 856 9.710818 ACCTTAACTATAGTTCTAATCCTGTCA 57.289 33.333 21.25 0.00 39.31 3.58
788 857 9.968870 CCTTAACTATAGTTCTAATCCTGTCAC 57.031 37.037 21.25 0.00 39.31 3.67
792 861 8.824756 ACTATAGTTCTAATCCTGTCACTTCA 57.175 34.615 0.00 0.00 0.00 3.02
793 862 9.256228 ACTATAGTTCTAATCCTGTCACTTCAA 57.744 33.333 0.00 0.00 0.00 2.69
794 863 9.743057 CTATAGTTCTAATCCTGTCACTTCAAG 57.257 37.037 0.00 0.00 0.00 3.02
795 864 6.426646 AGTTCTAATCCTGTCACTTCAAGT 57.573 37.500 0.00 0.00 0.00 3.16
796 865 7.540474 AGTTCTAATCCTGTCACTTCAAGTA 57.460 36.000 0.00 0.00 0.00 2.24
797 866 7.379750 AGTTCTAATCCTGTCACTTCAAGTAC 58.620 38.462 0.00 0.00 0.00 2.73
798 867 5.950883 TCTAATCCTGTCACTTCAAGTACG 58.049 41.667 0.00 0.00 0.00 3.67
799 868 3.594603 ATCCTGTCACTTCAAGTACGG 57.405 47.619 0.00 0.00 0.00 4.02
800 869 1.616865 TCCTGTCACTTCAAGTACGGG 59.383 52.381 14.42 14.42 39.35 5.28
801 870 1.337823 CCTGTCACTTCAAGTACGGGG 60.338 57.143 13.40 2.24 35.17 5.73
802 871 1.616865 CTGTCACTTCAAGTACGGGGA 59.383 52.381 0.00 0.00 0.00 4.81
803 872 2.036733 CTGTCACTTCAAGTACGGGGAA 59.963 50.000 0.00 0.00 0.00 3.97
804 873 2.036733 TGTCACTTCAAGTACGGGGAAG 59.963 50.000 17.19 17.19 42.79 3.46
805 874 1.001633 TCACTTCAAGTACGGGGAAGC 59.998 52.381 18.15 0.00 41.26 3.86
806 875 1.002087 CACTTCAAGTACGGGGAAGCT 59.998 52.381 18.15 8.01 41.26 3.74
807 876 1.275573 ACTTCAAGTACGGGGAAGCTC 59.724 52.381 18.15 0.00 41.26 4.09
808 877 1.275291 CTTCAAGTACGGGGAAGCTCA 59.725 52.381 10.01 0.00 32.54 4.26
809 878 1.344065 TCAAGTACGGGGAAGCTCAA 58.656 50.000 0.00 0.00 0.00 3.02
810 879 1.001633 TCAAGTACGGGGAAGCTCAAC 59.998 52.381 0.00 0.00 0.00 3.18
811 880 0.323957 AAGTACGGGGAAGCTCAACC 59.676 55.000 0.00 0.00 0.00 3.77
812 881 0.834687 AGTACGGGGAAGCTCAACCA 60.835 55.000 6.83 0.00 0.00 3.67
813 882 0.672711 GTACGGGGAAGCTCAACCAC 60.673 60.000 6.83 2.53 0.00 4.16
814 883 0.834687 TACGGGGAAGCTCAACCACT 60.835 55.000 5.50 0.00 0.00 4.00
815 884 1.073199 CGGGGAAGCTCAACCACTT 59.927 57.895 5.50 0.00 0.00 3.16
816 885 0.955919 CGGGGAAGCTCAACCACTTC 60.956 60.000 5.50 0.00 41.28 3.01
820 889 2.262423 GAAGCTCAACCACTTCCTGT 57.738 50.000 0.00 0.00 37.01 4.00
821 890 2.576615 GAAGCTCAACCACTTCCTGTT 58.423 47.619 0.00 0.00 37.01 3.16
822 891 1.972872 AGCTCAACCACTTCCTGTTG 58.027 50.000 0.00 0.00 42.46 3.33
823 892 0.954452 GCTCAACCACTTCCTGTTGG 59.046 55.000 0.00 0.00 41.64 3.77
824 893 1.609208 CTCAACCACTTCCTGTTGGG 58.391 55.000 0.00 0.00 41.64 4.12
825 894 1.142870 CTCAACCACTTCCTGTTGGGA 59.857 52.381 0.00 0.00 44.03 4.37
826 895 1.142870 TCAACCACTTCCTGTTGGGAG 59.857 52.381 0.00 0.00 46.01 4.30
827 896 1.142870 CAACCACTTCCTGTTGGGAGA 59.857 52.381 0.00 0.00 46.01 3.71
828 897 1.518367 ACCACTTCCTGTTGGGAGAA 58.482 50.000 0.00 0.00 46.01 2.87
829 898 1.421646 ACCACTTCCTGTTGGGAGAAG 59.578 52.381 0.00 0.00 46.01 2.85
831 900 2.637872 CCACTTCCTGTTGGGAGAAGTA 59.362 50.000 4.46 0.00 46.41 2.24
832 901 3.072476 CCACTTCCTGTTGGGAGAAGTAA 59.928 47.826 4.46 0.00 46.41 2.24
833 902 4.445735 CCACTTCCTGTTGGGAGAAGTAAA 60.446 45.833 4.46 0.00 46.41 2.01
834 903 4.757149 CACTTCCTGTTGGGAGAAGTAAAG 59.243 45.833 4.46 0.00 46.41 1.85
835 904 4.658901 ACTTCCTGTTGGGAGAAGTAAAGA 59.341 41.667 2.94 0.00 46.32 2.52
836 905 5.310857 ACTTCCTGTTGGGAGAAGTAAAGAT 59.689 40.000 2.94 0.00 46.32 2.40
837 906 5.422214 TCCTGTTGGGAGAAGTAAAGATC 57.578 43.478 0.00 0.00 39.58 2.75
838 907 4.844085 TCCTGTTGGGAGAAGTAAAGATCA 59.156 41.667 0.00 0.00 39.58 2.92
839 908 4.938226 CCTGTTGGGAGAAGTAAAGATCAC 59.062 45.833 0.00 0.00 37.23 3.06
840 909 5.280215 CCTGTTGGGAGAAGTAAAGATCACT 60.280 44.000 0.00 0.00 37.23 3.41
841 910 6.070767 CCTGTTGGGAGAAGTAAAGATCACTA 60.071 42.308 0.00 0.00 37.23 2.74
842 911 6.936279 TGTTGGGAGAAGTAAAGATCACTAG 58.064 40.000 0.00 0.00 0.00 2.57
843 912 6.497259 TGTTGGGAGAAGTAAAGATCACTAGT 59.503 38.462 0.00 0.00 0.00 2.57
844 913 7.672660 TGTTGGGAGAAGTAAAGATCACTAGTA 59.327 37.037 0.00 0.00 0.00 1.82
845 914 7.883391 TGGGAGAAGTAAAGATCACTAGTAG 57.117 40.000 0.00 0.00 0.00 2.57
846 915 6.321690 TGGGAGAAGTAAAGATCACTAGTAGC 59.678 42.308 0.00 0.00 0.00 3.58
847 916 6.321690 GGGAGAAGTAAAGATCACTAGTAGCA 59.678 42.308 0.00 0.00 0.00 3.49
848 917 7.014808 GGGAGAAGTAAAGATCACTAGTAGCAT 59.985 40.741 0.00 0.00 0.00 3.79
849 918 8.417884 GGAGAAGTAAAGATCACTAGTAGCATT 58.582 37.037 0.00 0.00 0.00 3.56
850 919 9.810545 GAGAAGTAAAGATCACTAGTAGCATTT 57.189 33.333 0.00 0.00 0.00 2.32
854 923 9.804758 AGTAAAGATCACTAGTAGCATTTACAC 57.195 33.333 22.10 9.58 35.41 2.90
855 924 9.804758 GTAAAGATCACTAGTAGCATTTACACT 57.195 33.333 18.57 0.00 33.94 3.55
858 927 7.653647 AGATCACTAGTAGCATTTACACTAGC 58.346 38.462 0.00 0.00 43.60 3.42
859 928 5.817988 TCACTAGTAGCATTTACACTAGCG 58.182 41.667 0.00 0.00 43.60 4.26
860 929 5.356190 TCACTAGTAGCATTTACACTAGCGT 59.644 40.000 0.00 0.00 43.60 5.07
