Multiple sequence alignment - TraesCS1B01G411600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G411600 chr1B 100.000 3374 0 0 1 3374 637814906 637818279 0.000000e+00 6231.0
1 TraesCS1B01G411600 chr1B 80.326 1413 221 38 907 2289 663611571 663610186 0.000000e+00 1016.0
2 TraesCS1B01G411600 chr1B 79.454 1538 233 57 907 2396 637525290 637523788 0.000000e+00 1013.0
3 TraesCS1B01G411600 chr1B 77.575 1534 279 46 907 2406 637621646 637623148 0.000000e+00 867.0
4 TraesCS1B01G411600 chr1B 90.424 637 35 8 2739 3374 637822511 637823122 0.000000e+00 815.0
5 TraesCS1B01G411600 chr1B 93.913 115 7 0 17 131 481851141 481851027 1.240000e-39 174.0
6 TraesCS1B01G411600 chr1B 92.373 118 9 0 17 134 662907682 662907799 5.790000e-38 169.0
7 TraesCS1B01G411600 chr1B 92.174 115 9 0 17 131 30452671 30452785 2.690000e-36 163.0
8 TraesCS1B01G411600 chr1B 91.525 118 10 0 17 134 662905633 662905750 2.690000e-36 163.0
9 TraesCS1B01G411600 chr1B 90.099 101 9 1 443 542 663612055 663611955 2.730000e-26 130.0
10 TraesCS1B01G411600 chr1B 89.024 82 6 3 176 255 538865213 538865293 7.700000e-17 99.0
11 TraesCS1B01G411600 chr1D 92.696 2355 143 15 1036 3374 462714370 462716711 0.000000e+00 3369.0
12 TraesCS1B01G411600 chr1D 78.366 1530 273 38 907 2406 462487633 462489134 0.000000e+00 939.0
13 TraesCS1B01G411600 chr1D 76.942 1210 235 32 1097 2289 462718974 462717792 0.000000e+00 649.0
14 TraesCS1B01G411600 chr1D 79.279 222 43 3 1060 1278 462736663 462736442 5.830000e-33 152.0
15 TraesCS1B01G411600 chr1D 87.805 82 6 3 209 286 483867630 483867711 3.580000e-15 93.5
16 TraesCS1B01G411600 chr1D 90.141 71 5 2 443 511 462395471 462395541 1.290000e-14 91.6
17 TraesCS1B01G411600 chr1A 78.622 1539 244 60 907 2396 554221622 554223124 0.000000e+00 941.0
18 TraesCS1B01G411600 chr7D 92.174 115 9 0 17 131 49387596 49387710 2.690000e-36 163.0
19 TraesCS1B01G411600 chr3A 92.174 115 9 0 17 131 742240966 742240852 2.690000e-36 163.0
20 TraesCS1B01G411600 chr4B 91.453 117 10 0 17 133 653314259 653314375 9.690000e-36 161.0
21 TraesCS1B01G411600 chr6D 91.304 115 10 0 17 131 17446479 17446593 1.250000e-34 158.0
22 TraesCS1B01G411600 chr3D 91.304 115 10 0 17 131 613581909 613581795 1.250000e-34 158.0
23 TraesCS1B01G411600 chr4A 93.421 76 4 1 185 259 714331653 714331578 9.900000e-21 111.0
24 TraesCS1B01G411600 chr7B 94.118 68 2 2 193 259 256490662 256490728 5.960000e-18 102.0
25 TraesCS1B01G411600 chr2B 89.157 83 6 3 172 253 36413711 36413791 2.140000e-17 100.0
26 TraesCS1B01G411600 chr2B 87.356 87 8 3 209 292 32244883 32244797 2.770000e-16 97.1
27 TraesCS1B01G411600 chr4D 89.610 77 5 3 178 252 506103988 506103913 9.970000e-16 95.3
28 TraesCS1B01G411600 chr5B 88.462 78 7 2 177 253 371912735 371912811 3.580000e-15 93.5
29 TraesCS1B01G411600 chr5D 88.312 77 7 2 174 248 451971404 451971480 1.290000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G411600 chr1B 637814906 637818279 3373 False 6231 6231 100.0000 1 3374 1 chr1B.!!$F4 3373
1 TraesCS1B01G411600 chr1B 637523788 637525290 1502 True 1013 1013 79.4540 907 2396 1 chr1B.!!$R2 1489
2 TraesCS1B01G411600 chr1B 637621646 637623148 1502 False 867 867 77.5750 907 2406 1 chr1B.!!$F3 1499
3 TraesCS1B01G411600 chr1B 637822511 637823122 611 False 815 815 90.4240 2739 3374 1 chr1B.!!$F5 635
4 TraesCS1B01G411600 chr1B 663610186 663612055 1869 True 573 1016 85.2125 443 2289 2 chr1B.!!$R3 1846
5 TraesCS1B01G411600 chr1D 462714370 462716711 2341 False 3369 3369 92.6960 1036 3374 1 chr1D.!!$F3 2338
6 TraesCS1B01G411600 chr1D 462487633 462489134 1501 False 939 939 78.3660 907 2406 1 chr1D.!!$F2 1499
7 TraesCS1B01G411600 chr1D 462717792 462718974 1182 True 649 649 76.9420 1097 2289 1 chr1D.!!$R1 1192
8 TraesCS1B01G411600 chr1A 554221622 554223124 1502 False 941 941 78.6220 907 2396 1 chr1A.!!$F1 1489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 549 0.033109 TCAGCCGGATCTCCTTCTGA 60.033 55.0 5.05 2.23 38.65 3.27 F
861 866 0.108138 GGCGAGTCCTGCAGTGTATT 60.108 55.0 13.81 0.00 0.00 1.89 F
1449 1665 0.325296 TGGGAATAGTGACGCCCTCT 60.325 55.0 0.00 0.00 41.28 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2121 0.254178 CTGATGTCCAGAAGGGTGGG 59.746 60.0 0.00 0.00 45.78 4.61 R
2289 2520 0.405585 AAGCAGGCCTGGTATGTGTT 59.594 50.0 36.27 18.09 40.87 3.32 R
3333 3591 0.734889 AATCTTTGCCATCGCCTTCG 59.265 50.0 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.829064 TTGCAACACCTGTCTAATGAAC 57.171 40.909 0.00 0.00 0.00 3.18
23 24 3.146066 TGCAACACCTGTCTAATGAACC 58.854 45.455 0.00 0.00 0.00 3.62
24 25 2.159627 GCAACACCTGTCTAATGAACCG 59.840 50.000 0.00 0.00 0.00 4.44
25 26 3.659786 CAACACCTGTCTAATGAACCGA 58.340 45.455 0.00 0.00 0.00 4.69
26 27 4.062293 CAACACCTGTCTAATGAACCGAA 58.938 43.478 0.00 0.00 0.00 4.30
27 28 4.345859 ACACCTGTCTAATGAACCGAAA 57.654 40.909 0.00 0.00 0.00 3.46
28 29 4.062991 ACACCTGTCTAATGAACCGAAAC 58.937 43.478 0.00 0.00 0.00 2.78
29 30 4.202326 ACACCTGTCTAATGAACCGAAACT 60.202 41.667 0.00 0.00 0.00 2.66
30 31 5.011329 ACACCTGTCTAATGAACCGAAACTA 59.989 40.000 0.00 0.00 0.00 2.24
31 32 5.929992 CACCTGTCTAATGAACCGAAACTAA 59.070 40.000 0.00 0.00 0.00 2.24
32 33 6.594159 CACCTGTCTAATGAACCGAAACTAAT 59.406 38.462 0.00 0.00 0.00 1.73
33 34 6.594159 ACCTGTCTAATGAACCGAAACTAATG 59.406 38.462 0.00 0.00 0.00 1.90
34 35 6.594159 CCTGTCTAATGAACCGAAACTAATGT 59.406 38.462 0.00 0.00 0.00 2.71
35 36 7.201530 CCTGTCTAATGAACCGAAACTAATGTC 60.202 40.741 0.00 0.00 0.00 3.06
36 37 7.383687 TGTCTAATGAACCGAAACTAATGTCT 58.616 34.615 0.00 0.00 0.00 3.41
37 38 8.525316 TGTCTAATGAACCGAAACTAATGTCTA 58.475 33.333 0.00 0.00 0.00 2.59
38 39 9.021863 GTCTAATGAACCGAAACTAATGTCTAG 57.978 37.037 0.00 0.00 0.00 2.43
39 40 6.663944 AATGAACCGAAACTAATGTCTAGC 57.336 37.500 0.00 0.00 0.00 3.42
40 41 4.501071 TGAACCGAAACTAATGTCTAGCC 58.499 43.478 0.00 0.00 0.00 3.93
41 42 3.160777 ACCGAAACTAATGTCTAGCCG 57.839 47.619 0.00 0.00 0.00 5.52
42 43 2.494870 ACCGAAACTAATGTCTAGCCGT 59.505 45.455 0.00 0.00 0.00 5.68
43 44 3.056322 ACCGAAACTAATGTCTAGCCGTT 60.056 43.478 0.00 0.00 0.00 4.44
44 45 3.550678 CCGAAACTAATGTCTAGCCGTTC 59.449 47.826 0.00 0.00 0.00 3.95
45 46 3.239941 CGAAACTAATGTCTAGCCGTTCG 59.760 47.826 0.00 0.00 0.00 3.95
46 47 4.418392 GAAACTAATGTCTAGCCGTTCGA 58.582 43.478 0.00 0.00 0.00 3.71
47 48 4.445452 AACTAATGTCTAGCCGTTCGAA 57.555 40.909 0.00 0.00 0.00 3.71
48 49 4.650754 ACTAATGTCTAGCCGTTCGAAT 57.349 40.909 0.00 0.00 0.00 3.34
49 50 5.007385 ACTAATGTCTAGCCGTTCGAATT 57.993 39.130 0.00 0.00 0.00 2.17
50 51 4.804139 ACTAATGTCTAGCCGTTCGAATTG 59.196 41.667 0.00 0.00 0.00 2.32
51 52 2.004583 TGTCTAGCCGTTCGAATTGG 57.995 50.000 13.44 13.44 0.00 3.16
52 53 1.287425 GTCTAGCCGTTCGAATTGGG 58.713 55.000 17.84 13.11 0.00 4.12
53 54 1.134907 GTCTAGCCGTTCGAATTGGGA 60.135 52.381 17.84 7.00 0.00 4.37
54 55 1.134907 TCTAGCCGTTCGAATTGGGAC 60.135 52.381 17.84 9.22 0.00 4.46
55 56 0.899720 TAGCCGTTCGAATTGGGACT 59.100 50.000 17.84 14.19 0.00 3.85
56 57 0.899720 AGCCGTTCGAATTGGGACTA 59.100 50.000 17.84 0.00 0.00 2.59
57 58 1.276989 AGCCGTTCGAATTGGGACTAA 59.723 47.619 17.84 0.00 0.00 2.24
58 59 2.093128 AGCCGTTCGAATTGGGACTAAT 60.093 45.455 17.84 0.00 0.00 1.73
59 60 2.031683 GCCGTTCGAATTGGGACTAATG 59.968 50.000 17.84 0.00 0.00 1.90
60 61 3.527533 CCGTTCGAATTGGGACTAATGA 58.472 45.455 0.00 0.00 0.00 2.57
61 62 4.127171 CCGTTCGAATTGGGACTAATGAT 58.873 43.478 0.00 0.00 0.00 2.45
62 63 5.294356 CCGTTCGAATTGGGACTAATGATA 58.706 41.667 0.00 0.00 0.00 2.15
63 64 5.176958 CCGTTCGAATTGGGACTAATGATAC 59.823 44.000 0.00 0.00 0.00 2.24
64 65 5.176958 CGTTCGAATTGGGACTAATGATACC 59.823 44.000 0.00 0.00 0.00 2.73
65 66 5.880164 TCGAATTGGGACTAATGATACCA 57.120 39.130 0.00 0.00 0.00 3.25
66 67 6.433847 TCGAATTGGGACTAATGATACCAT 57.566 37.500 0.00 0.00 33.66 3.55
67 68 6.837312 TCGAATTGGGACTAATGATACCATT 58.163 36.000 0.00 0.00 44.56 3.16
68 69 7.969004 TCGAATTGGGACTAATGATACCATTA 58.031 34.615 0.00 0.00 42.56 1.90
69 70 8.433599 TCGAATTGGGACTAATGATACCATTAA 58.566 33.333 0.00 0.00 42.71 1.40
70 71 9.231297 CGAATTGGGACTAATGATACCATTAAT 57.769 33.333 0.00 0.00 42.71 1.40
