Multiple sequence alignment - TraesCS1B01G412000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G412000 chr1B 100.000 2491 0 0 1 2491 637947814 637950304 0.000000e+00 4601.0
1 TraesCS1B01G412000 chr1B 100.000 299 0 0 2662 2960 637950475 637950773 1.200000e-153 553.0
2 TraesCS1B01G412000 chr1B 88.172 186 17 3 2158 2340 98732942 98733125 1.790000e-52 217.0
3 TraesCS1B01G412000 chr1B 79.612 103 13 7 616 714 611135110 611135012 1.900000e-07 67.6
4 TraesCS1B01G412000 chr1B 97.368 38 1 0 1320 1357 637894359 637894322 6.850000e-07 65.8
5 TraesCS1B01G412000 chr1A 89.699 1330 79 28 725 2031 554875116 554876410 0.000000e+00 1644.0
6 TraesCS1B01G412000 chr1A 82.667 225 13 9 399 614 554874905 554875112 3.030000e-40 176.0
7 TraesCS1B01G412000 chr1A 85.593 118 13 2 2375 2491 148004051 148003937 1.440000e-23 121.0
8 TraesCS1B01G412000 chr1A 95.652 46 2 0 2044 2089 554876488 554876533 1.140000e-09 75.0
9 TraesCS1B01G412000 chr4A 84.824 883 119 12 1042 1918 683930014 683930887 0.000000e+00 874.0
10 TraesCS1B01G412000 chr4A 87.608 347 30 3 2158 2491 702774888 702775234 9.950000e-105 390.0
11 TraesCS1B01G412000 chr4A 86.628 344 32 7 2158 2488 701106448 701106106 4.660000e-98 368.0
12 TraesCS1B01G412000 chr4A 86.377 345 34 3 2160 2491 701193282 701192938 6.030000e-97 364.0
13 TraesCS1B01G412000 chr4A 88.387 155 15 1 2804 2958 555863461 555863612 1.810000e-42 183.0
14 TraesCS1B01G412000 chr4A 93.750 48 1 2 617 663 550486489 550486535 1.470000e-08 71.3
15 TraesCS1B01G412000 chr4B 84.336 881 123 11 1044 1918 601775151 601776022 0.000000e+00 848.0
16 TraesCS1B01G412000 chr4B 89.024 82 5 1 805 882 601774888 601774969 6.750000e-17 99.0
17 TraesCS1B01G412000 chr4D 84.276 884 122 14 1042 1918 477150729 477151602 0.000000e+00 846.0
18 TraesCS1B01G412000 chr4D 96.721 61 1 1 663 722 424575815 424575875 1.880000e-17 100.0
19 TraesCS1B01G412000 chr4D 87.356 87 7 1 805 887 477150475 477150561 2.430000e-16 97.1
20 TraesCS1B01G412000 chrUn 89.790 333 29 3 2158 2486 403758324 403758655 3.530000e-114 422.0
21 TraesCS1B01G412000 chrUn 89.457 313 29 2 2158 2466 406054513 406054201 2.770000e-105 392.0
22 TraesCS1B01G412000 chrUn 96.721 61 1 1 663 722 61932928 61932868 1.880000e-17 100.0
23 TraesCS1B01G412000 chrUn 96.721 61 1 1 663 722 361889928 361889868 1.880000e-17 100.0
24 TraesCS1B01G412000 chrUn 96.721 61 1 1 663 722 405003038 405002978 1.880000e-17 100.0
25 TraesCS1B01G412000 chrUn 87.324 71 7 2 612 681 286829219 286829150 2.450000e-11 80.5
26 TraesCS1B01G412000 chrUn 87.324 71 7 2 612 681 286835430 286835361 2.450000e-11 80.5
27 TraesCS1B01G412000 chrUn 87.324 71 7 2 612 681 326266450 326266381 2.450000e-11 80.5
28 TraesCS1B01G412000 chr1D 89.189 333 31 3 2158 2486 468187208 468187539 7.640000e-111 411.0
29 TraesCS1B01G412000 chr1D 86.340 388 26 9 1725 2085 463001725 463002112 5.940000e-107 398.0
30 TraesCS1B01G412000 chr1D 89.474 152 16 0 2804 2955 452693891 452694042 3.010000e-45 193.0
31 TraesCS1B01G412000 chr1D 96.629 89 2 1 2340 2427 452693383 452693471 2.380000e-31 147.0
32 TraesCS1B01G412000 chr1D 77.972 286 28 14 2665 2946 468187551 468187805 2.380000e-31 147.0
33 TraesCS1B01G412000 chr1D 96.721 61 1 1 663 722 288789746 288789806 1.880000e-17 100.0
34 TraesCS1B01G412000 chr7A 87.387 333 28 4 2158 2486 487708661 487708339 1.300000e-98 370.0
35 TraesCS1B01G412000 chr7A 91.613 155 13 0 2804 2958 487708243 487708089 6.430000e-52 215.0
36 TraesCS1B01G412000 chr5D 86.842 304 34 4 2158 2456 302342135 302341833 4.730000e-88 335.0
37 TraesCS1B01G412000 chr6A 86.760 287 22 10 2158 2430 27076372 27076088 3.710000e-79 305.0
38 TraesCS1B01G412000 chr6A 87.342 158 17 1 2804 2958 27075979 27075822 8.430000e-41 178.0
39 TraesCS1B01G412000 chr2D 91.176 136 11 1 2823 2958 3000899 3000765 1.810000e-42 183.0
40 TraesCS1B01G412000 chr2D 92.391 92 6 1 2401 2491 3001087 3000996 2.390000e-26 130.0
41 TraesCS1B01G412000 chr2D 98.361 61 0 1 663 722 51074724 51074784 4.030000e-19 106.0
42 TraesCS1B01G412000 chr2D 77.049 122 26 2 1101 1221 528089310 528089430 5.290000e-08 69.4
43 TraesCS1B01G412000 chr2A 90.833 120 10 1 2373 2491 682971587 682971706 3.050000e-35 159.0
44 TraesCS1B01G412000 chr2A 81.395 129 18 6 1100 1225 672939450 672939575 1.880000e-17 100.0
45 TraesCS1B01G412000 chr5A 91.818 110 6 3 2383 2491 473304731 473304838 1.840000e-32 150.0
46 TraesCS1B01G412000 chr5B 81.119 143 13 6 2801 2943 36600192 36600320 5.220000e-18 102.0
47 TraesCS1B01G412000 chr3B 96.774 62 1 1 663 723 554804492 554804553 5.220000e-18 102.0
48 TraesCS1B01G412000 chr3B 94.118 68 0 4 663 729 765319609 765319545 1.880000e-17 100.0
49 TraesCS1B01G412000 chr3B 90.385 52 4 1 611 662 3878973 3878923 1.900000e-07 67.6
50 TraesCS1B01G412000 chr6D 96.721 61 1 1 663 722 193490981 193490921 1.880000e-17 100.0
51 TraesCS1B01G412000 chr3D 90.625 64 4 2 663 724 130950132 130950069 1.890000e-12 84.2
52 TraesCS1B01G412000 chr2B 87.324 71 7 2 612 681 34801771 34801840 2.450000e-11 80.5
53 TraesCS1B01G412000 chr2B 93.333 45 3 0 1100 1144 626056987 626057031 1.900000e-07 67.6
54 TraesCS1B01G412000 chr7D 95.652 46 2 0 616 661 178613837 178613882 1.140000e-09 75.0
55 TraesCS1B01G412000 chr7B 92.308 52 2 2 612 662 138666808 138666758 4.090000e-09 73.1
56 TraesCS1B01G412000 chr7B 89.130 46 4 1 647 692 596516422 596516378 4.120000e-04 56.5
57 TraesCS1B01G412000 chr3A 82.192 73 7 5 647 717 703960761 703960829 1.150000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G412000 chr1B 637947814 637950773 2959 False 2577.000000 4601 100.000000 1 2960 2 chr1B.!!$F2 2959
1 TraesCS1B01G412000 chr1A 554874905 554876533 1628 False 631.666667 1644 89.339333 399 2089 3 chr1A.!!$F1 1690
2 TraesCS1B01G412000 chr4A 683930014 683930887 873 False 874.000000 874 84.824000 1042 1918 1 chr4A.!!$F3 876
3 TraesCS1B01G412000 chr4B 601774888 601776022 1134 False 473.500000 848 86.680000 805 1918 2 chr4B.!!$F1 1113
4 TraesCS1B01G412000 chr4D 477150475 477151602 1127 False 471.550000 846 85.816000 805 1918 2 chr4D.!!$F2 1113
5 TraesCS1B01G412000 chr1D 468187208 468187805 597 False 279.000000 411 83.580500 2158 2946 2 chr1D.!!$F4 788
6 TraesCS1B01G412000 chr7A 487708089 487708661 572 True 292.500000 370 89.500000 2158 2958 2 chr7A.!!$R1 800
7 TraesCS1B01G412000 chr6A 27075822 27076372 550 True 241.500000 305 87.051000 2158 2958 2 chr6A.!!$R1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 0.027194 CGATCAGTCGCTTTGCCATG 59.973 55.0 0.00 0.0 41.49 3.66 F
496 503 0.027848 GTCGGTCCTTCTCGATCGTC 59.972 60.0 15.94 0.0 37.63 4.20 F
1441 1506 0.107459 GCTCATCACAAGGAGGGACC 60.107 60.0 0.00 0.0 33.88 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1486 0.107459 GTCCCTCCTTGTGATGAGCC 60.107 60.0 0.0 0.0 0.00 4.70 R
1820 1888 0.108804 ACGTTGAGCCATCACTACCG 60.109 55.0 0.0 0.0 34.35 4.02 R
2326 2487 1.228657 GGACGCCCTGTGAAGTTGAC 61.229 60.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 8.684386 TGTTCAACCTGTATCTAAAATGTTCA 57.316 30.769 0.00 0.00 0.00 3.18
74 75 9.126151 TGTTCAACCTGTATCTAAAATGTTCAA 57.874 29.630 0.00 0.00 0.00 2.69
75 76 9.394477 GTTCAACCTGTATCTAAAATGTTCAAC 57.606 33.333 0.00 0.00 0.00 3.18
76 77 7.802738 TCAACCTGTATCTAAAATGTTCAACG 58.197 34.615 0.00 0.00 0.00 4.10
77 78 7.442969 TCAACCTGTATCTAAAATGTTCAACGT 59.557 33.333 0.00 0.00 0.00 3.99
78 79 7.129109 ACCTGTATCTAAAATGTTCAACGTG 57.871 36.000 0.00 0.00 0.00 4.49
79 80 6.708949 ACCTGTATCTAAAATGTTCAACGTGT 59.291 34.615 0.00 0.00 0.00 4.49
80 81 7.015289 CCTGTATCTAAAATGTTCAACGTGTG 58.985 38.462 0.00 0.00 0.00 3.82
81 82 7.307751 CCTGTATCTAAAATGTTCAACGTGTGT 60.308 37.037 0.00 0.00 0.00 3.72
82 83 7.921787 TGTATCTAAAATGTTCAACGTGTGTT 58.078 30.769 0.00 0.00 39.43 3.32
83 84 8.399425 TGTATCTAAAATGTTCAACGTGTGTTT 58.601 29.630 0.00 0.00 35.72 2.83
84 85 9.228636 GTATCTAAAATGTTCAACGTGTGTTTT 57.771 29.630 0.00 0.00 35.72 2.43
86 87 9.790389 ATCTAAAATGTTCAACGTGTGTTTTAA 57.210 25.926 0.00 0.00 35.72 1.52
87 88 9.063739 TCTAAAATGTTCAACGTGTGTTTTAAC 57.936 29.630 0.00 0.00 35.72 2.01
88 89 7.639162 AAAATGTTCAACGTGTGTTTTAACA 57.361 28.000 0.00 7.75 41.72 2.41
89 90 7.639162 AAATGTTCAACGTGTGTTTTAACAA 57.361 28.000 0.00 0.00 41.25 2.83
90 91 6.862944 ATGTTCAACGTGTGTTTTAACAAG 57.137 33.333 0.00 0.00 41.25 3.16
91 92 5.759963 TGTTCAACGTGTGTTTTAACAAGT 58.240 33.333 0.00 0.00 43.30 3.16
92 93 6.895898 TGTTCAACGTGTGTTTTAACAAGTA 58.104 32.000 0.00 0.00 41.08 2.24
93 94 6.796072 TGTTCAACGTGTGTTTTAACAAGTAC 59.204 34.615 0.00 0.00 41.08 2.73
94 95 6.477669 TCAACGTGTGTTTTAACAAGTACA 57.522 33.333 0.00 0.00 41.08 2.90
95 96 6.305639 TCAACGTGTGTTTTAACAAGTACAC 58.694 36.000 0.00 0.00 41.08 2.90
96 97 5.859521 ACGTGTGTTTTAACAAGTACACA 57.140 34.783 0.00 0.00 46.04 3.72
112 113 9.872757 ACAAGTACACATGTATTTTTAAGAACG 57.127 29.630 0.00 0.00 29.61 3.95
116 117 9.866936 GTACACATGTATTTTTAAGAACGAACA 57.133 29.630 0.00 0.00 32.54 3.18
118 119 9.445786 ACACATGTATTTTTAAGAACGAACAAG 57.554 29.630 0.00 0.00 0.00 3.16
