Multiple sequence alignment - TraesCS1B01G411500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G411500 chr1B 100.000 4069 0 0 1 4069 637808594 637804526 0.000000e+00 7515.0
1 TraesCS1B01G411500 chr1D 91.440 1215 69 12 2090 3281 462670570 462669368 0.000000e+00 1635.0
2 TraesCS1B01G411500 chr1D 84.626 1431 115 43 700 2076 462671837 462670458 0.000000e+00 1327.0
3 TraesCS1B01G411500 chr1D 92.510 761 54 2 3284 4041 462669090 462668330 0.000000e+00 1086.0
4 TraesCS1B01G411500 chr1D 89.722 360 27 1 6 365 462672806 462672457 6.200000e-123 451.0
5 TraesCS1B01G411500 chr1D 85.022 227 14 13 450 664 462672367 462672149 3.190000e-51 213.0
6 TraesCS1B01G411500 chr6D 81.087 497 67 18 3591 4069 418647984 418647497 4.970000e-99 372.0
7 TraesCS1B01G411500 chr4B 79.920 498 63 18 3591 4069 537803983 537804462 8.430000e-87 331.0
8 TraesCS1B01G411500 chr7D 77.197 478 79 19 3609 4069 40597758 40598222 6.750000e-63 252.0
9 TraesCS1B01G411500 chr7D 82.692 208 32 4 3863 4069 100340357 100340561 8.980000e-42 182.0
10 TraesCS1B01G411500 chr7D 76.608 342 58 12 3745 4069 621984136 621983800 6.990000e-38 169.0
11 TraesCS1B01G411500 chr4A 76.730 477 81 17 3609 4068 647400038 647399575 5.260000e-59 239.0
12 TraesCS1B01G411500 chr7B 87.719 171 21 0 3898 4068 323486291 323486121 2.480000e-47 200.0
13 TraesCS1B01G411500 chr7A 74.659 513 80 30 3591 4069 620367840 620367344 8.980000e-42 182.0
14 TraesCS1B01G411500 chr5B 74.569 464 87 17 3627 4069 227519738 227520191 1.500000e-39 174.0
15 TraesCS1B01G411500 chr4D 82.759 203 22 11 3863 4059 498629048 498628853 6.990000e-38 169.0
16 TraesCS1B01G411500 chr6B 89.286 56 5 1 3591 3646 600383549 600383603 7.300000e-08 69.4
17 TraesCS1B01G411500 chr6A 100.000 29 0 0 3550 3578 547286738 547286710 2.000000e-03 54.7
18 TraesCS1B01G411500 chr3B 100.000 29 0 0 3550 3578 571988789 571988761 2.000000e-03 54.7
19 TraesCS1B01G411500 chr2D 100.000 29 0 0 3550 3578 164535186 164535158 2.000000e-03 54.7
20 TraesCS1B01G411500 chr2A 100.000 29 0 0 3550 3578 186362291 186362319 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G411500 chr1B 637804526 637808594 4068 True 7515.0 7515 100.000 1 4069 1 chr1B.!!$R1 4068
1 TraesCS1B01G411500 chr1D 462668330 462672806 4476 True 942.4 1635 88.664 6 4041 5 chr1D.!!$R1 4035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1298 0.107410 ATAAAAGGCGCATCACCCGA 60.107 50.0 10.83 0.0 0.0 5.14 F
1597 1948 0.034337 TCGTTGGGTTGGTCTGCTAC 59.966 55.0 0.00 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 2727 0.179000 CACCTCCAGCATGTACTCCC 59.821 60.0 0.0 0.0 0.00 4.30 R
3375 4034 0.033208 TGGATTGCCCTTAAGCCTGG 60.033 55.0 0.0 0.0 37.04 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.600255 GGAGATGGTTCGGGTATGCG 60.600 60.000 0.00 0.00 0.00 4.73
35 36 3.131396 GTTCGGGTATGCGATCTTTGAT 58.869 45.455 0.00 0.00 0.00 2.57
62 63 4.465886 ACAAGTCATCTACGATAGAGGCT 58.534 43.478 0.00 0.00 38.38 4.58
83 84 0.608035 TTTCTCCGTGGCATTGGTCC 60.608 55.000 8.37 0.00 0.00 4.46
117 118 1.459592 CATGACGACTTTCGAACCACC 59.540 52.381 0.00 0.00 43.74 4.61
132 133 4.560716 CGAACCACCTGATTTAGTGTCAGA 60.561 45.833 4.79 0.00 44.57 3.27
174 175 2.637383 GCGACCCGTCCTGAAGACT 61.637 63.158 0.00 0.00 43.91 3.24
175 176 1.213013 CGACCCGTCCTGAAGACTG 59.787 63.158 0.00 0.00 43.91 3.51
186 187 4.035675 GTCCTGAAGACTGAGTTTGTTTGG 59.964 45.833 0.00 0.00 42.69 3.28
192 193 4.589908 AGACTGAGTTTGTTTGGTTGTCT 58.410 39.130 0.00 0.00 0.00 3.41
195 196 4.764823 ACTGAGTTTGTTTGGTTGTCTGAA 59.235 37.500 0.00 0.00 0.00 3.02
203 204 4.104102 TGTTTGGTTGTCTGAAGACCCTAT 59.896 41.667 7.96 0.00 44.15 2.57
296 297 5.404466 AAAAGAGAGAGAGAGATGGTGTG 57.596 43.478 0.00 0.00 0.00 3.82
306 307 2.711009 AGAGATGGTGTGGTTTTCAGGA 59.289 45.455 0.00 0.00 0.00 3.86
307 308 3.331889 AGAGATGGTGTGGTTTTCAGGAT 59.668 43.478 0.00 0.00 0.00 3.24
319 320 7.234371 TGTGGTTTTCAGGATATTTTGAATCCA 59.766 33.333 15.28 15.28 44.62 3.41
327 328 5.948162 AGGATATTTTGAATCCATCATCGGG 59.052 40.000 5.01 0.00 44.62 5.14
340 341 4.697352 CCATCATCGGGAGCCTAATAAAAG 59.303 45.833 0.00 0.00 0.00 2.27
352 353 4.793028 GCCTAATAAAAGCAGCCGAAATCC 60.793 45.833 0.00 0.00 0.00 3.01
365 366 3.278574 CCGAAATCCCATTCTGCTTACA 58.721 45.455 0.00 0.00 0.00 2.41
366 367 3.694072 CCGAAATCCCATTCTGCTTACAA 59.306 43.478 0.00 0.00 0.00 2.41
367 368 4.201950 CCGAAATCCCATTCTGCTTACAAG 60.202 45.833 0.00 0.00 0.00 3.16
368 369 4.635765 CGAAATCCCATTCTGCTTACAAGA 59.364 41.667 0.00 0.00 0.00 3.02
369 370 5.220739 CGAAATCCCATTCTGCTTACAAGAG 60.221 44.000 0.00 0.00 0.00 2.85
370 371 4.851639 ATCCCATTCTGCTTACAAGAGT 57.148 40.909 0.00 0.00 0.00 3.24
371 372 5.957771 ATCCCATTCTGCTTACAAGAGTA 57.042 39.130 0.00 0.00 0.00 2.59
372 373 5.957771 TCCCATTCTGCTTACAAGAGTAT 57.042 39.130 0.00 0.00 0.00 2.12
373 374 7.618019 ATCCCATTCTGCTTACAAGAGTATA 57.382 36.000 0.00 0.00 0.00 1.47
375 376 8.721133 TCCCATTCTGCTTACAAGAGTATATA 57.279 34.615 0.00 0.00 0.00 0.86
376 377 9.326489 TCCCATTCTGCTTACAAGAGTATATAT 57.674 33.333 0.00 0.00 0.00 0.86
383 384 9.988815 CTGCTTACAAGAGTATATATTTCCAGT 57.011 33.333 0.00 0.00 0.00 4.00
443 444 2.633509 GCTTGCTGCCCTCACAAGG 61.634 63.158 0.00 0.00 40.87 3.61
444 445 1.228367 CTTGCTGCCCTCACAAGGT 60.228 57.895 0.00 0.00 41.59 3.50
445 446 1.521450 CTTGCTGCCCTCACAAGGTG 61.521 60.000 0.00 0.00 41.59 4.00
446 447 3.368571 GCTGCCCTCACAAGGTGC 61.369 66.667 0.00 0.00 41.59 5.01
447 448 2.113774 CTGCCCTCACAAGGTGCA 59.886 61.111 7.21 7.21 42.80 4.57
448 449 2.113774 TGCCCTCACAAGGTGCAG 59.886 61.111 0.00 0.00 41.25 4.41
482 488 2.166270 GCAGTTGGCCGAAGAAGAG 58.834 57.895 0.00 0.00 36.11 2.85
516 522 0.991770 CGCGTTGCTTTCCAGTTTCG 60.992 55.000 0.00 0.00 0.00 3.46
594 604 4.326227 ACACCTCCCCCACGCCTA 62.326 66.667 0.00 0.00 0.00 3.93
606 621 2.505337 CGCCTACGTACGCAGCAA 60.505 61.111 16.72 0.00 33.53 3.91
610 625 1.445410 CTACGTACGCAGCAAGGCA 60.445 57.895 16.72 0.00 0.00 4.75
612 627 3.788766 CGTACGCAGCAAGGCACC 61.789 66.667 0.52 0.00 0.00 5.01
613 628 3.431725 GTACGCAGCAAGGCACCC 61.432 66.667 0.00 0.00 0.00 4.61
618 633 3.371063 CAGCAAGGCACCCTGCTG 61.371 66.667 22.31 22.31 44.28 4.41
619 634 3.573229 AGCAAGGCACCCTGCTGA 61.573 61.111 11.98 0.00 44.28 4.26