861 930 6.034591 CACTAGTAGCATTTACACTAGCGTT 58.965 40.000 0.00 0.00 43.60 4.84
862 931 6.530534 CACTAGTAGCATTTACACTAGCGTTT 59.469 38.462 0.00 0.00 43.60 3.60
863 932 6.750963 ACTAGTAGCATTTACACTAGCGTTTC 59.249 38.462 0.00 0.00 43.60 2.78
864 933 5.475719 AGTAGCATTTACACTAGCGTTTCA 58.524 37.500 0.00 0.00 0.00 2.69
865 934 4.928661 AGCATTTACACTAGCGTTTCAG 57.071 40.909 0.00 0.00 0.00 3.02
866 935 4.315803 AGCATTTACACTAGCGTTTCAGT 58.684 39.130 0.00 0.00 0.00 3.41
867 936 5.475719 AGCATTTACACTAGCGTTTCAGTA 58.524 37.500 0.00 0.00 0.00 2.74
868 937 6.106673 AGCATTTACACTAGCGTTTCAGTAT 58.893 36.000 0.00 0.00 0.00 2.12
869 938 6.036083 AGCATTTACACTAGCGTTTCAGTATG 59.964 38.462 0.00 0.00 37.54 2.39
884 953 5.798015 TCAGTATGAGACTCTTCGTGTAC 57.202 43.478 3.68 0.00 42.56 2.90
885 954 5.243207 TCAGTATGAGACTCTTCGTGTACA 58.757 41.667 3.68 0.00 42.56 2.90
886 955 5.351740 TCAGTATGAGACTCTTCGTGTACAG 59.648 44.000 3.68 0.00 42.56 2.74
887 956 2.991434 TGAGACTCTTCGTGTACAGC 57.009 50.000 3.68 0.00 0.00 4.40
888 957 1.540267 TGAGACTCTTCGTGTACAGCC 59.460 52.381 3.68 0.00 0.00 4.85
889 958 1.813786 GAGACTCTTCGTGTACAGCCT 59.186 52.381 0.00 0.00 0.00 4.58
890 959 1.813786 AGACTCTTCGTGTACAGCCTC 59.186 52.381 0.00 0.00 0.00 4.70
891 960 1.813786 GACTCTTCGTGTACAGCCTCT 59.186 52.381 0.00 0.00 0.00 3.69
892 961 3.008330 GACTCTTCGTGTACAGCCTCTA 58.992 50.000 0.00 0.00 0.00 2.43
893 962 3.011119 ACTCTTCGTGTACAGCCTCTAG 58.989 50.000 0.00 0.00 0.00 2.43
894 963 1.743958 TCTTCGTGTACAGCCTCTAGC 59.256 52.381 0.00 0.00 44.25 3.42
910 979 3.595819 GCACCCTGCAGATTCCAC 58.404 61.111 17.39 0.00 44.26 4.02
911 980 2.401766 GCACCCTGCAGATTCCACG 61.402 63.158 17.39 0.00 44.26 4.94
912 981 2.045926 ACCCTGCAGATTCCACGC 60.046 61.111 17.39 0.00 0.00 5.34
913 982 2.046023 CCCTGCAGATTCCACGCA 60.046 61.111 17.39 0.00 0.00 5.24
914 983 1.675310 CCCTGCAGATTCCACGCAA 60.675 57.895 17.39 0.00 34.75 4.85
915 984 1.503542 CCTGCAGATTCCACGCAAC 59.496 57.895 17.39 0.00 34.75 4.17
916 985 1.503542 CTGCAGATTCCACGCAACC 59.496 57.895 8.42 0.00 34.75 3.77
917 986 1.228094 TGCAGATTCCACGCAACCA 60.228 52.632 0.00 0.00 31.46 3.67
918 987 0.608856 TGCAGATTCCACGCAACCAT 60.609 50.000 0.00 0.00 31.46 3.55
919 988 0.527565 GCAGATTCCACGCAACCATT 59.472 50.000 0.00 0.00 0.00 3.16
920 989 1.742831 GCAGATTCCACGCAACCATTA 59.257 47.619 0.00 0.00 0.00 1.90
921 990 2.163412 GCAGATTCCACGCAACCATTAA 59.837 45.455 0.00 0.00 0.00 1.40
922 991 3.366883 GCAGATTCCACGCAACCATTAAA 60.367 43.478 0.00 0.00 0.00 1.52
923 992 4.165779 CAGATTCCACGCAACCATTAAAC 58.834 43.478 0.00 0.00 0.00 2.01
924 993 3.192633 AGATTCCACGCAACCATTAAACC 59.807 43.478 0.00 0.00 0.00 3.27
925 994 1.982660 TCCACGCAACCATTAAACCA 58.017 45.000 0.00 0.00 0.00 3.67
926 995 2.520069 TCCACGCAACCATTAAACCAT 58.480 42.857 0.00 0.00 0.00 3.55
927 996 2.230025 TCCACGCAACCATTAAACCATG 59.770 45.455 0.00 0.00 0.00 3.66
928 997 1.991965 CACGCAACCATTAAACCATGC 59.008 47.619 0.00 0.00 0.00 4.06
929 998 1.067213 ACGCAACCATTAAACCATGCC 60.067 47.619 0.00 0.00 0.00 4.40
930 999 1.738700 CGCAACCATTAAACCATGCCC 60.739 52.381 0.00 0.00 0.00 5.36
931 1000 1.277557 GCAACCATTAAACCATGCCCA 59.722 47.619 0.00 0.00 0.00 5.36
932 1001 2.934801 GCAACCATTAAACCATGCCCAC 60.935 50.000 0.00 0.00 0.00 4.61
933 1002 1.567357 ACCATTAAACCATGCCCACC 58.433 50.000 0.00 0.00 0.00 4.61
934 1003 0.829990 CCATTAAACCATGCCCACCC 59.170 55.000 0.00 0.00 0.00 4.61
935 1004 0.829990 CATTAAACCATGCCCACCCC 59.170 55.000 0.00 0.00 0.00 4.95
936 1005 0.415429 ATTAAACCATGCCCACCCCA 59.585 50.000 0.00 0.00 0.00 4.96
937 1006 0.415429 TTAAACCATGCCCACCCCAT 59.585 50.000 0.00 0.00 0.00 4.00
938 1007 0.325110 TAAACCATGCCCACCCCATG 60.325 55.000 0.00 0.00 39.74 3.66
939 1008 4.783501 ACCATGCCCACCCCATGC 62.784 66.667 0.00 0.00 38.93 4.06
957 1026 5.395682 CATGCCCATGGTGGATATTTAAG 57.604 43.478 11.73 0.00 40.96 1.85
958 1027 3.843422 TGCCCATGGTGGATATTTAAGG 58.157 45.455 11.73 0.00 40.96 2.69
959 1028 3.165071 GCCCATGGTGGATATTTAAGGG 58.835 50.000 11.73 0.00 40.96 3.95
960 1029 3.165071 CCCATGGTGGATATTTAAGGGC 58.835 50.000 11.73 0.00 40.96 5.19
961 1030 3.165071 CCATGGTGGATATTTAAGGGCC 58.835 50.000 2.57 0.00 40.96 5.80
962 1031 3.181418 CCATGGTGGATATTTAAGGGCCT 60.181 47.826 0.00 0.00 40.96 5.19
963 1032 3.876309 TGGTGGATATTTAAGGGCCTC 57.124 47.619 6.46 0.00 0.00 4.70
964 1033 3.127250 TGGTGGATATTTAAGGGCCTCA 58.873 45.455 6.46 0.00 0.00 3.86
965 1034 3.138283 TGGTGGATATTTAAGGGCCTCAG 59.862 47.826 6.46 0.00 0.00 3.35
989 1058 6.258068 AGTTAGTTTCAGAAGTTGTAGCACAC 59.742 38.462 0.00 0.00 0.00 3.82
1042 1111 1.480219 GGTCGCCGTCAAGCTATTCG 61.480 60.000 0.00 0.00 0.00 3.34
1099 1168 1.002250 CGACAAGGACTTCGTGGACG 61.002 60.000 0.00 0.00 41.45 4.79
1176 1245 0.616111 AGTCTCAGATCGGGTGCCTT 60.616 55.000 0.00 0.00 0.00 4.35