119 120 9.658475 CACATGTATTTTTAAGAACGAACAAGA 57.342 29.630 0.00 0.00 0.00 3.02
126 127 8.813643 TTTTTAAGAACGAACAAGAAAAACCA 57.186 26.923 0.00 0.00 0.00 3.67
127 128 8.813643 TTTTAAGAACGAACAAGAAAAACCAA 57.186 26.923 0.00 0.00 0.00 3.67
128 129 8.455598 TTTAAGAACGAACAAGAAAAACCAAG 57.544 30.769 0.00 0.00 0.00 3.61
129 130 5.890424 AGAACGAACAAGAAAAACCAAGA 57.110 34.783 0.00 0.00 0.00 3.02
130 131 5.880341 AGAACGAACAAGAAAAACCAAGAG 58.120 37.500 0.00 0.00 0.00 2.85
131 132 5.646360 AGAACGAACAAGAAAAACCAAGAGA 59.354 36.000 0.00 0.00 0.00 3.10
132 133 5.890424 ACGAACAAGAAAAACCAAGAGAA 57.110 34.783 0.00 0.00 0.00 2.87
133 134 6.262193 ACGAACAAGAAAAACCAAGAGAAA 57.738 33.333 0.00 0.00 0.00 2.52
134 135 6.683715 ACGAACAAGAAAAACCAAGAGAAAA 58.316 32.000 0.00 0.00 0.00 2.29
135 136 7.149307 ACGAACAAGAAAAACCAAGAGAAAAA 58.851 30.769 0.00 0.00 0.00 1.94
136 137 7.817478 ACGAACAAGAAAAACCAAGAGAAAAAT 59.183 29.630 0.00 0.00 0.00 1.82
137 138 8.321005 CGAACAAGAAAAACCAAGAGAAAAATC 58.679 33.333 0.00 0.00 0.00 2.17
138 139 7.755582 ACAAGAAAAACCAAGAGAAAAATCG 57.244 32.000 0.00 0.00 0.00 3.34
139 140 7.543756 ACAAGAAAAACCAAGAGAAAAATCGA 58.456 30.769 0.00 0.00 0.00 3.59
140 141 8.197439 ACAAGAAAAACCAAGAGAAAAATCGAT 58.803 29.630 0.00 0.00 0.00 3.59
141 142 8.482429 CAAGAAAAACCAAGAGAAAAATCGATG 58.518 33.333 0.00 0.00 0.00 3.84
142 143 7.940850 AGAAAAACCAAGAGAAAAATCGATGA 58.059 30.769 0.00 0.00 0.00 2.92
143 144 8.413229 AGAAAAACCAAGAGAAAAATCGATGAA 58.587 29.630 0.00 0.00 0.00 2.57
144 145 8.940768 AAAAACCAAGAGAAAAATCGATGAAA 57.059 26.923 0.00 0.00 0.00 2.69
145 146 8.940768 AAAACCAAGAGAAAAATCGATGAAAA 57.059 26.923 0.00 0.00 0.00 2.29
146 147 7.930513 AACCAAGAGAAAAATCGATGAAAAC 57.069 32.000 0.00 0.00 0.00 2.43
147 148 6.447162 ACCAAGAGAAAAATCGATGAAAACC 58.553 36.000 0.00 0.00 0.00 3.27
148 149 6.265422 ACCAAGAGAAAAATCGATGAAAACCT 59.735 34.615 0.00 0.00 0.00 3.50
149 150 7.447238 ACCAAGAGAAAAATCGATGAAAACCTA 59.553 33.333 0.00 0.00 0.00 3.08
150 151 8.462016 CCAAGAGAAAAATCGATGAAAACCTAT 58.538 33.333 0.00 0.00 0.00 2.57
154 155 9.884465 GAGAAAAATCGATGAAAACCTATATGG 57.116 33.333 0.00 0.00 42.93 2.74
155 156 9.627123 AGAAAAATCGATGAAAACCTATATGGA 57.373 29.630 0.00 0.00 39.71 3.41
156 157 9.884465 GAAAAATCGATGAAAACCTATATGGAG 57.116 33.333 0.00 0.00 39.71 3.86
157 158 9.627123 AAAAATCGATGAAAACCTATATGGAGA 57.373 29.630 0.00 0.00 39.71 3.71
158 159 9.627123 AAAATCGATGAAAACCTATATGGAGAA 57.373 29.630 0.00 0.00 39.71 2.87
159 160 9.627123 AAATCGATGAAAACCTATATGGAGAAA 57.373 29.630 0.00 0.00 39.71 2.52
160 161 9.627123 AATCGATGAAAACCTATATGGAGAAAA 57.373 29.630 0.00 0.00 39.71 2.29
161 162 8.433421 TCGATGAAAACCTATATGGAGAAAAC 57.567 34.615 0.00 0.00 39.71 2.43
162 163 8.044309 TCGATGAAAACCTATATGGAGAAAACA 58.956 33.333 0.00 0.00 39.71 2.83
163 164 8.338259 CGATGAAAACCTATATGGAGAAAACAG 58.662 37.037 0.00 0.00 39.71 3.16
164 165 9.396022 GATGAAAACCTATATGGAGAAAACAGA 57.604 33.333 0.00 0.00 39.71 3.41
165 166 8.792830 TGAAAACCTATATGGAGAAAACAGAG 57.207 34.615 0.00 0.00 39.71 3.35
166 167 8.602424 TGAAAACCTATATGGAGAAAACAGAGA 58.398 33.333 0.00 0.00 39.71 3.10
167 168 9.449719 GAAAACCTATATGGAGAAAACAGAGAA 57.550 33.333 0.00 0.00 39.71 2.87
168 169 9.807921 AAAACCTATATGGAGAAAACAGAGAAA 57.192 29.630 0.00 0.00 39.71 2.52
169 170 9.807921 AAACCTATATGGAGAAAACAGAGAAAA 57.192 29.630 0.00 0.00 39.71 2.29
170 171 9.807921 AACCTATATGGAGAAAACAGAGAAAAA 57.192 29.630 0.00 0.00 39.71 1.94
171 172 9.454859 ACCTATATGGAGAAAACAGAGAAAAAG 57.545 33.333 0.00 0.00 39.71 2.27
172 173 9.672673 CCTATATGGAGAAAACAGAGAAAAAGA 57.327 33.333 0.00 0.00 38.35 2.52
175 176 9.799106 ATATGGAGAAAACAGAGAAAAAGAAGA 57.201 29.630 0.00 0.00 0.00 2.87
176 177 7.938140 TGGAGAAAACAGAGAAAAAGAAGAA 57.062 32.000 0.00 0.00 0.00 2.52
177 178 8.348285 TGGAGAAAACAGAGAAAAAGAAGAAA 57.652 30.769 0.00 0.00 0.00 2.52
178 179 8.802267 TGGAGAAAACAGAGAAAAAGAAGAAAA 58.198 29.630 0.00 0.00 0.00 2.29
179 180 9.639601 GGAGAAAACAGAGAAAAAGAAGAAAAA 57.360 29.630 0.00 0.00 0.00 1.94
197 198 1.566404 AAAAAGTGAAAAAGGGCGCG 58.434 45.000 0.00 0.00 0.00 6.86
198 199 0.874175 AAAAGTGAAAAAGGGCGCGC 60.874 50.000 25.94 25.94 0.00 6.86
199 200 2.010582 AAAGTGAAAAAGGGCGCGCA 62.011 50.000 34.42 6.37 0.00 6.09
200 201 1.805428 AAGTGAAAAAGGGCGCGCAT 61.805 50.000 34.42 18.60 0.00 4.73
201 202 0.958382 AGTGAAAAAGGGCGCGCATA 60.958 50.000 34.42 6.08 0.00 3.14
202 203 0.109504 GTGAAAAAGGGCGCGCATAA 60.110 50.000 34.42 5.87 0.00 1.90
203 204 0.109504 TGAAAAAGGGCGCGCATAAC 60.110 50.000 34.42 19.20 0.00 1.89
204 205 0.800683 GAAAAAGGGCGCGCATAACC 60.801 55.000 34.42 24.29 0.00 2.85
205 206 1.248101 AAAAAGGGCGCGCATAACCT 61.248 50.000 34.42 26.24 34.04 3.50
206 207 0.393267 AAAAGGGCGCGCATAACCTA 60.393 50.000 34.42 0.00 31.88 3.08
207 208 0.179029 AAAGGGCGCGCATAACCTAT 60.179 50.000 34.42 16.31 31.88 2.57
208 209 0.602905 AAGGGCGCGCATAACCTATC 60.603 55.000 34.42 11.78 31.88 2.08
209 210 2.033194 GGGCGCGCATAACCTATCC 61.033 63.158 34.42 17.52 0.00 2.59
210 211 1.301401 GGCGCGCATAACCTATCCA 60.301 57.895 34.42 0.00 0.00 3.41
211 212 0.882927 GGCGCGCATAACCTATCCAA 60.883 55.000 34.42 0.00 0.00 3.53
212 213 0.941542 GCGCGCATAACCTATCCAAA 59.058 50.000 29.10 0.00 0.00 3.28
213 214 1.333791 GCGCGCATAACCTATCCAAAC 60.334 52.381 29.10 0.00 0.00 2.93
214 215 1.263217 CGCGCATAACCTATCCAAACC 59.737 52.381 8.75 0.00 0.00 3.27
215 216 1.607148 GCGCATAACCTATCCAAACCC 59.393 52.381 0.30 0.00 0.00 4.11
216 217 2.748465 GCGCATAACCTATCCAAACCCT 60.748 50.000 0.30 0.00 0.00 4.34
217 218 3.495453 GCGCATAACCTATCCAAACCCTA 60.495 47.826 0.30 0.00 0.00 3.53
218 219 4.062991 CGCATAACCTATCCAAACCCTAC 58.937 47.826 0.00 0.00 0.00 3.18
219 220 4.395625 GCATAACCTATCCAAACCCTACC 58.604 47.826 0.00 0.00 0.00 3.18
220 221 4.141344 GCATAACCTATCCAAACCCTACCA 60.141 45.833 0.00 0.00 0.00 3.25
221 222 5.632902 GCATAACCTATCCAAACCCTACCAA 60.633 44.000 0.00 0.00 0.00 3.67
222 223 6.428295 CATAACCTATCCAAACCCTACCAAA 58.572 40.000 0.00 0.00 0.00 3.28
223 224 5.342361 AACCTATCCAAACCCTACCAAAA 57.658 39.130 0.00 0.00 0.00 2.44
224 225 4.669700 ACCTATCCAAACCCTACCAAAAC 58.330 43.478 0.00 0.00 0.00 2.43
225 226 4.106663 ACCTATCCAAACCCTACCAAAACA 59.893 41.667 0.00 0.00 0.00 2.83
226 227 4.705023 CCTATCCAAACCCTACCAAAACAG 59.295 45.833 0.00 0.00 0.00 3.16
227 228 3.673543 TCCAAACCCTACCAAAACAGT 57.326 42.857 0.00 0.00 0.00 3.55
228 229 3.292460 TCCAAACCCTACCAAAACAGTG 58.708 45.455 0.00 0.00 0.00 3.66
229 230 2.364002 CCAAACCCTACCAAAACAGTGG 59.636 50.000 0.00 0.00 44.92 4.00
230 231 2.364002 CAAACCCTACCAAAACAGTGGG 59.636 50.000 0.00 0.00 43.56 4.61
233 234 2.668144 CCTACCAAAACAGTGGGGAA 57.332 50.000 0.00 0.00 43.56 3.97
234 235 2.514803 CCTACCAAAACAGTGGGGAAG 58.485 52.381 0.00 0.00 43.56 3.46
235 236 1.886542 CTACCAAAACAGTGGGGAAGC 59.113 52.381 0.00 0.00 43.56 3.86
236 237 0.032615 ACCAAAACAGTGGGGAAGCA 60.033 50.000 0.00 0.00 43.56 3.91
237 238 1.341080 CCAAAACAGTGGGGAAGCAT 58.659 50.000 0.00 0.00 34.77 3.79
238 239 1.693606 CCAAAACAGTGGGGAAGCATT 59.306 47.619 0.00 0.00 34.77 3.56
239 240 2.289010 CCAAAACAGTGGGGAAGCATTC 60.289 50.000 0.00 0.00 46.67 2.67
240 241 2.629617 CAAAACAGTGGGGAAGCATTCT 59.370 45.455 0.00 0.00 46.56 2.40
247 248 2.384203 GGGAAGCATTCTCGTTCCG 58.616 57.895 0.00 0.00 46.56 4.30
248 249 0.108329 GGGAAGCATTCTCGTTCCGA 60.108 55.000 0.00 0.00 46.56 4.55
249 250 1.674817 GGGAAGCATTCTCGTTCCGAA 60.675 52.381 0.00 0.00 46.56 4.30
250 251 2.073816 GGAAGCATTCTCGTTCCGAAA 58.926 47.619 0.00 0.00 46.56 3.46
251 252 2.159693 GGAAGCATTCTCGTTCCGAAAC 60.160 50.000 0.00 0.00 46.56 2.78
252 253 1.439679 AGCATTCTCGTTCCGAAACC 58.560 50.000 0.00 0.00 34.74 3.27
253 254 0.094730 GCATTCTCGTTCCGAAACCG 59.905 55.000 0.00 0.00 34.74 4.44
254 255 1.425412 CATTCTCGTTCCGAAACCGT 58.575 50.000 0.00 0.00 34.74 4.83
255 256 1.389106 CATTCTCGTTCCGAAACCGTC 59.611 52.381 0.00 0.00 34.74 4.79
263 264 3.620286 CGAAACCGTCGTCAGCAA 58.380 55.556 0.00 0.00 45.09 3.91
264 265 2.150424 CGAAACCGTCGTCAGCAAT 58.850 52.632 0.00 0.00 45.09 3.56
265 266 0.511221 CGAAACCGTCGTCAGCAATT 59.489 50.000 0.00 0.00 45.09 2.32
266 267 1.722464 CGAAACCGTCGTCAGCAATTA 59.278 47.619 0.00 0.00 45.09 1.40
267 268 2.347452 CGAAACCGTCGTCAGCAATTAT 59.653 45.455 0.00 0.00 45.09 1.28
268 269 3.181524 CGAAACCGTCGTCAGCAATTATT 60.182 43.478 0.00 0.00 45.09 1.40
269 270 3.740044 AACCGTCGTCAGCAATTATTG 57.260 42.857 0.00 0.00 0.00 1.90
270 271 2.006888 ACCGTCGTCAGCAATTATTGG 58.993 47.619 7.08 0.00 0.00 3.16
271 272 1.330521 CCGTCGTCAGCAATTATTGGG 59.669 52.381 7.08 0.00 0.00 4.12
272 273 1.268032 CGTCGTCAGCAATTATTGGGC 60.268 52.381 7.08 0.00 0.00 5.36
273 274 1.013596 TCGTCAGCAATTATTGGGCG 58.986 50.000 7.08 4.64 0.00 6.13
274 275 1.013596 CGTCAGCAATTATTGGGCGA 58.986 50.000 7.08 0.00 0.00 5.54
275 276 1.268032 CGTCAGCAATTATTGGGCGAC 60.268 52.381 7.08 5.09 0.00 5.19
287 288 2.747686 GGCGACCCACTTGAAGGA 59.252 61.111 0.00 0.00 0.00 3.36