679 984 1.612442 TCCCCTTCTGTTCCCTCCG 60.612 63.158 0.00 0.00 0.00 4.63
680 985 1.918800 CCCCTTCTGTTCCCTCCGT 60.919 63.158 0.00 0.00 0.00 4.69
683 988 1.597461 CTTCTGTTCCCTCCGTCCC 59.403 63.158 0.00 0.00 0.00 4.46
684 989 0.905337 CTTCTGTTCCCTCCGTCCCT 60.905 60.000 0.00 0.00 0.00 4.20
685 990 0.903454 TTCTGTTCCCTCCGTCCCTC 60.903 60.000 0.00 0.00 0.00 4.30
686 991 2.284405 TGTTCCCTCCGTCCCTCC 60.284 66.667 0.00 0.00 0.00 4.30
687 992 2.039137 GTTCCCTCCGTCCCTCCT 59.961 66.667 0.00 0.00 0.00 3.69
688 993 2.059190 GTTCCCTCCGTCCCTCCTC 61.059 68.421 0.00 0.00 0.00 3.71
689 994 3.312989 TTCCCTCCGTCCCTCCTCC 62.313 68.421 0.00 0.00 0.00 4.30
690 995 4.862823 CCCTCCGTCCCTCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
691 996 3.756783 CCTCCGTCCCTCCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
692 997 2.443016 CTCCGTCCCTCCTCCCTG 60.443 72.222 0.00 0.00 0.00 4.45
693 998 4.075793 TCCGTCCCTCCTCCCTGG 62.076 72.222 0.00 0.00 37.10 4.45
694 999 4.400251 CCGTCCCTCCTCCCTGGT 62.400 72.222 0.00 0.00 37.07 4.00
695 1000 2.284699 CGTCCCTCCTCCCTGGTT 60.285 66.667 0.00 0.00 37.07 3.67
698 1003 0.547954 GTCCCTCCTCCCTGGTTTCT 60.548 60.000 0.00 0.00 37.07 2.52
720 1025 2.867109 TCTTGGCCAAGAAGAAGGAG 57.133 50.000 39.82 16.78 43.79 3.69
722 1027 1.074566 CTTGGCCAAGAAGAAGGAGGT 59.925 52.381 37.60 0.00 40.79 3.85
759 1064 2.183555 GGTTCTGACGCCTACGGG 59.816 66.667 0.00 0.00 46.04 5.28
769 1074 3.642503 CCTACGGGCCCACACCAA 61.643 66.667 24.92 0.00 0.00 3.67
771 1076 4.338710 TACGGGCCCACACCAAGC 62.339 66.667 24.92 0.00 0.00 4.01
792 1097 0.532862 CGTCCCATGCTTTCGCCTAT 60.533 55.000 0.00 0.00 34.43 2.57
793 1098 1.680338 GTCCCATGCTTTCGCCTATT 58.320 50.000 0.00 0.00 34.43 1.73
794 1099 2.805295 CGTCCCATGCTTTCGCCTATTA 60.805 50.000 0.00 0.00 34.43 0.98
795 1100 2.548480 GTCCCATGCTTTCGCCTATTAC 59.452 50.000 0.00 0.00 34.43 1.89
797 1102 2.549754 CCCATGCTTTCGCCTATTACAG 59.450 50.000 0.00 0.00 34.43 2.74
800 1105 4.814234 CCATGCTTTCGCCTATTACAGTAA 59.186 41.667 0.00 0.00 34.43 2.24
802 1107 6.183360 CCATGCTTTCGCCTATTACAGTAAAA 60.183 38.462 0.00 0.00 34.43 1.52
803 1108 6.804770 TGCTTTCGCCTATTACAGTAAAAA 57.195 33.333 0.00 0.00 34.43 1.94
804 1109 6.837992 TGCTTTCGCCTATTACAGTAAAAAG 58.162 36.000 0.00 3.28 34.43 2.27
805 1110 5.737757 GCTTTCGCCTATTACAGTAAAAAGC 59.262 40.000 16.57 16.57 39.22 3.51
806 1111 6.403309 GCTTTCGCCTATTACAGTAAAAAGCT 60.403 38.462 20.87 1.17 41.56 3.74
807 1112 7.201582 GCTTTCGCCTATTACAGTAAAAAGCTA 60.202 37.037 20.87 6.39 41.56 3.32
836 1141 8.918961 AATCTTATCGTCTCAGTTAAGTCTTG 57.081 34.615 0.00 0.00 0.00 3.02
851 1156 9.886132 AGTTAAGTCTTGACGGAATAAATATGT 57.114 29.630 2.13 0.00 0.00 2.29
863 1168 8.819974 ACGGAATAAATATGTAGTTTTACCGTG 58.180 33.333 0.00 0.00 38.13 4.94
874 1179 8.730970 TGTAGTTTTACCGTGAAAATAATTGC 57.269 30.769 0.00 0.00 31.29 3.56
875 1180 6.921332 AGTTTTACCGTGAAAATAATTGCG 57.079 33.333 0.00 0.00 31.29 4.85
913 1218 1.947456 GAAGAAAACGCAACTGGGAGT 59.053 47.619 0.18 0.00 0.00 3.85
915 1220 3.418684 AGAAAACGCAACTGGGAGTAT 57.581 42.857 0.18 0.00 0.00 2.12
916 1221 4.546829 AGAAAACGCAACTGGGAGTATA 57.453 40.909 0.18 0.00 0.00 1.47
917 1222 5.099042 AGAAAACGCAACTGGGAGTATAT 57.901 39.130 0.18 0.00 0.00 0.86
918 1223 6.229936 AGAAAACGCAACTGGGAGTATATA 57.770 37.500 0.18 0.00 0.00 0.86
919 1224 6.281405 AGAAAACGCAACTGGGAGTATATAG 58.719 40.000 0.18 0.00 0.00 1.31
920 1225 5.864418 AAACGCAACTGGGAGTATATAGA 57.136 39.130 0.18 0.00 0.00 1.98
921 1226 5.864418 AACGCAACTGGGAGTATATAGAA 57.136 39.130 0.18 0.00 0.00 2.10
922 1227 6.420913 AACGCAACTGGGAGTATATAGAAT 57.579 37.500 0.18 0.00 0.00 2.40
923 1228 6.026947 ACGCAACTGGGAGTATATAGAATC 57.973 41.667 0.18 0.00 0.00 2.52
947 1252 2.281517 TCGAAACACAGGCTCGAAAAA 58.718 42.857 0.00 0.00 38.56 1.94
990 1297 1.531149 CTATAAAAGGCGCATCACCCG 59.469 52.381 10.83 0.00 0.00 5.28
991 1298 0.107410 ATAAAAGGCGCATCACCCGA 60.107 50.000 10.83 0.00 0.00 5.14
1003 1310 3.432588 ACCCGAGACGACGCTCTG 61.433 66.667 14.40 9.52 32.71 3.35
1005 1312 2.098680 CCGAGACGACGCTCTGTC 59.901 66.667 14.40 0.00 44.53 3.51
1007 1314 2.392181 CGAGACGACGCTCTGTCCT 61.392 63.158 14.40 0.00 45.23 3.85
1032 1343 4.348495 TCCTCCTCCCACCCCACC 62.348 72.222 0.00 0.00 0.00 4.61
1075 1386 5.129815 CACTCCCATCAATCCAAATCCAAAT 59.870 40.000 0.00 0.00 0.00 2.32
1122 1433 2.046892 CCTGCCGACTGGTTCCTG 60.047 66.667 0.00 0.00 37.67 3.86
1155 1466 2.983930 GAGGCTCGACACTCAGCGT 61.984 63.158 0.00 0.00 36.41 5.07
1260 1583 2.039951 CCCCGAGTACCTTCCCCA 59.960 66.667 0.00 0.00 0.00 4.96
1395 1718 0.437295 CCGCGTTCAGGTAAGTTTCG 59.563 55.000 4.92 0.00 0.00 3.46
1406 1729 0.108041 TAAGTTTCGTGCCCCGGATC 60.108 55.000 0.73 0.00 37.11 3.36
1407 1730 1.838073 AAGTTTCGTGCCCCGGATCT 61.838 55.000 0.73 0.00 37.11 2.75
1408 1731 2.106683 GTTTCGTGCCCCGGATCTG 61.107 63.158 0.73 0.00 37.11 2.90
1409 1732 3.969250 TTTCGTGCCCCGGATCTGC 62.969 63.158 0.73 0.00 37.11 4.26
1436 1766 3.345808 TGCGCCGTGTTGCTCTTC 61.346 61.111 4.18 0.00 0.00 2.87
1451 1796 2.289694 GCTCTTCTGCTTGGAGGTGTTA 60.290 50.000 0.00 0.00 0.00 2.41
1489 1837 2.586792 GCAGACAGCGGAATCCCT 59.413 61.111 0.00 0.00 0.00 4.20
1518 1866 1.375268 GCCTGTGCACAGAGGACTC 60.375 63.158 41.50 21.13 46.59 3.36
1519 1867 2.052779 CCTGTGCACAGAGGACTCA 58.947 57.895 41.50 8.06 46.59 3.41
1520 1868 0.394192 CCTGTGCACAGAGGACTCAA 59.606 55.000 41.50 7.22 46.59 3.02
1533 1881 2.557056 AGGACTCAACGTCTTCAATCGA 59.443 45.455 0.00 0.00 42.44 3.59
1545 1893 5.274718 GTCTTCAATCGATTCGCTCTCTTA 58.725 41.667 7.92 0.00 0.00 2.10
1561 1909 1.961394 TCTTAGCGATGGCGAGGTAAT 59.039 47.619 6.36 0.00 46.35 1.89
1562 1910 2.364324 TCTTAGCGATGGCGAGGTAATT 59.636 45.455 6.36 0.00 46.35 1.40
1564 1912 4.219944 TCTTAGCGATGGCGAGGTAATTAT 59.780 41.667 6.36 0.00 46.35 1.28
1565 1913 3.402628 AGCGATGGCGAGGTAATTATT 57.597 42.857 0.00 0.00 46.35 1.40
1566 1914 3.067106 AGCGATGGCGAGGTAATTATTG 58.933 45.455 0.00 0.00 46.35 1.90
1568 1916 3.684788 GCGATGGCGAGGTAATTATTGAT 59.315 43.478 0.00 0.00 40.82 2.57
1570 1918 5.671329 GCGATGGCGAGGTAATTATTGATTC 60.671 44.000 0.00 0.00 40.82 2.52
1571 1919 5.444613 CGATGGCGAGGTAATTATTGATTCG 60.445 44.000 0.00 0.00 40.82 3.34