1232 1301 0.521735 GATCACTTCCAAACCACGGC 59.478 55.000 0.00 0.00 0.00 5.68
1332 1401 3.614176 CCGATCTGACGGCAATATATGTG 59.386 47.826 0.00 0.00 46.20 3.21
1343 1412 5.100751 GCAATATATGTGTGCCTTCAGTC 57.899 43.478 0.00 0.00 31.94 3.51
1344 1413 4.319046 GCAATATATGTGTGCCTTCAGTCG 60.319 45.833 0.00 0.00 31.94 4.18
1354 1423 3.288308 CTTCAGTCGGGCTGCTCGT 62.288 63.158 22.59 0.00 44.66 4.18
1401 1476 2.332654 CCGGGGTGTTACTTGCAGC 61.333 63.158 0.00 0.00 0.00 5.25
1408 1483 1.002468 GTGTTACTTGCAGCTGTGGTG 60.002 52.381 16.64 6.12 0.00 4.17
1437 1515 2.423446 GGCACTAGGAGATGGCCG 59.577 66.667 0.00 0.00 35.43 6.13
1459 1537 0.389687 AAGCTCTCTCGTTGCTGCTC 60.390 55.000 0.00 0.00 37.11 4.26
1512 1594 4.437239 GTGGATCGAAGTTCATCATCACT 58.563 43.478 3.32 0.00 0.00 3.41
1515 1597 4.505922 GGATCGAAGTTCATCATCACTGAC 59.494 45.833 3.32 0.00 33.22 3.51
1537 1619 1.361204 TCTCCATGTTGCTCCTTCCA 58.639 50.000 0.00 0.00 0.00 3.53
1591 1673 0.329261 TGGGCTCCATGAAGAACTGG 59.671 55.000 0.00 0.00 0.00 4.00
1637 1719 5.419542 TCTCAATTCCAATAAGGTCTGTCG 58.580 41.667 0.00 0.00 39.02 4.35
1647 1805 3.791973 AAGGTCTGTCGCTCTATCTTG 57.208 47.619 0.00 0.00 0.00 3.02
1648 1806 2.729194 AGGTCTGTCGCTCTATCTTGT 58.271 47.619 0.00 0.00 0.00 3.16
1689 1851 5.852282 ATTCCCACCGATTATTTTTGGAG 57.148 39.130 0.00 0.00 0.00 3.86
1690 1852 4.577988 TCCCACCGATTATTTTTGGAGA 57.422 40.909 0.00 0.00 0.00 3.71
1691 1853 5.124036 TCCCACCGATTATTTTTGGAGAT 57.876 39.130 0.00 0.00 0.00 2.75
1693 1855 5.359576 TCCCACCGATTATTTTTGGAGATTG 59.640 40.000 0.00 0.00 0.00 2.67
1696 1858 6.460123 CCACCGATTATTTTTGGAGATTGGAG 60.460 42.308 0.00 0.00 0.00 3.86
1697 1859 6.318648 CACCGATTATTTTTGGAGATTGGAGA 59.681 38.462 0.00 0.00 0.00 3.71
1722 1884 6.949352 ATCTGTTCTATAGTGCAAATTGGG 57.051 37.500 0.00 0.00 0.00 4.12
1728 1890 8.592809 TGTTCTATAGTGCAAATTGGGAAATTT 58.407 29.630 0.00 0.00 32.97 1.82
1729 1891 9.087424 GTTCTATAGTGCAAATTGGGAAATTTC 57.913 33.333 9.83 9.83 30.51 2.17
1731 1893 9.693739 TCTATAGTGCAAATTGGGAAATTTCTA 57.306 29.630 17.42 5.03 30.51 2.10
1839 2233 3.562781 TTTCGATGTTGCTATAACGCG 57.437 42.857 3.53 3.53 0.00 6.01
1841 2235 0.506932 CGATGTTGCTATAACGCGGG 59.493 55.000 12.47 0.00 0.00 6.13
1846 2240 0.466543 TTGCTATAACGCGGGATGGT 59.533 50.000 12.47 0.00 0.00 3.55
1879 2273 3.152341 CCAGCTTCCTCACAATCTGTTT 58.848 45.455 0.00 0.00 0.00 2.83
1900 2294 0.675083 CACCACAAGCAATTGAGGCA 59.325 50.000 10.34 0.00 36.34 4.75
1905 2299 1.174783 CAAGCAATTGAGGCAGAGCT 58.825 50.000 10.34 0.00 0.00 4.09
1969 2363 0.319083 ATTCCTCGGTGTTGTACGCA 59.681 50.000 0.00 0.00 0.00 5.24
1999 2393 9.020813 GTTAAACAAGACTTGGTTGATCTTTTC 57.979 33.333 25.49 3.82 41.48 2.29
2033 2427 5.387113 TTGCATTCCTGTTGGGTCTATAT 57.613 39.130 0.00 0.00 36.25 0.86
2127 2521 5.888691 TGTGTAAAACAAGACTGCAGAAA 57.111 34.783 23.35 0.00 35.24 2.52
2271 2668 2.578021 CCCCCAAAAGAGGAGATGAAGA 59.422 50.000 0.00 0.00 0.00 2.87
2339 2736 4.640201 TGACTGATGATCTGTGTATCGTCA 59.360 41.667 9.77 8.13 45.34 4.35
2396 2793 1.305213 GCCAAGATTCCCAAGGGCA 60.305 57.895 0.00 0.00 41.02 5.36
2419 2816 2.413453 GCTTGTGGAGAAAGAGCTAACG 59.587 50.000 0.00 0.00 0.00 3.18
2441 2842 3.191371 GCTTGACAAAACCCAGGTATCAG 59.809 47.826 0.00 0.00 0.00 2.90
2462 2876 3.262915 AGCAAGGCAAGAGAAGTACATCT 59.737 43.478 0.00 0.00 0.00 2.90
2560 2982 4.024556 GCTGTAATGATTACTCGCAATGCT 60.025 41.667 15.57 0.00 37.06 3.79
2588 3010 1.539827 GCGTGCTCTTACCACCAATTT 59.460 47.619 0.00 0.00 0.00 1.82
2589 3011 2.668279 GCGTGCTCTTACCACCAATTTG 60.668 50.000 0.00 0.00 0.00 2.32
2591 3013 3.364964 CGTGCTCTTACCACCAATTTGAC 60.365 47.826 0.00 0.00 0.00 3.18
2597 3019 4.518970 TCTTACCACCAATTTGACAGAAGC 59.481 41.667 0.00 0.00 0.00 3.86
2598 3020 2.665165 ACCACCAATTTGACAGAAGCA 58.335 42.857 0.00 0.00 0.00 3.91
2610 3032 1.074405 ACAGAAGCATGTCACCACCAT 59.926 47.619 0.00 0.00 0.00 3.55
2614 3036 1.746615 GCATGTCACCACCATCGCT 60.747 57.895 0.00 0.00 0.00 4.93
2653 3075 1.893808 CGCCATGGCATCAGTACCC 60.894 63.158 34.93 2.99 42.06 3.69
2656 3078 1.227943 CATGGCATCAGTACCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
2659 3081 2.270850 GCATCAGTACCCCCGCAA 59.729 61.111 0.00 0.00 0.00 4.85
2751 3175 3.077359 ACGAAAGATGCCAAGAAGAAGG 58.923 45.455 0.00 0.00 0.00 3.46
2777 3201 2.093658 TCTGCGAACTTAGGATTGTCCC 60.094 50.000 0.00 0.00 37.19 4.46
2814 3238 1.135859 GCGTCTCAGTTGCTTGAATGG 60.136 52.381 0.00 0.00 0.00 3.16
2829 3253 0.957395 AATGGAGCAACTGTCCTGCG 60.957 55.000 0.00 0.00 44.75 5.18
2836 3260 1.878953 CAACTGTCCTGCGGTTTACT 58.121 50.000 0.00 0.00 43.74 2.24
2937 3361 3.122948 CGAGTGATTGGAAACACTTACCG 59.877 47.826 4.06 0.78 45.54 4.02
2939 3363 2.095415 GTGATTGGAAACACTTACCGCC 60.095 50.000 0.00 0.00 42.67 6.13
2947 3371 3.817148 AACACTTACCGCCGTTAAATG 57.183 42.857 0.00 0.00 0.00 2.32