288 289 1.299976 GGCGACCCACTTGAAGGAT 59.700 57.895 0.00 0.00 0.00 3.24
289 290 0.744771 GGCGACCCACTTGAAGGATC 60.745 60.000 0.00 0.00 0.00 3.36
290 291 0.250513 GCGACCCACTTGAAGGATCT 59.749 55.000 0.00 0.00 0.00 2.75
291 292 1.339151 GCGACCCACTTGAAGGATCTT 60.339 52.381 0.00 0.00 0.00 2.40
292 293 2.876079 GCGACCCACTTGAAGGATCTTT 60.876 50.000 0.00 0.00 0.00 2.52
293 294 2.744202 CGACCCACTTGAAGGATCTTTG 59.256 50.000 0.00 0.00 0.00 2.77
294 295 3.756117 GACCCACTTGAAGGATCTTTGT 58.244 45.455 0.00 0.00 0.00 2.83
295 296 4.562757 CGACCCACTTGAAGGATCTTTGTA 60.563 45.833 0.00 0.00 0.00 2.41
296 297 5.501156 GACCCACTTGAAGGATCTTTGTAT 58.499 41.667 0.00 0.00 0.00 2.29
297 298 5.256474 ACCCACTTGAAGGATCTTTGTATG 58.744 41.667 0.00 0.00 0.00 2.39
298 299 4.096984 CCCACTTGAAGGATCTTTGTATGC 59.903 45.833 0.00 0.00 0.00 3.14
299 300 4.201851 CCACTTGAAGGATCTTTGTATGCG 60.202 45.833 0.00 0.00 0.00 4.73
300 301 4.631377 CACTTGAAGGATCTTTGTATGCGA 59.369 41.667 0.00 0.00 0.00 5.10
301 302 4.872691 ACTTGAAGGATCTTTGTATGCGAG 59.127 41.667 0.00 0.00 0.00 5.03
302 303 3.198068 TGAAGGATCTTTGTATGCGAGC 58.802 45.455 0.00 0.00 0.00 5.03
303 304 1.858091 AGGATCTTTGTATGCGAGCG 58.142 50.000 0.00 0.00 0.00 5.03
304 305 1.137086 AGGATCTTTGTATGCGAGCGT 59.863 47.619 0.00 0.00 0.00 5.07
305 306 1.523095 GGATCTTTGTATGCGAGCGTC 59.477 52.381 0.00 0.00 0.00 5.19
306 307 2.193447 GATCTTTGTATGCGAGCGTCA 58.807 47.619 0.00 0.00 0.00 4.35
307 308 2.073117 TCTTTGTATGCGAGCGTCAA 57.927 45.000 0.00 0.00 0.00 3.18
308 309 2.616960 TCTTTGTATGCGAGCGTCAAT 58.383 42.857 0.00 0.00 0.00 2.57
309 310 3.000041 TCTTTGTATGCGAGCGTCAATT 59.000 40.909 0.00 0.00 0.00 2.32
310 311 2.804421 TTGTATGCGAGCGTCAATTG 57.196 45.000 0.00 0.00 0.00 2.32
311 312 1.720805 TGTATGCGAGCGTCAATTGT 58.279 45.000 5.13 0.00 0.00 2.71
312 313 2.073056 TGTATGCGAGCGTCAATTGTT 58.927 42.857 5.13 0.00 0.00 2.83
313 314 2.093625 TGTATGCGAGCGTCAATTGTTC 59.906 45.455 5.13 0.00 0.00 3.18
314 315 0.447801 ATGCGAGCGTCAATTGTTCC 59.552 50.000 5.13 0.00 0.00 3.62
315 316 1.134694 GCGAGCGTCAATTGTTCCC 59.865 57.895 5.13 0.00 0.00 3.97
316 317 1.419922 CGAGCGTCAATTGTTCCCG 59.580 57.895 5.13 5.43 0.00 5.14
317 318 1.794222 GAGCGTCAATTGTTCCCGG 59.206 57.895 5.13 0.00 0.00 5.73
318 319 0.953960 GAGCGTCAATTGTTCCCGGT 60.954 55.000 5.13 9.24 0.00 5.28
319 320 0.322322 AGCGTCAATTGTTCCCGGTA 59.678 50.000 5.13 0.00 0.00 4.02
320 321 0.725117 GCGTCAATTGTTCCCGGTAG 59.275 55.000 5.13 0.00 0.00 3.18
321 322 1.942586 GCGTCAATTGTTCCCGGTAGT 60.943 52.381 5.13 0.00 0.00 2.73
322 323 2.674747 GCGTCAATTGTTCCCGGTAGTA 60.675 50.000 5.13 0.00 0.00 1.82
323 324 3.587923 CGTCAATTGTTCCCGGTAGTAA 58.412 45.455 5.13 0.00 0.00 2.24
324 325 3.615496 CGTCAATTGTTCCCGGTAGTAAG 59.385 47.826 5.13 0.00 0.00 2.34
325 326 3.373130 GTCAATTGTTCCCGGTAGTAAGC 59.627 47.826 5.13 0.00 0.00 3.09
326 327 3.262405 TCAATTGTTCCCGGTAGTAAGCT 59.738 43.478 5.13 0.00 0.00 3.74
327 328 3.994931 ATTGTTCCCGGTAGTAAGCTT 57.005 42.857 3.48 3.48 0.00 3.74
328 329 3.323751 TTGTTCCCGGTAGTAAGCTTC 57.676 47.619 0.00 0.00 0.00 3.86
329 330 2.250031 TGTTCCCGGTAGTAAGCTTCA 58.750 47.619 0.00 0.00 0.00 3.02
330 331 2.232941 TGTTCCCGGTAGTAAGCTTCAG 59.767 50.000 0.00 0.00 0.00 3.02
331 332 2.226962 TCCCGGTAGTAAGCTTCAGT 57.773 50.000 0.00 0.00 0.00 3.41
332 333 1.822990 TCCCGGTAGTAAGCTTCAGTG 59.177 52.381 0.00 0.00 0.00 3.66
333 334 1.549170 CCCGGTAGTAAGCTTCAGTGT 59.451 52.381 0.00 0.00 0.00 3.55
334 335 2.607187 CCGGTAGTAAGCTTCAGTGTG 58.393 52.381 0.00 0.00 0.00 3.82
335 336 2.029290 CCGGTAGTAAGCTTCAGTGTGT 60.029 50.000 0.00 0.00 0.00 3.72
336 337 3.192001 CCGGTAGTAAGCTTCAGTGTGTA 59.808 47.826 0.00 0.00 0.00 2.90
337 338 4.321452 CCGGTAGTAAGCTTCAGTGTGTAA 60.321 45.833 0.00 0.00 0.00 2.41
338 339 4.857588 CGGTAGTAAGCTTCAGTGTGTAAG 59.142 45.833 0.00 0.00 0.00 2.34
339 340 5.564259 CGGTAGTAAGCTTCAGTGTGTAAGT 60.564 44.000 0.00 0.00 0.00 2.24
340 341 5.862860 GGTAGTAAGCTTCAGTGTGTAAGTC 59.137 44.000 0.00 0.00 0.00 3.01
341 342 4.547532 AGTAAGCTTCAGTGTGTAAGTCG 58.452 43.478 0.00 0.00 0.00 4.18
342 343 2.440539 AGCTTCAGTGTGTAAGTCGG 57.559 50.000 0.00 0.00 0.00 4.79
343 344 1.000955 AGCTTCAGTGTGTAAGTCGGG 59.999 52.381 0.00 0.00 0.00 5.14
344 345 1.429463 CTTCAGTGTGTAAGTCGGGC 58.571 55.000 0.00 0.00 0.00 6.13
345 346 0.319211 TTCAGTGTGTAAGTCGGGCG 60.319 55.000 0.00 0.00 0.00 6.13
346 347 1.174078 TCAGTGTGTAAGTCGGGCGA 61.174 55.000 0.00 0.00 0.00 5.54
347 348 1.007336 CAGTGTGTAAGTCGGGCGAC 61.007 60.000 0.00 0.00 44.86 5.19
360 361 3.855159 GGCGACCCATTGTAGTCTT 57.145 52.632 0.00 0.00 0.00 3.01
361 362 1.653151 GGCGACCCATTGTAGTCTTC 58.347 55.000 0.00 0.00 0.00 2.87
362 363 1.278238 GCGACCCATTGTAGTCTTCG 58.722 55.000 0.00 0.00 0.00 3.79
363 364 1.135199 GCGACCCATTGTAGTCTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
364 365 2.481449 GCGACCCATTGTAGTCTTCGAT 60.481 50.000 0.00 0.00 0.00 3.59
365 366 3.372954 CGACCCATTGTAGTCTTCGATC 58.627 50.000 0.00 0.00 0.00 3.69
366 367 3.181490 CGACCCATTGTAGTCTTCGATCA 60.181 47.826 0.00 0.00 0.00 2.92
367 368 4.363999 GACCCATTGTAGTCTTCGATCAG 58.636 47.826 0.00 0.00 0.00 2.90
368 369 3.769844 ACCCATTGTAGTCTTCGATCAGT 59.230 43.478 0.00 0.00 0.00 3.41
369 370 4.142138 ACCCATTGTAGTCTTCGATCAGTC 60.142 45.833 0.00 0.00 0.00 3.51
378 379 3.874873 CGATCAGTCGCTTTGCCA 58.125 55.556 0.00 0.00 41.49 4.92
379 380 2.387309 CGATCAGTCGCTTTGCCAT 58.613 52.632 0.00 0.00 41.49 4.40
380 381 0.027194 CGATCAGTCGCTTTGCCATG 59.973 55.000 0.00 0.00 41.49 3.66
381 382 1.372582 GATCAGTCGCTTTGCCATGA 58.627 50.000 0.00 0.00 0.00 3.07
382 383 1.945394 GATCAGTCGCTTTGCCATGAT 59.055 47.619 0.00 0.00 0.00 2.45
383 384 1.089112 TCAGTCGCTTTGCCATGATG 58.911 50.000 0.00 0.00 0.00 3.07
384 385 0.099968 CAGTCGCTTTGCCATGATGG 59.900 55.000 7.21 7.21 41.55 3.51
393 394 3.036577 CCATGATGGCACGCATCC 58.963 61.111 0.00 0.00 0.00 3.51
394 395 2.558286 CCATGATGGCACGCATCCC 61.558 63.158 0.00 0.00 0.00 3.85
395 396 2.203394 ATGATGGCACGCATCCCC 60.203 61.111 0.00 0.00 0.00 4.81
396 397 3.059326 ATGATGGCACGCATCCCCA 62.059 57.895 0.00 0.00 0.00 4.96
397 398 2.203394 GATGGCACGCATCCCCAT 60.203 61.111 0.00 0.00 41.83 4.00
409 410 0.680921 ATCCCCATGAACCAACGCTG 60.681 55.000 0.00 0.00 0.00 5.18
412 413 0.888736 CCCATGAACCAACGCTGACA 60.889 55.000 0.00 0.00 0.00 3.58
414 415 1.511850 CATGAACCAACGCTGACAGA 58.488 50.000 6.65 0.00 0.00 3.41
445 446 2.024305 AATCGTACGGCTCGCGAG 59.976 61.111 31.37 31.37 38.06 5.03
460 461 0.526524 GCGAGGGAACAGATCTCACG 60.527 60.000 0.00 0.00 44.34 4.35
475 476 1.583967 CACGCTGAGATCGGACGAC 60.584 63.158 0.00 0.00 0.00 4.34
496 503 0.027848 GTCGGTCCTTCTCGATCGTC 59.972 60.000 15.94 0.00 37.63 4.20
499 506 1.651730 GTCCTTCTCGATCGTCGCG 60.652 63.158 15.94 0.00 40.21 5.87
515 522 2.742372 CGTTCCCGGCCAGTTGAG 60.742 66.667 2.24 0.00 0.00 3.02
516 523 2.359975 GTTCCCGGCCAGTTGAGG 60.360 66.667 2.24 0.00 0.00 3.86
517 524 2.528127 TTCCCGGCCAGTTGAGGA 60.528 61.111 2.24 0.00 0.00 3.71
518 525 2.890766 TTCCCGGCCAGTTGAGGAC 61.891 63.158 2.24 0.00 0.00 3.85
552 560 2.354188 CGCGATCGCCGATTGGTA 60.354 61.111 32.63 0.00 41.76 3.25
553 561 1.947146 CGCGATCGCCGATTGGTAA 60.947 57.895 32.63 0.00 41.76 2.85
554 562 1.282248 CGCGATCGCCGATTGGTAAT 61.282 55.000 32.63 0.00 41.76 1.89
555 563 0.865769 GCGATCGCCGATTGGTAATT 59.134 50.000 29.48 0.00 41.76 1.40
556 564 1.263217 GCGATCGCCGATTGGTAATTT 59.737 47.619 29.48 0.00 41.76 1.82
557 565 2.661979 GCGATCGCCGATTGGTAATTTC 60.662 50.000 29.48 0.00 41.76 2.17
558 566 2.800544 CGATCGCCGATTGGTAATTTCT 59.199 45.455 0.26 0.00 41.76 2.52
559 567 3.985279 CGATCGCCGATTGGTAATTTCTA 59.015 43.478 0.26 0.00 41.76 2.10
560 568 4.446385 CGATCGCCGATTGGTAATTTCTAA 59.554 41.667 0.26 0.00 41.76 2.10
561 569 5.120208 CGATCGCCGATTGGTAATTTCTAAT 59.880 40.000 0.26 0.00 41.76 1.73
622 630 4.446994 AAACCAGCTAGTACGTACTTCC 57.553 45.455 31.58 21.69 37.73 3.46
623 631 3.362870 ACCAGCTAGTACGTACTTCCT 57.637 47.619 31.58 23.35 37.73 3.36
624 632 3.694926 ACCAGCTAGTACGTACTTCCTT 58.305 45.455 31.58 11.36 37.73 3.36
625 633 3.693578 ACCAGCTAGTACGTACTTCCTTC 59.306 47.826 31.58 16.20 37.73 3.46
626 634 3.242673 CCAGCTAGTACGTACTTCCTTCG 60.243 52.174 31.58 16.17 37.73 3.79
627 635 3.373439 CAGCTAGTACGTACTTCCTTCGT 59.627 47.826 31.58 9.16 40.78 3.85
628 636 4.006319 AGCTAGTACGTACTTCCTTCGTT 58.994 43.478 31.58 8.44 38.69 3.85
629 637 4.457257 AGCTAGTACGTACTTCCTTCGTTT 59.543 41.667 31.58 7.71 38.69 3.60
630 638 4.790651 GCTAGTACGTACTTCCTTCGTTTC 59.209 45.833 31.58 6.97 38.69 2.78
631 639 5.391416 GCTAGTACGTACTTCCTTCGTTTCT 60.391 44.000 31.58 7.00 38.69 2.52
632 640 6.183360 GCTAGTACGTACTTCCTTCGTTTCTA 60.183 42.308 31.58 9.40 38.69 2.10
633 641 6.560253 AGTACGTACTTCCTTCGTTTCTAA 57.440 37.500 22.45 0.00 38.69 2.10
634 642 6.970484 AGTACGTACTTCCTTCGTTTCTAAA 58.030 36.000 22.45 0.00 38.69 1.85
635 643 7.597386 AGTACGTACTTCCTTCGTTTCTAAAT 58.403 34.615 22.45 0.00 38.69 1.40
636 644 8.730680 AGTACGTACTTCCTTCGTTTCTAAATA 58.269 33.333 22.45 0.00 38.69 1.40