1578 1929 6.587990 CGAGGTAATTATTGATTCGCTCTCAT 59.412 38.462 0.00 0.00 0.00 2.90
1579 1930 7.201393 CGAGGTAATTATTGATTCGCTCTCATC 60.201 40.741 0.00 0.00 0.00 2.92
1594 1945 0.605319 TCATCGTTGGGTTGGTCTGC 60.605 55.000 0.00 0.00 0.00 4.26
1595 1946 0.606401 CATCGTTGGGTTGGTCTGCT 60.606 55.000 0.00 0.00 0.00 4.24
1596 1947 0.981183 ATCGTTGGGTTGGTCTGCTA 59.019 50.000 0.00 0.00 0.00 3.49
1597 1948 0.034337 TCGTTGGGTTGGTCTGCTAC 59.966 55.000 0.00 0.00 0.00 3.58
1598 1949 0.034896 CGTTGGGTTGGTCTGCTACT 59.965 55.000 0.00 0.00 0.00 2.57
1599 1950 1.809684 GTTGGGTTGGTCTGCTACTC 58.190 55.000 0.00 0.00 0.00 2.59
1600 1951 1.348036 GTTGGGTTGGTCTGCTACTCT 59.652 52.381 0.00 0.00 0.00 3.24
1601 1952 0.976641 TGGGTTGGTCTGCTACTCTG 59.023 55.000 0.00 0.00 0.00 3.35
1602 1953 0.391793 GGGTTGGTCTGCTACTCTGC 60.392 60.000 0.00 0.00 0.00 4.26
1603 1954 0.610687 GGTTGGTCTGCTACTCTGCT 59.389 55.000 0.00 0.00 0.00 4.24
1604 1955 1.002544 GGTTGGTCTGCTACTCTGCTT 59.997 52.381 0.00 0.00 0.00 3.91
1605 1956 2.233922 GGTTGGTCTGCTACTCTGCTTA 59.766 50.000 0.00 0.00 0.00 3.09
1606 1957 3.306780 GGTTGGTCTGCTACTCTGCTTAA 60.307 47.826 0.00 0.00 0.00 1.85
1614 1965 7.281100 GGTCTGCTACTCTGCTTAATTTGTTAT 59.719 37.037 0.00 0.00 0.00 1.89
1618 1969 6.693113 GCTACTCTGCTTAATTTGTTATTGCC 59.307 38.462 0.00 0.00 0.00 4.52
1625 1976 5.220209 GCTTAATTTGTTATTGCCGCTGAAC 60.220 40.000 0.00 0.00 0.00 3.18
1640 1991 2.146342 CTGAACATGAACGAGGTGCTT 58.854 47.619 0.00 0.00 0.00 3.91
1648 1999 2.948979 TGAACGAGGTGCTTTGATTTGT 59.051 40.909 0.00 0.00 0.00 2.83
1654 2006 3.290710 AGGTGCTTTGATTTGTCACAGT 58.709 40.909 0.00 0.00 0.00 3.55
1666 2018 2.904011 GTCACAGTGACTACGAGAGG 57.096 55.000 24.23 0.00 43.73 3.69
1679 2031 1.533469 CGAGAGGGAGTTTCCGGTGT 61.533 60.000 0.00 0.00 37.43 4.16
1682 2034 1.228154 AGGGAGTTTCCGGTGTTGC 60.228 57.895 0.00 0.00 37.43 4.17
1707 2059 0.451783 GCAACCGGAAGCATGTAAGG 59.548 55.000 9.46 0.00 0.00 2.69
1714 2066 3.242739 CCGGAAGCATGTAAGGAAATTCG 60.243 47.826 0.00 0.00 0.00 3.34
1715 2067 3.374058 CGGAAGCATGTAAGGAAATTCGT 59.626 43.478 0.00 0.00 0.00 3.85
1725 2077 9.061610 CATGTAAGGAAATTCGTGAACAATTAC 57.938 33.333 7.77 0.00 0.00 1.89
1744 2096 8.402472 ACAATTACTTTGTCAGAACAATTTCGA 58.598 29.630 0.00 0.00 45.55 3.71
1745 2097 9.398170 CAATTACTTTGTCAGAACAATTTCGAT 57.602 29.630 0.00 0.00 44.59 3.59
1754 2106 4.616802 CAGAACAATTTCGATTCGTTTGGG 59.383 41.667 5.89 0.00 36.78 4.12
1765 2117 4.555708 CGATTCGTTTGGGTGTTCATTTCA 60.556 41.667 0.00 0.00 0.00 2.69
1766 2118 3.980646 TCGTTTGGGTGTTCATTTCAG 57.019 42.857 0.00 0.00 0.00 3.02
1808 2160 0.735632 GTCTCAGCAGCGACAAGGAG 60.736 60.000 0.00 0.00 29.96 3.69
1842 2200 3.075134 GGGGGAATCTCCTATCAAGCATT 59.925 47.826 0.00 0.00 36.57 3.56
1848 2206 4.736126 TCTCCTATCAAGCATTCGAACA 57.264 40.909 0.00 0.00 0.00 3.18
1849 2207 5.084818 TCTCCTATCAAGCATTCGAACAA 57.915 39.130 0.00 0.00 0.00 2.83
1897 2258 2.556287 GCAGGTGCAGCACGTTAC 59.444 61.111 18.13 9.82 41.59 2.50
1934 2295 4.344865 GCGGTCAAGGCCAAGGGA 62.345 66.667 5.01 0.00 0.00 4.20
1935 2296 2.045926 CGGTCAAGGCCAAGGGAG 60.046 66.667 5.01 0.00 0.00 4.30
1937 2298 1.002011 GGTCAAGGCCAAGGGAGAC 60.002 63.158 5.01 3.06 0.00 3.36
1938 2299 1.376037 GTCAAGGCCAAGGGAGACG 60.376 63.158 5.01 0.00 0.00 4.18
1939 2300 2.747855 CAAGGCCAAGGGAGACGC 60.748 66.667 5.01 0.00 0.00 5.19
1940 2301 2.930562 AAGGCCAAGGGAGACGCT 60.931 61.111 5.01 0.00 0.00 5.07
1942 2303 3.706373 GGCCAAGGGAGACGCTGA 61.706 66.667 0.00 0.00 0.00 4.26
1944 2305 2.125350 CCAAGGGAGACGCTGAGC 60.125 66.667 0.00 0.00 0.00 4.26
1946 2307 1.447489 CAAGGGAGACGCTGAGCTG 60.447 63.158 1.78 0.00 0.00 4.24
1948 2309 1.882989 AAGGGAGACGCTGAGCTGAC 61.883 60.000 1.78 0.00 0.00 3.51
1949 2310 2.202544 GGAGACGCTGAGCTGACG 60.203 66.667 1.78 0.00 0.00 4.35
1950 2311 2.691771 GGAGACGCTGAGCTGACGA 61.692 63.158 1.78 0.00 0.00 4.20
1951 2312 1.210413 GAGACGCTGAGCTGACGAA 59.790 57.895 1.78 0.00 0.00 3.85
1952 2313 0.796491 GAGACGCTGAGCTGACGAAG 60.796 60.000 1.78 0.00 0.00 3.79
1953 2314 1.803519 GACGCTGAGCTGACGAAGG 60.804 63.158 1.78 0.00 0.00 3.46
1954 2315 2.507992 CGCTGAGCTGACGAAGGG 60.508 66.667 1.78 0.00 0.00 3.95
1955 2316 2.817396 GCTGAGCTGACGAAGGGC 60.817 66.667 0.00 0.00 0.00 5.19
1957 2318 2.989253 TGAGCTGACGAAGGGCGA 60.989 61.111 0.00 0.00 44.57 5.54
1958 2319 2.202676 GAGCTGACGAAGGGCGAG 60.203 66.667 0.00 0.00 44.57 5.03
1959 2320 2.676822 AGCTGACGAAGGGCGAGA 60.677 61.111 0.00 0.00 44.57 4.04
1960 2321 2.202676 GCTGACGAAGGGCGAGAG 60.203 66.667 0.00 0.00 44.57 3.20
1990 2351 3.470888 CGAGGCGGGGATCAAGGT 61.471 66.667 0.00 0.00 0.00 3.50
1992 2353 3.447025 GAGGCGGGGATCAAGGTCG 62.447 68.421 0.00 0.00 0.00 4.79
2083 2444 4.735132 CGAACTGGCGAAGGGCGA 62.735 66.667 0.00 0.00 44.92 5.54
2117 2478 4.403976 GAGGCGTCGATCAAGGTC 57.596 61.111 0.00 0.00 0.00 3.85
2118 2479 1.586564 GAGGCGTCGATCAAGGTCG 60.587 63.158 0.00 0.00 42.74 4.79
2123 2484 3.207354 TCGATCAAGGTCGAGGGC 58.793 61.111 0.57 0.00 44.87 5.19
2124 2485 2.107141 CGATCAAGGTCGAGGGCC 59.893 66.667 0.00 0.00 44.06 5.80
2125 2486 2.721167 CGATCAAGGTCGAGGGCCA 61.721 63.158 6.18 0.00 44.06 5.36
2126 2487 1.144936 GATCAAGGTCGAGGGCCAG 59.855 63.158 6.18 0.00 0.00 4.85
2127 2488 2.317149 GATCAAGGTCGAGGGCCAGG 62.317 65.000 6.18 0.00 0.00 4.45
2128 2489 4.785453 CAAGGTCGAGGGCCAGGC 62.785 72.222 6.18 1.26 0.00 4.85
2140 2501 4.069232 CCAGGCCGAGCTGACGAA 62.069 66.667 0.00 0.00 35.09 3.85
2141 2502 2.507992 CAGGCCGAGCTGACGAAG 60.508 66.667 0.00 0.00 35.09 3.79
2142 2503 3.764466 AGGCCGAGCTGACGAAGG 61.764 66.667 0.00 0.00 35.09 3.46
2143 2504 4.821589 GGCCGAGCTGACGAAGGG 62.822 72.222 0.00 0.00 35.09 3.95
2146 2507 4.116328 CGAGCTGACGAAGGGCGA 62.116 66.667 0.00 0.00 44.57 5.54
2147 2508 2.202676 GAGCTGACGAAGGGCGAG 60.203 66.667 0.00 0.00 44.57 5.03
2148 2509 2.676822 AGCTGACGAAGGGCGAGA 60.677 61.111 0.00 0.00 44.57 4.04
2149 2510 2.202676 GCTGACGAAGGGCGAGAG 60.203 66.667 0.00 0.00 44.57 3.20
2228 2589 4.683334 GACAAGGCCGCACGCAAC 62.683 66.667 0.00 0.00 40.31 4.17
2276 2637 1.965219 CCAGGACTTCTTCGTCGGT 59.035 57.895 0.00 0.00 34.75 4.69
2285 2646 3.438087 ACTTCTTCGTCGGTTCGATTCTA 59.562 43.478 0.00 0.00 38.42 2.10
2298 2659 2.030185 TCGATTCTAGTAAGATGCGGCC 60.030 50.000 0.00 0.00 32.58 6.13