2990 3414 2.093658 GTCGAGGGCAAATCCTGTTCTA 60.094 50.000 0.00 0.00 37.25 2.10
3033 3459 9.994432 AAATCTCATGAAGCTTTATTTAACTCG 57.006 29.630 0.00 0.00 0.00 4.18
3037 3463 8.317891 TCATGAAGCTTTATTTAACTCGTCAA 57.682 30.769 0.00 0.00 0.00 3.18
3076 3502 0.831307 GTAAGATCTCCCGGGTTGCT 59.169 55.000 22.86 11.17 0.00 3.91
3077 3503 0.830648 TAAGATCTCCCGGGTTGCTG 59.169 55.000 22.86 7.11 0.00 4.41
3220 3647 2.677199 TCTCTGCTTGATGTCGTTGAC 58.323 47.619 0.00 0.00 0.00 3.18
3323 3757 2.007049 GCATCTAGTGTGGTTGGGTCG 61.007 57.143 0.00 0.00 0.00 4.79
3337 3771 0.107654 GGGTCGGAGATTCCCACAAG 60.108 60.000 0.00 0.00 41.94 3.16
3454 3898 9.825972 ACATTAATTTTCTTCATATTATCCGCG 57.174 29.630 0.00 0.00 0.00 6.46
3475 3919 2.045926 GCAACCCATCCGCTCTGT 60.046 61.111 0.00 0.00 0.00 3.41
3490 3935 1.871418 TCTGTCTAGCAGGGATGCTT 58.129 50.000 8.20 0.00 43.52 3.91
3492 3937 0.543277 TGTCTAGCAGGGATGCTTGG 59.457 55.000 8.20 2.75 43.52 3.61
3493 3938 0.817229 GTCTAGCAGGGATGCTTGGC 60.817 60.000 8.20 4.27 43.52 4.52
3527 3972 1.099879 ATGGCTTCTTCATCGCCTGC 61.100 55.000 0.00 0.00 44.09 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 188 1.608590 ACCCGAGACTTAAAACGTCGA 59.391 47.619 0.00 0.00 36.53 4.20
275 292 6.535508 CCGGTTTGACAAGATTTAACCAAAAA 59.464 34.615 0.00 0.00 38.49 1.94
517 544 8.264347 ACCATAGTTTGACCAAAATTCAAAAGT 58.736 29.630 0.75 0.00 42.98 2.66
518 545 8.661352 ACCATAGTTTGACCAAAATTCAAAAG 57.339 30.769 0.75 0.00 42.98 2.27
537 564 4.023193 GGTTTGACCACAGTTTGACCATAG 60.023 45.833 0.00 0.00 38.42 2.23
538 565 3.886505 GGTTTGACCACAGTTTGACCATA 59.113 43.478 0.00 0.00 38.42 2.74
539 566 2.693074 GGTTTGACCACAGTTTGACCAT 59.307 45.455 0.00 0.00 38.42 3.55
560 620 3.813166 AGTTTGACCATAGTTTGACCACG 59.187 43.478 0.00 0.00 0.00 4.94
676 745 5.396884 GCTGTCAATCCTATTAACCCTCAGT 60.397 44.000 0.00 0.00 0.00 3.41
726 795 1.319541 TGCAGAGGTAGGCGTATCTC 58.680 55.000 17.17 17.17 36.73 2.75
727 796 1.615883 CATGCAGAGGTAGGCGTATCT 59.384 52.381 0.00 0.00 0.00 1.98
728 797 1.613925 TCATGCAGAGGTAGGCGTATC 59.386 52.381 0.00 0.00 0.00 2.24
730 799 1.480789 TTCATGCAGAGGTAGGCGTA 58.519 50.000 0.00 0.00 0.00 4.42
732 801 1.600957 CATTTCATGCAGAGGTAGGCG 59.399 52.381 0.00 0.00 0.00 5.52
733 802 2.357009 CACATTTCATGCAGAGGTAGGC 59.643 50.000 0.00 0.00 0.00 3.93
734 803 3.877559 TCACATTTCATGCAGAGGTAGG 58.122 45.455 0.00 0.00 0.00 3.18
735 804 5.885230 TTTCACATTTCATGCAGAGGTAG 57.115 39.130 0.00 0.00 0.00 3.18
736 805 5.945191 TCATTTCACATTTCATGCAGAGGTA 59.055 36.000 0.00 0.00 0.00 3.08
737 806 4.768448 TCATTTCACATTTCATGCAGAGGT 59.232 37.500 0.00 0.00 0.00 3.85
738 807 5.319140 TCATTTCACATTTCATGCAGAGG 57.681 39.130 0.00 0.00 0.00 3.69
739 808 5.575606 GGTTCATTTCACATTTCATGCAGAG 59.424 40.000 0.00 0.00 0.00 3.35
740 809 5.244402 AGGTTCATTTCACATTTCATGCAGA 59.756 36.000 0.00 0.00 0.00 4.26
741 810 5.475719 AGGTTCATTTCACATTTCATGCAG 58.524 37.500 0.00 0.00 0.00 4.41
742 811 5.471556 AGGTTCATTTCACATTTCATGCA 57.528 34.783 0.00 0.00 0.00 3.96
743 812 7.599998 AGTTAAGGTTCATTTCACATTTCATGC 59.400 33.333 0.00 0.00 0.00 4.06
761 830 9.710818 TGACAGGATTAGAACTATAGTTAAGGT 57.289 33.333 18.03 8.11 38.56 3.50
762 831 9.968870 GTGACAGGATTAGAACTATAGTTAAGG 57.031 37.037 18.03 5.33 38.56 2.69
766 835 9.256228 TGAAGTGACAGGATTAGAACTATAGTT 57.744 33.333 18.05 18.05 41.64 2.24
767 836 8.824756 TGAAGTGACAGGATTAGAACTATAGT 57.175 34.615 0.00 0.00 0.00 2.12
768 837 9.743057 CTTGAAGTGACAGGATTAGAACTATAG 57.257 37.037 0.00 0.00 0.00 1.31
769 838 9.256228 ACTTGAAGTGACAGGATTAGAACTATA 57.744 33.333 0.00 0.00 0.00 1.31
770 839 8.140112 ACTTGAAGTGACAGGATTAGAACTAT 57.860 34.615 0.00 0.00 0.00 2.12
771 840 7.540474 ACTTGAAGTGACAGGATTAGAACTA 57.460 36.000 0.00 0.00 0.00 2.24
772 841 6.426646 ACTTGAAGTGACAGGATTAGAACT 57.573 37.500 0.00 0.00 0.00 3.01
773 842 6.308282 CGTACTTGAAGTGACAGGATTAGAAC 59.692 42.308 8.33 0.00 0.00 3.01
774 843 6.387465 CGTACTTGAAGTGACAGGATTAGAA 58.613 40.000 8.33 0.00 0.00 2.10
775 844 5.105877 CCGTACTTGAAGTGACAGGATTAGA 60.106 44.000 8.33 0.00 0.00 2.10
776 845 5.103000 CCGTACTTGAAGTGACAGGATTAG 58.897 45.833 8.33 0.00 0.00 1.73
777 846 4.081862 CCCGTACTTGAAGTGACAGGATTA 60.082 45.833 8.33 0.00 0.00 1.75
778 847 3.306780 CCCGTACTTGAAGTGACAGGATT 60.307 47.826 8.33 0.00 0.00 3.01
779 848 2.233922 CCCGTACTTGAAGTGACAGGAT 59.766 50.000 8.33 0.00 0.00 3.24
780 849 1.616865 CCCGTACTTGAAGTGACAGGA 59.383 52.381 8.33 0.00 0.00 3.86
781 850 1.337823 CCCCGTACTTGAAGTGACAGG 60.338 57.143 8.33 5.76 0.00 4.00
782 851 1.616865 TCCCCGTACTTGAAGTGACAG 59.383 52.381 8.33 0.00 0.00 3.51
783 852 1.707106 TCCCCGTACTTGAAGTGACA 58.293 50.000 8.33 0.00 0.00 3.58
784 853 2.685100 CTTCCCCGTACTTGAAGTGAC 58.315 52.381 8.33 1.90 32.68 3.67
785 854 1.001633 GCTTCCCCGTACTTGAAGTGA 59.998 52.381 8.33 0.00 38.18 3.41