637 645 9.508567 GTACGTACTTCCTTCGTTTCTAAATAT 57.491 33.333 18.47 0.00 38.69 1.28
638 646 8.992835 ACGTACTTCCTTCGTTTCTAAATATT 57.007 30.769 0.00 0.00 34.07 1.28
639 647 9.428097 ACGTACTTCCTTCGTTTCTAAATATTT 57.572 29.630 5.89 5.89 34.07 1.40
697 705 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
704 712 7.482654 ACATCCGTATGTGATAGTTCATTTG 57.517 36.000 0.00 0.00 44.79 2.32
705 713 7.272244 ACATCCGTATGTGATAGTTCATTTGA 58.728 34.615 0.00 0.00 44.79 2.69
706 714 7.768582 ACATCCGTATGTGATAGTTCATTTGAA 59.231 33.333 0.00 0.00 44.79 2.69
707 715 8.777413 CATCCGTATGTGATAGTTCATTTGAAT 58.223 33.333 0.00 0.00 36.33 2.57
708 716 8.365399 TCCGTATGTGATAGTTCATTTGAATC 57.635 34.615 0.00 0.00 36.33 2.52
709 717 8.204160 TCCGTATGTGATAGTTCATTTGAATCT 58.796 33.333 0.00 0.00 36.33 2.40
710 718 8.830580 CCGTATGTGATAGTTCATTTGAATCTT 58.169 33.333 0.00 0.00 36.33 2.40
758 766 0.895530 TCTCCTCGGCAAAGGTACAG 59.104 55.000 0.00 0.00 37.69 2.74
818 828 2.181777 GTCCACTCGATCAGCGCA 59.818 61.111 11.47 0.00 40.61 6.09
917 977 3.382546 TCCCCGTCTATAAGAAAGAACCG 59.617 47.826 0.00 0.00 0.00 4.44
926 986 0.947244 AGAAAGAACCGCACAAGCTG 59.053 50.000 0.00 0.00 39.10 4.24
929 989 4.389576 GAACCGCACAAGCTGCCG 62.390 66.667 0.00 0.00 43.84 5.69
951 1011 0.884704 CCCGTCTGCCATTATTCCCG 60.885 60.000 0.00 0.00 0.00 5.14
956 1016 3.655481 GCCATTATTCCCGGCGAG 58.345 61.111 9.30 0.00 35.79 5.03
957 1017 1.227853 GCCATTATTCCCGGCGAGT 60.228 57.895 9.30 0.00 35.79 4.18
958 1018 1.228657 GCCATTATTCCCGGCGAGTC 61.229 60.000 9.30 0.00 35.79 3.36
959 1019 0.944311 CCATTATTCCCGGCGAGTCG 60.944 60.000 9.30 8.54 0.00 4.18
979 1044 1.135199 GGCGACGAAATACTGACTCCA 60.135 52.381 0.00 0.00 0.00 3.86
1012 1077 2.872388 CGCCATATGTCCGGCTCCT 61.872 63.158 0.00 0.00 46.62 3.69
1026 1091 3.077556 TCCTCCGAGCTGCCTTCC 61.078 66.667 0.00 0.00 0.00 3.46
1027 1092 3.393970 CCTCCGAGCTGCCTTCCA 61.394 66.667 0.00 0.00 0.00 3.53
1028 1093 2.739996 CCTCCGAGCTGCCTTCCAT 61.740 63.158 0.00 0.00 0.00 3.41
1031 1096 2.496341 CGAGCTGCCTTCCATCGA 59.504 61.111 0.00 0.00 35.47 3.59
1032 1097 1.068753 CGAGCTGCCTTCCATCGAT 59.931 57.895 0.00 0.00 35.47 3.59
1144 1209 2.656069 GGCTACTCCCGCACCAAGA 61.656 63.158 0.00 0.00 0.00 3.02
1154 1219 1.739562 GCACCAAGAGCCTCGTCAG 60.740 63.158 0.00 0.00 0.00 3.51
1191 1256 1.289066 CGAGACCTTCGCTGTTGGA 59.711 57.895 0.00 0.00 43.22 3.53
1227 1292 3.073101 AGGTACTTCCCGGACGGC 61.073 66.667 0.73 0.00 27.25 5.68
1243 1308 2.264794 GCCACTCGTCCGACCAAT 59.735 61.111 0.00 0.00 0.00 3.16
1279 1344 5.070981 TCCATCTATCTCCATCTTGTTCACC 59.929 44.000 0.00 0.00 0.00 4.02
1290 1355 3.104512 TCTTGTTCACCCCGATAGTGAT 58.895 45.455 3.49 0.00 43.46 3.06
1401 1466 0.597637 ACACCTTCTCGAGCAACACG 60.598 55.000 7.81 0.00 0.00 4.49
1419 1484 4.489771 GGACCATGGGGCTGTCCG 62.490 72.222 18.09 0.00 39.22 4.79
1420 1485 3.717294 GACCATGGGGCTGTCCGT 61.717 66.667 18.09 0.00 37.90 4.69
1421 1486 3.976701 GACCATGGGGCTGTCCGTG 62.977 68.421 18.09 0.00 42.08 4.94
1431 1496 1.293179 CTGTCCGTGGCTCATCACA 59.707 57.895 0.00 0.00 37.50 3.58
1436 1501 0.742281 CCGTGGCTCATCACAAGGAG 60.742 60.000 0.00 0.00 38.31 3.69
1441 1506 0.107459 GCTCATCACAAGGAGGGACC 60.107 60.000 0.00 0.00 33.88 4.46
1504 1569 4.160635 GCGAAATCACCGTGCCCG 62.161 66.667 0.00 0.00 0.00 6.13
1699 1764 2.125512 CGGAGCTTCTTGGACCGG 60.126 66.667 0.00 0.00 39.92 5.28
1700 1765 2.646175 CGGAGCTTCTTGGACCGGA 61.646 63.158 9.46 0.00 39.92 5.14
1701 1766 1.219393 GGAGCTTCTTGGACCGGAG 59.781 63.158 9.46 0.00 0.00 4.63
1723 1788 2.470938 GAAGGAGAAGGCCGGTGCTT 62.471 60.000 1.90 8.23 37.74 3.91
1727 1792 1.301677 GAGAAGGCCGGTGCTTCTTG 61.302 60.000 1.90 0.00 36.07 3.02
1742 1807 1.208358 CTTGTGTGCGCATCACTGG 59.792 57.895 29.71 21.93 45.81 4.00
1753 1818 0.738975 CATCACTGGCATGGAAGCTG 59.261 55.000 0.00 0.00 34.17 4.24
1761 1826 1.251251 GCATGGAAGCTGGAGTGTTT 58.749 50.000 0.00 0.00 0.00 2.83
1818 1883 0.539051 CAGACATGGAGGAGGGTGAC 59.461 60.000 0.00 0.00 0.00 3.67
1820 1888 2.187946 CATGGAGGAGGGTGACGC 59.812 66.667 0.00 0.00 0.00 5.19
1824 1892 2.753043 GAGGAGGGTGACGCGGTA 60.753 66.667 12.47 0.00 0.00 4.02
1858 1926 3.071459 CTGCTTGTAGCGGCGAACG 62.071 63.158 12.98 0.00 46.26 3.95
1920 1988 3.054875 AGCTCTGCAGATACATGGACAAA 60.055 43.478 18.63 0.00 0.00 2.83
1921 1989 3.311871 GCTCTGCAGATACATGGACAAAG 59.688 47.826 18.63 1.38 0.00 2.77
1922 1990 4.763073 CTCTGCAGATACATGGACAAAGA 58.237 43.478 18.63 0.00 0.00 2.52
1924 1992 3.261580 TGCAGATACATGGACAAAGACG 58.738 45.455 0.00 0.00 0.00 4.18
1925 1993 3.262420 GCAGATACATGGACAAAGACGT 58.738 45.455 0.00 0.00 0.00 4.34
1926 1994 3.684788 GCAGATACATGGACAAAGACGTT 59.315 43.478 0.00 0.00 0.00 3.99
1927 1995 4.436050 GCAGATACATGGACAAAGACGTTG 60.436 45.833 0.00 0.00 43.43 4.10
1928 1996 4.929211 CAGATACATGGACAAAGACGTTGA 59.071 41.667 8.17 0.00 39.87 3.18
1954 2038 0.934496 TCAACCGTTCGTGAGCTTTG 59.066 50.000 0.00 0.00 0.00 2.77
2018 2102 4.047059 TTCCGTCCACGTCGAGCC 62.047 66.667 0.00 0.00 37.74 4.70
2031 2115 3.057033 ACGTCGAGCCATGTAAAAGTAGT 60.057 43.478 0.00 0.00 0.00 2.73
2032 2116 4.156556 ACGTCGAGCCATGTAAAAGTAGTA 59.843 41.667 0.00 0.00 0.00 1.82
2033 2117 4.498323 CGTCGAGCCATGTAAAAGTAGTAC 59.502 45.833 0.00 0.00 0.00 2.73
2034 2118 5.404946 GTCGAGCCATGTAAAAGTAGTACA 58.595 41.667 2.52 0.00 35.98 2.90
2035 2119 5.865552 GTCGAGCCATGTAAAAGTAGTACAA 59.134 40.000 2.52 0.00 35.21 2.41
2036 2120 6.366877 GTCGAGCCATGTAAAAGTAGTACAAA 59.633 38.462 2.52 0.00 35.21 2.83
2037 2121 6.588756 TCGAGCCATGTAAAAGTAGTACAAAG 59.411 38.462 2.52 0.00 35.21 2.77
2038 2122 6.588756 CGAGCCATGTAAAAGTAGTACAAAGA 59.411 38.462 2.52 0.00 35.21 2.52
2040 2124 8.494016 AGCCATGTAAAAGTAGTACAAAGATC 57.506 34.615 2.52 0.00 35.21 2.75
2041 2125 7.277981 AGCCATGTAAAAGTAGTACAAAGATCG 59.722 37.037 2.52 0.00 35.21 3.69
2042 2126 7.399523 CCATGTAAAAGTAGTACAAAGATCGC 58.600 38.462 2.52 0.00 35.21 4.58
2080 2229 5.855395 GCGATTGCTCATTAATTTGAGATCC 59.145 40.000 10.69 0.00 44.88 3.36
2083 2232 6.704289 TTGCTCATTAATTTGAGATCCTGG 57.296 37.500 10.69 0.00 44.88 4.45
2089 2238 7.290061 TCATTAATTTGAGATCCTGGTTAGGG 58.710 38.462 0.00 0.00 44.70 3.53
2090 2239 6.901615 TTAATTTGAGATCCTGGTTAGGGA 57.098 37.500 0.00 0.00 44.70 4.20
2091 2240 5.379706 AATTTGAGATCCTGGTTAGGGAG 57.620 43.478 0.00 0.00 44.70 4.30
2092 2241 3.776731 TTGAGATCCTGGTTAGGGAGA 57.223 47.619 0.00 0.00 44.70 3.71
2093 2242 3.320610 TGAGATCCTGGTTAGGGAGAG 57.679 52.381 0.00 0.00 44.70 3.20
2094 2243 1.967779 GAGATCCTGGTTAGGGAGAGC 59.032 57.143 0.00 0.00 44.70 4.09
2095 2244 1.292242 AGATCCTGGTTAGGGAGAGCA 59.708 52.381 0.00 0.00 44.70 4.26
2096 2245 1.691434 GATCCTGGTTAGGGAGAGCAG 59.309 57.143 0.00 0.00 44.70 4.24
2098 2247 3.306902 CTGGTTAGGGAGAGCAGGA 57.693 57.895 0.00 0.00 38.59 3.86
2099 2248 1.573108 CTGGTTAGGGAGAGCAGGAA 58.427 55.000 0.00 0.00 38.59 3.36
2100 2249 2.122768 CTGGTTAGGGAGAGCAGGAAT 58.877 52.381 0.00 0.00 38.59 3.01
2101 2250 3.309296 CTGGTTAGGGAGAGCAGGAATA 58.691 50.000 0.00 0.00 38.59 1.75
2102 2251 3.906846 CTGGTTAGGGAGAGCAGGAATAT 59.093 47.826 0.00 0.00 38.59 1.28
2103 2252 3.904339 TGGTTAGGGAGAGCAGGAATATC 59.096 47.826 0.00 0.00 0.00 1.63
2104 2253 3.904339 GGTTAGGGAGAGCAGGAATATCA 59.096 47.826 0.00 0.00 0.00 2.15
2105 2254 4.348168 GGTTAGGGAGAGCAGGAATATCAA 59.652 45.833 0.00 0.00 0.00 2.57
2106 2255 5.163195 GGTTAGGGAGAGCAGGAATATCAAA 60.163 44.000 0.00 0.00 0.00 2.69
2107 2256 6.466470 GGTTAGGGAGAGCAGGAATATCAAAT 60.466 42.308 0.00 0.00 0.00 2.32
2108 2257 4.983053 AGGGAGAGCAGGAATATCAAATG 58.017 43.478 0.00 0.00 0.00 2.32
2109 2258 4.414846 AGGGAGAGCAGGAATATCAAATGT 59.585 41.667 0.00 0.00 0.00 2.71
2110 2259 5.103771 AGGGAGAGCAGGAATATCAAATGTT 60.104 40.000 0.00 0.00 0.00 2.71
2111 2260 5.240403 GGGAGAGCAGGAATATCAAATGTTC 59.760 44.000 0.00 0.00 0.00 3.18
2112 2261 5.049818 GGAGAGCAGGAATATCAAATGTTCG 60.050 44.000 0.00 0.00 31.94 3.95
2113 2262 4.274459 AGAGCAGGAATATCAAATGTTCGC 59.726 41.667 0.00 0.00 31.94 4.70
2114 2263 4.202441 AGCAGGAATATCAAATGTTCGCT 58.798 39.130 0.00 0.00 31.94 4.93
2115 2264 4.641989 AGCAGGAATATCAAATGTTCGCTT 59.358 37.500 0.00 0.00 31.94 4.68
2116 2265 5.126061 AGCAGGAATATCAAATGTTCGCTTT 59.874 36.000 0.00 0.00 31.94 3.51
2117 2266 6.318648 AGCAGGAATATCAAATGTTCGCTTTA 59.681 34.615 0.00 0.00 31.94 1.85
2118 2267 6.414987 GCAGGAATATCAAATGTTCGCTTTAC 59.585 38.462 0.00 0.00 31.94 2.01
2119 2268 7.679638 GCAGGAATATCAAATGTTCGCTTTACT 60.680 37.037 0.00 0.00 31.94 2.24
2120 2269 8.826710 CAGGAATATCAAATGTTCGCTTTACTA 58.173 33.333 0.00 0.00 31.94 1.82
2121 2270 9.046296 AGGAATATCAAATGTTCGCTTTACTAG 57.954 33.333 0.00 0.00 31.94 2.57
2122 2271 8.827677 GGAATATCAAATGTTCGCTTTACTAGT 58.172 33.333 0.00 0.00 31.94 2.57
2125 2274 7.667043 ATCAAATGTTCGCTTTACTAGTTCA 57.333 32.000 0.00 0.00 0.00 3.18
2126 2275 7.485418 TCAAATGTTCGCTTTACTAGTTCAA 57.515 32.000 0.00 0.00 0.00 2.69
2127 2276 7.349711 TCAAATGTTCGCTTTACTAGTTCAAC 58.650 34.615 0.00 0.00 0.00 3.18