2318 2679 4.368808 CCAGTTGCCGTTGTCGCG 62.369 66.667 0.00 0.00 35.54 5.87
2326 2687 4.657824 CGTTGTCGCGGGAGGTGT 62.658 66.667 6.13 0.00 0.00 4.16
2374 2735 1.612442 GAGGCAGTGGGGGAGTACA 60.612 63.158 0.00 0.00 0.00 2.90
2402 2763 3.211963 GGTGATGGATGCGGTGGC 61.212 66.667 0.00 0.00 40.52 5.01
2546 2914 1.399714 CACCCTATCCACAGCGTCTA 58.600 55.000 0.00 0.00 0.00 2.59
2564 2932 2.572095 TACCGTTCGCCAGATGCCAG 62.572 60.000 0.00 0.00 36.24 4.85
2597 2965 1.663702 CGTCGACGCCCTGTTCTTT 60.664 57.895 26.59 0.00 0.00 2.52
2604 2972 1.081175 GCCCTGTTCTTTTGCTCGC 60.081 57.895 0.00 0.00 0.00 5.03
2729 3097 0.770557 AGCCCTTTCAGTACCCACCA 60.771 55.000 0.00 0.00 0.00 4.17
2735 3103 3.557264 CCTTTCAGTACCCACCAACTCTC 60.557 52.174 0.00 0.00 0.00 3.20
2741 3109 0.178903 ACCCACCAACTCTCCAGCTA 60.179 55.000 0.00 0.00 0.00 3.32
2750 3118 1.025812 CTCTCCAGCTATTCGTCGGT 58.974 55.000 0.00 0.00 0.00 4.69
2755 3123 1.076533 CAGCTATTCGTCGGTGCGTT 61.077 55.000 0.00 0.00 0.00 4.84
2756 3124 0.389426 AGCTATTCGTCGGTGCGTTT 60.389 50.000 0.00 0.00 0.00 3.60
2771 3139 0.863144 CGTTTCGTGTGGGAAATCGT 59.137 50.000 0.00 0.00 38.12 3.73
2780 3148 4.000988 GTGTGGGAAATCGTGTTAGTCAT 58.999 43.478 0.00 0.00 0.00 3.06
2798 3166 3.572255 GTCATTACTTTGCAAGACCCCAA 59.428 43.478 0.00 0.00 0.00 4.12
2820 3188 0.967662 TGTGTTTGGGCATGGTGATG 59.032 50.000 0.00 0.00 0.00 3.07
2859 3227 2.071778 ACACTTTGACATGCAGGGTT 57.928 45.000 2.31 0.00 0.00 4.11
2921 3289 1.620822 GCAGGGTCAACATGTTTCCT 58.379 50.000 21.50 18.57 0.00 3.36
2936 3304 3.181423 TGTTTCCTGAGCCCCAGTTTTAT 60.181 43.478 3.45 0.00 41.33 1.40
2991 3359 1.406205 GCAGACCTCTAGAAACTGGGC 60.406 57.143 16.68 7.76 0.00 5.36
3044 3412 8.689061 TCACTAAATTGAATGATGAAGGATTGG 58.311 33.333 0.00 0.00 0.00 3.16
3061 3443 7.750947 AGGATTGGTGTTCCTTACTTATAGT 57.249 36.000 0.00 0.00 40.84 2.12
3096 3478 4.311816 ACTGCATTTGGTGAGACAAAAG 57.688 40.909 0.00 0.00 42.91 2.27
3120 3504 4.466828 CTGAACCGAATGTTGTGTCAATC 58.533 43.478 0.00 0.00 37.29 2.67
3147 3531 2.899044 GCACGGCGGCAAACTAACA 61.899 57.895 13.24 0.00 0.00 2.41
3154 3538 1.586154 CGGCAAACTAACAGGGCCTG 61.586 60.000 31.62 31.62 42.43 4.85
3179 3563 9.412460 TGTCCAAATGCTGAGATAAATCTATTT 57.588 29.630 0.00 0.00 37.25 1.40
3196 3580 6.522625 TCTATTTGCAAATCCGGAATCAAA 57.477 33.333 27.28 16.03 0.00 2.69
3197 3581 6.563422 TCTATTTGCAAATCCGGAATCAAAG 58.437 36.000 27.28 14.93 0.00 2.77
3198 3582 4.599047 TTTGCAAATCCGGAATCAAAGT 57.401 36.364 9.01 0.00 0.00 2.66
3199 3583 3.848272 TGCAAATCCGGAATCAAAGTC 57.152 42.857 9.01 0.00 0.00 3.01
3200 3584 2.491693 TGCAAATCCGGAATCAAAGTCC 59.508 45.455 9.01 0.00 0.00 3.85
3201 3585 2.755103 GCAAATCCGGAATCAAAGTCCT 59.245 45.455 9.01 0.00 32.53 3.85
3202 3586 3.428045 GCAAATCCGGAATCAAAGTCCTG 60.428 47.826 9.01 0.00 32.53 3.86
3203 3587 3.721087 AATCCGGAATCAAAGTCCTGT 57.279 42.857 9.01 0.00 32.53 4.00
3204 3588 3.721087 ATCCGGAATCAAAGTCCTGTT 57.279 42.857 9.01 0.00 32.53 3.16
3205 3589 2.778299 TCCGGAATCAAAGTCCTGTTG 58.222 47.619 0.00 0.00 32.53 3.33
3206 3590 2.105821 TCCGGAATCAAAGTCCTGTTGT 59.894 45.455 0.00 0.00 32.53 3.32
3213 3597 3.728845 TCAAAGTCCTGTTGTAGCTGTC 58.271 45.455 0.00 0.00 0.00 3.51
3289 3948 2.615912 ACTGCAAAAAGACAGAGAGTGC 59.384 45.455 0.00 0.00 37.35 4.40
3297 3956 7.361201 GCAAAAAGACAGAGAGTGCATTATACA 60.361 37.037 0.00 0.00 0.00 2.29
3325 3984 3.712091 AACGAGATGGGACGAATCTAC 57.288 47.619 0.00 0.00 34.50 2.59
3398 4057 1.555967 GCTTAAGGGCAATCCAACCA 58.444 50.000 4.29 0.00 38.24 3.67
3412 4071 0.464735 CAACCAGGTCGACCCAAACA 60.465 55.000 30.82 0.00 36.42 2.83
3413 4072 0.464916 AACCAGGTCGACCCAAACAC 60.465 55.000 30.82 4.15 36.42 3.32
3414 4073 1.959226 CCAGGTCGACCCAAACACG 60.959 63.158 30.82 10.46 36.42 4.49
3415 4074 1.227438 CAGGTCGACCCAAACACGT 60.227 57.895 30.82 6.96 36.42 4.49
3416 4075 0.812412 CAGGTCGACCCAAACACGTT 60.812 55.000 30.82 6.14 36.42 3.99
3487 4148 3.057736 CCTCGTCTTGTCCGTTTTCTCTA 60.058 47.826 0.00 0.00 0.00 2.43
3490 4151 3.324117 GTCTTGTCCGTTTTCTCTACCC 58.676 50.000 0.00 0.00 0.00 3.69
3505 4166 1.195442 TACCCATGACGCCCAACTGA 61.195 55.000 0.00 0.00 0.00 3.41
3510 4171 1.131126 CATGACGCCCAACTGAATGAC 59.869 52.381 0.00 0.00 0.00 3.06
3517 4178 2.806434 CCCAACTGAATGACCCATTGA 58.194 47.619 0.00 0.00 33.90 2.57
3520 4181 4.223477 CCCAACTGAATGACCCATTGATTT 59.777 41.667 0.00 0.00 33.90 2.17
3526 4187 6.891361 ACTGAATGACCCATTGATTTGTCATA 59.109 34.615 4.59 0.00 45.14 2.15
3530 4191 7.722949 ATGACCCATTGATTTGTCATACTTT 57.277 32.000 2.38 0.00 44.33 2.66
3533 4194 8.087750 TGACCCATTGATTTGTCATACTTTTTC 58.912 33.333 0.00 0.00 33.09 2.29
3581 4242 9.439500 CAACCAAATAAACAAATGAATGATCCT 57.561 29.630 0.00 0.00 0.00 3.24
3594 4255 4.202556 TGAATGATCCTGAGGGACAAAACA 60.203 41.667 0.00 0.00 45.43 2.83
3610 4271 8.442384 GGGACAAAACATTGCACATTATTAAAG 58.558 33.333 0.00 0.00 0.00 1.85
3673 4334 9.699703 AACGCATAGTAACAACCAATAAATTTT 57.300 25.926 0.00 0.00 0.00 1.82
3747 4408 4.519213 TGGTTTCCTAATATGGGTTCACG 58.481 43.478 0.00 0.00 0.00 4.35
3769 4430 6.092122 CACGTATGCTCAACCAAATCTTCTTA 59.908 38.462 0.00 0.00 0.00 2.10
3802 4463 5.156355 GTGAGTTGTTCGATCATGCATTTT 58.844 37.500 0.00 0.00 0.00 1.82
3807 4468 7.191551 AGTTGTTCGATCATGCATTTTATGAG 58.808 34.615 0.00 0.00 37.91 2.90
3843 4505 1.370414 CAAACTTTGCCGCTCCACG 60.370 57.895 0.00 0.00 43.15 4.94
3856 4518 4.056125 CCACGCTCGACCTCAGCA 62.056 66.667 0.00 0.00 36.61 4.41
3880 4542 7.284489 GCATTTACACCCTTGGTTAATAGATGA 59.716 37.037 0.00 0.00 31.02 2.92
3902 4564 4.371855 TGTCATCACGTTCATCCTCTAC 57.628 45.455 0.00 0.00 0.00 2.59
3903 4565 3.761752 TGTCATCACGTTCATCCTCTACA 59.238 43.478 0.00 0.00 0.00 2.74
3955 4617 3.459232 TCACCTCTCACAAAGTGTCAG 57.541 47.619 0.00 0.00 34.79 3.51
3978 4640 1.474077 CTCCAACATTTAGCAGGGTGC 59.526 52.381 0.00 0.00 45.46 5.01
3994 4656 1.102978 GTGCCGAACAATAGCCCATT 58.897 50.000 0.00 0.00 0.00 3.16
4002 4664 4.261322 CGAACAATAGCCCATTGAGATTGG 60.261 45.833 13.93 0.00 45.99 3.16
4041 4703 3.319689 GCTCCACATCCTTCCTAGTACTC 59.680 52.174 0.00 0.00 0.00 2.59
4042 4704 4.798882 CTCCACATCCTTCCTAGTACTCT 58.201 47.826 0.00 0.00 0.00 3.24
4043 4705 4.794334 TCCACATCCTTCCTAGTACTCTC 58.206 47.826 0.00 0.00 0.00 3.20