786 855 1.002087 AGCTTCCCCGTACTTGAAGTG 59.998 52.381 8.33 0.00 38.18 3.16
787 856 1.275573 GAGCTTCCCCGTACTTGAAGT 59.724 52.381 2.37 2.37 38.18 3.01
788 857 1.275291 TGAGCTTCCCCGTACTTGAAG 59.725 52.381 10.04 10.04 38.77 3.02
789 858 1.344065 TGAGCTTCCCCGTACTTGAA 58.656 50.000 0.00 0.00 0.00 2.69
790 859 1.001633 GTTGAGCTTCCCCGTACTTGA 59.998 52.381 0.00 0.00 0.00 3.02
791 860 1.439679 GTTGAGCTTCCCCGTACTTG 58.560 55.000 0.00 0.00 0.00 3.16
792 861 0.323957 GGTTGAGCTTCCCCGTACTT 59.676 55.000 0.00 0.00 0.00 2.24
793 862 0.834687 TGGTTGAGCTTCCCCGTACT 60.835 55.000 0.00 0.00 0.00 2.73
794 863 0.672711 GTGGTTGAGCTTCCCCGTAC 60.673 60.000 0.00 0.00 0.00 3.67
795 864 0.834687 AGTGGTTGAGCTTCCCCGTA 60.835 55.000 0.00 0.00 0.00 4.02
796 865 1.705997 AAGTGGTTGAGCTTCCCCGT 61.706 55.000 0.00 0.00 0.00 5.28
797 866 0.955919 GAAGTGGTTGAGCTTCCCCG 60.956 60.000 0.00 0.00 36.14 5.73
798 867 2.948386 GAAGTGGTTGAGCTTCCCC 58.052 57.895 0.00 0.00 36.14 4.81
801 870 2.262423 ACAGGAAGTGGTTGAGCTTC 57.738 50.000 0.00 0.00 40.07 3.86
802 871 2.301346 CAACAGGAAGTGGTTGAGCTT 58.699 47.619 0.00 0.00 45.50 3.74
803 872 1.477558 CCAACAGGAAGTGGTTGAGCT 60.478 52.381 6.12 0.00 45.50 4.09
804 873 0.954452 CCAACAGGAAGTGGTTGAGC 59.046 55.000 6.12 0.00 45.50 4.26
805 874 1.142870 TCCCAACAGGAAGTGGTTGAG 59.857 52.381 6.12 0.00 45.50 3.02
806 875 1.142870 CTCCCAACAGGAAGTGGTTGA 59.857 52.381 6.12 0.00 46.94 3.18
807 876 1.142870 TCTCCCAACAGGAAGTGGTTG 59.857 52.381 0.00 0.00 46.94 3.77
808 877 1.518367 TCTCCCAACAGGAAGTGGTT 58.482 50.000 0.00 0.00 46.94 3.67
809 878 1.421646 CTTCTCCCAACAGGAAGTGGT 59.578 52.381 0.00 0.00 46.94 4.16
810 879 1.421646 ACTTCTCCCAACAGGAAGTGG 59.578 52.381 6.75 0.00 46.94 4.00
811 880 2.938956 ACTTCTCCCAACAGGAAGTG 57.061 50.000 6.75 0.00 46.94 3.16
812 881 4.658901 TCTTTACTTCTCCCAACAGGAAGT 59.341 41.667 11.39 11.39 46.94 3.01
813 882 5.228945 TCTTTACTTCTCCCAACAGGAAG 57.771 43.478 0.00 0.00 46.94 3.46
814 883 5.309543 TGATCTTTACTTCTCCCAACAGGAA 59.690 40.000 0.00 0.00 46.94 3.36
815 884 4.844085 TGATCTTTACTTCTCCCAACAGGA 59.156 41.667 0.00 0.00 44.91 3.86
816 885 4.938226 GTGATCTTTACTTCTCCCAACAGG 59.062 45.833 0.00 0.00 0.00 4.00
817 886 5.799213 AGTGATCTTTACTTCTCCCAACAG 58.201 41.667 0.00 0.00 0.00 3.16
818 887 5.825593 AGTGATCTTTACTTCTCCCAACA 57.174 39.130 0.00 0.00 0.00 3.33
819 888 6.937392 ACTAGTGATCTTTACTTCTCCCAAC 58.063 40.000 0.00 0.00 0.00 3.77
820 889 7.147880 GCTACTAGTGATCTTTACTTCTCCCAA 60.148 40.741 5.39 0.00 0.00 4.12
821 890 6.321690 GCTACTAGTGATCTTTACTTCTCCCA 59.678 42.308 5.39 0.00 0.00 4.37
822 891 6.321690 TGCTACTAGTGATCTTTACTTCTCCC 59.678 42.308 5.39 0.00 0.00 4.30
823 892 7.336161 TGCTACTAGTGATCTTTACTTCTCC 57.664 40.000 5.39 0.00 0.00 3.71
824 893 9.810545 AAATGCTACTAGTGATCTTTACTTCTC 57.189 33.333 5.39 0.00 0.00 2.87
828 897 9.804758 GTGTAAATGCTACTAGTGATCTTTACT 57.195 33.333 20.99 0.00 32.06 2.24
829 898 9.804758 AGTGTAAATGCTACTAGTGATCTTTAC 57.195 33.333 5.39 13.69 0.00 2.01
832 901 8.138712 GCTAGTGTAAATGCTACTAGTGATCTT 58.861 37.037 5.39 0.00 43.54 2.40
833 902 7.653647 GCTAGTGTAAATGCTACTAGTGATCT 58.346 38.462 5.39 0.00 43.54 2.75
834 903 7.861176 GCTAGTGTAAATGCTACTAGTGATC 57.139 40.000 5.39 0.00 43.54 2.92
838 907 5.831702 ACGCTAGTGTAAATGCTACTAGT 57.168 39.130 7.28 0.00 43.54 2.57
839 908 6.750501 TGAAACGCTAGTGTAAATGCTACTAG 59.249 38.462 9.84 0.00 44.14 2.57
840 909 6.623486 TGAAACGCTAGTGTAAATGCTACTA 58.377 36.000 9.84 0.00 0.00 1.82
841 910 5.475719 TGAAACGCTAGTGTAAATGCTACT 58.524 37.500 9.84 0.00 0.00 2.57
842 911 5.347907 ACTGAAACGCTAGTGTAAATGCTAC 59.652 40.000 9.84 0.00 0.00 3.58
843 912 5.475719 ACTGAAACGCTAGTGTAAATGCTA 58.524 37.500 9.84 0.00 0.00 3.49
844 913 4.315803 ACTGAAACGCTAGTGTAAATGCT 58.684 39.130 9.84 0.00 0.00 3.79
845 914 4.663636 ACTGAAACGCTAGTGTAAATGC 57.336 40.909 9.84 0.00 0.00 3.56
846 915 7.488150 TCTCATACTGAAACGCTAGTGTAAATG 59.512 37.037 9.84 7.58 0.00 2.32
847 916 7.488471 GTCTCATACTGAAACGCTAGTGTAAAT 59.512 37.037 9.84 0.00 0.00 1.40
848 917 6.805271 GTCTCATACTGAAACGCTAGTGTAAA 59.195 38.462 9.84 0.00 0.00 2.01
849 918 6.150641 AGTCTCATACTGAAACGCTAGTGTAA 59.849 38.462 9.84 0.00 36.93 2.41
850 919 5.646793 AGTCTCATACTGAAACGCTAGTGTA 59.353 40.000 9.84 0.00 36.93 2.90
851 920 4.459685 AGTCTCATACTGAAACGCTAGTGT 59.540 41.667 2.24 2.24 36.93 3.55
852 921 4.987832 AGTCTCATACTGAAACGCTAGTG 58.012 43.478 0.59 0.59 36.93 2.74
853 922 4.944930 AGAGTCTCATACTGAAACGCTAGT 59.055 41.667 1.94 0.00 39.07 2.57
854 923 5.493133 AGAGTCTCATACTGAAACGCTAG 57.507 43.478 1.94 0.00 39.07 3.42
855 924 5.447413 CGAAGAGTCTCATACTGAAACGCTA 60.447 44.000 1.94 0.00 39.07 4.26
856 925 4.673061 CGAAGAGTCTCATACTGAAACGCT 60.673 45.833 1.94 0.00 39.07 5.07
857 926 3.544285 CGAAGAGTCTCATACTGAAACGC 59.456 47.826 1.94 0.00 39.07 4.84
