Multiple sequence alignment - TraesCS1B01G411400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G411400 chr1B 100.000 3395 0 0 1 3395 637620775 637624169 0.000000e+00 6270.0
1 TraesCS1B01G411400 chr1B 84.947 1601 214 16 816 2396 637525347 637523754 0.000000e+00 1596.0
2 TraesCS1B01G411400 chr1B 84.727 1591 224 15 816 2395 663611626 663610044 0.000000e+00 1574.0
3 TraesCS1B01G411400 chr1B 80.103 1362 246 15 1077 2431 637825370 637824027 0.000000e+00 990.0
4 TraesCS1B01G411400 chr1B 82.906 1053 167 9 1283 2327 637820326 637819279 0.000000e+00 935.0
5 TraesCS1B01G411400 chr1B 77.575 1534 279 46 872 2374 637815812 637817311 0.000000e+00 867.0
6 TraesCS1B01G411400 chr1B 85.070 355 31 13 303 647 637526014 637525672 3.240000e-90 342.0
7 TraesCS1B01G411400 chr1D 94.100 3068 103 35 91 3109 462486839 462489877 0.000000e+00 4591.0
8 TraesCS1B01G411400 chr1D 81.227 1353 223 21 990 2327 462719054 462717718 0.000000e+00 1062.0
9 TraesCS1B01G411400 chr1D 85.387 698 100 2 1620 2316 462396215 462396911 0.000000e+00 723.0
10 TraesCS1B01G411400 chr1D 76.138 1362 266 41 990 2325 462714355 462715683 0.000000e+00 660.0
11 TraesCS1B01G411400 chr1D 87.815 238 11 7 277 504 462395366 462395595 2.600000e-66 263.0
12 TraesCS1B01G411400 chr1D 79.337 392 51 18 678 1064 462395825 462396191 7.270000e-62 248.0
13 TraesCS1B01G411400 chr1D 77.692 260 46 10 1001 1251 462736698 462736442 7.590000e-32 148.0
14 TraesCS1B01G411400 chr1D 96.825 63 1 1 3333 3395 462490014 462490075 1.670000e-18 104.0
15 TraesCS1B01G411400 chr1D 97.778 45 1 0 3107 3151 462489972 462490016 1.010000e-10 78.7
16 TraesCS1B01G411400 chr1A 84.117 1574 217 17 813 2364 554221562 554223124 0.000000e+00 1491.0
17 TraesCS1B01G411400 chr1A 81.380 1203 212 10 1132 2327 554526203 554525006 0.000000e+00 970.0
18 TraesCS1B01G411400 chr1A 91.005 189 12 3 303 487 554214838 554215025 2.020000e-62 250.0
19 TraesCS1B01G411400 chr1A 97.778 90 2 0 1 90 574387745 574387656 4.540000e-34 156.0
20 TraesCS1B01G411400 chr7B 95.050 101 5 0 1 101 512689998 512689898 3.510000e-35 159.0
21 TraesCS1B01G411400 chr7A 97.778 90 2 0 1 90 624752755 624752666 4.540000e-34 156.0
22 TraesCS1B01G411400 chr7A 96.703 91 3 0 1 91 634136756 634136846 5.870000e-33 152.0
23 TraesCS1B01G411400 chr6A 96.774 93 3 0 1 93 12687043 12686951 4.540000e-34 156.0
24 TraesCS1B01G411400 chr6A 96.774 93 3 0 1 93 86408463 86408371 4.540000e-34 156.0