72 73 7.759489 TTGGGACTAATGATACCATTAATGC 57.241 36.000 10.11 0.00 42.71 3.56
73 74 6.245408 TGGGACTAATGATACCATTAATGCC 58.755 40.000 10.11 2.03 46.43 4.40
74 75 5.354234 GGGACTAATGATACCATTAATGCCG 59.646 44.000 10.11 0.11 41.00 5.69
75 76 5.354234 GGACTAATGATACCATTAATGCCGG 59.646 44.000 10.11 0.00 42.71 6.13
76 77 5.876357 ACTAATGATACCATTAATGCCGGT 58.124 37.500 10.11 5.61 42.71 5.28
77 78 6.303839 ACTAATGATACCATTAATGCCGGTT 58.696 36.000 10.11 0.00 42.71 4.44
78 79 5.705609 AATGATACCATTAATGCCGGTTC 57.294 39.130 10.11 4.84 40.95 3.62
79 80 4.157849 TGATACCATTAATGCCGGTTCA 57.842 40.909 10.11 6.96 34.12 3.18
80 81 4.724399 TGATACCATTAATGCCGGTTCAT 58.276 39.130 10.11 0.00 34.12 2.57
81 82 5.136828 TGATACCATTAATGCCGGTTCATT 58.863 37.500 10.11 7.97 39.70 2.57
82 83 5.596361 TGATACCATTAATGCCGGTTCATTT 59.404 36.000 11.84 0.00 37.75 2.32
83 84 6.773200 TGATACCATTAATGCCGGTTCATTTA 59.227 34.615 11.84 4.60 37.75 1.40
84 85 5.257082 ACCATTAATGCCGGTTCATTTAC 57.743 39.130 11.84 0.00 37.75 2.01
85 86 4.707448 ACCATTAATGCCGGTTCATTTACA 59.293 37.500 11.84 0.00 37.75 2.41
86 87 5.186021 ACCATTAATGCCGGTTCATTTACAA 59.814 36.000 11.84 2.66 37.75 2.41
87 88 6.102663 CCATTAATGCCGGTTCATTTACAAA 58.897 36.000 11.84 2.35 37.75 2.83
88 89 6.760770 CCATTAATGCCGGTTCATTTACAAAT 59.239 34.615 11.84 4.31 37.75 2.32
89 90 7.042791 CCATTAATGCCGGTTCATTTACAAATC 60.043 37.037 11.84 0.00 37.75 2.17
90 91 3.479505 TGCCGGTTCATTTACAAATCG 57.520 42.857 1.90 0.00 0.00 3.34
91 92 2.162608 TGCCGGTTCATTTACAAATCGG 59.837 45.455 1.90 2.54 36.02 4.18
92 93 2.478879 GCCGGTTCATTTACAAATCGGG 60.479 50.000 1.90 5.10 34.50 5.14
93 94 3.011119 CCGGTTCATTTACAAATCGGGA 58.989 45.455 0.00 0.00 31.94 5.14
94 95 3.181504 CCGGTTCATTTACAAATCGGGAC 60.182 47.826 0.00 0.00 31.94 4.46
95 96 3.687698 CGGTTCATTTACAAATCGGGACT 59.312 43.478 0.00 0.00 0.00 3.85
96 97 4.871557 CGGTTCATTTACAAATCGGGACTA 59.128 41.667 0.00 0.00 0.00 2.59
97 98 5.352016 CGGTTCATTTACAAATCGGGACTAA 59.648 40.000 0.00 0.00 0.00 2.24
98 99 6.037830 CGGTTCATTTACAAATCGGGACTAAT 59.962 38.462 0.00 0.00 0.00 1.73
99 100 7.193595 GGTTCATTTACAAATCGGGACTAATG 58.806 38.462 0.00 0.00 0.00 1.90
100 101 7.148137 GGTTCATTTACAAATCGGGACTAATGT 60.148 37.037 0.00 0.00 0.00 2.71
101 102 7.315247 TCATTTACAAATCGGGACTAATGTG 57.685 36.000 0.00 0.00 0.00 3.21
102 103 6.882140 TCATTTACAAATCGGGACTAATGTGT 59.118 34.615 0.00 0.00 0.00 3.72
103 104 6.730960 TTTACAAATCGGGACTAATGTGTC 57.269 37.500 0.00 0.00 36.31 3.67
104 105 4.553330 ACAAATCGGGACTAATGTGTCT 57.447 40.909 0.00 0.00 37.16 3.41
105 106 4.504858 ACAAATCGGGACTAATGTGTCTC 58.495 43.478 0.00 0.00 37.16 3.36
106 107 4.020573 ACAAATCGGGACTAATGTGTCTCA 60.021 41.667 0.00 0.00 37.29 3.27
107 108 3.802948 ATCGGGACTAATGTGTCTCAC 57.197 47.619 0.00 0.00 37.29 3.51
108 109 1.471287 TCGGGACTAATGTGTCTCACG 59.529 52.381 0.00 0.00 37.29 4.35
109 110 1.201647 CGGGACTAATGTGTCTCACGT 59.798 52.381 0.00 0.00 37.29 4.49
110 111 2.421073 CGGGACTAATGTGTCTCACGTA 59.579 50.000 0.00 0.00 37.29 3.57
111 112 3.119743 CGGGACTAATGTGTCTCACGTAA 60.120 47.826 0.00 0.00 37.29 3.18
112 113 4.616604 CGGGACTAATGTGTCTCACGTAAA 60.617 45.833 0.00 0.00 37.29 2.01
113 114 4.863131 GGGACTAATGTGTCTCACGTAAAG 59.137 45.833 0.00 0.00 37.39 1.85
114 115 5.467705 GGACTAATGTGTCTCACGTAAAGT 58.532 41.667 0.00 8.65 37.14 2.66
115 116 6.349611 GGGACTAATGTGTCTCACGTAAAGTA 60.350 42.308 0.00 0.00 37.39 2.24
116 117 6.746364 GGACTAATGTGTCTCACGTAAAGTAG 59.254 42.308 0.00 4.56 37.14 2.57
117 118 7.211966 ACTAATGTGTCTCACGTAAAGTAGT 57.788 36.000 0.00 4.40 37.14 2.73
118 119 7.655490 ACTAATGTGTCTCACGTAAAGTAGTT 58.345 34.615 0.00 0.00 37.14 2.24
119 120 8.139989 ACTAATGTGTCTCACGTAAAGTAGTTT 58.860 33.333 0.37 0.37 37.14 2.66
120 121 7.781548 AATGTGTCTCACGTAAAGTAGTTTT 57.218 32.000 0.00 0.00 37.14 2.43
121 122 7.781548 ATGTGTCTCACGTAAAGTAGTTTTT 57.218 32.000 0.00 0.00 37.14 1.94
122 123 7.225523 TGTGTCTCACGTAAAGTAGTTTTTC 57.774 36.000 0.00 0.00 37.14 2.29
123 124 7.037438 TGTGTCTCACGTAAAGTAGTTTTTCT 58.963 34.615 0.00 0.00 37.14 2.52
124 125 8.190122 TGTGTCTCACGTAAAGTAGTTTTTCTA 58.810 33.333 0.00 0.00 37.14 2.10
125 126 8.475359 GTGTCTCACGTAAAGTAGTTTTTCTAC 58.525 37.037 0.00 0.00 46.68 2.59
136 137 6.034161 GTAGTTTTTCTACTAGTGCCCTCA 57.966 41.667 5.39 0.00 43.93 3.86
137 138 5.763876 AGTTTTTCTACTAGTGCCCTCAT 57.236 39.130 5.39 0.00 0.00 2.90
138 139 5.735766 AGTTTTTCTACTAGTGCCCTCATC 58.264 41.667 5.39 0.00 0.00 2.92
139 140 5.248477 AGTTTTTCTACTAGTGCCCTCATCA 59.752 40.000 5.39 0.00 0.00 3.07
140 141 5.755409 TTTTCTACTAGTGCCCTCATCAA 57.245 39.130 5.39 0.00 0.00 2.57
141 142 5.344743 TTTCTACTAGTGCCCTCATCAAG 57.655 43.478 5.39 0.00 0.00 3.02
142 143 4.251103 TCTACTAGTGCCCTCATCAAGA 57.749 45.455 5.39 0.00 0.00 3.02
143 144 4.610333 TCTACTAGTGCCCTCATCAAGAA 58.390 43.478 5.39 0.00 0.00 2.52
144 145 5.023452 TCTACTAGTGCCCTCATCAAGAAA 58.977 41.667 5.39 0.00 0.00 2.52
145 146 4.640771 ACTAGTGCCCTCATCAAGAAAA 57.359 40.909 0.00 0.00 0.00 2.29
146 147 4.985538 ACTAGTGCCCTCATCAAGAAAAA 58.014 39.130 0.00 0.00 0.00 1.94
164 165 1.644509 AAAACAGCCCAATCCCTTCC 58.355 50.000 0.00 0.00 0.00 3.46
165 166 0.786435 AAACAGCCCAATCCCTTCCT 59.214 50.000 0.00 0.00 0.00 3.36
166 167 1.681229 AACAGCCCAATCCCTTCCTA 58.319 50.000 0.00 0.00 0.00 2.94
167 168 1.216990 ACAGCCCAATCCCTTCCTAG 58.783 55.000 0.00 0.00 0.00 3.02
168 169 1.274416 ACAGCCCAATCCCTTCCTAGA 60.274 52.381 0.00 0.00 0.00 2.43
169 170 1.141858 CAGCCCAATCCCTTCCTAGAC 59.858 57.143 0.00 0.00 0.00 2.59
170 171 1.010170 AGCCCAATCCCTTCCTAGACT 59.990 52.381 0.00 0.00 0.00 3.24
171 172 1.418264 GCCCAATCCCTTCCTAGACTC 59.582 57.143 0.00 0.00 0.00 3.36
172 173 2.764269 CCCAATCCCTTCCTAGACTCA 58.236 52.381 0.00 0.00 0.00 3.41
173 174 3.115390 CCCAATCCCTTCCTAGACTCAA 58.885 50.000 0.00 0.00 0.00 3.02
174 175 3.523564 CCCAATCCCTTCCTAGACTCAAA 59.476 47.826 0.00 0.00 0.00 2.69
175 176 4.018415 CCCAATCCCTTCCTAGACTCAAAA 60.018 45.833 0.00 0.00 0.00 2.44
176 177 5.516591 CCCAATCCCTTCCTAGACTCAAAAA 60.517 44.000 0.00 0.00 0.00 1.94
225 226 8.472007 AGGAGTACCTAGAACTCATTTAGATG 57.528 38.462 20.28 0.00 45.83 2.90
226 227 8.282982 AGGAGTACCTAGAACTCATTTAGATGA 58.717 37.037 20.28 0.00 45.83 2.92
259 260 8.806429 TTTGGTCTCATTCATCTTTTATAGCA 57.194 30.769 0.00 0.00 0.00 3.49
260 261 7.792374 TGGTCTCATTCATCTTTTATAGCAC 57.208 36.000 0.00 0.00 0.00 4.40
261 262 6.479990 TGGTCTCATTCATCTTTTATAGCACG 59.520 38.462 0.00 0.00 0.00 5.34
262 263 6.358762 GTCTCATTCATCTTTTATAGCACGC 58.641 40.000 0.00 0.00 0.00 5.34
263 264 5.175673 TCTCATTCATCTTTTATAGCACGCG 59.824 40.000 3.53 3.53 0.00 6.01
264 265 4.808895 TCATTCATCTTTTATAGCACGCGT 59.191 37.500 5.58 5.58 0.00 6.01
265 266 4.514545 TTCATCTTTTATAGCACGCGTG 57.485 40.909 34.01 34.01 0.00 5.34
266 267 3.517602 TCATCTTTTATAGCACGCGTGT 58.482 40.909 36.80 25.81 0.00 4.49
275 276 4.339809 CACGCGTGTGTGCTGACG 62.340 66.667 30.50 0.71 41.34 4.35
276 277 4.865761 ACGCGTGTGTGCTGACGT 62.866 61.111 12.93 0.00 37.89 4.34
277 278 4.339809 CGCGTGTGTGCTGACGTG 62.340 66.667 0.00 0.00 39.45 4.49
278 279 2.959599 GCGTGTGTGCTGACGTGA 60.960 61.111 0.00 0.00 37.89 4.35
279 280 2.932083 GCGTGTGTGCTGACGTGAG 61.932 63.158 0.00 0.00 37.89 3.51
299 300 9.826574 ACGTGAGTTATATTTATTCCAGCTAAA 57.173 29.630 0.00 0.00 46.40 1.85
315 316 5.121221 AGCTAAACTGAAAAACAATCCCG 57.879 39.130 0.00 0.00 0.00 5.14
316 317 4.583073 AGCTAAACTGAAAAACAATCCCGT 59.417 37.500 0.00 0.00 0.00 5.28
317 318 4.915667 GCTAAACTGAAAAACAATCCCGTC 59.084 41.667 0.00 0.00 0.00 4.79
318 319 4.316205 AAACTGAAAAACAATCCCGTCC 57.684 40.909 0.00 0.00 0.00 4.79
319 320 2.235891 ACTGAAAAACAATCCCGTCCC 58.764 47.619 0.00 0.00 0.00 4.46
320 321 1.544246 CTGAAAAACAATCCCGTCCCC 59.456 52.381 0.00 0.00 0.00 4.81
321 322 1.146152 TGAAAAACAATCCCGTCCCCT 59.854 47.619 0.00 0.00 0.00 4.79
322 323 1.816835 GAAAAACAATCCCGTCCCCTC 59.183 52.381 0.00 0.00 0.00 4.30
323 324 0.322187 AAAACAATCCCGTCCCCTCG 60.322 55.000 0.00 0.00 0.00 4.63
324 325 1.196104 AAACAATCCCGTCCCCTCGA 61.196 55.000 0.00 0.00 0.00 4.04