858 927 4.555360 CACGAAGAGTCTCATACTGAAACG 59.445 45.833 1.94 0.00 39.07 3.60
859 928 5.462405 ACACGAAGAGTCTCATACTGAAAC 58.538 41.667 1.94 0.00 39.07 2.78
860 929 5.707242 ACACGAAGAGTCTCATACTGAAA 57.293 39.130 1.94 0.00 39.07 2.69
861 930 5.704053 TGTACACGAAGAGTCTCATACTGAA 59.296 40.000 1.94 0.00 39.07 3.02
862 931 5.243207 TGTACACGAAGAGTCTCATACTGA 58.757 41.667 1.94 0.00 39.07 3.41
863 932 5.547181 TGTACACGAAGAGTCTCATACTG 57.453 43.478 1.94 0.00 39.07 2.74
864 933 4.095185 GCTGTACACGAAGAGTCTCATACT 59.905 45.833 1.94 0.00 42.80 2.12
865 934 4.344448 GCTGTACACGAAGAGTCTCATAC 58.656 47.826 1.94 0.00 31.14 2.39
866 935 3.377485 GGCTGTACACGAAGAGTCTCATA 59.623 47.826 1.94 0.00 31.14 2.15
867 936 2.164624 GGCTGTACACGAAGAGTCTCAT 59.835 50.000 1.94 0.00 31.14 2.90
868 937 1.540267 GGCTGTACACGAAGAGTCTCA 59.460 52.381 1.94 0.00 31.14 3.27
869 938 1.813786 AGGCTGTACACGAAGAGTCTC 59.186 52.381 0.00 0.00 31.14 3.36
870 939 1.813786 GAGGCTGTACACGAAGAGTCT 59.186 52.381 0.00 0.00 31.14 3.24
871 940 1.813786 AGAGGCTGTACACGAAGAGTC 59.186 52.381 0.00 0.00 31.14 3.36
872 941 1.912417 AGAGGCTGTACACGAAGAGT 58.088 50.000 0.00 0.00 34.44 3.24
873 942 2.223386 GCTAGAGGCTGTACACGAAGAG 60.223 54.545 0.00 0.00 38.06 2.85
874 943 1.743958 GCTAGAGGCTGTACACGAAGA 59.256 52.381 0.00 0.00 38.06 2.87
875 944 1.472878 TGCTAGAGGCTGTACACGAAG 59.527 52.381 0.00 0.00 42.39 3.79
876 945 1.201647 GTGCTAGAGGCTGTACACGAA 59.798 52.381 0.00 0.00 42.39 3.85
877 946 0.809385 GTGCTAGAGGCTGTACACGA 59.191 55.000 0.00 0.00 42.39 4.35
878 947 0.179134 GGTGCTAGAGGCTGTACACG 60.179 60.000 13.84 0.00 42.39 4.49
879 948 0.175989 GGGTGCTAGAGGCTGTACAC 59.824 60.000 12.65 12.65 42.39 2.90
880 949 0.041238 AGGGTGCTAGAGGCTGTACA 59.959 55.000 0.00 0.00 42.39 2.90
881 950 0.461961 CAGGGTGCTAGAGGCTGTAC 59.538 60.000 0.00 0.00 42.39 2.90
882 951 1.330655 GCAGGGTGCTAGAGGCTGTA 61.331 60.000 0.00 0.00 40.96 2.74
883 952 2.664081 GCAGGGTGCTAGAGGCTGT 61.664 63.158 0.00 0.00 40.96 4.40
884 953 2.188994 GCAGGGTGCTAGAGGCTG 59.811 66.667 0.00 0.00 40.96 4.85
885 954 2.284921 TGCAGGGTGCTAGAGGCT 60.285 61.111 0.00 0.00 45.31 4.58
886 955 1.694133 ATCTGCAGGGTGCTAGAGGC 61.694 60.000 15.13 0.00 45.31 4.70
887 956 0.835941 AATCTGCAGGGTGCTAGAGG 59.164 55.000 15.13 0.00 45.31 3.69
888 957 1.202627 GGAATCTGCAGGGTGCTAGAG 60.203 57.143 15.13 0.00 45.31 2.43
889 958 0.833287 GGAATCTGCAGGGTGCTAGA 59.167 55.000 15.13 2.54 45.31 2.43
890 959 0.543277 TGGAATCTGCAGGGTGCTAG 59.457 55.000 15.13 0.00 45.31 3.42
891 960 0.253044 GTGGAATCTGCAGGGTGCTA 59.747 55.000 15.13 0.00 45.31 3.49
892 961 1.001641 GTGGAATCTGCAGGGTGCT 60.002 57.895 15.13 0.00 45.31 4.40
893 962 2.401766 CGTGGAATCTGCAGGGTGC 61.402 63.158 15.13 7.98 45.29 5.01
894 963 2.401766 GCGTGGAATCTGCAGGGTG 61.402 63.158 15.13 0.00 0.00 4.61
895 964 2.045926 GCGTGGAATCTGCAGGGT 60.046 61.111 15.13 1.13 0.00 4.34
896 965 1.675310 TTGCGTGGAATCTGCAGGG 60.675 57.895 15.13 0.00 40.15 4.45
897 966 1.503542 GTTGCGTGGAATCTGCAGG 59.496 57.895 15.13 0.00 40.15 4.85
898 967 1.236616 TGGTTGCGTGGAATCTGCAG 61.237 55.000 7.63 7.63 40.15 4.41
899 968 0.608856 ATGGTTGCGTGGAATCTGCA 60.609 50.000 0.00 0.00 36.72 4.41
900 969 0.527565 AATGGTTGCGTGGAATCTGC 59.472 50.000 0.00 0.00 0.00 4.26
901 970 4.165779 GTTTAATGGTTGCGTGGAATCTG 58.834 43.478 0.00 0.00 0.00 2.90
902 971 3.192633 GGTTTAATGGTTGCGTGGAATCT 59.807 43.478 0.00 0.00 0.00 2.40
903 972 3.057174 TGGTTTAATGGTTGCGTGGAATC 60.057 43.478 0.00 0.00 0.00 2.52
904 973 2.894126 TGGTTTAATGGTTGCGTGGAAT 59.106 40.909 0.00 0.00 0.00 3.01
905 974 2.307768 TGGTTTAATGGTTGCGTGGAA 58.692 42.857 0.00 0.00 0.00 3.53
906 975 1.982660 TGGTTTAATGGTTGCGTGGA 58.017 45.000 0.00 0.00 0.00 4.02
907 976 2.605030 CATGGTTTAATGGTTGCGTGG 58.395 47.619 0.00 0.00 0.00 4.94
908 977 1.991965 GCATGGTTTAATGGTTGCGTG 59.008 47.619 0.00 0.00 0.00 5.34
909 978 1.067213 GGCATGGTTTAATGGTTGCGT 60.067 47.619 0.00 0.00 0.00 5.24
910 979 1.639280 GGCATGGTTTAATGGTTGCG 58.361 50.000 0.00 0.00 0.00 4.85
911 980 1.277557 TGGGCATGGTTTAATGGTTGC 59.722 47.619 0.00 0.00 0.00 4.17
912 981 2.354604 GGTGGGCATGGTTTAATGGTTG 60.355 50.000 0.00 0.00 0.00 3.77
913 982 1.905894 GGTGGGCATGGTTTAATGGTT 59.094 47.619 0.00 0.00 0.00 3.67
914 983 1.567357 GGTGGGCATGGTTTAATGGT 58.433 50.000 0.00 0.00 0.00 3.55
915 984 0.829990 GGGTGGGCATGGTTTAATGG 59.170 55.000 0.00 0.00 0.00 3.16
916 985 0.829990 GGGGTGGGCATGGTTTAATG 59.170 55.000 0.00 0.00 0.00 1.90
917 986 0.415429 TGGGGTGGGCATGGTTTAAT 59.585 50.000 0.00 0.00 0.00 1.40
918 987 0.415429 ATGGGGTGGGCATGGTTTAA 59.585 50.000 0.00 0.00 0.00 1.52
919 988 0.325110 CATGGGGTGGGCATGGTTTA 60.325 55.000 0.00 0.00 0.00 2.01
920 989 1.613035 CATGGGGTGGGCATGGTTT 60.613 57.895 0.00 0.00 0.00 3.27
921 990 2.039299 CATGGGGTGGGCATGGTT 59.961 61.111 0.00 0.00 0.00 3.67