25 TraesCS1B01G411400 chr6A 97.778 90 2 0 1 90 570896788 570896877 4.540000e-34 156.0
26 TraesCS1B01G411400 chr2A 97.778 90 2 0 1 90 762955514 762955603 4.540000e-34 156.0
27 TraesCS1B01G411400 chr4B 94.059 101 4 1 1 101 14705385 14705287 5.870000e-33 152.0
28 TraesCS1B01G411400 chr4B 77.593 241 51 2 2086 2323 608827092 608827332 3.530000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G411400 chr1B 637620775 637624169 3394 False 6270.000000 6270 100.000000 1 3395 1 chr1B.!!$F1 3394
1 TraesCS1B01G411400 chr1B 663610044 663611626 1582 True 1574.000000 1574 84.727000 816 2395 1 chr1B.!!$R1 1579
2 TraesCS1B01G411400 chr1B 637523754 637526014 2260 True 969.000000 1596 85.008500 303 2396 2 chr1B.!!$R2 2093
3 TraesCS1B01G411400 chr1B 637819279 637825370 6091 True 962.500000 990 81.504500 1077 2431 2 chr1B.!!$R3 1354
4 TraesCS1B01G411400 chr1B 637815812 637817311 1499 False 867.000000 867 77.575000 872 2374 1 chr1B.!!$F2 1502
5 TraesCS1B01G411400 chr1D 462486839 462490075 3236 False 1591.233333 4591 96.234333 91 3395 3 chr1D.!!$F3 3304
6 TraesCS1B01G411400 chr1D 462717718 462719054 1336 True 1062.000000 1062 81.227000 990 2327 1 chr1D.!!$R1 1337
7 TraesCS1B01G411400 chr1D 462714355 462715683 1328 False 660.000000 660 76.138000 990 2325 1 chr1D.!!$F1 1335
8 TraesCS1B01G411400 chr1D 462395366 462396911 1545 False 411.333333 723 84.179667 277 2316 3 chr1D.!!$F2 2039
9 TraesCS1B01G411400 chr1A 554221562 554223124 1562 False 1491.000000 1491 84.117000 813 2364 1 chr1A.!!$F2 1551
10 TraesCS1B01G411400 chr1A 554525006 554526203 1197 True 970.000000 970 81.380000 1132 2327 1 chr1A.!!$R1 1195

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.036858 TGATGTCAAATCGGACGCCA 60.037 50.0 0.0 0.0 40.72 5.69 F
767 915 0.179048 TATGTCCAAGATGCAGGCGG 60.179 55.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1211 1632 1.20233 CTTGGAGGAGAGGAGTGCAT 58.798 55.0 0.0 0.0 0.0 3.96 R
2620 7938 0.10412 GCCAAACTGAACCACCCAAC 59.896 55.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.958822 CCAGGTGGTTTCCTTTTCCG 59.041 55.000 0.00 0.00 35.37 4.30
37 38 0.958822 CAGGTGGTTTCCTTTTCCGG 59.041 55.000 0.00 0.00 35.37 5.14
38 39 0.178973 AGGTGGTTTCCTTTTCCGGG 60.179 55.000 0.00 0.00 33.52 5.73
39 40 0.468585 GGTGGTTTCCTTTTCCGGGT 60.469 55.000 0.00 0.00 0.00 5.28
40 41 0.671796 GTGGTTTCCTTTTCCGGGTG 59.328 55.000 0.00 0.00 0.00 4.61