325 326 0.981277 AACAATCCCGTCCCCTCGAT 60.981 55.000 0.00 0.00 0.00 3.59
326 327 0.105862 ACAATCCCGTCCCCTCGATA 60.106 55.000 0.00 0.00 0.00 2.92
327 328 1.267121 CAATCCCGTCCCCTCGATAT 58.733 55.000 0.00 0.00 0.00 1.63
328 329 2.225192 ACAATCCCGTCCCCTCGATATA 60.225 50.000 0.00 0.00 0.00 0.86
329 330 3.031736 CAATCCCGTCCCCTCGATATAT 58.968 50.000 0.00 0.00 0.00 0.86
330 331 4.212716 CAATCCCGTCCCCTCGATATATA 58.787 47.826 0.00 0.00 0.00 0.86
331 332 4.531357 ATCCCGTCCCCTCGATATATAA 57.469 45.455 0.00 0.00 0.00 0.98
332 333 3.624777 TCCCGTCCCCTCGATATATAAC 58.375 50.000 0.00 0.00 0.00 1.89
333 334 3.010472 TCCCGTCCCCTCGATATATAACA 59.990 47.826 0.00 0.00 0.00 2.41
334 335 3.380637 CCCGTCCCCTCGATATATAACAG 59.619 52.174 0.00 0.00 0.00 3.16
335 336 4.267536 CCGTCCCCTCGATATATAACAGA 58.732 47.826 0.00 0.00 0.00 3.41
336 337 4.888239 CCGTCCCCTCGATATATAACAGAT 59.112 45.833 0.00 0.00 0.00 2.90
337 338 5.360144 CCGTCCCCTCGATATATAACAGATT 59.640 44.000 0.00 0.00 0.00 2.40
338 339 6.544931 CCGTCCCCTCGATATATAACAGATTA 59.455 42.308 0.00 0.00 0.00 1.75
339 340 7.067859 CCGTCCCCTCGATATATAACAGATTAA 59.932 40.741 0.00 0.00 0.00 1.40
340 341 7.914346 CGTCCCCTCGATATATAACAGATTAAC 59.086 40.741 0.00 0.00 0.00 2.01
341 342 8.746530 GTCCCCTCGATATATAACAGATTAACA 58.253 37.037 0.00 0.00 0.00 2.41
342 343 8.967918 TCCCCTCGATATATAACAGATTAACAG 58.032 37.037 0.00 0.00 0.00 3.16
343 344 8.198109 CCCCTCGATATATAACAGATTAACAGG 58.802 40.741 0.00 0.00 0.00 4.00
344 345 8.198109 CCCTCGATATATAACAGATTAACAGGG 58.802 40.741 0.00 0.00 0.00 4.45
345 346 7.707035 CCTCGATATATAACAGATTAACAGGGC 59.293 40.741 0.00 0.00 0.00 5.19
346 347 7.255569 TCGATATATAACAGATTAACAGGGCG 58.744 38.462 0.00 0.00 0.00 6.13
347 348 6.019801 CGATATATAACAGATTAACAGGGCGC 60.020 42.308 0.00 0.00 0.00 6.53
348 349 2.032680 TAACAGATTAACAGGGCGCC 57.967 50.000 21.18 21.18 0.00 6.53
349 350 0.679960 AACAGATTAACAGGGCGCCC 60.680 55.000 39.29 39.29 0.00 6.13
351 352 0.815615 CAGATTAACAGGGCGCCCTC 60.816 60.000 45.31 31.42 46.28 4.30
352 353 1.887707 GATTAACAGGGCGCCCTCG 60.888 63.158 45.31 36.87 46.28 4.63
362 363 3.775654 CGCCCTCGCCCTCTTTCT 61.776 66.667 0.00 0.00 0.00 2.52
363 364 2.188207 GCCCTCGCCCTCTTTCTC 59.812 66.667 0.00 0.00 0.00 2.87
364 365 2.496817 CCCTCGCCCTCTTTCTCG 59.503 66.667 0.00 0.00 0.00 4.04
365 366 2.496817 CCTCGCCCTCTTTCTCGG 59.503 66.667 0.00 0.00 0.00 4.63
366 367 2.052690 CCTCGCCCTCTTTCTCGGA 61.053 63.158 0.00 0.00 0.00 4.55
367 368 1.605058 CCTCGCCCTCTTTCTCGGAA 61.605 60.000 0.00 0.00 0.00 4.30
368 369 0.246635 CTCGCCCTCTTTCTCGGAAA 59.753 55.000 0.24 0.24 0.00 3.13
369 370 0.682852 TCGCCCTCTTTCTCGGAAAA 59.317 50.000 1.63 0.00 0.00 2.29
370 371 1.071071 TCGCCCTCTTTCTCGGAAAAA 59.929 47.619 1.63 0.00 0.00 1.94
390 391 5.674933 AAAATATCGATCTTCTTTCCGCC 57.325 39.130 0.00 0.00 0.00 6.13
391 392 2.417339 TATCGATCTTCTTTCCGCCG 57.583 50.000 0.00 0.00 0.00 6.46
392 393 0.460311 ATCGATCTTCTTTCCGCCGT 59.540 50.000 0.00 0.00 0.00 5.68
393 394 0.457853 TCGATCTTCTTTCCGCCGTG 60.458 55.000 0.00 0.00 0.00 4.94
394 395 1.716172 GATCTTCTTTCCGCCGTGC 59.284 57.895 0.00 0.00 0.00 5.34
395 396 1.706287 GATCTTCTTTCCGCCGTGCC 61.706 60.000 0.00 0.00 0.00 5.01
396 397 3.788766 CTTCTTTCCGCCGTGCCG 61.789 66.667 0.00 0.00 0.00 5.69
414 415 4.003788 CCGTGACCCCAGCTTCGT 62.004 66.667 0.00 0.00 0.00 3.85
415 416 2.432628 CGTGACCCCAGCTTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
416 417 2.741092 GTGACCCCAGCTTCGTCA 59.259 61.111 3.69 3.69 34.23 4.35
417 418 1.070786 GTGACCCCAGCTTCGTCAA 59.929 57.895 8.46 0.00 38.20 3.18
418 419 0.321653 GTGACCCCAGCTTCGTCAAT 60.322 55.000 8.46 0.00 38.20 2.57
419 420 1.066430 GTGACCCCAGCTTCGTCAATA 60.066 52.381 8.46 0.00 38.20 1.90
420 421 1.066430 TGACCCCAGCTTCGTCAATAC 60.066 52.381 5.09 0.00 33.72 1.89
421 422 1.207329 GACCCCAGCTTCGTCAATACT 59.793 52.381 0.00 0.00 0.00 2.12
422 423 1.207329 ACCCCAGCTTCGTCAATACTC 59.793 52.381 0.00 0.00 0.00 2.59
423 424 1.473434 CCCCAGCTTCGTCAATACTCC 60.473 57.143 0.00 0.00 0.00 3.85
424 425 1.482593 CCCAGCTTCGTCAATACTCCT 59.517 52.381 0.00 0.00 0.00 3.69
425 426 2.482142 CCCAGCTTCGTCAATACTCCTC 60.482 54.545 0.00 0.00 0.00 3.71
426 427 2.482142 CCAGCTTCGTCAATACTCCTCC 60.482 54.545 0.00 0.00 0.00 4.30
427 428 2.166459 CAGCTTCGTCAATACTCCTCCA 59.834 50.000 0.00 0.00 0.00 3.86
428 429 2.832129 AGCTTCGTCAATACTCCTCCAA 59.168 45.455 0.00 0.00 0.00 3.53
429 430 3.452627 AGCTTCGTCAATACTCCTCCAAT 59.547 43.478 0.00 0.00 0.00 3.16
430 431 3.804873 GCTTCGTCAATACTCCTCCAATC 59.195 47.826 0.00 0.00 0.00 2.67
431 432 4.442192 GCTTCGTCAATACTCCTCCAATCT 60.442 45.833 0.00 0.00 0.00 2.40
432 433 5.221263 GCTTCGTCAATACTCCTCCAATCTA 60.221 44.000 0.00 0.00 0.00 1.98
433 434 6.683110 GCTTCGTCAATACTCCTCCAATCTAA 60.683 42.308 0.00 0.00 0.00 2.10
434 435 6.392625 TCGTCAATACTCCTCCAATCTAAG 57.607 41.667 0.00 0.00 0.00 2.18
435 436 4.985409 CGTCAATACTCCTCCAATCTAAGC 59.015 45.833 0.00 0.00 0.00 3.09
436 437 4.985409 GTCAATACTCCTCCAATCTAAGCG 59.015 45.833 0.00 0.00 0.00 4.68
437 438 4.893524 TCAATACTCCTCCAATCTAAGCGA 59.106 41.667 0.00 0.00 0.00 4.93
438 439 4.857509 ATACTCCTCCAATCTAAGCGAC 57.142 45.455 0.00 0.00 0.00 5.19
439 440 2.741145 ACTCCTCCAATCTAAGCGACT 58.259 47.619 0.00 0.00 0.00 4.18
440 441 2.428890 ACTCCTCCAATCTAAGCGACTG 59.571 50.000 0.00 0.00 0.00 3.51
441 442 1.137086 TCCTCCAATCTAAGCGACTGC 59.863 52.381 0.00 0.00 43.24 4.40
491 492 3.972368 GGTAAGGAACCCCCAACTC 57.028 57.895 0.00 0.00 43.16 3.01
492 493 0.035725 GGTAAGGAACCCCCAACTCG 60.036 60.000 0.00 0.00 43.16 4.18
508 510 0.309302 CTCGCTCGGATCTGTTCGAT 59.691 55.000 16.74 0.00 34.77 3.59
531 533 2.738846 CCGTCATTCCTGTTCTTGTCAG 59.261 50.000 0.00 0.00 0.00 3.51
532 534 2.158449 CGTCATTCCTGTTCTTGTCAGC 59.842 50.000 0.00 0.00 0.00 4.26
533 535 2.485814 GTCATTCCTGTTCTTGTCAGCC 59.514 50.000 0.00 0.00 0.00 4.85
542 544 0.324738 TCTTGTCAGCCGGATCTCCT 60.325 55.000 5.05 0.00 0.00 3.69
543 545 0.539051 CTTGTCAGCCGGATCTCCTT 59.461 55.000 5.05 0.00 0.00 3.36
546 548 0.103937 GTCAGCCGGATCTCCTTCTG 59.896 60.000 5.05 0.00 35.64 3.02
547 549 0.033109 TCAGCCGGATCTCCTTCTGA 60.033 55.000 5.05 2.23 38.65 3.27
548 550 1.047002 CAGCCGGATCTCCTTCTGAT 58.953 55.000 5.05 0.00 36.06 2.90
549 551 1.000731 CAGCCGGATCTCCTTCTGATC 59.999 57.143 5.05 0.00 39.49 2.92
550 552 1.133199 AGCCGGATCTCCTTCTGATCT 60.133 52.381 5.05 0.00 39.95 2.75
551 553 2.109128 AGCCGGATCTCCTTCTGATCTA 59.891 50.000 5.05 0.00 39.95 1.98
552 554 2.894126 GCCGGATCTCCTTCTGATCTAA 59.106 50.000 5.05 0.00 39.95 2.10
553 555 3.513515 GCCGGATCTCCTTCTGATCTAAT 59.486 47.826 5.05 0.00 39.95 1.73
554 556 4.381505 GCCGGATCTCCTTCTGATCTAATC 60.382 50.000 5.05 0.00 39.95 1.75
555 557 5.016173 CCGGATCTCCTTCTGATCTAATCT 58.984 45.833 0.00 0.00 39.95 2.40
556 558 5.480073 CCGGATCTCCTTCTGATCTAATCTT 59.520 44.000 0.00 0.00 39.95 2.40
557 559 6.350110 CCGGATCTCCTTCTGATCTAATCTTC 60.350 46.154 0.00 0.00 39.95 2.87
558 560 6.350110 CGGATCTCCTTCTGATCTAATCTTCC 60.350 46.154 0.00 0.00 39.95 3.46
559 561 6.070824 GGATCTCCTTCTGATCTAATCTTCCC 60.071 46.154 0.00 0.00 39.95 3.97
560 562 6.036926 TCTCCTTCTGATCTAATCTTCCCT 57.963 41.667 0.00 0.00 0.00 4.20
561 563 6.448202 TCTCCTTCTGATCTAATCTTCCCTT 58.552 40.000 0.00 0.00 0.00 3.95
562 564 6.905776 TCTCCTTCTGATCTAATCTTCCCTTT 59.094 38.462 0.00 0.00 0.00 3.11
563 565 6.893583 TCCTTCTGATCTAATCTTCCCTTTG 58.106 40.000 0.00 0.00 0.00 2.77
564 566 6.445139 TCCTTCTGATCTAATCTTCCCTTTGT 59.555 38.462 0.00 0.00 0.00 2.83
565 567 7.037297 TCCTTCTGATCTAATCTTCCCTTTGTT 60.037 37.037 0.00 0.00 0.00 2.83
566 568 7.066766 CCTTCTGATCTAATCTTCCCTTTGTTG 59.933 40.741 0.00 0.00 0.00 3.33
567 569 7.020827 TCTGATCTAATCTTCCCTTTGTTGT 57.979 36.000 0.00 0.00 0.00 3.32
568 570 6.881065 TCTGATCTAATCTTCCCTTTGTTGTG 59.119 38.462 0.00 0.00 0.00 3.33
569 571 6.778821 TGATCTAATCTTCCCTTTGTTGTGA 58.221 36.000 0.00 0.00 0.00 3.58
570 572 7.405292 TGATCTAATCTTCCCTTTGTTGTGAT 58.595 34.615 0.00 0.00 0.00 3.06
571 573 7.337689 TGATCTAATCTTCCCTTTGTTGTGATG 59.662 37.037 0.00 0.00 0.00 3.07
572 574 6.778821 TCTAATCTTCCCTTTGTTGTGATGA 58.221 36.000 0.00 0.00 0.00 2.92