922 991 4.783501 GCATGGGGTGGGCATGGT 62.784 66.667 0.00 0.00 0.00 3.55
935 1004 4.221262 CCTTAAATATCCACCATGGGCATG 59.779 45.833 18.09 5.17 38.32 4.06
936 1005 4.419282 CCTTAAATATCCACCATGGGCAT 58.581 43.478 18.09 7.12 38.32 4.40
937 1006 3.437784 CCCTTAAATATCCACCATGGGCA 60.438 47.826 18.09 0.00 38.32 5.36
938 1007 3.165071 CCCTTAAATATCCACCATGGGC 58.835 50.000 18.09 0.00 38.32 5.36
939 1008 3.165071 GCCCTTAAATATCCACCATGGG 58.835 50.000 18.09 4.89 38.32 4.00
940 1009 3.165071 GGCCCTTAAATATCCACCATGG 58.835 50.000 11.19 11.19 39.43 3.66
941 1010 4.082125 GAGGCCCTTAAATATCCACCATG 58.918 47.826 0.00 0.00 0.00 3.66
942 1011 3.726859 TGAGGCCCTTAAATATCCACCAT 59.273 43.478 0.00 0.00 0.00 3.55
943 1012 3.127250 TGAGGCCCTTAAATATCCACCA 58.873 45.455 0.00 0.00 0.00 4.17
944 1013 3.138468 ACTGAGGCCCTTAAATATCCACC 59.862 47.826 0.00 0.00 0.00 4.61
945 1014 4.439253 ACTGAGGCCCTTAAATATCCAC 57.561 45.455 0.00 0.00 0.00 4.02
946 1015 5.670361 ACTAACTGAGGCCCTTAAATATCCA 59.330 40.000 0.00 0.00 0.00 3.41
947 1016 6.189036 ACTAACTGAGGCCCTTAAATATCC 57.811 41.667 0.00 0.00 0.00 2.59
948 1017 7.773690 TGAAACTAACTGAGGCCCTTAAATATC 59.226 37.037 0.00 0.00 0.00 1.63
949 1018 7.639378 TGAAACTAACTGAGGCCCTTAAATAT 58.361 34.615 0.00 0.00 0.00 1.28
950 1019 7.023171 TGAAACTAACTGAGGCCCTTAAATA 57.977 36.000 0.00 0.00 0.00 1.40
951 1020 5.887754 TGAAACTAACTGAGGCCCTTAAAT 58.112 37.500 0.00 0.00 0.00 1.40
952 1021 5.072600 TCTGAAACTAACTGAGGCCCTTAAA 59.927 40.000 0.00 0.00 0.00 1.52
953 1022 4.595781 TCTGAAACTAACTGAGGCCCTTAA 59.404 41.667 0.00 0.00 0.00 1.85
954 1023 4.164981 TCTGAAACTAACTGAGGCCCTTA 58.835 43.478 0.00 0.00 0.00 2.69
955 1024 2.979678 TCTGAAACTAACTGAGGCCCTT 59.020 45.455 0.00 0.00 0.00 3.95
956 1025 2.621070 TCTGAAACTAACTGAGGCCCT 58.379 47.619 0.00 0.00 0.00 5.19
957 1026 3.244596 ACTTCTGAAACTAACTGAGGCCC 60.245 47.826 0.00 0.00 0.00 5.80
958 1027 4.009370 ACTTCTGAAACTAACTGAGGCC 57.991 45.455 0.00 0.00 0.00 5.19
959 1028 4.816925 ACAACTTCTGAAACTAACTGAGGC 59.183 41.667 0.00 0.00 0.00 4.70
960 1029 6.146347 GCTACAACTTCTGAAACTAACTGAGG 59.854 42.308 0.00 0.00 0.00 3.86
961 1030 6.701841 TGCTACAACTTCTGAAACTAACTGAG 59.298 38.462 0.00 0.00 0.00 3.35
962 1031 6.479001 GTGCTACAACTTCTGAAACTAACTGA 59.521 38.462 0.00 0.00 0.00 3.41
963 1032 6.257849 TGTGCTACAACTTCTGAAACTAACTG 59.742 38.462 0.00 0.00 0.00 3.16
964 1033 6.258068 GTGTGCTACAACTTCTGAAACTAACT 59.742 38.462 0.00 0.00 0.00 2.24
965 1034 6.258068 AGTGTGCTACAACTTCTGAAACTAAC 59.742 38.462 0.00 0.00 0.00 2.34
989 1058 1.226686 GCTCGACATGGCCTATGCAG 61.227 60.000 3.32 4.47 40.59 4.41
996 1065 3.113745 CCATTGCTCGACATGGCC 58.886 61.111 0.00 0.00 0.00 5.36
1038 1107 3.506455 TCTTCTTCTCCTTGTCGACGAAT 59.494 43.478 11.62 0.00 0.00 3.34
1042 1111 2.094442 CCCTCTTCTTCTCCTTGTCGAC 60.094 54.545 9.11 9.11 0.00 4.20
1099 1168 1.403514 CGTGAGGAAGCTGAAGAGGAC 60.404 57.143 0.00 0.00 0.00 3.85
1176 1245 1.883732 GCTCCTGTACAGCTCGTCA 59.116 57.895 17.86 0.00 33.75 4.35
1232 1301 1.255667 AAGGAGCATGGCCTTGCAAG 61.256 55.000 36.66 19.93 43.84 4.01
1354 1423 4.697756 GTACCGTGGGCTGCAGCA 62.698 66.667 37.63 18.09 44.36 4.41
1363 1432 1.079127 CTGGGCTGAAGTACCGTGG 60.079 63.158 0.00 0.00 0.00 4.94
1366 1435 1.218316 GGACTGGGCTGAAGTACCG 59.782 63.158 0.00 0.00 0.00 4.02
1394 1469 1.871772 GTAGCACCACAGCTGCAAG 59.128 57.895 15.27 5.04 46.11 4.01
1437 1515 0.165511 CAGCAACGAGAGAGCTTTGC 59.834 55.000 9.97 9.97 43.85 3.68
1459 1537 1.755179 ATCCCATCCGCAGTTTCTTG 58.245 50.000 0.00 0.00 0.00 3.02
1484 1565 2.151202 TGAACTTCGATCCACCTTTGC 58.849 47.619 0.00 0.00 0.00 3.68
1512 1594 1.134699 GGAGCAACATGGAGATCGTCA 60.135 52.381 0.00 0.00 0.00 4.35
1515 1597 2.208431 GAAGGAGCAACATGGAGATCG 58.792 52.381 0.00 0.00 0.00 3.69
1537 1619 3.018149 GGGAGAACATGAGACTCGTAGT 58.982 50.000 0.00 0.00 0.00 2.73
1578 1660 5.933617 TCCTTGATATCCAGTTCTTCATGG 58.066 41.667 0.00 0.00 37.97 3.66
1585 1667 3.970640 ACCTCCTCCTTGATATCCAGTTC 59.029 47.826 0.00 0.00 0.00 3.01
1591 1673 3.898123 TGTAGCACCTCCTCCTTGATATC 59.102 47.826 0.00 0.00 0.00 1.63
1661 1819 9.389755 CCAAAAATAATCGGTGGGAATTTTAAT 57.610 29.630 0.00 0.00 31.41 1.40
1670 1828 5.451798 CCAATCTCCAAAAATAATCGGTGGG 60.452 44.000 0.00 0.00 0.00 4.61
1671 1829 5.359576 TCCAATCTCCAAAAATAATCGGTGG 59.640 40.000 0.00 0.00 0.00 4.61
1672 1830 6.318648 TCTCCAATCTCCAAAAATAATCGGTG 59.681 38.462 0.00 0.00 0.00 4.94
1674 1832 6.942532 TCTCCAATCTCCAAAAATAATCGG 57.057 37.500 0.00 0.00 0.00 4.18
1682 1844 7.865820 AGAACAGATATCTCCAATCTCCAAAA 58.134 34.615 1.03 0.00 31.22 2.44
1686 1848 9.474313 ACTATAGAACAGATATCTCCAATCTCC 57.526 37.037 6.78 0.00 31.22 3.71
1689 1851 8.526978 TGCACTATAGAACAGATATCTCCAATC 58.473 37.037 6.78 0.00 0.00 2.67
1690 1852 8.427902 TGCACTATAGAACAGATATCTCCAAT 57.572 34.615 6.78 0.00 0.00 3.16