4044 4706 4.479056 TCCACATCCTTCCTAGTACTCTCT 59.521 45.833 0.00 0.00 0.00 3.10
4045 4707 4.825085 CCACATCCTTCCTAGTACTCTCTC 59.175 50.000 0.00 0.00 0.00 3.20
4046 4708 4.513692 CACATCCTTCCTAGTACTCTCTCG 59.486 50.000 0.00 0.00 0.00 4.04
4047 4709 4.164604 ACATCCTTCCTAGTACTCTCTCGT 59.835 45.833 0.00 0.00 0.00 4.18
4048 4710 4.840716 TCCTTCCTAGTACTCTCTCGTT 57.159 45.455 0.00 0.00 0.00 3.85
4049 4711 4.768583 TCCTTCCTAGTACTCTCTCGTTC 58.231 47.826 0.00 0.00 0.00 3.95
4050 4712 4.470664 TCCTTCCTAGTACTCTCTCGTTCT 59.529 45.833 0.00 0.00 0.00 3.01
4051 4713 5.045724 TCCTTCCTAGTACTCTCTCGTTCTT 60.046 44.000 0.00 0.00 0.00 2.52
4052 4714 5.648960 CCTTCCTAGTACTCTCTCGTTCTTT 59.351 44.000 0.00 0.00 0.00 2.52
4053 4715 6.403855 CCTTCCTAGTACTCTCTCGTTCTTTG 60.404 46.154 0.00 0.00 0.00 2.77
4054 4716 4.942483 TCCTAGTACTCTCTCGTTCTTTGG 59.058 45.833 0.00 0.00 0.00 3.28
4055 4717 3.579335 AGTACTCTCTCGTTCTTTGGC 57.421 47.619 0.00 0.00 0.00 4.52
4056 4718 2.891580 AGTACTCTCTCGTTCTTTGGCA 59.108 45.455 0.00 0.00 0.00 4.92
4057 4719 2.910688 ACTCTCTCGTTCTTTGGCAA 57.089 45.000 0.00 0.00 0.00 4.52
4058 4720 3.194005 ACTCTCTCGTTCTTTGGCAAA 57.806 42.857 12.79 12.79 0.00 3.68
4059 4721 2.872858 ACTCTCTCGTTCTTTGGCAAAC 59.127 45.455 8.93 0.00 0.00 2.93
4060 4722 2.218603 TCTCTCGTTCTTTGGCAAACC 58.781 47.619 8.93 0.00 0.00 3.27
4061 4723 2.158813 TCTCTCGTTCTTTGGCAAACCT 60.159 45.455 8.93 0.00 36.63 3.50
4062 4724 3.070446 TCTCTCGTTCTTTGGCAAACCTA 59.930 43.478 8.93 0.00 36.63 3.08
4063 4725 3.399330 TCTCGTTCTTTGGCAAACCTAG 58.601 45.455 8.93 0.00 36.63 3.02
4064 4726 1.877443 TCGTTCTTTGGCAAACCTAGC 59.123 47.619 8.93 0.00 36.63 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.546778 TCAAAGATCGCATACCCGAAC 58.453 47.619 0.00 0.00 41.01 3.95
35 36 7.549842 GCCTCTATCGTAGATGACTTGTATAGA 59.450 40.741 0.00 0.00 45.12 1.98
52 53 2.860735 CACGGAGAAAAAGCCTCTATCG 59.139 50.000 0.00 0.00 0.00 2.92
62 63 1.611491 GACCAATGCCACGGAGAAAAA 59.389 47.619 0.00 0.00 0.00 1.94
83 84 1.078918 TCATGCGAAGGTCCAGCTG 60.079 57.895 6.78 6.78 0.00 4.24
95 96 0.093026 GGTTCGAAAGTCGTCATGCG 59.907 55.000 0.00 3.55 41.35 4.73
117 118 4.180057 GAGCCAGTCTGACACTAAATCAG 58.820 47.826 10.88 0.00 44.22 2.90
132 133 2.131405 CTCCATCATCGGAGCCAGT 58.869 57.895 0.00 0.00 45.95 4.00
165 166 3.947834 ACCAAACAAACTCAGTCTTCAGG 59.052 43.478 0.00 0.00 0.00 3.86
174 175 5.007034 TCTTCAGACAACCAAACAAACTCA 58.993 37.500 0.00 0.00 0.00 3.41
175 176 5.332707 GTCTTCAGACAACCAAACAAACTC 58.667 41.667 1.86 0.00 44.18 3.01
186 187 3.674997 TGCAATAGGGTCTTCAGACAAC 58.325 45.455 9.18 1.59 46.47 3.32
192 193 6.267471 ACAAAGAAATTGCAATAGGGTCTTCA 59.733 34.615 13.39 0.00 43.13 3.02
195 196 6.670695 AACAAAGAAATTGCAATAGGGTCT 57.329 33.333 13.39 10.24 43.13 3.85
203 204 7.763172 ACGATACAAAACAAAGAAATTGCAA 57.237 28.000 0.00 0.00 43.13 4.08
276 277 3.245586 ACCACACCATCTCTCTCTCTCTT 60.246 47.826 0.00 0.00 0.00 2.85
277 278 2.311542 ACCACACCATCTCTCTCTCTCT 59.688 50.000 0.00 0.00 0.00 3.10
278 279 2.733956 ACCACACCATCTCTCTCTCTC 58.266 52.381 0.00 0.00 0.00 3.20
279 280 2.917713 ACCACACCATCTCTCTCTCT 57.082 50.000 0.00 0.00 0.00 3.10
280 281 3.971245 AAACCACACCATCTCTCTCTC 57.029 47.619 0.00 0.00 0.00 3.20
281 282 3.648067 TGAAAACCACACCATCTCTCTCT 59.352 43.478 0.00 0.00 0.00 3.10
282 283 3.999663 CTGAAAACCACACCATCTCTCTC 59.000 47.826 0.00 0.00 0.00 3.20
283 284 3.244700 CCTGAAAACCACACCATCTCTCT 60.245 47.826 0.00 0.00 0.00 3.10
284 285 3.077359 CCTGAAAACCACACCATCTCTC 58.923 50.000 0.00 0.00 0.00 3.20
285 286 2.711009 TCCTGAAAACCACACCATCTCT 59.289 45.455 0.00 0.00 0.00 3.10
296 297 8.477256 TGATGGATTCAAAATATCCTGAAAACC 58.523 33.333 0.00 13.40 41.77 3.27
306 307 5.416952 GCTCCCGATGATGGATTCAAAATAT 59.583 40.000 0.00 0.00 38.03 1.28
307 308 4.761739 GCTCCCGATGATGGATTCAAAATA 59.238 41.667 0.00 0.00 38.03 1.40
319 320 4.202461 TGCTTTTATTAGGCTCCCGATGAT 60.202 41.667 0.00 0.00 0.00 2.45
327 328 2.561569 TCGGCTGCTTTTATTAGGCTC 58.438 47.619 0.00 0.00 35.12 4.70
340 341 0.383231 CAGAATGGGATTTCGGCTGC 59.617 55.000 0.00 0.00 0.00 5.25
426 427 3.677527 CCTTGTGAGGGCAGCAAG 58.322 61.111 0.00 0.00 39.55 4.01
435 436 0.604780 CTGGGTCTGCACCTTGTGAG 60.605 60.000 0.00 0.00 43.22 3.51
437 438 2.263741 GCTGGGTCTGCACCTTGTG 61.264 63.158 0.00 0.00 43.22 3.33
439 440 2.113774 TGCTGGGTCTGCACCTTG 59.886 61.111 0.00 0.00 43.22 3.61
480 486 2.202453 GCCGTCGTTCGTCCTCTC 60.202 66.667 0.00 0.00 37.94 3.20
500 506 1.673920 TGGTCGAAACTGGAAAGCAAC 59.326 47.619 0.00 0.00 0.00 4.17
534 540 2.892425 CCGCACCGCAGATTCTCC 60.892 66.667 0.00 0.00 0.00 3.71
589 599 2.505337 TTGCTGCGTACGTAGGCG 60.505 61.111 30.22 24.08 44.93 5.52
594 604 3.041940 GTGCCTTGCTGCGTACGT 61.042 61.111 17.90 0.00 0.00 3.57
606 621 3.463045 AAAAATCAGCAGGGTGCCT 57.537 47.368 0.00 0.00 46.52 4.75
664 680 1.597461 GGACGGAGGGAACAGAAGG 59.403 63.158 0.00 0.00 0.00 3.46
667 972 1.305046 GAGGGACGGAGGGAACAGA 60.305 63.158 0.00 0.00 0.00 3.41
679 984 0.547954 AGAAACCAGGGAGGAGGGAC 60.548 60.000 0.00 0.00 41.22 4.46
680 985 0.196118 AAGAAACCAGGGAGGAGGGA 59.804 55.000 0.00 0.00 41.22 4.20
683 988 3.797559 AGAAAAGAAACCAGGGAGGAG 57.202 47.619 0.00 0.00 41.22 3.69
684 989 3.436470 CCAAGAAAAGAAACCAGGGAGGA 60.436 47.826 0.00 0.00 41.22 3.71
685 990 2.893489 CCAAGAAAAGAAACCAGGGAGG 59.107 50.000 0.00 0.00 45.67 4.30
686 991 2.297315 GCCAAGAAAAGAAACCAGGGAG 59.703 50.000 0.00 0.00 0.00 4.30
687 992 2.316108 GCCAAGAAAAGAAACCAGGGA 58.684 47.619 0.00 0.00 0.00 4.20
688 993 1.344438 GGCCAAGAAAAGAAACCAGGG 59.656 52.381 0.00 0.00 0.00 4.45
689 994 2.038659 TGGCCAAGAAAAGAAACCAGG 58.961 47.619 0.61 0.00 0.00 4.45
690 995 3.384467 TCTTGGCCAAGAAAAGAAACCAG 59.616 43.478 39.82 15.28 43.79 4.00
691 996 3.370104 TCTTGGCCAAGAAAAGAAACCA 58.630 40.909 39.82 17.70 43.79 3.67
718 1023 3.941657 GAGGTGGCGTGCTGACCTC 62.942 68.421 20.33 20.33 46.82 3.85
720 1025 4.008933 AGAGGTGGCGTGCTGACC 62.009 66.667 5.71 5.71 0.00 4.02
722 1027 3.233980 ACAGAGGTGGCGTGCTGA 61.234 61.111 0.00 0.00 32.86 4.26
769 1074 2.044946 GAAAGCATGGGACGGGCT 60.045 61.111 0.00 0.00 41.99 5.19
800 1105 9.522804 CTGAGACGATAAGATTTACTAGCTTTT 57.477 33.333 0.00 0.00 0.00 2.27
802 1107 8.228035 ACTGAGACGATAAGATTTACTAGCTT 57.772 34.615 0.00 0.00 0.00 3.74