41 42 0.468400 TGGTTTCCTTTTCCGGGTGG 60.468 55.000 0.00 0.00 0.00 4.61
42 43 1.663739 GTTTCCTTTTCCGGGTGGC 59.336 57.895 0.00 0.00 34.14 5.01
43 44 1.532078 TTTCCTTTTCCGGGTGGCC 60.532 57.895 0.00 0.00 34.14 5.36
44 45 3.853698 TTCCTTTTCCGGGTGGCCG 62.854 63.158 0.00 0.00 34.14 6.13
58 59 2.280457 GCCGCTGGCTAGTGATCC 60.280 66.667 12.80 0.00 46.69 3.36
59 60 2.423446 CCGCTGGCTAGTGATCCC 59.577 66.667 12.80 0.00 36.52 3.85
60 61 2.434843 CCGCTGGCTAGTGATCCCA 61.435 63.158 12.80 0.00 36.52 4.37
61 62 1.068753 CGCTGGCTAGTGATCCCAG 59.931 63.158 4.33 9.85 46.95 4.45
62 63 1.449353 GCTGGCTAGTGATCCCAGG 59.551 63.158 14.51 0.57 44.91 4.45
63 64 2.049627 GCTGGCTAGTGATCCCAGGG 62.050 65.000 14.51 0.00 44.91 4.45
64 65 2.049627 CTGGCTAGTGATCCCAGGGC 62.050 65.000 0.00 0.00 41.87 5.19
65 66 2.423446 GCTAGTGATCCCAGGGCG 59.577 66.667 0.00 0.00 0.00 6.13
66 67 3.142393 CTAGTGATCCCAGGGCGG 58.858 66.667 0.00 0.00 0.00 6.13
67 68 3.161450 TAGTGATCCCAGGGCGGC 61.161 66.667 0.00 0.00 0.00 6.53
88 89 4.849329 CCGCCCACTAGACGCGTC 62.849 72.222 31.30 31.30 44.29 5.19
89 90 4.849329 CGCCCACTAGACGCGTCC 62.849 72.222 34.08 16.62 40.99 4.79
110 111 4.970640 TCCGTAACTAATTACCCCAATCCT 59.029 41.667 0.00 0.00 37.94 3.24
111 112 5.070847 TCCGTAACTAATTACCCCAATCCTC 59.929 44.000 0.00 0.00 37.94 3.71
139 140 7.614124 AATAATGTAATTAACGACAACGGGT 57.386 32.000 0.00 0.00 42.96 5.28
146 147 1.560505 AACGACAACGGGTAGGGTAT 58.439 50.000 0.00 0.00 44.46 2.73
147 148 2.435372 ACGACAACGGGTAGGGTATA 57.565 50.000 0.00 0.00 44.46 1.47
148 149 2.949447 ACGACAACGGGTAGGGTATAT 58.051 47.619 0.00 0.00 44.46 0.86
149 150 4.098914 ACGACAACGGGTAGGGTATATA 57.901 45.455 0.00 0.00 44.46 0.86
150 151 3.821033 ACGACAACGGGTAGGGTATATAC 59.179 47.826 4.14 4.14 44.46 1.47
151 152 3.120199 CGACAACGGGTAGGGTATATACG 60.120 52.174 6.79 0.00 35.72 3.06
190 191 0.036858 TGATGTCAAATCGGACGCCA 60.037 50.000 0.00 0.00 40.72 5.69
191 192 1.299541 GATGTCAAATCGGACGCCAT 58.700 50.000 0.00 0.00 40.72 4.40
192 193 1.261619 GATGTCAAATCGGACGCCATC 59.738 52.381 0.00 0.00 40.72 3.51
193 194 0.249120 TGTCAAATCGGACGCCATCT 59.751 50.000 0.00 0.00 40.72 2.90
194 195 1.338674 TGTCAAATCGGACGCCATCTT 60.339 47.619 0.00 0.00 40.72 2.40
195 196 2.093921 TGTCAAATCGGACGCCATCTTA 60.094 45.455 0.00 0.00 40.72 2.10
196 197 3.131396 GTCAAATCGGACGCCATCTTAT 58.869 45.455 0.00 0.00 0.00 1.73