1691 1853 7.839680 TGCACTATAGAACAGATATCTCCAA 57.160 36.000 6.78 0.00 0.00 3.53
1693 1855 9.717942 AATTTGCACTATAGAACAGATATCTCC 57.282 33.333 6.78 0.00 0.00 3.71
1696 1858 8.725148 CCCAATTTGCACTATAGAACAGATATC 58.275 37.037 6.78 0.00 0.00 1.63
1697 1859 8.439971 TCCCAATTTGCACTATAGAACAGATAT 58.560 33.333 6.78 0.00 0.00 1.63
1839 2233 1.653151 GTAAGAACTCGCACCATCCC 58.347 55.000 0.00 0.00 0.00 3.85
1841 2235 2.271800 CTGGTAAGAACTCGCACCATC 58.728 52.381 6.08 0.00 40.19 3.51
1846 2240 1.337823 GGAAGCTGGTAAGAACTCGCA 60.338 52.381 0.00 0.00 0.00 5.10
1879 2273 0.675083 CCTCAATTGCTTGTGGTGCA 59.325 50.000 0.00 0.00 39.91 4.57
1900 2294 5.049405 CGTTATTGGTTTGAACTTGAGCTCT 60.049 40.000 16.19 0.00 0.00 4.09
1905 2299 7.806014 GCTTTATCGTTATTGGTTTGAACTTGA 59.194 33.333 0.00 0.00 0.00 3.02
1969 2363 7.775561 AGATCAACCAAGTCTTGTTTAACTTCT 59.224 33.333 11.61 2.18 33.53 2.85
1999 2393 1.066645 GGAATGCAAAGGAGGCCAAAG 60.067 52.381 5.01 0.00 0.00 2.77
2033 2427 7.152645 GGTGACAGTTGAGTATAAGTCTTCAA 58.847 38.462 0.00 0.00 0.00 2.69
2127 2521 3.456277 CAGCTTTGGGGATAGGAGTAAGT 59.544 47.826 0.00 0.00 0.00 2.24
2229 2626 5.770162 GGGGATTTTGGATTCATCTCGTAAT 59.230 40.000 0.00 0.00 0.00 1.89
2271 2668 7.988937 TCCATTGACATAAGCCCTATAAGAAT 58.011 34.615 0.00 0.00 0.00 2.40
2330 2727 3.681594 GCCAGGGAGAAATTGACGATACA 60.682 47.826 0.00 0.00 0.00 2.29
2339 2736 1.713078 ACTCTTGGCCAGGGAGAAATT 59.287 47.619 31.34 15.07 0.00 1.82
2396 2793 2.947127 AGCTCTTTCTCCACAAGCTT 57.053 45.000 0.00 0.00 40.26 3.74
2419 2816 3.153919 TGATACCTGGGTTTTGTCAAGC 58.846 45.455 0.00 0.00 0.00 4.01
2441 2842 3.604582 AGATGTACTTCTCTTGCCTTGC 58.395 45.455 5.47 0.00 0.00 4.01
2462 2876 6.774673 ACAAAACTGAAAAAGGGGAGAAAAA 58.225 32.000 0.00 0.00 0.00 1.94
2541 2963 6.146184 GCTTAGAGCATTGCGAGTAATCATTA 59.854 38.462 2.38 0.00 41.89 1.90
2578 3000 2.665165 TGCTTCTGTCAAATTGGTGGT 58.335 42.857 0.00 0.00 0.00 4.16
2581 3003 4.510038 GACATGCTTCTGTCAAATTGGT 57.490 40.909 8.99 0.00 44.03 3.67
2589 3011 1.160137 GGTGGTGACATGCTTCTGTC 58.840 55.000 0.00 7.44 46.14 3.51
2591 3013 1.741706 GATGGTGGTGACATGCTTCTG 59.258 52.381 0.00 0.00 46.14 3.02
2597 3019 1.985447 GCAGCGATGGTGGTGACATG 61.985 60.000 1.46 0.00 46.14 3.21
2598 3020 1.746615 GCAGCGATGGTGGTGACAT 60.747 57.895 1.46 0.00 46.14 3.06
2610 3032 2.086426 GTTGACGTCATCGCAGCGA 61.086 57.895 22.06 22.06 41.13 4.93
2614 3036 0.388520 CTGGAGTTGACGTCATCGCA 60.389 55.000 25.12 16.53 41.18 5.10
2619 3041 2.338620 CGGCTGGAGTTGACGTCA 59.661 61.111 15.76 15.76 0.00 4.35
2653 3075 2.125512 CTCCTTCTCGGTTGCGGG 60.126 66.667 0.00 0.00 0.00 6.13
2656 3078 2.436824 GGGCTCCTTCTCGGTTGC 60.437 66.667 0.00 0.00 34.36 4.17
2679 3103 1.272592 TGATGGCTGAATGGGCTTTCA 60.273 47.619 3.95 3.95 34.55 2.69
2751 3175 4.142600 ACAATCCTAAGTTCGCAGAAATGC 60.143 41.667 0.00 0.00 45.90 3.56
2766 3190 1.349688 AGTTTGCACGGGACAATCCTA 59.650 47.619 0.00 0.00 36.57 2.94
2793 3217 1.135859 CATTCAAGCAACTGAGACGCC 60.136 52.381 0.00 0.00 0.00 5.68
2853 3277 8.496707 AAAAATCAAGCAACTGAAACAGATTT 57.503 26.923 5.76 0.00 36.38 2.17
2904 3328 6.662414 TTCCAATCACTCGAAACATGATAC 57.338 37.500 0.00 0.00 32.74 2.24
2905 3329 6.652900 TGTTTCCAATCACTCGAAACATGATA 59.347 34.615 9.80 0.00 46.28 2.15
2906 3330 5.473162 TGTTTCCAATCACTCGAAACATGAT 59.527 36.000 9.80 0.00 46.28 2.45
2933 3357 4.222105 GCCCATTTAACGGCGGTA 57.778 55.556 13.24 6.06 34.94 4.02
2937 3361 2.663826 TTGAATGCCCATTTAACGGC 57.336 45.000 1.24 1.24 45.92 5.68
2939 3363 5.636965 TCAACATTTGAATGCCCATTTAACG 59.363 36.000 3.71 0.00 40.04 3.18
3033 3459 8.816640 ACTTTCATCCATGTAAACATTTTGAC 57.183 30.769 0.00 0.00 33.61 3.18
3076 3502 0.466372 TGGCCGTCATGTTTGGTTCA 60.466 50.000 0.00 0.00 0.00 3.18
3077 3503 0.671251 TTGGCCGTCATGTTTGGTTC 59.329 50.000 0.00 0.00 0.00 3.62
3323 3757 3.739519 CGATCACTCTTGTGGGAATCTCC 60.740 52.174 0.00 0.00 43.94 3.71
3337 3771 1.066858 TGGGAGCTTCAACGATCACTC 60.067 52.381 0.00 0.00 0.00 3.51
3404 3838 1.028868 GCCGCTCTTGGAATGCTTCT 61.029 55.000 0.00 0.00 0.00 2.85
3484 3929 1.452833 GTGAGAGGGGCCAAGCATC 60.453 63.158 4.39 0.00 0.00 3.91
3485 3930 0.621571 TAGTGAGAGGGGCCAAGCAT 60.622 55.000 4.39 0.00 0.00 3.79
3486 3931 1.229496 TAGTGAGAGGGGCCAAGCA 60.229 57.895 4.39 0.00 0.00 3.91
3487 3932 1.222113 GTAGTGAGAGGGGCCAAGC 59.778 63.158 4.39 0.00 0.00 4.01
3488 3933 1.280457 AAGTAGTGAGAGGGGCCAAG 58.720 55.000 4.39 0.00 0.00 3.61
3490 3935 2.398588 CATAAGTAGTGAGAGGGGCCA 58.601 52.381 4.39 0.00 0.00 5.36
3492 3937 1.070914 GCCATAAGTAGTGAGAGGGGC 59.929 57.143 0.00 0.00 0.00 5.80
3493 3938 2.683768 AGCCATAAGTAGTGAGAGGGG 58.316 52.381 0.00 0.00 0.00 4.79
3527 3972 8.658499 TCATCAACTCATTCATAGATGACTTG 57.342 34.615 0.00 0.00 37.53 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.