573 575 7.230747 TCTAATCTTCCCTTTGTTGTGATGAA 58.769 34.615 0.00 0.00 0.00 2.57
574 576 6.729690 AATCTTCCCTTTGTTGTGATGAAA 57.270 33.333 0.00 0.00 0.00 2.69
575 577 6.923199 ATCTTCCCTTTGTTGTGATGAAAT 57.077 33.333 0.00 0.00 0.00 2.17
576 578 6.331369 TCTTCCCTTTGTTGTGATGAAATC 57.669 37.500 0.00 0.00 45.83 2.17
609 611 0.250234 TTGGCTCAAGGTCGATCTGG 59.750 55.000 0.00 0.00 0.00 3.86
610 612 1.522580 GGCTCAAGGTCGATCTGGC 60.523 63.158 0.00 4.42 0.00 4.85
647 649 4.464951 TGTAGTATTCTATATGGTGCGGGG 59.535 45.833 0.00 0.00 0.00 5.73
674 679 7.600065 GCATCTTCATATGTATTTTGATGCCT 58.400 34.615 21.45 0.00 45.40 4.75
690 695 5.826643 TGATGCCTATTACCCTCAAACTTT 58.173 37.500 0.00 0.00 0.00 2.66
703 708 5.394115 CCCTCAAACTTTTGCTGTTACTGTT 60.394 40.000 0.00 0.00 38.05 3.16
704 709 6.099341 CCTCAAACTTTTGCTGTTACTGTTT 58.901 36.000 0.00 0.00 38.05 2.83
705 710 6.589907 CCTCAAACTTTTGCTGTTACTGTTTT 59.410 34.615 0.00 0.00 38.05 2.43
706 711 7.201435 CCTCAAACTTTTGCTGTTACTGTTTTC 60.201 37.037 0.00 0.00 38.05 2.29
707 712 7.148641 TCAAACTTTTGCTGTTACTGTTTTCA 58.851 30.769 0.00 0.00 38.05 2.69
708 713 7.328249 TCAAACTTTTGCTGTTACTGTTTTCAG 59.672 33.333 0.00 0.00 43.95 3.02
725 730 6.818644 TGTTTTCAGATAGTATCACCAAGAGC 59.181 38.462 12.66 0.00 0.00 4.09
726 731 6.544928 TTTCAGATAGTATCACCAAGAGCA 57.455 37.500 12.66 0.00 0.00 4.26
727 732 6.544928 TTCAGATAGTATCACCAAGAGCAA 57.455 37.500 12.66 0.00 0.00 3.91
728 733 6.737720 TCAGATAGTATCACCAAGAGCAAT 57.262 37.500 12.66 0.00 0.00 3.56
729 734 6.753180 TCAGATAGTATCACCAAGAGCAATC 58.247 40.000 12.66 0.00 0.00 2.67
730 735 6.324770 TCAGATAGTATCACCAAGAGCAATCA 59.675 38.462 12.66 0.00 0.00 2.57
731 736 7.015974 TCAGATAGTATCACCAAGAGCAATCAT 59.984 37.037 12.66 0.00 0.00 2.45
732 737 7.660617 CAGATAGTATCACCAAGAGCAATCATT 59.339 37.037 12.66 0.00 0.00 2.57
733 738 7.877097 AGATAGTATCACCAAGAGCAATCATTC 59.123 37.037 12.66 0.00 0.00 2.67
734 739 5.128919 AGTATCACCAAGAGCAATCATTCC 58.871 41.667 0.00 0.00 0.00 3.01
735 740 3.726557 TCACCAAGAGCAATCATTCCT 57.273 42.857 0.00 0.00 0.00 3.36
736 741 3.614092 TCACCAAGAGCAATCATTCCTC 58.386 45.455 0.00 0.00 0.00 3.71
737 742 3.265221 TCACCAAGAGCAATCATTCCTCT 59.735 43.478 0.00 0.00 37.54 3.69
738 743 4.015084 CACCAAGAGCAATCATTCCTCTT 58.985 43.478 0.00 0.00 44.38 2.85
739 744 5.045651 TCACCAAGAGCAATCATTCCTCTTA 60.046 40.000 3.08 0.00 42.35 2.10
740 745 5.649395 CACCAAGAGCAATCATTCCTCTTAA 59.351 40.000 3.08 0.00 42.35 1.85
741 746 6.151648 CACCAAGAGCAATCATTCCTCTTAAA 59.848 38.462 3.08 0.00 42.35 1.52
742 747 6.894103 ACCAAGAGCAATCATTCCTCTTAAAT 59.106 34.615 3.08 0.00 42.35 1.40
743 748 7.398332 ACCAAGAGCAATCATTCCTCTTAAATT 59.602 33.333 3.08 0.00 42.35 1.82
744 749 8.906867 CCAAGAGCAATCATTCCTCTTAAATTA 58.093 33.333 3.08 0.00 42.35 1.40
811 816 8.907222 ATAAAAATTTGGTTGATCTTGCTTGT 57.093 26.923 0.00 0.00 0.00 3.16
812 817 7.628769 AAAAATTTGGTTGATCTTGCTTGTT 57.371 28.000 0.00 0.00 0.00 2.83
813 818 6.849588 AAATTTGGTTGATCTTGCTTGTTC 57.150 33.333 0.00 0.00 0.00 3.18
814 819 3.624326 TTGGTTGATCTTGCTTGTTCG 57.376 42.857 0.00 0.00 0.00 3.95
815 820 2.571212 TGGTTGATCTTGCTTGTTCGT 58.429 42.857 0.00 0.00 0.00 3.85
816 821 2.948979 TGGTTGATCTTGCTTGTTCGTT 59.051 40.909 0.00 0.00 0.00 3.85
817 822 3.380004 TGGTTGATCTTGCTTGTTCGTTT 59.620 39.130 0.00 0.00 0.00 3.60
818 823 4.142271 TGGTTGATCTTGCTTGTTCGTTTT 60.142 37.500 0.00 0.00 0.00 2.43
819 824 4.803613 GGTTGATCTTGCTTGTTCGTTTTT 59.196 37.500 0.00 0.00 0.00 1.94
820 825 5.051708 GGTTGATCTTGCTTGTTCGTTTTTC 60.052 40.000 0.00 0.00 0.00 2.29
821 826 5.242069 TGATCTTGCTTGTTCGTTTTTCA 57.758 34.783 0.00 0.00 0.00 2.69
822 827 5.645624 TGATCTTGCTTGTTCGTTTTTCAA 58.354 33.333 0.00 0.00 0.00 2.69
823 828 6.096036 TGATCTTGCTTGTTCGTTTTTCAAA 58.904 32.000 0.00 0.00 0.00 2.69
824 829 6.587990 TGATCTTGCTTGTTCGTTTTTCAAAA 59.412 30.769 0.00 0.00 0.00 2.44
825 830 6.147038 TCTTGCTTGTTCGTTTTTCAAAAC 57.853 33.333 5.25 5.25 43.61 2.43
826 831 5.692204 TCTTGCTTGTTCGTTTTTCAAAACA 59.308 32.000 14.05 1.04 46.52 2.83
827 832 5.907197 TGCTTGTTCGTTTTTCAAAACAA 57.093 30.435 14.05 6.12 46.52 2.83
828 833 6.473397 TGCTTGTTCGTTTTTCAAAACAAT 57.527 29.167 14.05 0.00 46.52 2.71
829 834 7.582435 TGCTTGTTCGTTTTTCAAAACAATA 57.418 28.000 14.05 4.98 46.52 1.90
830 835 7.449027 TGCTTGTTCGTTTTTCAAAACAATAC 58.551 30.769 14.05 9.11 46.52 1.89
831 836 7.116376 TGCTTGTTCGTTTTTCAAAACAATACA 59.884 29.630 14.05 11.03 46.52 2.29
832 837 7.630606 GCTTGTTCGTTTTTCAAAACAATACAG 59.369 33.333 14.05 6.26 46.52 2.74
833 838 8.744008 TTGTTCGTTTTTCAAAACAATACAGA 57.256 26.923 14.05 1.36 46.52 3.41
834 839 8.918961 TGTTCGTTTTTCAAAACAATACAGAT 57.081 26.923 14.05 0.00 46.52 2.90
849 854 3.444703 ACAGATATGTTCAGGCGAGTC 57.555 47.619 0.00 0.00 0.00 3.36
859 864 1.606601 AGGCGAGTCCTGCAGTGTA 60.607 57.895 13.81 0.00 45.54 2.90
861 866 0.108138 GGCGAGTCCTGCAGTGTATT 60.108 55.000 13.81 0.00 0.00 1.89
862 867 1.002366 GCGAGTCCTGCAGTGTATTG 58.998 55.000 13.81 0.86 0.00 1.90
863 868 1.002366 CGAGTCCTGCAGTGTATTGC 58.998 55.000 13.81 0.00 44.33 3.56
864 869 1.373570 GAGTCCTGCAGTGTATTGCC 58.626 55.000 13.81 0.00 43.43 4.52
868 877 1.091771 CCTGCAGTGTATTGCCCTCG 61.092 60.000 13.81 0.00 43.43 4.63
882 1039 1.477295 GCCCTCGGCTGATATAGTACC 59.523 57.143 0.00 0.00 46.69 3.34
885 1042 3.769844 CCCTCGGCTGATATAGTACCAAT 59.230 47.826 0.00 0.00 0.00 3.16
897 1054 9.582648 TGATATAGTACCAATAGCAGTCAGTTA 57.417 33.333 0.88 0.00 0.00 2.24
903 1060 9.953565 AGTACCAATAGCAGTCAGTTAAATTTA 57.046 29.630 0.00 0.00 0.00 1.40
947 1138 3.322828 TCTGGGTTCACTGTACTAACACC 59.677 47.826 0.00 0.00 0.00 4.16
991 1182 3.683365 TCACTGCAGAACATCTTGCTA 57.317 42.857 23.35 0.00 0.00 3.49
1002 1193 9.443283 GCAGAACATCTTGCTAAATTAGTAATG 57.557 33.333 4.10 3.97 30.07 1.90
1003 1194 9.443283 CAGAACATCTTGCTAAATTAGTAATGC 57.557 33.333 4.10 0.00 30.07 3.56
1053 1248 4.847198 TGATGGATAGCAGCAAGAGAAAA 58.153 39.130 0.00 0.00 0.00 2.29
1054 1249 4.880120 TGATGGATAGCAGCAAGAGAAAAG 59.120 41.667 0.00 0.00 0.00 2.27
1092 1287 1.016627 GCGATGCTGCCAAGATTACA 58.983 50.000 0.00 0.00 0.00 2.41
1140 1338 3.449632 GAAGAAGGCCGTTGTATCTCTC 58.550 50.000 0.00 0.00 0.00 3.20
1163 1361 1.242076 ACACTGTTGCTTCCTGATGC 58.758 50.000 0.00 0.00 0.00 3.91
1195 1393 1.041447 GGTGCTACTTCGGCTCCCTA 61.041 60.000 0.00 0.00 37.37 3.53
1272 1470 1.915489 TCCAAGGATTTCTGCAGCCTA 59.085 47.619 9.47 0.00 0.00 3.93
1274 1472 1.667724 CAAGGATTTCTGCAGCCTACG 59.332 52.381 9.47 1.22 0.00 3.51
1292 1490 0.394192 CGCATGGCCATCTCTAAGGA 59.606 55.000 17.61 0.00 0.00 3.36
1329 1527 2.575694 AGCTACTCATGCTTGTCTCG 57.424 50.000 0.00 0.00 37.52 4.04
1389 1605 2.888863 CCGTCAGGCTCCAGAGAC 59.111 66.667 0.00 0.00 36.46 3.36
1407 1623 4.094090 AGACGATTTACTCTTCACCGTC 57.906 45.455 0.00 0.00 43.34 4.79
1449 1665 0.325296 TGGGAATAGTGACGCCCTCT 60.325 55.000 0.00 0.00 41.28 3.69
1539 1755 2.476051 GCAATCACACGTCTGCCG 59.524 61.111 0.00 0.00 44.03 5.69
1553 1769 2.184579 GCCGCCTCACTGTACTCC 59.815 66.667 0.00 0.00 0.00 3.85
1554 1770 2.646175 GCCGCCTCACTGTACTCCA 61.646 63.158 0.00 0.00 0.00 3.86
1575 1791 1.670811 CCAACATATCGTTCCACTGCC 59.329 52.381 0.00 0.00 34.86 4.85
1581 1797 1.827399 ATCGTTCCACTGCCGGACTT 61.827 55.000 5.05 0.00 33.75 3.01
1658 1874 1.070134 CGGTGACAAGGAGAGGAACAA 59.930 52.381 0.00 0.00 0.00 2.83
1685 1901 2.815647 GTACACGCCTGGAGCTGC 60.816 66.667 0.00 0.00 40.39 5.25
1730 1949 2.054799 AGGAGTGCCTTTCAGGTTGTA 58.945 47.619 0.00 0.00 43.90 2.41
1860 2079 3.055094 GGACAAGAGCTCCCATCTTAACA 60.055 47.826 10.93 0.00 35.26 2.41
1870 2089 5.418840 GCTCCCATCTTAACATTTTCCTTGA 59.581 40.000 0.00 0.00 0.00 3.02
1902 2121 4.857251 GGATGTGTCCGATCACCC 57.143 61.111 7.30 0.40 37.51 4.61
2097 2322 4.014847 TCATCGAATTCATTTGTTCGGC 57.985 40.909 6.22 0.00 45.23 5.54
2180 2405 3.961408 TGTAGGTCAGGGAAGAAGATAGC 59.039 47.826 0.00 0.00 0.00 2.97
2206 2431 4.059008 GCTTCTAGCAAAGACAAGTTCG 57.941 45.455 0.00 0.00 41.89 3.95
2275 2506 2.158534 GCTCTAGAGACCATCCTCTCCA 60.159 54.545 24.24 0.00 42.17 3.86
2289 2520 1.546029 CTCTCCATCACCGAGACACAA 59.454 52.381 0.00 0.00 32.92 3.33