197 198 4.202172 TGTCAAATCGGACGCCATCTTATA 60.202 41.667 0.00 0.00 40.72 0.98
199 200 2.631418 ATCGGACGCCATCTTATACG 57.369 50.000 0.00 0.00 0.00 3.06
201 202 2.493035 TCGGACGCCATCTTATACGTA 58.507 47.619 0.00 0.00 39.16 3.57
202 203 3.076621 TCGGACGCCATCTTATACGTAT 58.923 45.455 13.54 13.54 39.16 3.06
203 204 4.252878 TCGGACGCCATCTTATACGTATA 58.747 43.478 11.27 11.27 39.16 1.47
204 205 4.877823 TCGGACGCCATCTTATACGTATAT 59.122 41.667 15.77 0.00 39.16 0.86
223 244 4.452733 CGCCCCTTCCGACAGACC 62.453 72.222 0.00 0.00 0.00 3.85
224 245 3.003763 GCCCCTTCCGACAGACCT 61.004 66.667 0.00 0.00 0.00 3.85
225 246 2.593956 GCCCCTTCCGACAGACCTT 61.594 63.158 0.00 0.00 0.00 3.50
266 287 0.248377 GTCTCACCGGTTCGTATCCG 60.248 60.000 2.97 8.23 46.49 4.18
296 317 3.333980 CCTAAATAATCCCCTTCCCCTCC 59.666 52.174 0.00 0.00 0.00 4.30
321 342 3.997400 CTCCGTCTCTCCCGGCAGA 62.997 68.421 0.00 0.00 45.09 4.26
362 384 2.416260 GAGCCGCCGTAACCCTAG 59.584 66.667 0.00 0.00 0.00 3.02
363 385 3.786901 GAGCCGCCGTAACCCTAGC 62.787 68.421 0.00 0.00 0.00 3.42
570 608 9.900112 ATCTGACCCCTTCTATTTTAGTACTAT 57.100 33.333 2.79 0.00 0.00 2.12
571 609 9.725206 TCTGACCCCTTCTATTTTAGTACTATT 57.275 33.333 2.79 0.00 0.00 1.73
589 703 8.088981 AGTACTATTAGTATTGTACATGCTGCC 58.911 37.037 6.82 0.00 42.05 4.85
591 705 2.691409 AGTATTGTACATGCTGCCGT 57.309 45.000 0.00 0.00 0.00 5.68
617 731 4.084118 GGATCTTCAGATGTATTTCGCTGC 60.084 45.833 0.00 0.00 34.37 5.25
638 752 4.200092 GCCTATTACCCTCAAACTTCTGG 58.800 47.826 0.00 0.00 0.00 3.86
647 761 3.251004 CCTCAAACTTCTGGTGTTACTGC 59.749 47.826 0.00 0.00 0.00 4.40
654 768 4.141711 ACTTCTGGTGTTACTGCTTTCAGA 60.142 41.667 0.00 0.00 42.95 3.27
675 789 6.209589 TCAGAATAGTGTCACTAAGAGCAGTT 59.790 38.462 16.50 4.80 33.89 3.16
683 797 8.410141 AGTGTCACTAAGAGCAGTTATTCTATC 58.590 37.037 2.87 0.00 0.00 2.08
738 886 3.545633 CCTCTTCGCTTCAAAAGAAACG 58.454 45.455 0.00 0.00 31.45 3.60
749 897 6.612247 TTCAAAAGAAACGCAGATCTGTTA 57.388 33.333 23.38 0.00 0.00 2.41
767 915 0.179048 TATGTCCAAGATGCAGGCGG 60.179 55.000 0.00 0.00 0.00 6.13
781 929 2.125952 GCGGGTCCTGCAATTTGC 60.126 61.111 18.40 14.49 45.29 3.68
876 1288 7.841729 TGGGATTAAATTATGCTTACCTTTCCA 59.158 33.333 0.00 0.00 0.00 3.53
910 1328 6.459670 TGCATCGAGGTTCAGTATACTAAA 57.540 37.500 4.74 0.00 0.00 1.85
1177 1598 0.530744 TCGTCTCCCTGTCAAATCCG 59.469 55.000 0.00 0.00 0.00 4.18
1211 1632 1.301401 CCGTTTGTCGCTCTTGGGA 60.301 57.895 0.00 0.00 38.35 4.37