803 1108 7.811117 ACTGAGACGATAAGATTTACTAGCT 57.189 36.000 0.00 0.00 0.00 3.32
804 1109 9.947669 TTAACTGAGACGATAAGATTTACTAGC 57.052 33.333 0.00 0.00 0.00 3.42
815 1120 6.312487 CGTCAAGACTTAACTGAGACGATAA 58.688 40.000 14.84 0.00 44.26 1.75
836 1141 9.034544 ACGGTAAAACTACATATTTATTCCGTC 57.965 33.333 0.00 0.00 36.30 4.79
851 1156 7.534578 CACGCAATTATTTTCACGGTAAAACTA 59.465 33.333 0.01 0.00 31.50 2.24
853 1158 6.509908 CACGCAATTATTTTCACGGTAAAAC 58.490 36.000 0.01 0.00 31.50 2.43
860 1165 2.026742 GCTGCACGCAATTATTTTCACG 59.973 45.455 0.00 0.00 38.92 4.35
886 1191 3.241322 CAGTTGCGTTTTCTTCTTTGCAG 59.759 43.478 0.00 0.00 33.41 4.41
913 1218 7.541091 GCCTGTGTTTCGATTCGATTCTATATA 59.459 37.037 9.96 0.00 35.23 0.86
915 1220 5.690409 GCCTGTGTTTCGATTCGATTCTATA 59.310 40.000 9.96 0.00 35.23 1.31
916 1221 4.508124 GCCTGTGTTTCGATTCGATTCTAT 59.492 41.667 9.96 0.00 35.23 1.98
917 1222 3.863424 GCCTGTGTTTCGATTCGATTCTA 59.137 43.478 9.96 0.00 35.23 2.10
918 1223 2.673368 GCCTGTGTTTCGATTCGATTCT 59.327 45.455 9.96 0.00 35.23 2.40
919 1224 2.673368 AGCCTGTGTTTCGATTCGATTC 59.327 45.455 9.96 6.80 35.23 2.52
920 1225 2.673368 GAGCCTGTGTTTCGATTCGATT 59.327 45.455 9.96 0.00 35.23 3.34
921 1226 2.271800 GAGCCTGTGTTTCGATTCGAT 58.728 47.619 9.96 0.00 35.23 3.59
922 1227 1.710013 GAGCCTGTGTTTCGATTCGA 58.290 50.000 4.29 4.29 0.00 3.71
923 1228 0.366871 CGAGCCTGTGTTTCGATTCG 59.633 55.000 0.00 0.00 36.49 3.34
956 1262 2.246761 TTATAGGCGGTGGTGCGCTT 62.247 55.000 9.73 0.00 35.06 4.68
990 1297 3.580916 AGGACAGAGCGTCGTCTC 58.419 61.111 8.15 8.15 46.42 3.36
1042 1353 3.391665 GATGGGAGTGGAGCGTGGG 62.392 68.421 0.00 0.00 0.00 4.61
1043 1354 2.184020 TTGATGGGAGTGGAGCGTGG 62.184 60.000 0.00 0.00 0.00 4.94
1044 1355 0.107508 ATTGATGGGAGTGGAGCGTG 60.108 55.000 0.00 0.00 0.00 5.34
1045 1356 0.179000 GATTGATGGGAGTGGAGCGT 59.821 55.000 0.00 0.00 0.00 5.07
1046 1357 0.533755 GGATTGATGGGAGTGGAGCG 60.534 60.000 0.00 0.00 0.00 5.03
1047 1358 0.548031 TGGATTGATGGGAGTGGAGC 59.452 55.000 0.00 0.00 0.00 4.70
1048 1359 3.370840 TTTGGATTGATGGGAGTGGAG 57.629 47.619 0.00 0.00 0.00 3.86
1049 1360 3.373001 GGATTTGGATTGATGGGAGTGGA 60.373 47.826 0.00 0.00 0.00 4.02
1050 1361 2.961062 GGATTTGGATTGATGGGAGTGG 59.039 50.000 0.00 0.00 0.00 4.00
1051 1362 3.634504 TGGATTTGGATTGATGGGAGTG 58.365 45.455 0.00 0.00 0.00 3.51
1052 1363 4.335735 TTGGATTTGGATTGATGGGAGT 57.664 40.909 0.00 0.00 0.00 3.85
1053 1364 5.881923 ATTTGGATTTGGATTGATGGGAG 57.118 39.130 0.00 0.00 0.00 4.30
1106 1417 2.743928 GCAGGAACCAGTCGGCAG 60.744 66.667 0.00 0.00 34.57 4.85
1137 1448 2.202544 CGCTGAGTGTCGAGCCTC 60.203 66.667 4.65 4.65 30.98 4.70
1214 1537 4.882396 GCGGCGAAGGAGGAGAGC 62.882 72.222 12.98 0.00 0.00 4.09
1242 1565 2.040114 GGGGAAGGTACTCGGGGT 59.960 66.667 0.00 0.00 38.49 4.95
1286 1609 2.264794 CGTAGTGGACCTGGCACC 59.735 66.667 0.00 0.00 0.00 5.01
1288 1611 2.815684 ATCCCGTAGTGGACCTGGCA 62.816 60.000 0.00 0.00 42.00 4.92
1294 1617 0.745468 GACTGGATCCCGTAGTGGAC 59.255 60.000 9.02 0.00 42.00 4.02
1395 1718 2.903855 CATGCAGATCCGGGGCAC 60.904 66.667 12.03 0.00 40.83 5.01
1406 1729 2.502510 GCGCACGGAAACATGCAG 60.503 61.111 0.30 0.00 42.17 4.41
1407 1730 4.036804 GGCGCACGGAAACATGCA 62.037 61.111 10.83 0.00 42.17 3.96
1418 1748 3.579626 GAAGAGCAACACGGCGCAC 62.580 63.158 10.83 0.00 39.27 5.34
1436 1766 2.300152 TCAGTCTAACACCTCCAAGCAG 59.700 50.000 0.00 0.00 0.00 4.24
1470 1815 1.817099 GGGATTCCGCTGTCTGCAG 60.817 63.158 7.63 7.63 45.23 4.41
1474 1819 3.635510 GGAGGGATTCCGCTGTCT 58.364 61.111 0.00 0.00 35.91 3.41
1502 1850 1.506493 GTTGAGTCCTCTGTGCACAG 58.494 55.000 36.07 36.07 45.08 3.66
1504 1852 0.249489 ACGTTGAGTCCTCTGTGCAC 60.249 55.000 10.75 10.75 0.00 4.57
1506 1854 2.815722 GACGTTGAGTCCTCTGTGC 58.184 57.895 0.00 0.00 43.95 4.57
1518 1866 2.345641 AGCGAATCGATTGAAGACGTTG 59.654 45.455 16.96 0.00 0.00 4.10
1519 1867 2.599082 GAGCGAATCGATTGAAGACGTT 59.401 45.455 16.96 10.24 0.00 3.99
1520 1868 2.159366 AGAGCGAATCGATTGAAGACGT 60.159 45.455 16.96 3.55 0.00 4.34
1545 1893 3.067106 CAATAATTACCTCGCCATCGCT 58.933 45.455 0.00 0.00 35.26 4.93
1550 1898 3.496884 GCGAATCAATAATTACCTCGCCA 59.503 43.478 13.35 0.00 33.25 5.69
1551 1899 3.746492 AGCGAATCAATAATTACCTCGCC 59.254 43.478 17.62 7.04 37.50 5.54
1561 1909 4.507756 CCAACGATGAGAGCGAATCAATAA 59.492 41.667 0.00 0.00 0.00 1.40
1562 1910 4.051237 CCAACGATGAGAGCGAATCAATA 58.949 43.478 0.00 0.00 0.00 1.90
1564 1912 2.270923 CCAACGATGAGAGCGAATCAA 58.729 47.619 0.00 0.00 0.00 2.57
1565 1913 1.471501 CCCAACGATGAGAGCGAATCA 60.472 52.381 0.00 0.00 0.00 2.57
1566 1914 1.212616 CCCAACGATGAGAGCGAATC 58.787 55.000 0.00 0.00 0.00 2.52
1568 1916 0.320374 AACCCAACGATGAGAGCGAA 59.680 50.000 0.00 0.00 0.00 4.70
1570 1918 1.361668 CCAACCCAACGATGAGAGCG 61.362 60.000 0.00 0.00 0.00 5.03
1571 1919 0.321653 ACCAACCCAACGATGAGAGC 60.322 55.000 0.00 0.00 0.00 4.09
1578 1929 0.034337 GTAGCAGACCAACCCAACGA 59.966 55.000 0.00 0.00 0.00 3.85
1579 1930 0.034896 AGTAGCAGACCAACCCAACG 59.965 55.000 0.00 0.00 0.00 4.10
1594 1945 6.907212 CGGCAATAACAAATTAAGCAGAGTAG 59.093 38.462 0.00 0.00 30.80 2.57
1595 1946 6.676943 GCGGCAATAACAAATTAAGCAGAGTA 60.677 38.462 0.00 0.00 30.80 2.59
1596 1947 5.640732 CGGCAATAACAAATTAAGCAGAGT 58.359 37.500 0.00 0.00 30.80 3.24
1597 1948 4.500477 GCGGCAATAACAAATTAAGCAGAG 59.500 41.667 0.00 0.00 30.80 3.35
1598 1949 4.157656 AGCGGCAATAACAAATTAAGCAGA 59.842 37.500 1.45 0.00 30.80 4.26
1599 1950 4.266029 CAGCGGCAATAACAAATTAAGCAG 59.734 41.667 1.45 0.00 30.80 4.24
1600 1951 4.082517 TCAGCGGCAATAACAAATTAAGCA 60.083 37.500 1.45 0.00 30.80 3.91
1601 1952 4.420168 TCAGCGGCAATAACAAATTAAGC 58.580 39.130 1.45 0.00 0.00 3.09
1602 1953 5.861251 TGTTCAGCGGCAATAACAAATTAAG 59.139 36.000 1.45 0.00 0.00 1.85
1603 1954 5.773575 TGTTCAGCGGCAATAACAAATTAA 58.226 33.333 1.45 0.00 0.00 1.40
1604 1955 5.378292 TGTTCAGCGGCAATAACAAATTA 57.622 34.783 1.45 0.00 0.00 1.40
1605 1956 4.250116 TGTTCAGCGGCAATAACAAATT 57.750 36.364 1.45 0.00 0.00 1.82
1606 1957 3.932545 TGTTCAGCGGCAATAACAAAT 57.067 38.095 1.45 0.00 0.00 2.32
1614 1965 0.882484 TCGTTCATGTTCAGCGGCAA 60.882 50.000 1.45 0.00 0.00 4.52
1618 1969 0.439985 CACCTCGTTCATGTTCAGCG 59.560 55.000 0.00 0.00 0.00 5.18