2354 2594 3.341823 AGAGCCTTGTTCAAGTGCATAG 58.658 45.455 19.62 5.04 0.00 2.23
2355 2595 3.077359 GAGCCTTGTTCAAGTGCATAGT 58.923 45.455 19.62 6.85 0.00 2.12
2413 2659 3.382546 GCTAATGCCACCAAATCAGACAT 59.617 43.478 0.00 0.00 0.00 3.06
2417 2669 1.895131 GCCACCAAATCAGACATGGTT 59.105 47.619 6.27 0.00 44.92 3.67
2422 2674 6.700352 CCACCAAATCAGACATGGTTTAAAT 58.300 36.000 6.27 0.00 44.92 1.40
2433 2685 7.639461 CAGACATGGTTTAAATTTTTGTGCAAC 59.361 33.333 0.00 0.00 37.35 4.17
2434 2686 7.552330 AGACATGGTTTAAATTTTTGTGCAACT 59.448 29.630 0.00 0.00 38.04 3.16
2435 2687 8.723942 ACATGGTTTAAATTTTTGTGCAACTA 57.276 26.923 0.00 0.00 38.04 2.24
2436 2688 8.825745 ACATGGTTTAAATTTTTGTGCAACTAG 58.174 29.630 0.00 0.00 38.04 2.57
2465 2718 5.258841 TGCTCAGATTGATTTTGACTGGAT 58.741 37.500 0.00 0.00 0.00 3.41
2467 2720 6.317140 TGCTCAGATTGATTTTGACTGGATAC 59.683 38.462 0.00 0.00 0.00 2.24
2495 2748 7.928307 ATTCTGTCATGCATTAAACAGTACT 57.072 32.000 23.12 12.52 40.01 2.73
2545 2798 8.147058 GTCACTGTTGTGGATATCTTCTATCAT 58.853 37.037 2.05 0.00 43.94 2.45
2580 2833 8.520835 TTCAAATCTCGTCGATATTATTCCTG 57.479 34.615 6.31 2.05 0.00 3.86
2581 2834 7.090808 TCAAATCTCGTCGATATTATTCCTGG 58.909 38.462 6.31 0.00 0.00 4.45
2582 2835 4.436242 TCTCGTCGATATTATTCCTGGC 57.564 45.455 0.00 0.00 0.00 4.85
2586 2839 3.428870 CGTCGATATTATTCCTGGCACAC 59.571 47.826 0.00 0.00 0.00 3.82
2588 2841 2.157668 CGATATTATTCCTGGCACACGC 59.842 50.000 0.00 0.00 37.44 5.34
2632 2885 7.931578 TGAAGTTGGTTAATGTTATACCTGG 57.068 36.000 0.00 0.00 33.05 4.45
2720 2973 9.727627 GCTCCATTCATTTGAAAAGAGTATTAG 57.272 33.333 17.33 0.00 38.47 1.73
2760 3013 8.469200 CACACAATGATGTATGGGAAATTAGTT 58.531 33.333 0.00 0.00 37.82 2.24
2912 3165 2.997980 TCTCAGCCACAGTTTTGTTGA 58.002 42.857 0.00 0.00 34.62 3.18
2946 3199 8.268850 ACGTTTTAGAGATTTCTGCATACAAT 57.731 30.769 0.00 0.00 34.79 2.71
2986 3242 3.431673 TTGTCCCAGTTATGCATGTGA 57.568 42.857 10.16 0.00 0.00 3.58
3033 3289 7.595130 CGAGATCGTGATGACTGGATTAATTTA 59.405 37.037 0.00 0.00 34.11 1.40
3067 3324 1.604604 ACCCATCAAGTTGGTGTTCG 58.395 50.000 14.91 4.72 34.77 3.95
3165 3422 7.218773 CGACACAATGATCATGGTAATTGTTTC 59.781 37.037 17.76 18.74 40.36 2.78
3166 3423 7.894708 ACACAATGATCATGGTAATTGTTTCA 58.105 30.769 17.76 0.00 40.36 2.69
3167 3424 8.533657 ACACAATGATCATGGTAATTGTTTCAT 58.466 29.630 17.76 3.22 40.36 2.57
3178 3436 6.314400 TGGTAATTGTTTCATAGTTCTACGCC 59.686 38.462 0.00 0.00 0.00 5.68
3225 3483 2.099263 TCCTTGAACATCTCCGTCGATC 59.901 50.000 0.00 0.00 0.00 3.69
3288 3546 8.151141 TCTATCTGATGCTTCAATGACAAATC 57.849 34.615 3.65 0.00 0.00 2.17
3327 3585 2.574322 CTTTGTGCTTCAAATCCGTCG 58.426 47.619 7.76 0.00 43.78 5.12
3332 3590 0.391263 GCTTCAAATCCGTCGGACCT 60.391 55.000 18.08 3.70 32.98 3.85
3333 3591 1.641577 CTTCAAATCCGTCGGACCTC 58.358 55.000 18.08 0.00 32.98 3.85
3362 3620 4.557296 CGATGGCAAAGATTTATGCGGATT 60.557 41.667 0.00 0.00 43.47 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.218417 GGTTCATTAGACAGGTGTTGCAAT 59.782 41.667 0.59 0.00 0.00 3.56
3 4 2.159627 CGGTTCATTAGACAGGTGTTGC 59.840 50.000 0.00 0.00 0.00 4.17
6 7 4.062991 GTTTCGGTTCATTAGACAGGTGT 58.937 43.478 0.00 0.00 0.00 4.16
7 8 4.315803 AGTTTCGGTTCATTAGACAGGTG 58.684 43.478 0.00 0.00 0.00 4.00
8 9 4.618920 AGTTTCGGTTCATTAGACAGGT 57.381 40.909 0.00 0.00 0.00 4.00
9 10 6.594159 ACATTAGTTTCGGTTCATTAGACAGG 59.406 38.462 0.00 0.00 0.00 4.00
10 11 7.545965 AGACATTAGTTTCGGTTCATTAGACAG 59.454 37.037 0.00 0.00 0.00 3.51
11 12 7.383687 AGACATTAGTTTCGGTTCATTAGACA 58.616 34.615 0.00 0.00 0.00 3.41
12 13 7.829378 AGACATTAGTTTCGGTTCATTAGAC 57.171 36.000 0.00 0.00 0.00 2.59
13 14 7.705325 GCTAGACATTAGTTTCGGTTCATTAGA 59.295 37.037 0.00 0.00 0.00 2.10
14 15 7.042658 GGCTAGACATTAGTTTCGGTTCATTAG 60.043 40.741 0.00 0.00 0.00 1.73
15 16 6.759827 GGCTAGACATTAGTTTCGGTTCATTA 59.240 38.462 0.00 0.00 0.00 1.90
16 17 5.585047 GGCTAGACATTAGTTTCGGTTCATT 59.415 40.000 0.00 0.00 0.00 2.57
17 18 5.116882 GGCTAGACATTAGTTTCGGTTCAT 58.883 41.667 0.00 0.00 0.00 2.57
18 19 4.501071 GGCTAGACATTAGTTTCGGTTCA 58.499 43.478 0.00 0.00 0.00 3.18
19 20 3.550678 CGGCTAGACATTAGTTTCGGTTC 59.449 47.826 0.00 0.00 0.00 3.62
20 21 3.056322 ACGGCTAGACATTAGTTTCGGTT 60.056 43.478 0.00 0.00 0.00 4.44
21 22 2.494870 ACGGCTAGACATTAGTTTCGGT 59.505 45.455 0.00 0.00 0.00 4.69
22 23 3.160777 ACGGCTAGACATTAGTTTCGG 57.839 47.619 0.00 0.00 0.00 4.30
23 24 3.239941 CGAACGGCTAGACATTAGTTTCG 59.760 47.826 0.00 0.00 0.00 3.46
24 25 4.418392 TCGAACGGCTAGACATTAGTTTC 58.582 43.478 0.00 0.00 0.00 2.78
25 26 4.445452 TCGAACGGCTAGACATTAGTTT 57.555 40.909 0.00 0.00 0.00 2.66
26 27 4.445452 TTCGAACGGCTAGACATTAGTT 57.555 40.909 0.00 0.00 0.00 2.24
27 28 4.650754 ATTCGAACGGCTAGACATTAGT 57.349 40.909 0.00 0.00 0.00 2.24
28 29 4.209288 CCAATTCGAACGGCTAGACATTAG 59.791 45.833 0.00 0.00 0.00 1.73
29 30 4.116961 CCAATTCGAACGGCTAGACATTA 58.883 43.478 0.00 0.00 0.00 1.90
30 31 2.936498 CCAATTCGAACGGCTAGACATT 59.064 45.455 0.00 0.00 0.00 2.71
31 32 2.550978 CCAATTCGAACGGCTAGACAT 58.449 47.619 0.00 0.00 0.00 3.06
32 33 1.404986 CCCAATTCGAACGGCTAGACA 60.405 52.381 0.00 0.00 0.00 3.41
33 34 1.134907 TCCCAATTCGAACGGCTAGAC 60.135 52.381 0.00 0.00 0.00 2.59
34 35 1.134907 GTCCCAATTCGAACGGCTAGA 60.135 52.381 0.00 0.00 0.00 2.43
35 36 1.134788 AGTCCCAATTCGAACGGCTAG 60.135 52.381 0.00 0.00 0.00 3.42
36 37 0.899720 AGTCCCAATTCGAACGGCTA 59.100 50.000 0.00 0.00 0.00 3.93
37 38 0.899720 TAGTCCCAATTCGAACGGCT 59.100 50.000 0.00 5.20 0.00 5.52
38 39 1.729284 TTAGTCCCAATTCGAACGGC 58.271 50.000 0.00 0.00 0.00 5.68
39 40 3.527533 TCATTAGTCCCAATTCGAACGG 58.472 45.455 0.00 3.98 0.00 4.44
40 41 5.176958 GGTATCATTAGTCCCAATTCGAACG 59.823 44.000 0.00 0.00 0.00 3.95
41 42 6.053005 TGGTATCATTAGTCCCAATTCGAAC 58.947 40.000 0.00 0.00 0.00 3.95
42 43 6.241882 TGGTATCATTAGTCCCAATTCGAA 57.758 37.500 0.00 0.00 0.00 3.71
43 44 5.880164 TGGTATCATTAGTCCCAATTCGA 57.120 39.130 0.00 0.00 0.00 3.71
44 45 8.615878 TTAATGGTATCATTAGTCCCAATTCG 57.384 34.615 8.40 0.00 43.99 3.34
46 47 8.806146 GCATTAATGGTATCATTAGTCCCAATT 58.194 33.333 17.02 0.00 43.99 2.32
47 48 7.397192 GGCATTAATGGTATCATTAGTCCCAAT 59.603 37.037 17.02 0.00 43.99 3.16
48 49 6.719370 GGCATTAATGGTATCATTAGTCCCAA 59.281 38.462 17.02 0.00 43.99 4.12
49 50 6.245408 GGCATTAATGGTATCATTAGTCCCA 58.755 40.000 17.02 0.00 43.99 4.37
50 51 5.354234 CGGCATTAATGGTATCATTAGTCCC 59.646 44.000 17.02 5.01 43.99 4.46
51 52 5.354234 CCGGCATTAATGGTATCATTAGTCC 59.646 44.000 17.02 9.69 43.99 3.85
52 53 5.938125 ACCGGCATTAATGGTATCATTAGTC 59.062 40.000 17.02 0.00 43.99 2.59
53 54 5.876357 ACCGGCATTAATGGTATCATTAGT 58.124 37.500 17.02 3.38 43.99 2.24
54 55 6.429692 TGAACCGGCATTAATGGTATCATTAG 59.570 38.462 17.02 0.30 43.99 1.73
55 56 6.299922 TGAACCGGCATTAATGGTATCATTA 58.700 36.000 17.02 4.23 42.90 1.90
56 57 5.136828 TGAACCGGCATTAATGGTATCATT 58.863 37.500 17.02 6.44 44.87 2.57
57 58 4.724399 TGAACCGGCATTAATGGTATCAT 58.276 39.130 17.02 0.00 34.11 2.45
58 59 4.157849 TGAACCGGCATTAATGGTATCA 57.842 40.909 17.02 9.75 34.11 2.15
59 60 5.705609 AATGAACCGGCATTAATGGTATC 57.294 39.130 17.02 7.73 36.76 2.24
60 61 6.547880 TGTAAATGAACCGGCATTAATGGTAT 59.452 34.615 17.02 0.00 37.50 2.73
61 62 5.886474 TGTAAATGAACCGGCATTAATGGTA 59.114 36.000 17.02 0.00 37.50 3.25
62 63 4.707448 TGTAAATGAACCGGCATTAATGGT 59.293 37.500 17.02 3.91 37.50 3.55
63 64 5.255710 TGTAAATGAACCGGCATTAATGG 57.744 39.130 17.02 3.25 37.50 3.16
64 65 7.305935 CGATTTGTAAATGAACCGGCATTAATG 60.306 37.037 11.27 11.27 37.50 1.90
65 66 6.695278 CGATTTGTAAATGAACCGGCATTAAT 59.305 34.615 0.00 0.92 37.50 1.40
66 67 6.030849 CGATTTGTAAATGAACCGGCATTAA 58.969 36.000 0.00 0.00 37.50 1.40
67 68 5.449314 CCGATTTGTAAATGAACCGGCATTA 60.449 40.000 0.00 0.00 37.50 1.90
68 69 4.420168 CGATTTGTAAATGAACCGGCATT 58.580 39.130 0.00 0.44 40.04 3.56
69 70 3.181491 CCGATTTGTAAATGAACCGGCAT 60.181 43.478 0.00 0.00 0.00 4.40
70 71 2.162608 CCGATTTGTAAATGAACCGGCA 59.837 45.455 0.00 0.00 0.00 5.69
71 72 2.478879 CCCGATTTGTAAATGAACCGGC 60.479 50.000 0.00 0.00 34.90 6.13