1562 2007 1.337384 GGGTTGGGATTTGATGCCCC 61.337 60.000 0.00 0.00 44.03 5.80
2037 7335 0.175760 GCTCTGGTGATTGGACGCTA 59.824 55.000 0.00 0.00 0.00 4.26
2486 7804 5.234543 GGATATCAGTTAGCTGGTTTCGAAC 59.765 44.000 6.75 0.00 42.78 3.95
2491 7809 3.052036 GTTAGCTGGTTTCGAACGTGTA 58.948 45.455 0.00 0.00 0.00 2.90
2501 7819 0.160182 CGAACGTGTACGGCAGAAAC 59.840 55.000 9.40 0.00 44.95 2.78
2563 7881 1.599542 GCTACATGAAGAATCGGGTGC 59.400 52.381 0.00 0.00 0.00 5.01
2595 7913 9.213799 TGTTTTGCTTTGTTCTAAAATTTGAGT 57.786 25.926 2.35 0.00 0.00 3.41
2637 7955 5.467035 AATATGTTGGGTGGTTCAGTTTG 57.533 39.130 0.00 0.00 0.00 2.93
2689 8007 5.755849 AGTTCCTTCTTGAAGTTCTTTCCA 58.244 37.500 4.17 0.00 34.77 3.53
2696 8014 8.579863 CCTTCTTGAAGTTCTTTCCAAATACAT 58.420 33.333 4.17 0.00 34.77 2.29
2740 8062 4.910195 TCTGATTTGGTTGCATACTGTCT 58.090 39.130 0.00 0.00 0.00 3.41
2783 8105 0.178967 TTGCCCTGCAAGAATCACCA 60.179 50.000 0.00 0.00 43.99 4.17
2806 8128 3.146104 AGCAACTGCATTGTACTCCTT 57.854 42.857 4.22 0.00 45.16 3.36
2886 8210 6.558775 TCCTGCCAACATAGAATAATACTCCT 59.441 38.462 0.00 0.00 0.00 3.69
2887 8211 6.876257 CCTGCCAACATAGAATAATACTCCTC 59.124 42.308 0.00 0.00 0.00 3.71
2888 8212 7.373617 TGCCAACATAGAATAATACTCCTCA 57.626 36.000 0.00 0.00 0.00 3.86
2890 8214 8.439971 TGCCAACATAGAATAATACTCCTCATT 58.560 33.333 0.00 0.00 0.00 2.57
2891 8215 8.725148 GCCAACATAGAATAATACTCCTCATTG 58.275 37.037 0.00 0.00 0.00 2.82
2892 8216 8.725148 CCAACATAGAATAATACTCCTCATTGC 58.275 37.037 0.00 0.00 0.00 3.56
2893 8217 8.725148 CAACATAGAATAATACTCCTCATTGCC 58.275 37.037 0.00 0.00 0.00 4.52
2894 8218 7.977818 ACATAGAATAATACTCCTCATTGCCA 58.022 34.615 0.00 0.00 0.00 4.92
2895 8219 8.439971 ACATAGAATAATACTCCTCATTGCCAA 58.560 33.333 0.00 0.00 0.00 4.52
2896 8220 8.725148 CATAGAATAATACTCCTCATTGCCAAC 58.275 37.037 0.00 0.00 0.00 3.77
2898 8222 7.293073 AGAATAATACTCCTCATTGCCAACAT 58.707 34.615 0.00 0.00 0.00 2.71
2899 8223 8.439971 AGAATAATACTCCTCATTGCCAACATA 58.560 33.333 0.00 0.00 0.00 2.29
2900 8224 8.627208 AATAATACTCCTCATTGCCAACATAG 57.373 34.615 0.00 0.00 0.00 2.23
2901 8225 5.894298 ATACTCCTCATTGCCAACATAGA 57.106 39.130 0.00 0.00 0.00 1.98
2904 8228 5.513233 ACTCCTCATTGCCAACATAGAAAT 58.487 37.500 0.00 0.00 0.00 2.17
2905 8229 5.591877 ACTCCTCATTGCCAACATAGAAATC 59.408 40.000 0.00 0.00 0.00 2.17
2911 8238 9.512435 CTCATTGCCAACATAGAAATCTTTTAG 57.488 33.333 0.00 0.00 0.00 1.85