1625 1976 3.837213 AATCAAAGCACCTCGTTCATG 57.163 42.857 0.00 0.00 0.00 3.07
1648 1999 1.350019 TCCCTCTCGTAGTCACTGTGA 59.650 52.381 6.36 6.36 0.00 3.58
1654 2006 2.444421 GGAAACTCCCTCTCGTAGTCA 58.556 52.381 0.00 0.00 0.00 3.41
1660 2012 1.215647 CACCGGAAACTCCCTCTCG 59.784 63.158 9.46 0.00 31.13 4.04
1666 2018 1.228154 AGGCAACACCGGAAACTCC 60.228 57.895 9.46 3.28 46.52 3.85
1682 2034 3.741476 GCTTCCGGTTGCAGCAGG 61.741 66.667 13.48 13.48 33.45 4.85
1693 2045 3.374058 ACGAATTTCCTTACATGCTTCCG 59.626 43.478 0.00 0.00 0.00 4.30
1695 2047 5.545658 TCACGAATTTCCTTACATGCTTC 57.454 39.130 0.00 0.00 0.00 3.86
1734 2086 4.202070 ACACCCAAACGAATCGAAATTGTT 60.202 37.500 10.55 0.00 0.00 2.83
1735 2087 3.316868 ACACCCAAACGAATCGAAATTGT 59.683 39.130 10.55 1.76 0.00 2.71
1744 2096 4.340950 ACTGAAATGAACACCCAAACGAAT 59.659 37.500 0.00 0.00 0.00 3.34
1745 2097 3.697045 ACTGAAATGAACACCCAAACGAA 59.303 39.130 0.00 0.00 0.00 3.85
1754 2106 4.496895 GCATCGCATTACTGAAATGAACAC 59.503 41.667 2.01 0.00 46.81 3.32
1765 2117 1.233019 GGCATCAGCATCGCATTACT 58.767 50.000 0.00 0.00 44.61 2.24
1766 2118 0.946528 TGGCATCAGCATCGCATTAC 59.053 50.000 0.00 0.00 44.61 1.89
1824 2176 5.755375 TGTTCGAATGCTTGATAGGAGATTC 59.245 40.000 0.00 0.00 0.00 2.52
1842 2200 1.301401 CCCGGAGCTTGTTGTTCGA 60.301 57.895 0.73 0.00 0.00 3.71
1848 2206 4.035102 GCCTCCCCGGAGCTTGTT 62.035 66.667 0.73 0.00 40.69 2.83
1927 2288 2.125350 GCTCAGCGTCTCCCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
1928 2289 1.447489 CAGCTCAGCGTCTCCCTTG 60.447 63.158 0.00 0.00 0.00 3.61
1929 2290 1.607756 TCAGCTCAGCGTCTCCCTT 60.608 57.895 0.00 0.00 0.00 3.95
1931 2292 2.183046 GTCAGCTCAGCGTCTCCC 59.817 66.667 0.00 0.00 0.00 4.30
1933 2294 0.796491 CTTCGTCAGCTCAGCGTCTC 60.796 60.000 0.00 0.00 0.00 3.36
1934 2295 1.211449 CTTCGTCAGCTCAGCGTCT 59.789 57.895 0.00 0.00 0.00 4.18
1935 2296 1.803519 CCTTCGTCAGCTCAGCGTC 60.804 63.158 0.00 0.00 0.00 5.19
1937 2298 2.507992 CCCTTCGTCAGCTCAGCG 60.508 66.667 0.00 0.00 0.00 5.18
1938 2299 2.817396 GCCCTTCGTCAGCTCAGC 60.817 66.667 0.00 0.00 0.00 4.26
1939 2300 2.507992 CGCCCTTCGTCAGCTCAG 60.508 66.667 0.00 0.00 0.00 3.35
1940 2301 2.989253 TCGCCCTTCGTCAGCTCA 60.989 61.111 0.00 0.00 39.67 4.26
1942 2303 2.676822 TCTCGCCCTTCGTCAGCT 60.677 61.111 0.00 0.00 39.67 4.24
1944 2305 2.202676 GCTCTCGCCCTTCGTCAG 60.203 66.667 0.00 0.00 39.67 3.51
1981 2342 2.367202 TGGCCCTCGACCTTGATCC 61.367 63.158 0.00 0.00 0.00 3.36
2043 2404 2.830370 GCCCTTGGCCTTGATCGG 60.830 66.667 3.32 0.00 44.06 4.18
2066 2427 4.735132 TCGCCCTTCGCCAGTTCG 62.735 66.667 0.00 0.00 38.27 3.95
2067 2428 2.815647 CTCGCCCTTCGCCAGTTC 60.816 66.667 0.00 0.00 38.27 3.01
2068 2429 3.302347 CTCTCGCCCTTCGCCAGTT 62.302 63.158 0.00 0.00 38.27 3.16
2069 2430 3.764466 CTCTCGCCCTTCGCCAGT 61.764 66.667 0.00 0.00 38.27 4.00
2074 2435 4.560856 CCTCGCTCTCGCCCTTCG 62.561 72.222 0.00 0.00 40.15 3.79
2075 2436 4.214327 CCCTCGCTCTCGCCCTTC 62.214 72.222 0.00 0.00 35.26 3.46
2082 2443 4.847444 GGCTTGGCCCTCGCTCTC 62.847 72.222 0.00 0.00 44.06 3.20
2093 2454 4.514577 ATCGACGCCTCGGCTTGG 62.515 66.667 6.35 0.00 40.58 3.61
2094 2455 2.956964 GATCGACGCCTCGGCTTG 60.957 66.667 6.35 0.00 40.58 4.01
2095 2456 2.890847 CTTGATCGACGCCTCGGCTT 62.891 60.000 6.35 0.00 40.58 4.35
2096 2457 3.417275 CTTGATCGACGCCTCGGCT 62.417 63.158 6.35 0.00 40.58 5.52
2097 2458 2.956964 CTTGATCGACGCCTCGGC 60.957 66.667 5.27 0.00 40.58 5.54
2098 2459 2.278857 CCTTGATCGACGCCTCGG 60.279 66.667 5.27 0.00 40.58 4.63
2099 2460 1.586564 GACCTTGATCGACGCCTCG 60.587 63.158 0.00 0.00 41.65 4.63
2100 2461 1.586564 CGACCTTGATCGACGCCTC 60.587 63.158 0.00 0.00 45.13 4.70
2101 2462 1.994507 CTCGACCTTGATCGACGCCT 61.995 60.000 0.00 0.00 45.84 5.52
2102 2463 1.586564 CTCGACCTTGATCGACGCC 60.587 63.158 0.00 0.00 45.84 5.68
2103 2464 1.586564 CCTCGACCTTGATCGACGC 60.587 63.158 0.00 0.00 45.84 5.19
2104 2465 1.064296 CCCTCGACCTTGATCGACG 59.936 63.158 0.00 0.00 45.84 5.12
2105 2466 1.227002 GCCCTCGACCTTGATCGAC 60.227 63.158 0.00 0.00 45.84 4.20
2107 2468 2.107141 GGCCCTCGACCTTGATCG 59.893 66.667 0.00 0.00 43.63 3.69
2108 2469 1.144936 CTGGCCCTCGACCTTGATC 59.855 63.158 0.00 0.00 0.00 2.92
2109 2470 2.370445 CCTGGCCCTCGACCTTGAT 61.370 63.158 0.00 0.00 0.00 2.57
2110 2471 3.003173 CCTGGCCCTCGACCTTGA 61.003 66.667 0.00 0.00 0.00 3.02
2111 2472 4.785453 GCCTGGCCCTCGACCTTG 62.785 72.222 7.66 0.00 0.00 3.61
2123 2484 3.997064 CTTCGTCAGCTCGGCCTGG 62.997 68.421 0.00 0.00 33.64 4.45
2124 2485 2.507992 CTTCGTCAGCTCGGCCTG 60.508 66.667 0.00 0.00 0.00 4.85
2125 2486 3.764466 CCTTCGTCAGCTCGGCCT 61.764 66.667 0.00 0.00 0.00 5.19
2126 2487 4.821589 CCCTTCGTCAGCTCGGCC 62.822 72.222 0.00 0.00 0.00 6.13
2129 2490 4.116328 TCGCCCTTCGTCAGCTCG 62.116 66.667 0.00 0.00 39.67 5.03
2130 2491 2.202676 CTCGCCCTTCGTCAGCTC 60.203 66.667 0.00 0.00 39.67 4.09
2131 2492 2.676822 TCTCGCCCTTCGTCAGCT 60.677 61.111 0.00 0.00 39.67 4.24
2132 2493 2.202676 CTCTCGCCCTTCGTCAGC 60.203 66.667 0.00 0.00 39.67 4.26
2133 2494 2.202676 GCTCTCGCCCTTCGTCAG 60.203 66.667 0.00 0.00 39.67 3.51
2134 2495 4.116328 CGCTCTCGCCCTTCGTCA 62.116 66.667 0.00 0.00 39.67 4.35
2135 2496 3.743091 CTCGCTCTCGCCCTTCGTC 62.743 68.421 0.00 0.00 39.67 4.20
2136 2497 3.816524 CTCGCTCTCGCCCTTCGT 61.817 66.667 0.00 0.00 39.67 3.85
2137 2498 4.560856 CCTCGCTCTCGCCCTTCG 62.561 72.222 0.00 0.00 40.15 3.79
2138 2499 3.141488 TCCTCGCTCTCGCCCTTC 61.141 66.667 0.00 0.00 35.26 3.46
2139 2500 3.453679 GTCCTCGCTCTCGCCCTT 61.454 66.667 0.00 0.00 35.26 3.95
2142 2503 4.500116 GTGGTCCTCGCTCTCGCC 62.500 72.222 0.00 0.00 35.26 5.54
2143 2504 4.838486 CGTGGTCCTCGCTCTCGC 62.838 72.222 0.00 0.00 35.26 5.03
2193 2554 1.006102 CGCTCTTGACCGACACCTT 60.006 57.895 0.00 0.00 0.00 3.50
2199 2560 1.289066 CCTTGTCGCTCTTGACCGA 59.711 57.895 0.00 0.00 38.11 4.69
2244 2605 3.207669 CTGGCCATTGAGCTCGCC 61.208 66.667 19.97 19.97 41.99 5.54
2276 2637 3.552273 GGCCGCATCTTACTAGAATCGAA 60.552 47.826 0.00 0.00 33.67 3.71
2298 2659 2.983592 GACAACGGCAACTGGGGG 60.984 66.667 0.00 0.00 0.00 5.40
2318 2679 2.352805 CAGCCCTCAACACCTCCC 59.647 66.667 0.00 0.00 0.00 4.30
2366 2727 0.179000 CACCTCCAGCATGTACTCCC 59.821 60.000 0.00 0.00 0.00 4.30