2128 2277 6.854496 AATGTTCGCTTTACTAGTTCAACA 57.146 33.333 0.00 2.42 0.00 3.33
2129 2278 7.435068 AATGTTCGCTTTACTAGTTCAACAT 57.565 32.000 0.00 4.61 34.09 2.71
2130 2279 6.462073 TGTTCGCTTTACTAGTTCAACATC 57.538 37.500 0.00 0.00 0.00 3.06
2131 2280 5.986741 TGTTCGCTTTACTAGTTCAACATCA 59.013 36.000 0.00 0.00 0.00 3.07
2132 2281 6.649141 TGTTCGCTTTACTAGTTCAACATCAT 59.351 34.615 0.00 0.00 0.00 2.45
2133 2282 7.815549 TGTTCGCTTTACTAGTTCAACATCATA 59.184 33.333 0.00 0.00 0.00 2.15
2134 2283 8.818057 GTTCGCTTTACTAGTTCAACATCATAT 58.182 33.333 0.00 0.00 0.00 1.78
2135 2284 8.352752 TCGCTTTACTAGTTCAACATCATATG 57.647 34.615 0.00 0.00 0.00 1.78
2137 2286 9.244799 CGCTTTACTAGTTCAACATCATATGTA 57.755 33.333 0.00 0.00 44.07 2.29
2140 2289 9.542462 TTTACTAGTTCAACATCATATGTAGCC 57.458 33.333 0.00 0.00 44.07 3.93
2141 2290 7.124573 ACTAGTTCAACATCATATGTAGCCA 57.875 36.000 1.90 0.00 44.07 4.75
2142 2291 7.212976 ACTAGTTCAACATCATATGTAGCCAG 58.787 38.462 1.90 0.00 44.07 4.85
2143 2292 6.239217 AGTTCAACATCATATGTAGCCAGA 57.761 37.500 1.90 0.00 44.07 3.86
2144 2293 6.286758 AGTTCAACATCATATGTAGCCAGAG 58.713 40.000 1.90 0.00 44.07 3.35
2145 2294 5.876651 TCAACATCATATGTAGCCAGAGT 57.123 39.130 1.90 0.00 44.07 3.24
2146 2295 5.604565 TCAACATCATATGTAGCCAGAGTG 58.395 41.667 1.90 0.00 44.07 3.51
2147 2296 5.363580 TCAACATCATATGTAGCCAGAGTGA 59.636 40.000 1.90 0.00 44.07 3.41
2148 2297 6.042437 TCAACATCATATGTAGCCAGAGTGAT 59.958 38.462 1.90 0.00 44.07 3.06
2149 2298 6.430962 ACATCATATGTAGCCAGAGTGATT 57.569 37.500 1.90 0.00 42.78 2.57
2150 2299 6.228995 ACATCATATGTAGCCAGAGTGATTG 58.771 40.000 1.90 0.00 42.78 2.67
2151 2300 6.042437 ACATCATATGTAGCCAGAGTGATTGA 59.958 38.462 1.90 0.00 42.78 2.57
2152 2301 5.847304 TCATATGTAGCCAGAGTGATTGAC 58.153 41.667 1.90 0.00 0.00 3.18
2153 2302 5.363580 TCATATGTAGCCAGAGTGATTGACA 59.636 40.000 1.90 0.00 0.00 3.58
2154 2303 4.558226 ATGTAGCCAGAGTGATTGACAA 57.442 40.909 0.00 0.00 0.00 3.18
2155 2304 4.350368 TGTAGCCAGAGTGATTGACAAA 57.650 40.909 0.00 0.00 0.00 2.83
2156 2305 4.713553 TGTAGCCAGAGTGATTGACAAAA 58.286 39.130 0.00 0.00 0.00 2.44
2179 2328 1.203050 AGGGGTTTGTGTCCCATTGAG 60.203 52.381 3.37 0.00 46.26 3.02
2186 2335 1.915489 TGTGTCCCATTGAGCTACCAT 59.085 47.619 0.00 0.00 0.00 3.55
2249 2401 4.505808 TCGTGACAAACTACCACTTTCAA 58.494 39.130 0.00 0.00 0.00 2.69
2258 2410 9.131791 ACAAACTACCACTTTCAAATAATGTCT 57.868 29.630 0.00 0.00 0.00 3.41
2293 2454 2.919666 AATGTGTTTATGACAGGCGC 57.080 45.000 0.00 0.00 39.39 6.53
2310 2471 2.186903 CGGCCCATCTGTTAGCGT 59.813 61.111 0.00 0.00 0.00 5.07
2321 2482 2.735478 TTAGCGTTGACGTGGCGG 60.735 61.111 0.00 0.00 42.22 6.13
2784 2963 3.956317 CAGCAGCAGCAACACGCA 61.956 61.111 3.17 0.00 46.13 5.24
2785 2964 2.981909 AGCAGCAGCAACACGCAT 60.982 55.556 3.17 0.00 46.13 4.73
2786 2965 2.503375 GCAGCAGCAACACGCATC 60.503 61.111 0.00 0.00 46.13 3.91
2787 2966 2.202260 CAGCAGCAACACGCATCG 60.202 61.111 0.00 0.00 46.13 3.84
2788 2967 3.425713 AGCAGCAACACGCATCGG 61.426 61.111 0.00 0.00 46.13 4.18
2790 2969 3.725459 CAGCAACACGCATCGGCA 61.725 61.111 0.00 0.00 46.13 5.69
2791 2970 2.977456 AGCAACACGCATCGGCAA 60.977 55.556 0.00 0.00 46.13 4.52
2792 2971 2.502510 GCAACACGCATCGGCAAG 60.503 61.111 0.00 0.00 41.79 4.01
2793 2972 2.176546 CAACACGCATCGGCAAGG 59.823 61.111 0.00 0.00 41.24 3.61
2794 2973 3.055719 AACACGCATCGGCAAGGG 61.056 61.111 0.00 0.00 41.24 3.95
2837 3016 4.516135 CAGCAGCAGCACGCATCG 62.516 66.667 3.17 0.00 46.13 3.84
2949 3128 3.109547 CGTGCAAGGCGAGCGTAA 61.110 61.111 0.00 0.00 33.85 3.18
2958 3137 2.432456 CGAGCGTAACAGCAGGCA 60.432 61.111 0.00 0.00 40.15 4.75
2959 3138 2.447887 CGAGCGTAACAGCAGGCAG 61.448 63.158 0.00 0.00 40.15 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.295825 TGAACATTTTAGATACAGGTTGAACAT 57.704 29.630 0.00 0.00 0.00 2.71
48 49 8.684386 TGAACATTTTAGATACAGGTTGAACA 57.316 30.769 0.00 0.00 0.00 3.18
49 50 9.394477 GTTGAACATTTTAGATACAGGTTGAAC 57.606 33.333 0.00 0.00 0.00 3.18
50 51 8.286800 CGTTGAACATTTTAGATACAGGTTGAA 58.713 33.333 0.00 0.00 0.00 2.69
51 52 7.442969 ACGTTGAACATTTTAGATACAGGTTGA 59.557 33.333 0.00 0.00 0.00 3.18
52 53 7.533900 CACGTTGAACATTTTAGATACAGGTTG 59.466 37.037 0.00 0.00 0.00 3.77
53 54 7.227910 ACACGTTGAACATTTTAGATACAGGTT 59.772 33.333 0.00 0.00 0.00 3.50
54 55 6.708949 ACACGTTGAACATTTTAGATACAGGT 59.291 34.615 0.00 0.00 0.00 4.00
55 56 7.015289 CACACGTTGAACATTTTAGATACAGG 58.985 38.462 0.00 0.00 0.00 4.00
56 57 7.572759 ACACACGTTGAACATTTTAGATACAG 58.427 34.615 0.00 0.00 0.00 2.74
57 58 7.485418 ACACACGTTGAACATTTTAGATACA 57.515 32.000 0.00 0.00 0.00 2.29
58 59 8.776680 AAACACACGTTGAACATTTTAGATAC 57.223 30.769 0.00 0.00 34.86 2.24
60 61 9.790389 TTAAAACACACGTTGAACATTTTAGAT 57.210 25.926 0.00 0.00 34.86 1.98
61 62 9.063739 GTTAAAACACACGTTGAACATTTTAGA 57.936 29.630 0.00 0.00 34.86 2.10
62 63 8.851416 TGTTAAAACACACGTTGAACATTTTAG 58.149 29.630 0.00 0.00 37.09 1.85
63 64 8.738199 TGTTAAAACACACGTTGAACATTTTA 57.262 26.923 0.00 0.00 37.09 1.52
64 65 7.639162 TGTTAAAACACACGTTGAACATTTT 57.361 28.000 0.00 0.00 37.09 1.82
65 66 7.382759 ACTTGTTAAAACACACGTTGAACATTT 59.617 29.630 0.00 0.00 39.57 2.32
66 67 6.864165 ACTTGTTAAAACACACGTTGAACATT 59.136 30.769 0.00 0.00 39.57 2.71
67 68 6.383415 ACTTGTTAAAACACACGTTGAACAT 58.617 32.000 0.00 0.00 39.57 2.71
68 69 5.759963 ACTTGTTAAAACACACGTTGAACA 58.240 33.333 0.00 0.00 38.79 3.18
69 70 6.796072 TGTACTTGTTAAAACACACGTTGAAC 59.204 34.615 0.00 0.00 38.92 3.18
70 71 6.796072 GTGTACTTGTTAAAACACACGTTGAA 59.204 34.615 0.00 0.00 41.43 2.69
71 72 6.073385 TGTGTACTTGTTAAAACACACGTTGA 60.073 34.615 3.19 0.00 45.27 3.18
72 73 6.078479 TGTGTACTTGTTAAAACACACGTTG 58.922 36.000 3.19 0.00 45.27 4.10
73 74 6.238610 TGTGTACTTGTTAAAACACACGTT 57.761 33.333 3.19 0.00 45.27 3.99
74 75 5.859521 TGTGTACTTGTTAAAACACACGT 57.140 34.783 3.19 0.00 45.27 4.49
86 87 9.872757 CGTTCTTAAAAATACATGTGTACTTGT 57.127 29.630 9.11 8.35 37.83 3.16
90 91 9.866936 TGTTCGTTCTTAAAAATACATGTGTAC 57.133 29.630 9.11 0.00 32.72 2.90
92 93 9.445786 CTTGTTCGTTCTTAAAAATACATGTGT 57.554 29.630 9.11 0.00 0.00 3.72
93 94 9.658475 TCTTGTTCGTTCTTAAAAATACATGTG 57.342 29.630 9.11 0.00 0.00 3.21
100 101 9.425577 TGGTTTTTCTTGTTCGTTCTTAAAAAT 57.574 25.926 0.00 0.00 30.03 1.82
101 102 8.813643 TGGTTTTTCTTGTTCGTTCTTAAAAA 57.186 26.923 0.00 0.00 0.00 1.94
102 103 8.813643 TTGGTTTTTCTTGTTCGTTCTTAAAA 57.186 26.923 0.00 0.00 0.00 1.52
103 104 8.298140 TCTTGGTTTTTCTTGTTCGTTCTTAAA 58.702 29.630 0.00 0.00 0.00 1.52
104 105 7.818642 TCTTGGTTTTTCTTGTTCGTTCTTAA 58.181 30.769 0.00 0.00 0.00 1.85
105 106 7.334921 TCTCTTGGTTTTTCTTGTTCGTTCTTA 59.665 33.333 0.00 0.00 0.00 2.10
106 107 6.150474 TCTCTTGGTTTTTCTTGTTCGTTCTT 59.850 34.615 0.00 0.00 0.00 2.52
107 108 5.646360 TCTCTTGGTTTTTCTTGTTCGTTCT 59.354 36.000 0.00 0.00 0.00 3.01
108 109 5.875930 TCTCTTGGTTTTTCTTGTTCGTTC 58.124 37.500 0.00 0.00 0.00 3.95
109 110 5.890424 TCTCTTGGTTTTTCTTGTTCGTT 57.110 34.783 0.00 0.00 0.00 3.85
110 111 5.890424 TTCTCTTGGTTTTTCTTGTTCGT 57.110 34.783 0.00 0.00 0.00 3.85
111 112 7.575332 TTTTTCTCTTGGTTTTTCTTGTTCG 57.425 32.000 0.00 0.00 0.00 3.95
112 113 8.321005 CGATTTTTCTCTTGGTTTTTCTTGTTC 58.679 33.333 0.00 0.00 0.00 3.18
113 114 8.032451 TCGATTTTTCTCTTGGTTTTTCTTGTT 58.968 29.630 0.00 0.00 0.00 2.83
114 115 7.543756 TCGATTTTTCTCTTGGTTTTTCTTGT 58.456 30.769 0.00 0.00 0.00 3.16
115 116 7.985634 TCGATTTTTCTCTTGGTTTTTCTTG 57.014 32.000 0.00 0.00 0.00 3.02
116 117 8.413229 TCATCGATTTTTCTCTTGGTTTTTCTT 58.587 29.630 0.00 0.00 0.00 2.52
117 118 7.940850 TCATCGATTTTTCTCTTGGTTTTTCT 58.059 30.769 0.00 0.00 0.00 2.52
118 119 8.574196 TTCATCGATTTTTCTCTTGGTTTTTC 57.426 30.769 0.00 0.00 0.00 2.29
119 120 8.940768 TTTCATCGATTTTTCTCTTGGTTTTT 57.059 26.923 0.00 0.00 0.00 1.94
120 121 8.817100 GTTTTCATCGATTTTTCTCTTGGTTTT 58.183 29.630 0.00 0.00 0.00 2.43
121 122 7.438160 GGTTTTCATCGATTTTTCTCTTGGTTT 59.562 33.333 0.00 0.00 0.00 3.27
122 123 6.923508 GGTTTTCATCGATTTTTCTCTTGGTT 59.076 34.615 0.00 0.00 0.00 3.67
123 124 6.265422 AGGTTTTCATCGATTTTTCTCTTGGT 59.735 34.615 0.00 0.00 0.00 3.67
124 125 6.681777 AGGTTTTCATCGATTTTTCTCTTGG 58.318 36.000 0.00 0.00 0.00 3.61
128 129 9.884465 CCATATAGGTTTTCATCGATTTTTCTC 57.116 33.333 0.00 0.00 0.00 2.87
129 130 9.627123 TCCATATAGGTTTTCATCGATTTTTCT 57.373 29.630 0.00 0.00 39.02 2.52
130 131 9.884465 CTCCATATAGGTTTTCATCGATTTTTC 57.116 33.333 0.00 0.00 39.02 2.29
131 132 9.627123 TCTCCATATAGGTTTTCATCGATTTTT 57.373 29.630 0.00 0.00 39.02 1.94
132 133 9.627123 TTCTCCATATAGGTTTTCATCGATTTT 57.373 29.630 0.00 0.00 39.02 1.82
133 134 9.627123 TTTCTCCATATAGGTTTTCATCGATTT 57.373 29.630 0.00 0.00 39.02 2.17
134 135 9.627123 TTTTCTCCATATAGGTTTTCATCGATT 57.373 29.630 0.00 0.00 39.02 3.34
135 136 9.057089 GTTTTCTCCATATAGGTTTTCATCGAT 57.943 33.333 0.00 0.00 39.02 3.59
136 137 8.044309 TGTTTTCTCCATATAGGTTTTCATCGA 58.956 33.333 0.00 0.00 39.02 3.59
137 138 8.208718 TGTTTTCTCCATATAGGTTTTCATCG 57.791 34.615 0.00 0.00 39.02 3.84