72 73 3.011119 TCCCGATTTGTAAATGAACCGG 58.989 45.455 0.00 0.00 35.88 5.28
73 74 3.687698 AGTCCCGATTTGTAAATGAACCG 59.312 43.478 0.00 0.00 0.00 4.44
74 75 6.746745 TTAGTCCCGATTTGTAAATGAACC 57.253 37.500 0.00 0.00 0.00 3.62
75 76 7.696453 CACATTAGTCCCGATTTGTAAATGAAC 59.304 37.037 0.00 0.00 0.00 3.18
76 77 7.392113 ACACATTAGTCCCGATTTGTAAATGAA 59.608 33.333 0.00 0.00 0.00 2.57
77 78 6.882140 ACACATTAGTCCCGATTTGTAAATGA 59.118 34.615 0.00 0.00 0.00 2.57
78 79 7.065803 AGACACATTAGTCCCGATTTGTAAATG 59.934 37.037 0.00 0.00 39.34 2.32
79 80 7.110155 AGACACATTAGTCCCGATTTGTAAAT 58.890 34.615 0.00 0.00 39.34 1.40
80 81 6.469410 AGACACATTAGTCCCGATTTGTAAA 58.531 36.000 0.00 0.00 39.34 2.01
81 82 6.045072 AGACACATTAGTCCCGATTTGTAA 57.955 37.500 0.00 0.00 39.34 2.41
82 83 5.186215 TGAGACACATTAGTCCCGATTTGTA 59.814 40.000 0.00 0.00 39.34 2.41
83 84 4.020573 TGAGACACATTAGTCCCGATTTGT 60.021 41.667 0.00 0.00 39.34 2.83
84 85 4.330074 GTGAGACACATTAGTCCCGATTTG 59.670 45.833 0.00 0.00 39.34 2.32
85 86 4.504858 GTGAGACACATTAGTCCCGATTT 58.495 43.478 0.00 0.00 39.34 2.17
86 87 3.428999 CGTGAGACACATTAGTCCCGATT 60.429 47.826 0.00 0.00 39.34 3.34
87 88 2.099263 CGTGAGACACATTAGTCCCGAT 59.901 50.000 0.00 0.00 39.34 4.18
88 89 1.471287 CGTGAGACACATTAGTCCCGA 59.529 52.381 0.00 0.00 39.34 5.14
89 90 1.201647 ACGTGAGACACATTAGTCCCG 59.798 52.381 0.00 0.00 39.34 5.14
90 91 4.445452 TTACGTGAGACACATTAGTCCC 57.555 45.455 0.00 0.00 39.34 4.46
91 92 5.467705 ACTTTACGTGAGACACATTAGTCC 58.532 41.667 0.00 0.00 39.34 3.85
92 93 7.303998 ACTACTTTACGTGAGACACATTAGTC 58.696 38.462 0.00 0.00 38.81 2.59
93 94 7.211966 ACTACTTTACGTGAGACACATTAGT 57.788 36.000 0.00 0.00 33.40 2.24
94 95 8.516811 AAACTACTTTACGTGAGACACATTAG 57.483 34.615 0.00 0.00 33.40 1.73
95 96 8.876275 AAAACTACTTTACGTGAGACACATTA 57.124 30.769 0.00 0.00 33.40 1.90
96 97 7.781548 AAAACTACTTTACGTGAGACACATT 57.218 32.000 0.00 0.00 33.40 2.71
97 98 7.709613 AGAAAAACTACTTTACGTGAGACACAT 59.290 33.333 0.00 0.00 33.40 3.21
98 99 7.037438 AGAAAAACTACTTTACGTGAGACACA 58.963 34.615 0.00 0.00 33.40 3.72
99 100 7.460751 AGAAAAACTACTTTACGTGAGACAC 57.539 36.000 0.00 0.00 0.00 3.67
100 101 8.566008 GTAGAAAAACTACTTTACGTGAGACA 57.434 34.615 0.00 0.00 45.56 3.41
114 115 6.439375 TGATGAGGGCACTAGTAGAAAAACTA 59.561 38.462 3.59 0.00 0.00 2.24
115 116 5.248477 TGATGAGGGCACTAGTAGAAAAACT 59.752 40.000 3.59 0.00 0.00 2.66
116 117 5.488341 TGATGAGGGCACTAGTAGAAAAAC 58.512 41.667 3.59 0.00 0.00 2.43
117 118 5.755409 TGATGAGGGCACTAGTAGAAAAA 57.245 39.130 3.59 0.00 0.00 1.94
118 119 5.483937 TCTTGATGAGGGCACTAGTAGAAAA 59.516 40.000 3.59 0.00 0.00 2.29
119 120 5.023452 TCTTGATGAGGGCACTAGTAGAAA 58.977 41.667 3.59 0.00 0.00 2.52
120 121 4.610333 TCTTGATGAGGGCACTAGTAGAA 58.390 43.478 3.59 0.00 0.00 2.10
121 122 4.251103 TCTTGATGAGGGCACTAGTAGA 57.749 45.455 3.59 0.00 0.00 2.59
122 123 5.344743 TTTCTTGATGAGGGCACTAGTAG 57.655 43.478 0.00 0.00 0.00 2.57
123 124 5.755409 TTTTCTTGATGAGGGCACTAGTA 57.245 39.130 0.00 0.00 0.00 1.82
124 125 4.640771 TTTTCTTGATGAGGGCACTAGT 57.359 40.909 0.00 0.00 0.00 2.57
144 145 1.977854 GGAAGGGATTGGGCTGTTTTT 59.022 47.619 0.00 0.00 0.00 1.94
145 146 1.149923 AGGAAGGGATTGGGCTGTTTT 59.850 47.619 0.00 0.00 0.00 2.43
146 147 0.786435 AGGAAGGGATTGGGCTGTTT 59.214 50.000 0.00 0.00 0.00 2.83
147 148 1.566231 CTAGGAAGGGATTGGGCTGTT 59.434 52.381 0.00 0.00 0.00 3.16
148 149 1.216990 CTAGGAAGGGATTGGGCTGT 58.783 55.000 0.00 0.00 0.00 4.40
149 150 1.141858 GTCTAGGAAGGGATTGGGCTG 59.858 57.143 0.00 0.00 0.00 4.85
150 151 1.010170 AGTCTAGGAAGGGATTGGGCT 59.990 52.381 0.00 0.00 0.00 5.19
151 152 1.418264 GAGTCTAGGAAGGGATTGGGC 59.582 57.143 0.00 0.00 0.00 5.36
152 153 2.764269 TGAGTCTAGGAAGGGATTGGG 58.236 52.381 0.00 0.00 0.00 4.12
153 154 4.844349 TTTGAGTCTAGGAAGGGATTGG 57.156 45.455 0.00 0.00 0.00 3.16
199 200 9.575868 CATCTAAATGAGTTCTAGGTACTCCTA 57.424 37.037 17.72 6.15 41.02 2.94
200 201 8.282982 TCATCTAAATGAGTTCTAGGTACTCCT 58.717 37.037 17.72 9.42 41.02 3.69
201 202 8.466617 TCATCTAAATGAGTTCTAGGTACTCC 57.533 38.462 17.72 6.18 41.02 3.85
233 234 9.412460 TGCTATAAAAGATGAATGAGACCAAAT 57.588 29.630 0.00 0.00 0.00 2.32
234 235 8.677300 GTGCTATAAAAGATGAATGAGACCAAA 58.323 33.333 0.00 0.00 0.00 3.28
235 236 7.011389 CGTGCTATAAAAGATGAATGAGACCAA 59.989 37.037 0.00 0.00 0.00 3.67
236 237 6.479990 CGTGCTATAAAAGATGAATGAGACCA 59.520 38.462 0.00 0.00 0.00 4.02
237 238 6.564873 GCGTGCTATAAAAGATGAATGAGACC 60.565 42.308 0.00 0.00 0.00 3.85
238 239 6.358762 GCGTGCTATAAAAGATGAATGAGAC 58.641 40.000 0.00 0.00 0.00 3.36
239 240 5.175673 CGCGTGCTATAAAAGATGAATGAGA 59.824 40.000 0.00 0.00 0.00 3.27
240 241 5.050769 ACGCGTGCTATAAAAGATGAATGAG 60.051 40.000 12.93 0.00 0.00 2.90
241 242 4.808895 ACGCGTGCTATAAAAGATGAATGA 59.191 37.500 12.93 0.00 0.00 2.57
242 243 4.900182 CACGCGTGCTATAAAAGATGAATG 59.100 41.667 28.16 0.00 0.00 2.67
243 244 4.570772 ACACGCGTGCTATAAAAGATGAAT 59.429 37.500 37.35 10.61 0.00 2.57
244 245 3.930229 ACACGCGTGCTATAAAAGATGAA 59.070 39.130 37.35 0.00 0.00 2.57
245 246 3.305897 CACACGCGTGCTATAAAAGATGA 59.694 43.478 37.35 0.00 36.06 2.92
246 247 3.597324 CACACGCGTGCTATAAAAGATG 58.403 45.455 37.35 20.35 36.06 2.90
247 248 3.925688 CACACGCGTGCTATAAAAGAT 57.074 42.857 37.35 12.57 36.06 2.40
259 260 4.865761 ACGTCAGCACACACGCGT 62.866 61.111 5.58 5.58 39.73 6.01
260 261 4.339809 CACGTCAGCACACACGCG 62.340 66.667 3.53 3.53 39.73 6.01
261 262 2.932083 CTCACGTCAGCACACACGC 61.932 63.158 0.00 0.00 39.73 5.34
262 263 1.145759 AACTCACGTCAGCACACACG 61.146 55.000 0.00 0.00 41.90 4.49
263 264 1.847818 TAACTCACGTCAGCACACAC 58.152 50.000 0.00 0.00 0.00 3.82
264 265 2.812358 ATAACTCACGTCAGCACACA 57.188 45.000 0.00 0.00 0.00 3.72
265 266 5.779806 AAATATAACTCACGTCAGCACAC 57.220 39.130 0.00 0.00 0.00 3.82
266 267 7.223971 GGAATAAATATAACTCACGTCAGCACA 59.776 37.037 0.00 0.00 0.00 4.57
267 268 7.223971 TGGAATAAATATAACTCACGTCAGCAC 59.776 37.037 0.00 0.00 0.00 4.40
268 269 7.269316 TGGAATAAATATAACTCACGTCAGCA 58.731 34.615 0.00 0.00 0.00 4.41
269 270 7.569591 GCTGGAATAAATATAACTCACGTCAGC 60.570 40.741 0.00 0.00 34.63 4.26
270 271 7.653713 AGCTGGAATAAATATAACTCACGTCAG 59.346 37.037 0.00 0.00 0.00 3.51
271 272 7.497595 AGCTGGAATAAATATAACTCACGTCA 58.502 34.615 0.00 0.00 0.00 4.35
272 273 7.948278 AGCTGGAATAAATATAACTCACGTC 57.052 36.000 0.00 0.00 0.00 4.34
273 274 9.826574 TTTAGCTGGAATAAATATAACTCACGT 57.173 29.630 0.00 0.00 0.00 4.49
286 287 9.691362 GATTGTTTTTCAGTTTAGCTGGAATAA 57.309 29.630 0.00 0.00 41.99 1.40
287 288 8.303876 GGATTGTTTTTCAGTTTAGCTGGAATA 58.696 33.333 0.00 0.00 41.99 1.75
288 289 7.154656 GGATTGTTTTTCAGTTTAGCTGGAAT 58.845 34.615 0.00 0.00 41.99 3.01
289 290 6.462347 GGGATTGTTTTTCAGTTTAGCTGGAA 60.462 38.462 0.00 0.00 45.08 3.53
290 291 5.010617 GGGATTGTTTTTCAGTTTAGCTGGA 59.989 40.000 0.00 0.00 45.08 3.86
291 292 5.230182 GGGATTGTTTTTCAGTTTAGCTGG 58.770 41.667 0.00 0.00 45.08 4.85
292 293 4.917415 CGGGATTGTTTTTCAGTTTAGCTG 59.083 41.667 0.00 0.00 46.34 4.24
293 294 4.583073 ACGGGATTGTTTTTCAGTTTAGCT 59.417 37.500 0.00 0.00 0.00 3.32
294 295 4.866921 ACGGGATTGTTTTTCAGTTTAGC 58.133 39.130 0.00 0.00 0.00 3.09
295 296 5.458015 GGACGGGATTGTTTTTCAGTTTAG 58.542 41.667 0.00 0.00 0.00 1.85
296 297 4.278919 GGGACGGGATTGTTTTTCAGTTTA 59.721 41.667 0.00 0.00 0.00 2.01
297 298 3.069016 GGGACGGGATTGTTTTTCAGTTT 59.931 43.478 0.00 0.00 0.00 2.66
298 299 2.626266 GGGACGGGATTGTTTTTCAGTT 59.374 45.455 0.00 0.00 0.00 3.16
299 300 2.235891 GGGACGGGATTGTTTTTCAGT 58.764 47.619 0.00 0.00 0.00 3.41
300 301 1.544246 GGGGACGGGATTGTTTTTCAG 59.456 52.381 0.00 0.00 0.00 3.02
301 302 1.146152 AGGGGACGGGATTGTTTTTCA 59.854 47.619 0.00 0.00 0.00 2.69
302 303 1.816835 GAGGGGACGGGATTGTTTTTC 59.183 52.381 0.00 0.00 0.00 2.29
303 304 1.884928 CGAGGGGACGGGATTGTTTTT 60.885 52.381 0.00 0.00 0.00 1.94
304 305 0.322187 CGAGGGGACGGGATTGTTTT 60.322 55.000 0.00 0.00 0.00 2.43
305 306 1.196104 TCGAGGGGACGGGATTGTTT 61.196 55.000 0.00 0.00 0.00 2.83
306 307 0.981277 ATCGAGGGGACGGGATTGTT 60.981 55.000 0.00 0.00 0.00 2.83