2371 2732 1.210234 CATCACCACCTCCAGCATGTA 59.790 52.381 0.00 0.00 0.00 2.29
2374 2735 0.915872 TCCATCACCACCTCCAGCAT 60.916 55.000 0.00 0.00 0.00 3.79
2546 2914 3.958147 CTGGCATCTGGCGAACGGT 62.958 63.158 0.00 0.00 46.16 4.83
2604 2972 4.347453 GCAAACCAGCCCGCACTG 62.347 66.667 0.00 0.00 37.42 3.66
2609 2977 3.365265 GGACAGCAAACCAGCCCG 61.365 66.667 0.00 0.00 34.23 6.13
2705 3073 1.631898 GGGTACTGAAAGGGCTGGTAA 59.368 52.381 0.00 0.00 39.30 2.85
2729 3097 1.405821 CCGACGAATAGCTGGAGAGTT 59.594 52.381 0.00 0.00 0.00 3.01
2735 3103 2.230940 CGCACCGACGAATAGCTGG 61.231 63.158 0.00 0.00 34.06 4.85
2741 3109 1.662446 ACGAAACGCACCGACGAAT 60.662 52.632 0.00 0.00 36.70 3.34
2750 3118 0.589223 GATTTCCCACACGAAACGCA 59.411 50.000 0.00 0.00 34.68 5.24
2755 3123 1.956297 AACACGATTTCCCACACGAA 58.044 45.000 0.00 0.00 0.00 3.85
2756 3124 2.036217 ACTAACACGATTTCCCACACGA 59.964 45.455 0.00 0.00 0.00 4.35
2771 3139 5.472137 GGGTCTTGCAAAGTAATGACTAACA 59.528 40.000 12.34 0.00 46.34 2.41
2780 3148 3.586470 TCTTGGGGTCTTGCAAAGTAA 57.414 42.857 0.00 0.00 46.34 2.24
2798 3166 1.203038 TCACCATGCCCAAACACATCT 60.203 47.619 0.00 0.00 0.00 2.90
2813 3181 1.629861 TCTCCAGCAATGACATCACCA 59.370 47.619 0.00 0.00 0.00 4.17
2840 3208 2.071778 AACCCTGCATGTCAAAGTGT 57.928 45.000 0.00 0.00 0.00 3.55
2859 3227 4.513442 CGGACAGATCTAACCATCCAAAA 58.487 43.478 14.85 0.00 0.00 2.44
2903 3271 2.816087 CTCAGGAAACATGTTGACCCTG 59.184 50.000 30.08 30.08 0.00 4.45
2909 3277 0.890683 GGGGCTCAGGAAACATGTTG 59.109 55.000 12.82 0.00 0.00 3.33
2910 3278 0.482446 TGGGGCTCAGGAAACATGTT 59.518 50.000 4.92 4.92 0.00 2.71
2921 3289 3.245586 ACCATGAATAAAACTGGGGCTCA 60.246 43.478 0.00 0.00 32.89 4.26
2936 3304 7.093509 TGCTTACAAGACAGTATCTACCATGAA 60.094 37.037 0.00 0.00 36.27 2.57
2974 3342 3.704800 AAAGCCCAGTTTCTAGAGGTC 57.295 47.619 0.00 0.00 0.00 3.85
2977 3345 3.149196 TGCAAAAGCCCAGTTTCTAGAG 58.851 45.455 0.00 0.00 0.00 2.43
2991 3359 7.827819 AATCATTGATCACTGAATGCAAAAG 57.172 32.000 18.41 0.00 30.89 2.27
2998 3366 7.698506 AGTGACAAATCATTGATCACTGAAT 57.301 32.000 18.41 8.67 45.49 2.57
3000 3368 8.620116 TTTAGTGACAAATCATTGATCACTGA 57.380 30.769 22.26 17.04 46.01 3.41
3096 3478 0.951558 ACACAACATTCGGTTCAGCC 59.048 50.000 0.00 0.00 37.72 4.85
3120 3504 1.514014 GCCGCCGTGCACAAATAAG 60.514 57.895 18.64 0.00 0.00 1.73
3147 3531 1.304713 CAGCATTTGGACAGGCCCT 60.305 57.895 0.00 0.00 34.97 5.19
3154 3538 9.674824 CAAATAGATTTATCTCAGCATTTGGAC 57.325 33.333 13.21 0.00 36.47 4.02
3179 3563 2.491693 GGACTTTGATTCCGGATTTGCA 59.508 45.455 4.15 0.00 0.00 4.08
3196 3580 2.598565 TCTGACAGCTACAACAGGACT 58.401 47.619 0.00 0.00 0.00 3.85
3197 3581 3.601443 ATCTGACAGCTACAACAGGAC 57.399 47.619 0.00 0.00 0.00 3.85
3198 3582 6.129874 ACTATATCTGACAGCTACAACAGGA 58.870 40.000 0.00 0.00 0.00 3.86
3199 3583 6.398234 ACTATATCTGACAGCTACAACAGG 57.602 41.667 0.00 0.00 0.00 4.00
3200 3584 8.625651 AGTTACTATATCTGACAGCTACAACAG 58.374 37.037 0.00 0.00 0.00 3.16
3201 3585 8.521170 AGTTACTATATCTGACAGCTACAACA 57.479 34.615 0.00 0.00 0.00 3.33
3203 3587 9.286170 CCTAGTTACTATATCTGACAGCTACAA 57.714 37.037 0.00 0.00 0.00 2.41
3204 3588 8.657712 TCCTAGTTACTATATCTGACAGCTACA 58.342 37.037 0.00 0.00 0.00 2.74
3205 3589 8.938906 GTCCTAGTTACTATATCTGACAGCTAC 58.061 40.741 0.00 0.00 0.00 3.58
3206 3590 8.657712 TGTCCTAGTTACTATATCTGACAGCTA 58.342 37.037 0.00 0.00 0.00 3.32
3297 3956 6.889301 TTCGTCCCATCTCGTTTATATACT 57.111 37.500 0.00 0.00 0.00 2.12
3317 3976 4.467198 ACTTGGGGTTACTGTAGATTCG 57.533 45.455 0.00 0.00 0.00 3.34
3325 3984 4.714632 TCTTTCTGAACTTGGGGTTACTG 58.285 43.478 0.00 0.00 38.41 2.74
3375 4034 0.033208 TGGATTGCCCTTAAGCCTGG 60.033 55.000 0.00 0.00 37.04 4.45
3398 4057 0.107557 AAACGTGTTTGGGTCGACCT 60.108 50.000 32.52 8.80 41.11 3.85
3487 4148 2.034066 CAGTTGGGCGTCATGGGT 59.966 61.111 0.00 0.00 0.00 4.51
3490 4151 1.131126 GTCATTCAGTTGGGCGTCATG 59.869 52.381 0.00 0.00 0.00 3.07
3505 4166 7.722949 AAGTATGACAAATCAATGGGTCATT 57.277 32.000 10.88 0.00 45.85 2.57
3510 4171 9.492973 AAAGAAAAAGTATGACAAATCAATGGG 57.507 29.630 0.00 0.00 38.69 4.00
3581 4242 2.382882 TGTGCAATGTTTTGTCCCTCA 58.617 42.857 0.00 0.00 35.17 3.86
3638 4299 9.217278 TGGTTGTTACTATGCGTTCTTTATTTA 57.783 29.630 0.00 0.00 0.00 1.40
3709 4370 7.833285 AGGAAACCAATAGTTGTATGTGTTT 57.167 32.000 0.00 0.00 39.19 2.83
3740 4401 1.803334 TGGTTGAGCATACGTGAACC 58.197 50.000 0.00 0.00 37.23 3.62
3747 4408 8.515414 ACTTTAAGAAGATTTGGTTGAGCATAC 58.485 33.333 0.00 0.00 36.69 2.39
3769 4430 5.811399 TCGAACAACTCACATTCAACTTT 57.189 34.783 0.00 0.00 0.00 2.66
3802 4463 9.708092 TTTGCACAATTCATTCATTTTCTCATA 57.292 25.926 0.00 0.00 0.00 2.15
3807 4468 8.949953 CAAAGTTTGCACAATTCATTCATTTTC 58.050 29.630 1.96 0.00 0.00 2.29
3843 4505 1.661112 GTGTAAATGCTGAGGTCGAGC 59.339 52.381 6.48 6.48 36.95 5.03
3847 4509 2.749621 CAAGGGTGTAAATGCTGAGGTC 59.250 50.000 0.00 0.00 0.00 3.85
3848 4510 2.555227 CCAAGGGTGTAAATGCTGAGGT 60.555 50.000 0.00 0.00 0.00 3.85
3856 4518 9.354673 CATCATCTATTAACCAAGGGTGTAAAT 57.645 33.333 0.00 0.00 35.34 1.40
3880 4542 4.402474 TGTAGAGGATGAACGTGATGACAT 59.598 41.667 0.00 0.00 0.00 3.06
3891 4553 5.355071 GCACAACATGATTGTAGAGGATGAA 59.645 40.000 0.00 0.00 34.06 2.57
3925 4587 2.289257 TGTGAGAGGTGATGTCTGCTTG 60.289 50.000 0.00 0.00 0.00 4.01
3955 4617 0.099436 CCTGCTAAATGTTGGAGCGC 59.901 55.000 0.00 0.00 39.14 5.92
3978 4640 2.917933 TCTCAATGGGCTATTGTTCGG 58.082 47.619 20.95 11.22 45.17 4.30
3994 4656 2.655090 TTTGGTGTGCTCCAATCTCA 57.345 45.000 6.56 0.00 45.30 3.27
4002 4664 2.514205 AGCATGTTTTTGGTGTGCTC 57.486 45.000 0.00 0.00 41.97 4.26
4017 4679 2.769209 ACTAGGAAGGATGTGGAGCAT 58.231 47.619 0.00 0.00 41.24 3.79
4018 4680 2.254152 ACTAGGAAGGATGTGGAGCA 57.746 50.000 0.00 0.00 0.00 4.26
4041 4703 2.222027 AGGTTTGCCAAAGAACGAGAG 58.778 47.619 0.00 0.00 37.19 3.20
4042 4704 2.341846 AGGTTTGCCAAAGAACGAGA 57.658 45.000 0.00 0.00 37.19 4.04
4043 4705 2.095718 GCTAGGTTTGCCAAAGAACGAG 60.096 50.000 0.00 0.00 37.19 4.18
4044 4706 1.877443 GCTAGGTTTGCCAAAGAACGA 59.123 47.619 0.00 0.00 37.19 3.85
4045 4707 2.331809 GCTAGGTTTGCCAAAGAACG 57.668 50.000 0.00 0.00 37.19 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.