138 139 9.396022 TCTGTTTTCTCCATATAGGTTTTCATC 57.604 33.333 0.00 0.00 39.02 2.92
139 140 9.401058 CTCTGTTTTCTCCATATAGGTTTTCAT 57.599 33.333 0.00 0.00 39.02 2.57
140 141 8.602424 TCTCTGTTTTCTCCATATAGGTTTTCA 58.398 33.333 0.00 0.00 39.02 2.69
141 142 9.449719 TTCTCTGTTTTCTCCATATAGGTTTTC 57.550 33.333 0.00 0.00 39.02 2.29
142 143 9.807921 TTTCTCTGTTTTCTCCATATAGGTTTT 57.192 29.630 0.00 0.00 39.02 2.43
143 144 9.807921 TTTTCTCTGTTTTCTCCATATAGGTTT 57.192 29.630 0.00 0.00 39.02 3.27
144 145 9.807921 TTTTTCTCTGTTTTCTCCATATAGGTT 57.192 29.630 0.00 0.00 39.02 3.50
145 146 9.454859 CTTTTTCTCTGTTTTCTCCATATAGGT 57.545 33.333 0.00 0.00 39.02 3.08
146 147 9.672673 TCTTTTTCTCTGTTTTCTCCATATAGG 57.327 33.333 0.00 0.00 39.47 2.57
149 150 9.799106 TCTTCTTTTTCTCTGTTTTCTCCATAT 57.201 29.630 0.00 0.00 0.00 1.78
150 151 9.627123 TTCTTCTTTTTCTCTGTTTTCTCCATA 57.373 29.630 0.00 0.00 0.00 2.74
151 152 8.525290 TTCTTCTTTTTCTCTGTTTTCTCCAT 57.475 30.769 0.00 0.00 0.00 3.41
152 153 7.938140 TTCTTCTTTTTCTCTGTTTTCTCCA 57.062 32.000 0.00 0.00 0.00 3.86
153 154 9.639601 TTTTTCTTCTTTTTCTCTGTTTTCTCC 57.360 29.630 0.00 0.00 0.00 3.71
178 179 1.566404 CGCGCCCTTTTTCACTTTTT 58.434 45.000 0.00 0.00 0.00 1.94
179 180 0.874175 GCGCGCCCTTTTTCACTTTT 60.874 50.000 23.24 0.00 0.00 2.27
180 181 1.299850 GCGCGCCCTTTTTCACTTT 60.300 52.632 23.24 0.00 0.00 2.66
181 182 1.805428 ATGCGCGCCCTTTTTCACTT 61.805 50.000 30.77 0.00 0.00 3.16
182 183 0.958382 TATGCGCGCCCTTTTTCACT 60.958 50.000 30.77 2.53 0.00 3.41
183 184 0.109504 TTATGCGCGCCCTTTTTCAC 60.110 50.000 30.77 0.00 0.00 3.18
184 185 0.109504 GTTATGCGCGCCCTTTTTCA 60.110 50.000 30.77 7.41 0.00 2.69
185 186 0.800683 GGTTATGCGCGCCCTTTTTC 60.801 55.000 30.77 11.98 0.00 2.29
186 187 1.214325 GGTTATGCGCGCCCTTTTT 59.786 52.632 30.77 8.76 0.00 1.94
187 188 0.393267 TAGGTTATGCGCGCCCTTTT 60.393 50.000 30.77 12.35 0.00 2.27
188 189 0.179029 ATAGGTTATGCGCGCCCTTT 60.179 50.000 30.77 19.04 0.00 3.11
189 190 0.602905 GATAGGTTATGCGCGCCCTT 60.603 55.000 30.77 16.09 0.00 3.95
190 191 1.004918 GATAGGTTATGCGCGCCCT 60.005 57.895 30.77 28.04 0.00 5.19
191 192 2.033194 GGATAGGTTATGCGCGCCC 61.033 63.158 30.77 22.35 0.00 6.13
192 193 0.882927 TTGGATAGGTTATGCGCGCC 60.883 55.000 30.77 13.14 0.00 6.53
193 194 0.941542 TTTGGATAGGTTATGCGCGC 59.058 50.000 27.26 27.26 0.00 6.86
194 195 1.263217 GGTTTGGATAGGTTATGCGCG 59.737 52.381 0.00 0.00 0.00 6.86
195 196 1.607148 GGGTTTGGATAGGTTATGCGC 59.393 52.381 0.00 0.00 0.00 6.09
196 197 3.208747 AGGGTTTGGATAGGTTATGCG 57.791 47.619 0.00 0.00 0.00 4.73
197 198 4.141344 TGGTAGGGTTTGGATAGGTTATGC 60.141 45.833 0.00 0.00 0.00 3.14
198 199 5.640158 TGGTAGGGTTTGGATAGGTTATG 57.360 43.478 0.00 0.00 0.00 1.90
199 200 6.661740 TTTGGTAGGGTTTGGATAGGTTAT 57.338 37.500 0.00 0.00 0.00 1.89
200 201 6.183361 TGTTTTGGTAGGGTTTGGATAGGTTA 60.183 38.462 0.00 0.00 0.00 2.85
201 202 5.081728 GTTTTGGTAGGGTTTGGATAGGTT 58.918 41.667 0.00 0.00 0.00 3.50
202 203 4.106663 TGTTTTGGTAGGGTTTGGATAGGT 59.893 41.667 0.00 0.00 0.00 3.08
203 204 4.668636 TGTTTTGGTAGGGTTTGGATAGG 58.331 43.478 0.00 0.00 0.00 2.57
204 205 5.183140 CACTGTTTTGGTAGGGTTTGGATAG 59.817 44.000 0.00 0.00 0.00 2.08
205 206 5.074115 CACTGTTTTGGTAGGGTTTGGATA 58.926 41.667 0.00 0.00 0.00 2.59
206 207 3.895041 CACTGTTTTGGTAGGGTTTGGAT 59.105 43.478 0.00 0.00 0.00 3.41
207 208 3.292460 CACTGTTTTGGTAGGGTTTGGA 58.708 45.455 0.00 0.00 0.00 3.53
208 209 2.364002 CCACTGTTTTGGTAGGGTTTGG 59.636 50.000 0.00 0.00 0.00 3.28
209 210 2.364002 CCCACTGTTTTGGTAGGGTTTG 59.636 50.000 0.00 0.00 34.44 2.93
210 211 2.673258 CCCACTGTTTTGGTAGGGTTT 58.327 47.619 0.00 0.00 34.44 3.27
211 212 1.133294 CCCCACTGTTTTGGTAGGGTT 60.133 52.381 0.00 0.00 34.44 4.11
212 213 0.481128 CCCCACTGTTTTGGTAGGGT 59.519 55.000 0.00 0.00 34.44 4.34
213 214 0.774908 TCCCCACTGTTTTGGTAGGG 59.225 55.000 0.00 0.00 37.05 3.53
214 215 2.514803 CTTCCCCACTGTTTTGGTAGG 58.485 52.381 0.00 0.00 34.44 3.18
215 216 1.886542 GCTTCCCCACTGTTTTGGTAG 59.113 52.381 0.00 0.00 34.44 3.18
216 217 1.215673 TGCTTCCCCACTGTTTTGGTA 59.784 47.619 0.00 0.00 34.44 3.25
217 218 0.032615 TGCTTCCCCACTGTTTTGGT 60.033 50.000 0.00 0.00 34.44 3.67
218 219 1.341080 ATGCTTCCCCACTGTTTTGG 58.659 50.000 0.00 0.00 36.26 3.28
219 220 2.629617 AGAATGCTTCCCCACTGTTTTG 59.370 45.455 0.00 0.00 0.00 2.44
220 221 2.893489 GAGAATGCTTCCCCACTGTTTT 59.107 45.455 0.00 0.00 0.00 2.43
221 222 2.519013 GAGAATGCTTCCCCACTGTTT 58.481 47.619 0.00 0.00 0.00 2.83
222 223 1.611673 CGAGAATGCTTCCCCACTGTT 60.612 52.381 0.00 0.00 0.00 3.16
223 224 0.036010 CGAGAATGCTTCCCCACTGT 60.036 55.000 0.00 0.00 0.00 3.55
224 225 0.036010 ACGAGAATGCTTCCCCACTG 60.036 55.000 0.00 0.00 0.00 3.66
225 226 0.693049 AACGAGAATGCTTCCCCACT 59.307 50.000 0.00 0.00 0.00 4.00
226 227 1.087501 GAACGAGAATGCTTCCCCAC 58.912 55.000 0.00 0.00 0.00 4.61
227 228 0.035439 GGAACGAGAATGCTTCCCCA 60.035 55.000 0.00 0.00 0.00 4.96
228 229 2.781911 GGAACGAGAATGCTTCCCC 58.218 57.895 0.00 0.00 0.00 4.81
247 248 4.088648 CAATAATTGCTGACGACGGTTTC 58.911 43.478 0.00 0.00 0.00 2.78
248 249 3.119990 CCAATAATTGCTGACGACGGTTT 60.120 43.478 0.00 0.00 0.00 3.27
249 250 2.418628 CCAATAATTGCTGACGACGGTT 59.581 45.455 0.00 0.00 0.00 4.44
250 251 2.006888 CCAATAATTGCTGACGACGGT 58.993 47.619 0.00 0.00 0.00 4.83
251 252 1.330521 CCCAATAATTGCTGACGACGG 59.669 52.381 0.00 0.00 0.00 4.79
252 253 1.268032 GCCCAATAATTGCTGACGACG 60.268 52.381 0.00 0.00 0.00 5.12
253 254 1.268032 CGCCCAATAATTGCTGACGAC 60.268 52.381 0.00 0.00 0.00 4.34
254 255 1.013596 CGCCCAATAATTGCTGACGA 58.986 50.000 0.00 0.00 0.00 4.20
255 256 1.013596 TCGCCCAATAATTGCTGACG 58.986 50.000 0.00 0.00 0.00 4.35
256 257 1.065551 GGTCGCCCAATAATTGCTGAC 59.934 52.381 0.00 0.00 0.00 3.51
257 258 1.388547 GGTCGCCCAATAATTGCTGA 58.611 50.000 0.00 0.00 0.00 4.26
258 259 0.385390 GGGTCGCCCAATAATTGCTG 59.615 55.000 9.72 0.00 44.65 4.41
259 260 2.807247 GGGTCGCCCAATAATTGCT 58.193 52.632 9.72 0.00 44.65 3.91
269 270 2.198304 ATCCTTCAAGTGGGTCGCCC 62.198 60.000 7.87 7.87 45.71 6.13
270 271 0.744771 GATCCTTCAAGTGGGTCGCC 60.745 60.000 0.00 0.00 0.00 5.54
271 272 0.250513 AGATCCTTCAAGTGGGTCGC 59.749 55.000 0.00 0.00 39.57 5.19
272 273 2.744202 CAAAGATCCTTCAAGTGGGTCG 59.256 50.000 0.00 0.00 39.57 4.79
273 274 3.756117 ACAAAGATCCTTCAAGTGGGTC 58.244 45.455 0.00 0.00 35.03 4.46
274 275 3.884037 ACAAAGATCCTTCAAGTGGGT 57.116 42.857 0.00 0.00 0.00 4.51
275 276 4.096984 GCATACAAAGATCCTTCAAGTGGG 59.903 45.833 0.00 0.00 0.00 4.61
276 277 4.201851 CGCATACAAAGATCCTTCAAGTGG 60.202 45.833 0.00 0.00 0.00 4.00
277 278 4.631377 TCGCATACAAAGATCCTTCAAGTG 59.369 41.667 0.00 0.00 0.00 3.16
278 279 4.832248 TCGCATACAAAGATCCTTCAAGT 58.168 39.130 0.00 0.00 0.00 3.16
279 280 4.260538 GCTCGCATACAAAGATCCTTCAAG 60.261 45.833 0.00 0.00 0.00 3.02
280 281 3.623060 GCTCGCATACAAAGATCCTTCAA 59.377 43.478 0.00 0.00 0.00 2.69
281 282 3.198068 GCTCGCATACAAAGATCCTTCA 58.802 45.455 0.00 0.00 0.00 3.02
282 283 2.219674 CGCTCGCATACAAAGATCCTTC 59.780 50.000 0.00 0.00 0.00 3.46
283 284 2.205074 CGCTCGCATACAAAGATCCTT 58.795 47.619 0.00 0.00 0.00 3.36
284 285 1.137086 ACGCTCGCATACAAAGATCCT 59.863 47.619 0.00 0.00 0.00 3.24
285 286 1.523095 GACGCTCGCATACAAAGATCC 59.477 52.381 0.00 0.00 0.00 3.36
286 287 2.193447 TGACGCTCGCATACAAAGATC 58.807 47.619 0.00 0.00 0.00 2.75
287 288 2.293677 TGACGCTCGCATACAAAGAT 57.706 45.000 0.00 0.00 0.00 2.40
288 289 2.073117 TTGACGCTCGCATACAAAGA 57.927 45.000 0.00 0.00 0.00 2.52
289 290 3.093574 CAATTGACGCTCGCATACAAAG 58.906 45.455 0.00 0.00 0.00 2.77
290 291 2.482336 ACAATTGACGCTCGCATACAAA 59.518 40.909 13.59 0.00 0.00 2.83
291 292 2.073056 ACAATTGACGCTCGCATACAA 58.927 42.857 13.59 0.00 0.00 2.41
292 293 1.720805 ACAATTGACGCTCGCATACA 58.279 45.000 13.59 0.00 0.00 2.29
293 294 2.536928 GGAACAATTGACGCTCGCATAC 60.537 50.000 13.59 0.00 0.00 2.39
294 295 1.663643 GGAACAATTGACGCTCGCATA 59.336 47.619 13.59 0.00 0.00 3.14
295 296 0.447801 GGAACAATTGACGCTCGCAT 59.552 50.000 13.59 0.00 0.00 4.73
296 297 1.573829 GGGAACAATTGACGCTCGCA 61.574 55.000 13.59 0.00 0.00 5.10
297 298 1.134694 GGGAACAATTGACGCTCGC 59.865 57.895 13.59 7.53 0.00 5.03
298 299 1.419922 CGGGAACAATTGACGCTCG 59.580 57.895 13.59 8.52 0.00 5.03
299 300 0.953960 ACCGGGAACAATTGACGCTC 60.954 55.000 13.59 3.01 0.00 5.03
300 301 0.322322 TACCGGGAACAATTGACGCT 59.678 50.000 13.59 1.63 0.00 5.07
301 302 0.725117 CTACCGGGAACAATTGACGC 59.275 55.000 13.59 12.41 0.00 5.19
302 303 2.088950 ACTACCGGGAACAATTGACG 57.911 50.000 13.59 10.52 0.00 4.35
303 304 3.373130 GCTTACTACCGGGAACAATTGAC 59.627 47.826 13.59 5.68 0.00 3.18
304 305 3.262405 AGCTTACTACCGGGAACAATTGA 59.738 43.478 13.59 0.00 0.00 2.57
305 306 3.606687 AGCTTACTACCGGGAACAATTG 58.393 45.455 6.32 3.24 0.00 2.32
306 307 3.994931 AGCTTACTACCGGGAACAATT 57.005 42.857 6.32 0.00 0.00 2.32
307 308 3.262405 TGAAGCTTACTACCGGGAACAAT 59.738 43.478 6.32 0.00 0.00 2.71
308 309 2.633967 TGAAGCTTACTACCGGGAACAA 59.366 45.455 6.32 0.00 0.00 2.83