307 308 0.105862 TATCGAGGGGACGGGATTGT 60.106 55.000 0.00 0.00 0.00 2.71
308 309 1.267121 ATATCGAGGGGACGGGATTG 58.733 55.000 0.00 0.00 0.00 2.67
309 310 2.913603 TATATCGAGGGGACGGGATT 57.086 50.000 0.00 0.00 0.00 3.01
310 311 4.213513 GTTATATATCGAGGGGACGGGAT 58.786 47.826 0.00 0.00 0.00 3.85
311 312 3.010472 TGTTATATATCGAGGGGACGGGA 59.990 47.826 0.00 0.00 0.00 5.14
312 313 3.359033 TGTTATATATCGAGGGGACGGG 58.641 50.000 0.00 0.00 0.00 5.28
313 314 4.267536 TCTGTTATATATCGAGGGGACGG 58.732 47.826 0.00 0.00 0.00 4.79
314 315 6.452494 AATCTGTTATATATCGAGGGGACG 57.548 41.667 0.00 0.00 0.00 4.79
315 316 8.746530 TGTTAATCTGTTATATATCGAGGGGAC 58.253 37.037 0.00 0.00 0.00 4.46
316 317 8.888836 TGTTAATCTGTTATATATCGAGGGGA 57.111 34.615 0.00 0.00 0.00 4.81
317 318 8.198109 CCTGTTAATCTGTTATATATCGAGGGG 58.802 40.741 0.00 0.00 0.00 4.79
318 319 8.198109 CCCTGTTAATCTGTTATATATCGAGGG 58.802 40.741 0.00 0.00 0.00 4.30
319 320 7.707035 GCCCTGTTAATCTGTTATATATCGAGG 59.293 40.741 0.00 0.00 0.00 4.63
320 321 7.432545 CGCCCTGTTAATCTGTTATATATCGAG 59.567 40.741 0.00 0.00 0.00 4.04
321 322 7.255569 CGCCCTGTTAATCTGTTATATATCGA 58.744 38.462 0.00 0.00 0.00 3.59
322 323 6.019801 GCGCCCTGTTAATCTGTTATATATCG 60.020 42.308 0.00 0.00 0.00 2.92
323 324 6.258068 GGCGCCCTGTTAATCTGTTATATATC 59.742 42.308 18.11 0.00 0.00 1.63
324 325 6.113411 GGCGCCCTGTTAATCTGTTATATAT 58.887 40.000 18.11 0.00 0.00 0.86
325 326 5.484715 GGCGCCCTGTTAATCTGTTATATA 58.515 41.667 18.11 0.00 0.00 0.86
326 327 4.324267 GGCGCCCTGTTAATCTGTTATAT 58.676 43.478 18.11 0.00 0.00 0.86
327 328 3.495453 GGGCGCCCTGTTAATCTGTTATA 60.495 47.826 38.76 0.00 0.00 0.98
328 329 2.572290 GGCGCCCTGTTAATCTGTTAT 58.428 47.619 18.11 0.00 0.00 1.89
329 330 1.407712 GGGCGCCCTGTTAATCTGTTA 60.408 52.381 38.76 0.00 0.00 2.41
330 331 0.679960 GGGCGCCCTGTTAATCTGTT 60.680 55.000 38.76 0.00 0.00 3.16
331 332 1.077716 GGGCGCCCTGTTAATCTGT 60.078 57.895 38.76 0.00 0.00 3.41
332 333 1.224592 AGGGCGCCCTGTTAATCTG 59.775 57.895 46.71 0.00 46.22 2.90
333 334 3.741325 AGGGCGCCCTGTTAATCT 58.259 55.556 46.71 21.50 46.22 2.40
345 346 3.724914 GAGAAAGAGGGCGAGGGCG 62.725 68.421 0.00 0.00 41.24 6.13
346 347 2.188207 GAGAAAGAGGGCGAGGGC 59.812 66.667 0.00 0.00 38.90 5.19
347 348 2.496817 CGAGAAAGAGGGCGAGGG 59.503 66.667 0.00 0.00 0.00 4.30
348 349 1.605058 TTCCGAGAAAGAGGGCGAGG 61.605 60.000 0.00 0.00 0.00 4.63
349 350 0.246635 TTTCCGAGAAAGAGGGCGAG 59.753 55.000 0.00 0.00 0.00 5.03
350 351 0.682852 TTTTCCGAGAAAGAGGGCGA 59.317 50.000 0.00 0.00 0.00 5.54
351 352 1.519408 TTTTTCCGAGAAAGAGGGCG 58.481 50.000 0.00 0.00 0.00 6.13
367 368 5.277345 CGGCGGAAAGAAGATCGATATTTTT 60.277 40.000 6.74 4.69 0.00 1.94
368 369 4.211374 CGGCGGAAAGAAGATCGATATTTT 59.789 41.667 6.74 0.00 0.00 1.82
369 370 3.741344 CGGCGGAAAGAAGATCGATATTT 59.259 43.478 6.74 0.34 0.00 1.40
370 371 3.243771 ACGGCGGAAAGAAGATCGATATT 60.244 43.478 13.24 4.67 0.00 1.28
371 372 2.296471 ACGGCGGAAAGAAGATCGATAT 59.704 45.455 13.24 0.00 0.00 1.63
372 373 1.679680 ACGGCGGAAAGAAGATCGATA 59.320 47.619 13.24 0.00 0.00 2.92
373 374 0.460311 ACGGCGGAAAGAAGATCGAT 59.540 50.000 13.24 0.00 0.00 3.59
374 375 0.457853 CACGGCGGAAAGAAGATCGA 60.458 55.000 13.24 0.00 0.00 3.59
375 376 1.999051 CACGGCGGAAAGAAGATCG 59.001 57.895 13.24 0.00 0.00 3.69
376 377 1.706287 GGCACGGCGGAAAGAAGATC 61.706 60.000 13.24 0.00 0.00 2.75
377 378 1.745489 GGCACGGCGGAAAGAAGAT 60.745 57.895 13.24 0.00 0.00 2.40
378 379 2.358247 GGCACGGCGGAAAGAAGA 60.358 61.111 13.24 0.00 0.00 2.87
397 398 3.934391 GACGAAGCTGGGGTCACGG 62.934 68.421 7.07 0.00 0.00 4.94
398 399 2.432628 GACGAAGCTGGGGTCACG 60.433 66.667 7.07 0.00 0.00 4.35
399 400 0.321653 ATTGACGAAGCTGGGGTCAC 60.322 55.000 12.66 0.00 40.14 3.67
400 401 1.066430 GTATTGACGAAGCTGGGGTCA 60.066 52.381 9.85 9.85 38.80 4.02
401 402 1.207329 AGTATTGACGAAGCTGGGGTC 59.793 52.381 0.00 5.39 0.00 4.46
402 403 1.207329 GAGTATTGACGAAGCTGGGGT 59.793 52.381 0.00 0.00 0.00 4.95
403 404 1.473434 GGAGTATTGACGAAGCTGGGG 60.473 57.143 0.00 0.00 0.00 4.96
404 405 1.482593 AGGAGTATTGACGAAGCTGGG 59.517 52.381 0.00 0.00 0.00 4.45
405 406 2.482142 GGAGGAGTATTGACGAAGCTGG 60.482 54.545 0.00 0.00 0.00 4.85
406 407 2.166459 TGGAGGAGTATTGACGAAGCTG 59.834 50.000 0.00 0.00 0.00 4.24
407 408 2.457598 TGGAGGAGTATTGACGAAGCT 58.542 47.619 0.00 0.00 0.00 3.74
408 409 2.961526 TGGAGGAGTATTGACGAAGC 57.038 50.000 0.00 0.00 0.00 3.86
409 410 5.269505 AGATTGGAGGAGTATTGACGAAG 57.730 43.478 0.00 0.00 0.00 3.79
410 411 6.683110 GCTTAGATTGGAGGAGTATTGACGAA 60.683 42.308 0.00 0.00 0.00 3.85
411 412 5.221263 GCTTAGATTGGAGGAGTATTGACGA 60.221 44.000 0.00 0.00 0.00 4.20
412 413 4.985409 GCTTAGATTGGAGGAGTATTGACG 59.015 45.833 0.00 0.00 0.00 4.35
413 414 4.985409 CGCTTAGATTGGAGGAGTATTGAC 59.015 45.833 0.00 0.00 0.00 3.18
414 415 4.893524 TCGCTTAGATTGGAGGAGTATTGA 59.106 41.667 0.00 0.00 0.00 2.57
415 416 4.985409 GTCGCTTAGATTGGAGGAGTATTG 59.015 45.833 0.00 0.00 0.00 1.90
416 417 4.896482 AGTCGCTTAGATTGGAGGAGTATT 59.104 41.667 0.00 0.00 0.00 1.89
417 418 4.279671 CAGTCGCTTAGATTGGAGGAGTAT 59.720 45.833 0.00 0.00 33.49 2.12
418 419 3.632604 CAGTCGCTTAGATTGGAGGAGTA 59.367 47.826 0.00 0.00 33.49 2.59
419 420 2.428890 CAGTCGCTTAGATTGGAGGAGT 59.571 50.000 0.00 0.00 33.49 3.85
420 421 2.801342 GCAGTCGCTTAGATTGGAGGAG 60.801 54.545 0.00 0.00 37.11 3.69
421 422 1.137086 GCAGTCGCTTAGATTGGAGGA 59.863 52.381 0.00 0.00 37.11 3.71
422 423 1.576356 GCAGTCGCTTAGATTGGAGG 58.424 55.000 0.00 0.00 37.11 4.30
441 442 4.838486 GAGGACAGCCGCGACGAG 62.838 72.222 8.23 0.00 39.96 4.18
452 453 0.904865 AGCGAATCCACTGGAGGACA 60.905 55.000 3.62 0.00 41.30 4.02
454 455 0.250234 CAAGCGAATCCACTGGAGGA 59.750 55.000 3.62 0.00 43.01 3.71
487 488 0.179161 CGAACAGATCCGAGCGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
490 491 0.029433 CATCGAACAGATCCGAGCGA 59.971 55.000 0.00 0.00 37.52 4.93
491 492 1.543941 GCATCGAACAGATCCGAGCG 61.544 60.000 0.00 0.00 37.52 5.03
492 493 1.218230 GGCATCGAACAGATCCGAGC 61.218 60.000 0.00 0.00 37.52 5.03
508 510 1.202758 ACAAGAACAGGAATGACGGCA 60.203 47.619 0.00 0.00 0.00 5.69
531 533 1.337118 AGATCAGAAGGAGATCCGGC 58.663 55.000 0.00 0.00 42.19 6.13
532 534 5.016173 AGATTAGATCAGAAGGAGATCCGG 58.984 45.833 0.00 0.00 42.19 5.14
533 535 6.350110 GGAAGATTAGATCAGAAGGAGATCCG 60.350 46.154 0.00 0.00 42.19 4.18
542 544 7.391554 CACAACAAAGGGAAGATTAGATCAGAA 59.608 37.037 0.00 0.00 0.00 3.02
543 545 6.881065 CACAACAAAGGGAAGATTAGATCAGA 59.119 38.462 0.00 0.00 0.00 3.27
546 548 7.554118 TCATCACAACAAAGGGAAGATTAGATC 59.446 37.037 0.00 0.00 0.00 2.75
547 549 7.405292 TCATCACAACAAAGGGAAGATTAGAT 58.595 34.615 0.00 0.00 0.00 1.98
548 550 6.778821 TCATCACAACAAAGGGAAGATTAGA 58.221 36.000 0.00 0.00 0.00 2.10
549 551 7.452880 TTCATCACAACAAAGGGAAGATTAG 57.547 36.000 0.00 0.00 0.00 1.73
550 552 7.831691 TTTCATCACAACAAAGGGAAGATTA 57.168 32.000 0.00 0.00 0.00 1.75
551 553 6.729690 TTTCATCACAACAAAGGGAAGATT 57.270 33.333 0.00 0.00 0.00 2.40
552 554 6.494491 TGATTTCATCACAACAAAGGGAAGAT 59.506 34.615 0.00 0.00 33.59 2.40
553 555 5.832595 TGATTTCATCACAACAAAGGGAAGA 59.167 36.000 0.00 0.00 33.59 2.87
554 556 6.088016 TGATTTCATCACAACAAAGGGAAG 57.912 37.500 0.00 0.00 33.59 3.46
555 557 6.669125 ATGATTTCATCACAACAAAGGGAA 57.331 33.333 0.00 0.00 43.01 3.97
580 582 2.641815 ACCTTGAGCCAAGACAGATCTT 59.358 45.455 14.33 0.00 46.63 2.40
581 583 2.235898 GACCTTGAGCCAAGACAGATCT 59.764 50.000 14.33 0.00 43.42 2.75
582 584 2.626840 GACCTTGAGCCAAGACAGATC 58.373 52.381 14.33 0.00 43.42 2.75
592 594 1.522580 GCCAGATCGACCTTGAGCC 60.523 63.158 0.00 0.00 0.00 4.70
595 597 2.367202 GGGGCCAGATCGACCTTGA 61.367 63.158 4.39 0.00 0.00 3.02
596 598 1.915078 AAGGGGCCAGATCGACCTTG 61.915 60.000 4.39 0.00 39.89 3.61
624 626 4.464951 CCCCGCACCATATAGAATACTACA 59.535 45.833 0.00 0.00 0.00 2.74
625 627 4.142004 CCCCCGCACCATATAGAATACTAC 60.142 50.000 0.00 0.00 0.00 2.73
647 649 6.810182 GCATCAAAATACATATGAAGATGCCC 59.190 38.462 22.52 9.31 46.78 5.36
658 660 8.664992 TGAGGGTAATAGGCATCAAAATACATA 58.335 33.333 0.00 0.00 0.00 2.29
667 672 5.450818 AAGTTTGAGGGTAATAGGCATCA 57.549 39.130 0.00 0.00 0.00 3.07