309 310 2.232941 CTGAAGCTTACTACCGGGAACA 59.767 50.000 6.32 0.00 0.00 3.18
310 311 2.233186 ACTGAAGCTTACTACCGGGAAC 59.767 50.000 6.32 0.00 0.00 3.62
311 312 2.232941 CACTGAAGCTTACTACCGGGAA 59.767 50.000 6.32 0.00 0.00 3.97
312 313 1.822990 CACTGAAGCTTACTACCGGGA 59.177 52.381 6.32 0.00 0.00 5.14
313 314 1.549170 ACACTGAAGCTTACTACCGGG 59.451 52.381 6.32 0.00 0.00 5.73
314 315 2.029290 ACACACTGAAGCTTACTACCGG 60.029 50.000 0.00 0.00 0.00 5.28
315 316 3.299340 ACACACTGAAGCTTACTACCG 57.701 47.619 0.00 0.00 0.00 4.02
316 317 5.780984 ACTTACACACTGAAGCTTACTACC 58.219 41.667 0.00 0.00 0.00 3.18
317 318 5.568296 CGACTTACACACTGAAGCTTACTAC 59.432 44.000 0.00 0.00 0.00 2.73
318 319 5.335426 CCGACTTACACACTGAAGCTTACTA 60.335 44.000 0.00 0.00 0.00 1.82
319 320 4.547532 CGACTTACACACTGAAGCTTACT 58.452 43.478 0.00 0.00 0.00 2.24
320 321 3.673809 CCGACTTACACACTGAAGCTTAC 59.326 47.826 0.00 0.00 0.00 2.34
321 322 3.305813 CCCGACTTACACACTGAAGCTTA 60.306 47.826 0.00 0.00 0.00 3.09
322 323 2.548067 CCCGACTTACACACTGAAGCTT 60.548 50.000 0.00 0.00 0.00 3.74
323 324 1.000955 CCCGACTTACACACTGAAGCT 59.999 52.381 0.00 0.00 0.00 3.74
324 325 1.429463 CCCGACTTACACACTGAAGC 58.571 55.000 0.00 0.00 0.00 3.86
325 326 1.429463 GCCCGACTTACACACTGAAG 58.571 55.000 0.00 0.00 0.00 3.02
326 327 0.319211 CGCCCGACTTACACACTGAA 60.319 55.000 0.00 0.00 0.00 3.02
327 328 1.174078 TCGCCCGACTTACACACTGA 61.174 55.000 0.00 0.00 0.00 3.41
328 329 1.007336 GTCGCCCGACTTACACACTG 61.007 60.000 13.10 0.00 41.57 3.66
329 330 1.288127 GTCGCCCGACTTACACACT 59.712 57.895 13.10 0.00 41.57 3.55
330 331 1.735559 GGTCGCCCGACTTACACAC 60.736 63.158 18.78 0.00 44.04 3.82
331 332 2.652530 GGTCGCCCGACTTACACA 59.347 61.111 18.78 0.00 44.04 3.72
332 333 2.125793 GGGTCGCCCGACTTACAC 60.126 66.667 18.78 3.57 44.04 2.90
341 342 0.252197 AAGACTACAATGGGTCGCCC 59.748 55.000 7.87 7.87 45.71 6.13
342 343 1.653151 GAAGACTACAATGGGTCGCC 58.347 55.000 3.78 0.00 37.52 5.54
343 344 1.135199 TCGAAGACTACAATGGGTCGC 60.135 52.381 0.00 1.01 37.52 5.19
344 345 2.933495 TCGAAGACTACAATGGGTCG 57.067 50.000 0.00 0.00 37.52 4.79
345 346 4.142138 ACTGATCGAAGACTACAATGGGTC 60.142 45.833 0.00 1.51 42.51 4.46
346 347 3.769844 ACTGATCGAAGACTACAATGGGT 59.230 43.478 0.00 0.00 42.51 4.51
347 348 4.363999 GACTGATCGAAGACTACAATGGG 58.636 47.826 0.00 0.00 42.51 4.00
362 363 1.372582 TCATGGCAAAGCGACTGATC 58.627 50.000 0.00 0.00 0.00 2.92
363 364 1.674441 CATCATGGCAAAGCGACTGAT 59.326 47.619 0.00 0.00 0.00 2.90
364 365 1.089112 CATCATGGCAAAGCGACTGA 58.911 50.000 0.00 0.00 0.00 3.41
365 366 0.099968 CCATCATGGCAAAGCGACTG 59.900 55.000 0.00 0.00 0.00 3.51
366 367 2.485677 CCATCATGGCAAAGCGACT 58.514 52.632 0.00 0.00 0.00 4.18
381 382 2.520020 CATGGGGATGCGTGCCAT 60.520 61.111 19.12 7.15 37.63 4.40
382 383 3.279504 TTCATGGGGATGCGTGCCA 62.280 57.895 19.12 4.96 37.63 4.92
383 384 2.440065 TTCATGGGGATGCGTGCC 60.440 61.111 8.18 8.18 34.56 5.01
384 385 2.774799 GGTTCATGGGGATGCGTGC 61.775 63.158 0.00 0.00 0.00 5.34
385 386 0.964860 TTGGTTCATGGGGATGCGTG 60.965 55.000 0.00 0.00 0.00 5.34
386 387 0.965363 GTTGGTTCATGGGGATGCGT 60.965 55.000 0.00 0.00 0.00 5.24
387 388 1.809207 GTTGGTTCATGGGGATGCG 59.191 57.895 0.00 0.00 0.00 4.73
388 389 1.809207 CGTTGGTTCATGGGGATGC 59.191 57.895 0.00 0.00 0.00 3.91
389 390 0.680921 AGCGTTGGTTCATGGGGATG 60.681 55.000 0.00 0.00 0.00 3.51
390 391 0.680921 CAGCGTTGGTTCATGGGGAT 60.681 55.000 0.00 0.00 0.00 3.85
391 392 1.303236 CAGCGTTGGTTCATGGGGA 60.303 57.895 0.00 0.00 0.00 4.81
392 393 1.303236 TCAGCGTTGGTTCATGGGG 60.303 57.895 0.00 0.00 0.00 4.96
393 394 0.888736 TGTCAGCGTTGGTTCATGGG 60.889 55.000 0.00 0.00 0.00 4.00
394 395 0.518636 CTGTCAGCGTTGGTTCATGG 59.481 55.000 0.00 0.00 0.00 3.66
395 396 1.511850 TCTGTCAGCGTTGGTTCATG 58.488 50.000 0.00 0.00 0.00 3.07
396 397 1.873591 GTTCTGTCAGCGTTGGTTCAT 59.126 47.619 0.00 0.00 0.00 2.57
397 398 1.295792 GTTCTGTCAGCGTTGGTTCA 58.704 50.000 0.00 0.00 0.00 3.18
409 410 2.440539 TGCTTCTTCCTCGTTCTGTC 57.559 50.000 0.00 0.00 0.00 3.51
412 413 2.028930 ACGATTGCTTCTTCCTCGTTCT 60.029 45.455 0.00 0.00 39.32 3.01
414 415 2.457366 ACGATTGCTTCTTCCTCGTT 57.543 45.000 0.00 0.00 39.32 3.85
433 434 3.818787 GTTCCCTCGCGAGCCGTA 61.819 66.667 30.49 13.09 38.35 4.02
445 446 0.532573 TCAGCGTGAGATCTGTTCCC 59.467 55.000 0.00 0.00 0.00 3.97
475 476 1.355916 GATCGAGAAGGACCGACGG 59.644 63.158 13.61 13.61 37.64 4.79
499 506 2.359975 CCTCAACTGGCCGGGAAC 60.360 66.667 18.00 0.00 0.00 3.62
511 518 1.000506 GCGTGTACCTCAAGTCCTCAA 59.999 52.381 0.00 0.00 0.00 3.02
512 519 0.601558 GCGTGTACCTCAAGTCCTCA 59.398 55.000 0.00 0.00 0.00 3.86
513 520 0.889306 AGCGTGTACCTCAAGTCCTC 59.111 55.000 0.00 0.00 0.00 3.71
514 521 0.889306 GAGCGTGTACCTCAAGTCCT 59.111 55.000 0.00 0.00 0.00 3.85
515 522 0.108756 GGAGCGTGTACCTCAAGTCC 60.109 60.000 0.00 0.00 0.00 3.85
516 523 0.108756 GGGAGCGTGTACCTCAAGTC 60.109 60.000 0.00 0.00 0.00 3.01
517 524 1.874345 CGGGAGCGTGTACCTCAAGT 61.874 60.000 0.00 0.00 0.00 3.16
518 525 1.153823 CGGGAGCGTGTACCTCAAG 60.154 63.158 0.00 0.00 0.00 3.02
540 547 6.491394 CAAATTAGAAATTACCAATCGGCGA 58.509 36.000 13.87 13.87 34.57 5.54
541 548 5.173131 GCAAATTAGAAATTACCAATCGGCG 59.827 40.000 0.00 0.00 34.57 6.46
605 613 3.373439 ACGAAGGAAGTACGTACTAGCTG 59.627 47.826 27.59 17.06 38.47 4.24
606 614 3.604582 ACGAAGGAAGTACGTACTAGCT 58.395 45.455 27.59 13.27 38.47 3.32
607 615 4.348198 AACGAAGGAAGTACGTACTAGC 57.652 45.455 27.59 21.07 39.31 3.42
608 616 6.175712 AGAAACGAAGGAAGTACGTACTAG 57.824 41.667 27.59 16.24 39.31 2.57
609 617 7.667043 TTAGAAACGAAGGAAGTACGTACTA 57.333 36.000 27.59 5.31 39.31 1.82
610 618 6.560253 TTAGAAACGAAGGAAGTACGTACT 57.440 37.500 22.45 22.45 39.31 2.73
611 619 7.803079 ATTTAGAAACGAAGGAAGTACGTAC 57.197 36.000 18.10 18.10 39.31 3.67
613 621 8.992835 AATATTTAGAAACGAAGGAAGTACGT 57.007 30.769 0.00 0.00 41.97 3.57
671 679 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
678 686 9.208022 CAAATGAACTATCACATACGGATGTAT 57.792 33.333 14.23 10.02 44.82 2.29
679 687 8.417884 TCAAATGAACTATCACATACGGATGTA 58.582 33.333 14.23 2.61 44.82 2.29
681 689 7.713764 TCAAATGAACTATCACATACGGATG 57.286 36.000 5.94 5.94 38.69 3.51
682 690 8.908786 ATTCAAATGAACTATCACATACGGAT 57.091 30.769 0.00 0.00 38.69 4.18
683 691 8.204160 AGATTCAAATGAACTATCACATACGGA 58.796 33.333 0.00 0.00 38.69 4.69
684 692 8.370493 AGATTCAAATGAACTATCACATACGG 57.630 34.615 0.00 0.00 38.69 4.02
711 719 8.871862 GCATGCATGAATGTTATTGTCTTTTTA 58.128 29.630 30.64 0.00 0.00 1.52
712 720 7.412129 CGCATGCATGAATGTTATTGTCTTTTT 60.412 33.333 30.64 0.00 0.00 1.94
713 721 6.035220 CGCATGCATGAATGTTATTGTCTTTT 59.965 34.615 30.64 0.00 0.00 2.27
714 722 5.517411 CGCATGCATGAATGTTATTGTCTTT 59.483 36.000 30.64 0.00 0.00 2.52
715 723 5.038683 CGCATGCATGAATGTTATTGTCTT 58.961 37.500 30.64 0.00 0.00 3.01
716 724 4.096833 ACGCATGCATGAATGTTATTGTCT 59.903 37.500 30.64 0.00 0.00 3.41
717 725 4.353737 ACGCATGCATGAATGTTATTGTC 58.646 39.130 30.64 6.66 0.00 3.18
718 726 4.096833 AGACGCATGCATGAATGTTATTGT 59.903 37.500 30.64 12.18 0.00 2.71
719 727 4.603985 AGACGCATGCATGAATGTTATTG 58.396 39.130 30.64 9.30 0.00 1.90
720 728 4.261322 GGAGACGCATGCATGAATGTTATT 60.261 41.667 30.64 13.23 0.00 1.40
721 729 3.251729 GGAGACGCATGCATGAATGTTAT 59.748 43.478 30.64 15.72 0.00 1.89
722 730 2.613595 GGAGACGCATGCATGAATGTTA 59.386 45.455 30.64 0.00 0.00 2.41
723 731 1.402968 GGAGACGCATGCATGAATGTT 59.597 47.619 30.64 10.59 0.00 2.71
779 787 3.520862 CATGCATCGGGTGGGTGC 61.521 66.667 0.00 0.00 39.26 5.01
780 788 3.520862 GCATGCATCGGGTGGGTG 61.521 66.667 14.21 0.00 0.00 4.61
929 989 0.663153 GAATAATGGCAGACGGGTGC 59.337 55.000 2.77 2.77 43.19 5.01
951 1011 2.924922 TATTTCGTCGCCGACTCGCC 62.925 60.000 16.07 0.00 44.13 5.54
956 1016 0.912528 GTCAGTATTTCGTCGCCGAC 59.087 55.000 7.29 7.29 44.13 4.79
957 1017 0.806868 AGTCAGTATTTCGTCGCCGA 59.193 50.000 0.00 0.00 42.41 5.54
958 1018 1.189403 GAGTCAGTATTTCGTCGCCG 58.811 55.000 0.00 0.00 0.00 6.46
959 1019 1.135199 TGGAGTCAGTATTTCGTCGCC 60.135 52.381 0.00 0.00 0.00 5.54
960 1020 2.273370 TGGAGTCAGTATTTCGTCGC 57.727 50.000 0.00 0.00 0.00 5.19
961 1021 4.673441 AGAATGGAGTCAGTATTTCGTCG 58.327 43.478 0.00 0.00 0.00 5.12
962 1022 6.036191 GGAAAGAATGGAGTCAGTATTTCGTC 59.964 42.308 7.49 0.00 44.83 4.20
963 1023 5.875359 GGAAAGAATGGAGTCAGTATTTCGT 59.125 40.000 7.49 0.00 44.83 3.85
973 1033 3.437049 CGAAACCTGGAAAGAATGGAGTC 59.563 47.826 0.00 0.00 0.00 3.36
975 1035 2.162408 GCGAAACCTGGAAAGAATGGAG 59.838 50.000 0.00 0.00 0.00 3.86
979 1044 2.286365 TGGCGAAACCTGGAAAGAAT 57.714 45.000 0.00 0.00 40.22 2.40
1012 1077 2.903357 GATGGAAGGCAGCTCGGA 59.097 61.111 0.00 0.00 0.00 4.55
1015 1080 2.614581 CATCGATGGAAGGCAGCTC 58.385 57.895 17.96 0.00 0.00 4.09
1016 1081 4.872357 CATCGATGGAAGGCAGCT 57.128 55.556 17.96 0.00 0.00 4.24
1159 1224 2.504244 CTCGGACGTGACGCCTTC 60.504 66.667 4.25 0.00 0.00 3.46
1184 1249 2.434884 AGCGATGGCGTCCAACAG 60.435 61.111 0.14 0.00 46.35 3.16
1191 1256 2.108514 CATGAACCAGCGATGGCGT 61.109 57.895 21.97 8.13 46.35 5.68
1227 1292 0.458543 CAGATTGGTCGGACGAGTGG 60.459 60.000 1.43 0.00 0.00 4.00
1401 1466 4.129148 GGACAGCCCCATGGTCCC 62.129 72.222 11.73 0.00 44.21 4.46
1419 1484 0.393537 CCCTCCTTGTGATGAGCCAC 60.394 60.000 0.00 0.00 37.55 5.01
1420 1485 0.547471 TCCCTCCTTGTGATGAGCCA 60.547 55.000 0.00 0.00 0.00 4.75
1421 1486 0.107459 GTCCCTCCTTGTGATGAGCC 60.107 60.000 0.00 0.00 0.00 4.70
1431 1496 0.423544 ATTCCTCCAGGTCCCTCCTT 59.576 55.000 0.00 0.00 45.67 3.36
1436 1501 1.272554 AACCGATTCCTCCAGGTCCC 61.273 60.000 0.00 0.00 35.68 4.46
1441 1506 2.500098 TGAGGTAAACCGATTCCTCCAG 59.500 50.000 7.46 0.00 43.91 3.86
1504 1569 1.443828 GCTCCGTGAAGATCTCCCC 59.556 63.158 0.00 0.00 0.00 4.81
1699 1764 0.176910 CCGGCCTTCTCCTTCTTCTC 59.823 60.000 0.00 0.00 0.00 2.87
1700 1765 0.545548 ACCGGCCTTCTCCTTCTTCT 60.546 55.000 0.00 0.00 0.00 2.85
1701 1766 0.391793 CACCGGCCTTCTCCTTCTTC 60.392 60.000 0.00 0.00 0.00 2.87
1742 1807 1.251251 AAACACTCCAGCTTCCATGC 58.749 50.000 0.00 0.00 0.00 4.06
1753 1818 3.010420 GGAGCATGGTCTTAAACACTCC 58.990 50.000 23.24 8.65 36.04 3.85
1761 1826 6.889177 TGTAAATGAAATGGAGCATGGTCTTA 59.111 34.615 23.24 13.69 0.00 2.10
1809 1874 3.066814 ACTACCGCGTCACCCTCC 61.067 66.667 4.92 0.00 0.00 4.30
1818 1883 1.153647 TTGAGCCATCACTACCGCG 60.154 57.895 0.00 0.00 34.35 6.46
1820 1888 0.108804 ACGTTGAGCCATCACTACCG 60.109 55.000 0.00 0.00 34.35 4.02
1824 1892 0.671781 GCAGACGTTGAGCCATCACT 60.672 55.000 0.00 0.00 34.35 3.41
1858 1926 8.874816 CAACTTTAGCCTCTCAAGTTTATACTC 58.125 37.037 4.05 0.00 36.25 2.59
1866 1934 3.778954 AGCAACTTTAGCCTCTCAAGT 57.221 42.857 0.00 0.00 30.38 3.16
1869 1937 2.554032 GCAAAGCAACTTTAGCCTCTCA 59.446 45.455 0.00 0.00 31.96 3.27
1909 1977 3.064207 GCTCAACGTCTTTGTCCATGTA 58.936 45.455 0.00 0.00 36.49 2.29
1920 1988 2.086054 GTTGATGAGGCTCAACGTCT 57.914 50.000 22.84 3.91 43.86 4.18
1925 1993 1.808411 GAACGGTTGATGAGGCTCAA 58.192 50.000 22.84 2.42 32.84 3.02
1926 1994 0.389817 CGAACGGTTGATGAGGCTCA 60.390 55.000 21.19 21.19 0.00 4.26
1927 1995 0.389948 ACGAACGGTTGATGAGGCTC 60.390 55.000 7.79 7.79 0.00 4.70
1928 1996 0.670546 CACGAACGGTTGATGAGGCT 60.671 55.000 0.00 0.00 0.00 4.58
1954 2038 6.610741 ACAGAAGAAGAACACTCATCAAAC 57.389 37.500 0.00 0.00 0.00 2.93
2018 2102 7.064134 TGGCGATCTTTGTACTACTTTTACATG 59.936 37.037 0.00 0.00 29.60 3.21
2031 2115 2.105821 CCCCCTTATGGCGATCTTTGTA 59.894 50.000 0.00 0.00 0.00 2.41
2032 2116 1.133792 CCCCCTTATGGCGATCTTTGT 60.134 52.381 0.00 0.00 0.00 2.83
2033 2117 1.609208 CCCCCTTATGGCGATCTTTG 58.391 55.000 0.00 0.00 0.00 2.77
2034 2118 0.178990 GCCCCCTTATGGCGATCTTT 60.179 55.000 0.00 0.00 39.48 2.52
2035 2119 1.456287 GCCCCCTTATGGCGATCTT 59.544 57.895 0.00 0.00 39.48 2.40
2036 2120 3.161557 GCCCCCTTATGGCGATCT 58.838 61.111 0.00 0.00 39.48 2.75
2042 2126 2.958578 AATCGCGTGCCCCCTTATGG 62.959 60.000 5.77 0.00 0.00 2.74
2080 2229 1.573108 TTCCTGCTCTCCCTAACCAG 58.427 55.000 0.00 0.00 0.00 4.00
2083 2232 5.552870 TTGATATTCCTGCTCTCCCTAAC 57.447 43.478 0.00 0.00 0.00 2.34
2089 2238 5.559799 GCGAACATTTGATATTCCTGCTCTC 60.560 44.000 0.00 0.00 0.00 3.20
2090 2239 4.274459 GCGAACATTTGATATTCCTGCTCT 59.726 41.667 0.00 0.00 0.00 4.09
2091 2240 4.274459 AGCGAACATTTGATATTCCTGCTC 59.726 41.667 0.00 0.00 0.00 4.26
2092 2241 4.202441 AGCGAACATTTGATATTCCTGCT 58.798 39.130 0.00 0.00 0.00 4.24
2093 2242 4.558538 AGCGAACATTTGATATTCCTGC 57.441 40.909 0.00 0.00 0.00 4.85
2094 2243 7.697691 AGTAAAGCGAACATTTGATATTCCTG 58.302 34.615 0.00 0.00 0.00 3.86
2095 2244 7.865706 AGTAAAGCGAACATTTGATATTCCT 57.134 32.000 0.00 0.00 0.00 3.36
2096 2245 8.827677 ACTAGTAAAGCGAACATTTGATATTCC 58.172 33.333 0.00 0.00 0.00 3.01
2099 2248 9.378551 TGAACTAGTAAAGCGAACATTTGATAT 57.621 29.630 0.00 0.00 0.00 1.63
2100 2249 8.766000 TGAACTAGTAAAGCGAACATTTGATA 57.234 30.769 0.00 0.00 0.00 2.15
2101 2250 7.667043 TGAACTAGTAAAGCGAACATTTGAT 57.333 32.000 0.00 0.00 0.00 2.57
2102 2251 7.011576 TGTTGAACTAGTAAAGCGAACATTTGA 59.988 33.333 0.00 0.00 0.00 2.69
2103 2252 7.129622 TGTTGAACTAGTAAAGCGAACATTTG 58.870 34.615 0.00 0.00 0.00 2.32
2104 2253 7.254227 TGTTGAACTAGTAAAGCGAACATTT 57.746 32.000 0.00 0.00 0.00 2.32
2105 2254 6.854496 TGTTGAACTAGTAAAGCGAACATT 57.146 33.333 0.00 0.00 0.00 2.71
2106 2255 6.649141 TGATGTTGAACTAGTAAAGCGAACAT 59.351 34.615 0.00 5.00 35.69 2.71
2107 2256 5.986741 TGATGTTGAACTAGTAAAGCGAACA 59.013 36.000 0.00 0.20 0.00 3.18
2108 2257 6.462073 TGATGTTGAACTAGTAAAGCGAAC 57.538 37.500 0.00 0.00 0.00 3.95
2109 2258 8.817100 CATATGATGTTGAACTAGTAAAGCGAA 58.183 33.333 0.00 0.00 0.00 4.70
2110 2259 7.979537 ACATATGATGTTGAACTAGTAAAGCGA 59.020 33.333 10.38 0.00 41.63 4.93
2111 2260 8.131455 ACATATGATGTTGAACTAGTAAAGCG 57.869 34.615 10.38 0.00 41.63 4.68
2114 2263 9.542462 GGCTACATATGATGTTGAACTAGTAAA 57.458 33.333 10.38 0.00 41.63 2.01
2115 2264 8.700973 TGGCTACATATGATGTTGAACTAGTAA 58.299 33.333 10.38 0.00 41.63 2.24
2116 2265 8.245195 TGGCTACATATGATGTTGAACTAGTA 57.755 34.615 10.38 0.00 41.63 1.82
2117 2266 7.069950 TCTGGCTACATATGATGTTGAACTAGT 59.930 37.037 10.38 0.00 41.63 2.57
2118 2267 7.436933 TCTGGCTACATATGATGTTGAACTAG 58.563 38.462 10.38 0.00 41.63 2.57
2119 2268 7.069950 ACTCTGGCTACATATGATGTTGAACTA 59.930 37.037 10.38 0.00 41.63 2.24
2120 2269 6.126940 ACTCTGGCTACATATGATGTTGAACT 60.127 38.462 10.38 0.00 41.63 3.01
2121 2270 6.018425 CACTCTGGCTACATATGATGTTGAAC 60.018 42.308 10.38 0.00 41.63 3.18
2122 2271 6.051074 CACTCTGGCTACATATGATGTTGAA 58.949 40.000 10.38 0.00 41.63 2.69
2123 2272 5.363580 TCACTCTGGCTACATATGATGTTGA 59.636 40.000 10.38 0.00 41.63 3.18
2124 2273 5.604565 TCACTCTGGCTACATATGATGTTG 58.395 41.667 10.38 0.00 41.63 3.33
2125 2274 5.876651 TCACTCTGGCTACATATGATGTT 57.123 39.130 10.38 0.00 41.63 2.71
2126 2275 6.042437 TCAATCACTCTGGCTACATATGATGT 59.958 38.462 10.38 0.00 46.92 3.06
2127 2276 6.368243 GTCAATCACTCTGGCTACATATGATG 59.632 42.308 10.38 2.59 0.00 3.07
2128 2277 6.042437 TGTCAATCACTCTGGCTACATATGAT 59.958 38.462 10.38 0.00 0.00 2.45
2129 2278 5.363580 TGTCAATCACTCTGGCTACATATGA 59.636 40.000 10.38 0.00 0.00 2.15
2130 2279 5.604565 TGTCAATCACTCTGGCTACATATG 58.395 41.667 0.00 0.00 0.00 1.78
2131 2280 5.876651 TGTCAATCACTCTGGCTACATAT 57.123 39.130 0.00 0.00 0.00 1.78
2132 2281 5.675684 TTGTCAATCACTCTGGCTACATA 57.324 39.130 0.00 0.00 0.00 2.29
2133 2282 4.558226 TTGTCAATCACTCTGGCTACAT 57.442 40.909 0.00 0.00 0.00 2.29
2134 2283 4.350368 TTTGTCAATCACTCTGGCTACA 57.650 40.909 0.00 0.00 0.00 2.74
2135 2284 5.886960 ATTTTGTCAATCACTCTGGCTAC 57.113 39.130 0.00 0.00 0.00 3.58
2136 2285 6.599244 CCTAATTTTGTCAATCACTCTGGCTA 59.401 38.462 0.00 0.00 0.00 3.93
2137 2286 5.416952 CCTAATTTTGTCAATCACTCTGGCT 59.583 40.000 0.00 0.00 0.00 4.75
2138 2287 5.393461 CCCTAATTTTGTCAATCACTCTGGC 60.393 44.000 0.00 0.00 0.00 4.85
2139 2288 5.126061 CCCCTAATTTTGTCAATCACTCTGG 59.874 44.000 0.00 0.00 0.00 3.86
2140 2289 5.711976 ACCCCTAATTTTGTCAATCACTCTG 59.288 40.000 0.00 0.00 0.00 3.35
2141 2290 5.892348 ACCCCTAATTTTGTCAATCACTCT 58.108 37.500 0.00 0.00 0.00 3.24
2142 2291 6.590234 AACCCCTAATTTTGTCAATCACTC 57.410 37.500 0.00 0.00 0.00 3.51
2143 2292 6.326323 ACAAACCCCTAATTTTGTCAATCACT 59.674 34.615 0.00 0.00 41.09 3.41
2144 2293 6.423604 CACAAACCCCTAATTTTGTCAATCAC 59.576 38.462 0.00 0.00 42.67 3.06
2145 2294 6.098982 ACACAAACCCCTAATTTTGTCAATCA 59.901 34.615 0.00 0.00 42.67 2.57
2146 2295 6.521162 ACACAAACCCCTAATTTTGTCAATC 58.479 36.000 0.00 0.00 42.67 2.67
2147 2296 6.463755 GGACACAAACCCCTAATTTTGTCAAT 60.464 38.462 7.00 0.00 42.67 2.57
2148 2297 5.163395 GGACACAAACCCCTAATTTTGTCAA 60.163 40.000 7.00 0.00 42.67 3.18
2149 2298 4.342665 GGACACAAACCCCTAATTTTGTCA 59.657 41.667 7.00 0.00 42.67 3.58
2150 2299 4.262292 GGGACACAAACCCCTAATTTTGTC 60.262 45.833 0.00 0.00 42.67 3.18
2151 2300 3.644265 GGGACACAAACCCCTAATTTTGT 59.356 43.478 0.00 0.00 44.84 2.83
2152 2301 3.643792 TGGGACACAAACCCCTAATTTTG 59.356 43.478 0.00 0.00 46.21 2.44
2153 2302 3.930035 TGGGACACAAACCCCTAATTTT 58.070 40.909 0.00 0.00 46.21 1.82
2154 2303 3.621682 TGGGACACAAACCCCTAATTT 57.378 42.857 0.00 0.00 46.21 1.82
2204 2353 8.974408 ACGAAATTAGAAAATTTTGGTAGTTGC 58.026 29.630 8.47 1.44 45.25 4.17
2265 2426 8.647226 GCCTGTCATAAACACATTAAAATTGTC 58.353 33.333 0.00 0.00 33.24 3.18
2273 2434 2.350192 CGCGCCTGTCATAAACACATTA 59.650 45.455 0.00 0.00 33.24 1.90
2276 2437 1.295357 CCGCGCCTGTCATAAACACA 61.295 55.000 0.00 0.00 33.24 3.72
2293 2454 1.449601 AACGCTAACAGATGGGCCG 60.450 57.895 0.00 0.00 0.00 6.13
2310 2471 2.515057 ACTTTGCCGCCACGTCAA 60.515 55.556 0.00 0.00 0.00 3.18
2321 2482 1.269257 GCCCTGTGAAGTTGACTTTGC 60.269 52.381 0.00 0.00 36.11 3.68
2326 2487 1.228657 GGACGCCCTGTGAAGTTGAC 61.229 60.000 0.00 0.00 0.00 3.18
2441 2612 3.646715 GCTGCTACCCACCACCCA 61.647 66.667 0.00 0.00 0.00 4.51
2819 2998 4.831307 GATGCGTGCTGCTGCTGC 62.831 66.667 22.51 22.51 46.63 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.