672 677 5.476945 ACAGCAAAAGTTTGAGGGTAATAGG 59.523 40.000 7.96 0.00 40.55 2.57
674 679 6.969993 AACAGCAAAAGTTTGAGGGTAATA 57.030 33.333 7.96 0.00 40.55 0.98
690 695 9.151471 GATACTATCTGAAAACAGTAACAGCAA 57.849 33.333 0.00 0.00 0.00 3.91
703 708 6.544928 TGCTCTTGGTGATACTATCTGAAA 57.455 37.500 0.00 0.00 0.00 2.69
704 709 6.544928 TTGCTCTTGGTGATACTATCTGAA 57.455 37.500 0.00 0.00 0.00 3.02
705 710 6.324770 TGATTGCTCTTGGTGATACTATCTGA 59.675 38.462 0.00 0.00 0.00 3.27
706 711 6.519382 TGATTGCTCTTGGTGATACTATCTG 58.481 40.000 0.00 0.00 0.00 2.90
707 712 6.737720 TGATTGCTCTTGGTGATACTATCT 57.262 37.500 0.00 0.00 0.00 1.98
708 713 7.118971 GGAATGATTGCTCTTGGTGATACTATC 59.881 40.741 0.00 0.00 0.00 2.08
709 714 6.939163 GGAATGATTGCTCTTGGTGATACTAT 59.061 38.462 0.00 0.00 0.00 2.12
710 715 6.100279 AGGAATGATTGCTCTTGGTGATACTA 59.900 38.462 0.00 0.00 0.00 1.82
711 716 5.104193 AGGAATGATTGCTCTTGGTGATACT 60.104 40.000 0.00 0.00 0.00 2.12
712 717 5.128919 AGGAATGATTGCTCTTGGTGATAC 58.871 41.667 0.00 0.00 0.00 2.24
713 718 5.371526 GAGGAATGATTGCTCTTGGTGATA 58.628 41.667 17.91 0.00 43.83 2.15
714 719 4.205587 GAGGAATGATTGCTCTTGGTGAT 58.794 43.478 17.91 0.00 43.83 3.06
715 720 3.614092 GAGGAATGATTGCTCTTGGTGA 58.386 45.455 17.91 0.00 43.83 4.02
785 790 9.341078 ACAAGCAAGATCAACCAAATTTTTATT 57.659 25.926 0.00 0.00 0.00 1.40
786 791 8.907222 ACAAGCAAGATCAACCAAATTTTTAT 57.093 26.923 0.00 0.00 0.00 1.40
787 792 8.729805 AACAAGCAAGATCAACCAAATTTTTA 57.270 26.923 0.00 0.00 0.00 1.52
788 793 7.465781 CGAACAAGCAAGATCAACCAAATTTTT 60.466 33.333 0.00 0.00 0.00 1.94
789 794 6.018832 CGAACAAGCAAGATCAACCAAATTTT 60.019 34.615 0.00 0.00 0.00 1.82
790 795 5.463061 CGAACAAGCAAGATCAACCAAATTT 59.537 36.000 0.00 0.00 0.00 1.82
791 796 4.984161 CGAACAAGCAAGATCAACCAAATT 59.016 37.500 0.00 0.00 0.00 1.82
792 797 4.037923 ACGAACAAGCAAGATCAACCAAAT 59.962 37.500 0.00 0.00 0.00 2.32
793 798 3.380004 ACGAACAAGCAAGATCAACCAAA 59.620 39.130 0.00 0.00 0.00 3.28
794 799 2.948979 ACGAACAAGCAAGATCAACCAA 59.051 40.909 0.00 0.00 0.00 3.67
795 800 2.571212 ACGAACAAGCAAGATCAACCA 58.429 42.857 0.00 0.00 0.00 3.67
796 801 3.626028 AACGAACAAGCAAGATCAACC 57.374 42.857 0.00 0.00 0.00 3.77
797 802 5.514914 TGAAAAACGAACAAGCAAGATCAAC 59.485 36.000 0.00 0.00 0.00 3.18
798 803 5.645624 TGAAAAACGAACAAGCAAGATCAA 58.354 33.333 0.00 0.00 0.00 2.57
799 804 5.242069 TGAAAAACGAACAAGCAAGATCA 57.758 34.783 0.00 0.00 0.00 2.92
800 805 6.567769 TTTGAAAAACGAACAAGCAAGATC 57.432 33.333 0.00 0.00 0.00 2.75
801 806 6.761117 GTTTTGAAAAACGAACAAGCAAGAT 58.239 32.000 3.10 0.00 38.89 2.40
802 807 6.147038 GTTTTGAAAAACGAACAAGCAAGA 57.853 33.333 3.10 0.00 38.89 3.02
818 823 8.243426 GCCTGAACATATCTGTATTGTTTTGAA 58.757 33.333 0.00 0.00 33.36 2.69
819 824 7.413988 CGCCTGAACATATCTGTATTGTTTTGA 60.414 37.037 0.00 0.00 33.36 2.69
820 825 6.688385 CGCCTGAACATATCTGTATTGTTTTG 59.312 38.462 0.00 0.00 33.36 2.44
821 826 6.597672 TCGCCTGAACATATCTGTATTGTTTT 59.402 34.615 0.00 0.00 33.36 2.43
822 827 6.112734 TCGCCTGAACATATCTGTATTGTTT 58.887 36.000 0.00 0.00 33.36 2.83
823 828 5.670485 TCGCCTGAACATATCTGTATTGTT 58.330 37.500 0.00 0.00 33.36 2.83
824 829 5.163405 ACTCGCCTGAACATATCTGTATTGT 60.163 40.000 0.00 0.00 33.36 2.71
825 830 5.292765 ACTCGCCTGAACATATCTGTATTG 58.707 41.667 0.00 0.00 33.36 1.90
826 831 5.509840 GGACTCGCCTGAACATATCTGTATT 60.510 44.000 0.00 0.00 33.36 1.89
827 832 4.021894 GGACTCGCCTGAACATATCTGTAT 60.022 45.833 0.00 0.00 33.36 2.29
828 833 3.318275 GGACTCGCCTGAACATATCTGTA 59.682 47.826 0.00 0.00 33.36 2.74
829 834 2.101582 GGACTCGCCTGAACATATCTGT 59.898 50.000 0.00 0.00 37.12 3.41
830 835 2.748605 GGACTCGCCTGAACATATCTG 58.251 52.381 0.00 0.00 0.00 2.90
849 854 1.091771 CGAGGGCAATACACTGCAGG 61.092 60.000 19.93 9.66 44.52 4.85
852 857 3.813596 CCGAGGGCAATACACTGC 58.186 61.111 0.00 0.00 41.85 4.40
863 868 2.803956 TGGTACTATATCAGCCGAGGG 58.196 52.381 0.00 0.00 0.00 4.30
864 869 5.450688 GCTATTGGTACTATATCAGCCGAGG 60.451 48.000 0.00 0.00 0.00 4.63
868 877 6.071334 TGACTGCTATTGGTACTATATCAGCC 60.071 42.308 14.05 8.08 29.20 4.85
885 1042 9.290988 TGGAAACATAAATTTAACTGACTGCTA 57.709 29.630 1.21 0.00 33.40 3.49
918 1109 3.719268 ACAGTGAACCCAGATGCATAA 57.281 42.857 0.00 0.00 0.00 1.90
927 1118 2.369532 GGGTGTTAGTACAGTGAACCCA 59.630 50.000 15.18 0.00 36.22 4.51
928 1119 2.369532 TGGGTGTTAGTACAGTGAACCC 59.630 50.000 13.85 13.85 36.55 4.11
947 1138 8.256605 TGAAATACACACATGGGAATAATTTGG 58.743 33.333 0.00 0.00 0.00 3.28
1003 1194 3.428999 CCAATTTCTGCTGCTCCAATCAG 60.429 47.826 0.00 0.00 34.79 2.90
1053 1248 0.034767 CACAGGATGGCATGACACCT 60.035 55.000 1.45 10.36 43.62 4.00
1054 1249 1.033746 CCACAGGATGGCATGACACC 61.034 60.000 1.45 7.83 43.24 4.16
1092 1287 1.073897 GCTTGGGAACACCTCTGCT 59.926 57.895 0.00 0.00 42.67 4.24
1140 1338 3.111853 TCAGGAAGCAACAGTGTACAG 57.888 47.619 0.00 0.00 0.00 2.74
1163 1361 2.092753 AGTAGCACCTCCAACATCATGG 60.093 50.000 0.00 0.00 42.12 3.66
1195 1393 3.217626 GGAAGCGGAGAATGGATTTGAT 58.782 45.455 0.00 0.00 0.00 2.57
1221 1419 4.704833 GCCCAAGAGCGGCAGACA 62.705 66.667 1.45 0.00 46.27 3.41
1272 1470 0.107456 CCTTAGAGATGGCCATGCGT 59.893 55.000 26.56 7.34 0.00 5.24
1274 1472 1.881498 GCTCCTTAGAGATGGCCATGC 60.881 57.143 26.56 15.21 43.39 4.06
1329 1527 0.179018 AGTTCAGTCCTGTTGTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
1389 1605 2.844804 GTCGACGGTGAAGAGTAAATCG 59.155 50.000 0.00 0.00 0.00 3.34
1539 1755 0.685097 TTGGTGGAGTACAGTGAGGC 59.315 55.000 0.00 0.00 0.00 4.70
1553 1769 2.095853 GCAGTGGAACGATATGTTGGTG 59.904 50.000 0.00 0.00 45.86 4.17
1554 1770 2.356135 GCAGTGGAACGATATGTTGGT 58.644 47.619 0.00 0.00 45.86 3.67
1575 1791 0.740737 GGGCATCAAATCCAAGTCCG 59.259 55.000 0.00 0.00 0.00 4.79
1581 1797 1.140852 CTAGTCCGGGCATCAAATCCA 59.859 52.381 9.71 0.00 0.00 3.41
1658 1874 0.750850 AGGCGTGTACACTTCACACT 59.249 50.000 23.01 9.23 43.32 3.55
1704 1923 1.376037 GAAAGGCACTCCTCCACCG 60.376 63.158 0.00 0.00 43.40 4.94
1760 1979 2.098831 GGTACTTTCTGCGTCGCCC 61.099 63.158 15.88 1.61 0.00 6.13
1770 1989 1.002142 GCAAACACCGGTGGTACTTTC 60.002 52.381 36.47 15.38 32.11 2.62
1902 2121 0.254178 CTGATGTCCAGAAGGGTGGG 59.746 60.000 0.00 0.00 45.78 4.61
2097 2322 4.578516 TCAAGCAAATATATTCCCACGTGG 59.421 41.667 28.26 28.26 0.00 4.94
2206 2431 3.741476 CTGCTCAAACTGGCCGGC 61.741 66.667 21.18 21.18 0.00 6.13
2275 2506 2.613026 TGTGTTTGTGTCTCGGTGAT 57.387 45.000 0.00 0.00 0.00 3.06
2289 2520 0.405585 AAGCAGGCCTGGTATGTGTT 59.594 50.000 36.27 18.09 40.87 3.32
2354 2594 4.714632 TGGCTAGCTATCCATTGGTTTAC 58.285 43.478 15.72 0.00 0.00 2.01
2355 2595 5.316167 CATGGCTAGCTATCCATTGGTTTA 58.684 41.667 23.53 0.00 40.88 2.01
2399 2641 8.606040 AAATTTAAACCATGTCTGATTTGGTG 57.394 30.769 13.23 0.00 42.85 4.17
2413 2659 7.044798 AGCTAGTTGCACAAAAATTTAAACCA 58.955 30.769 0.00 0.00 45.94 3.67
2417 2669 7.594758 CAGCTAGCTAGTTGCACAAAAATTTAA 59.405 33.333 22.47 0.00 45.94 1.52
2422 2674 4.488126 CAGCTAGCTAGTTGCACAAAAA 57.512 40.909 22.47 0.00 45.94 1.94
2436 2688 4.334759 TCAAAATCAATCTGAGCAGCTAGC 59.665 41.667 6.62 6.62 46.19 3.42
2511 2764 2.506231 TCCACAACAGTGACCTTTGGTA 59.494 45.455 0.00 0.00 35.25 3.25
2545 2798 4.670992 CGACGAGATTTGAAGTACTTCGGA 60.671 45.833 26.35 18.82 42.28 4.55
2576 2829 2.112928 ACAATGCGTGTGCCAGGA 59.887 55.556 0.00 0.00 39.72 3.86
2588 2841 1.453155 AAGCTAGAACCGCCACAATG 58.547 50.000 0.00 0.00 0.00 2.82
2632 2885 0.905357 TGGCTGAGCTTCTCTTACCC 59.095 55.000 3.72 0.00 0.00 3.69
2720 2973 3.743567 TTGTGTGTCGTGTTACCAAAC 57.256 42.857 0.00 0.00 36.07 2.93
2946 3199 7.255801 GGGACAATTTAGTTCCAACATGAAAGA 60.256 37.037 0.00 0.00 37.12 2.52
2986 3242 2.038557 GTCATGTCCCTACCACAACACT 59.961 50.000 0.00 0.00 0.00 3.55
3060 3317 1.022451 TATTGGCCGCTTCGAACACC 61.022 55.000 0.00 0.00 0.00 4.16
3067 3324 4.110036 AGACAAAAATATTGGCCGCTTC 57.890 40.909 0.00 0.00 0.00 3.86
3225 3483 5.460646 ACAAACAGGAAAGTGCATTATTCG 58.539 37.500 0.00 0.00 0.00 3.34
3333 3591 0.734889 AATCTTTGCCATCGCCTTCG 59.265 50.000 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.