2927 8254 7.689446 ATCTTTTAGAAGTTACAAAGGGAGC 57.311 36.000 0.00 0.00 34.41 4.70
2928 8255 6.597562 TCTTTTAGAAGTTACAAAGGGAGCA 58.402 36.000 0.00 0.00 34.41 4.26
2929 8256 7.231467 TCTTTTAGAAGTTACAAAGGGAGCAT 58.769 34.615 0.00 0.00 34.41 3.79
2930 8257 8.380099 TCTTTTAGAAGTTACAAAGGGAGCATA 58.620 33.333 0.00 0.00 34.41 3.14
2936 8263 7.934120 AGAAGTTACAAAGGGAGCATATATGTC 59.066 37.037 14.14 9.89 0.00 3.06
2953 8280 1.338655 TGTCGAGAATGACACGGTTGA 59.661 47.619 0.00 0.00 43.62 3.18
3025 8354 9.296400 GATCTTTTGCTGTTTTGTTTGTTAGTA 57.704 29.630 0.00 0.00 0.00 1.82
3059 8388 2.957402 AATGGGCACTCTCAACTGAA 57.043 45.000 0.00 0.00 0.00 3.02
3138 8564 4.582869 ACTGAAAGCTGCAACATAGATCA 58.417 39.130 1.02 0.00 37.60 2.92
3148 8574 4.883585 TGCAACATAGATCATCAAAGGTCC 59.116 41.667 0.00 0.00 0.00 4.46
3149 8575 5.128919 GCAACATAGATCATCAAAGGTCCT 58.871 41.667 0.00 0.00 0.00 3.85
3150 8576 5.591877 GCAACATAGATCATCAAAGGTCCTT 59.408 40.000 0.00 0.00 0.00 3.36
3151 8577 6.459298 GCAACATAGATCATCAAAGGTCCTTG 60.459 42.308 4.45 0.00 0.00 3.61
3152 8578 5.688807 ACATAGATCATCAAAGGTCCTTGG 58.311 41.667 4.45 1.37 0.00 3.61
3153 8579 5.429762 ACATAGATCATCAAAGGTCCTTGGA 59.570 40.000 11.33 11.33 0.00 3.53
3154 8580 6.102321 ACATAGATCATCAAAGGTCCTTGGAT 59.898 38.462 15.01 15.01 34.75 3.41
3155 8581 7.293299 ACATAGATCATCAAAGGTCCTTGGATA 59.707 37.037 19.52 9.95 32.34 2.59
3156 8582 5.934781 AGATCATCAAAGGTCCTTGGATAC 58.065 41.667 19.52 13.93 32.34 2.24
3157 8583 4.137116 TCATCAAAGGTCCTTGGATACG 57.863 45.455 19.52 9.94 32.34 3.06
3158 8584 2.396590 TCAAAGGTCCTTGGATACGC 57.603 50.000 4.45 0.00 42.51 4.42
3159 8585 1.065709 TCAAAGGTCCTTGGATACGCC 60.066 52.381 4.45 0.00 42.51 5.68
3160 8586 0.107848 AAAGGTCCTTGGATACGCCG 60.108 55.000 4.45 0.00 40.66 6.46
3161 8587 0.974010 AAGGTCCTTGGATACGCCGA 60.974 55.000 2.38 0.00 40.66 5.54
3162 8588 1.067582 GGTCCTTGGATACGCCGAG 59.932 63.158 0.00 0.00 46.39 4.63
3163 8589 1.673808 GGTCCTTGGATACGCCGAGT 61.674 60.000 0.00 0.00 45.51 4.18
3164 8590 0.527817 GTCCTTGGATACGCCGAGTG 60.528 60.000 0.00 0.00 45.51 3.51
3165 8591 1.883084 CCTTGGATACGCCGAGTGC 60.883 63.158 0.00 0.00 45.51 4.40
3166 8592 1.153647 CTTGGATACGCCGAGTGCA 60.154 57.895 0.00 0.00 42.46 4.57
3167 8593 0.739462 CTTGGATACGCCGAGTGCAA 60.739 55.000 0.00 0.00 42.46 4.08
3168 8594 0.320858 TTGGATACGCCGAGTGCAAA 60.321 50.000 0.00 0.00 41.33 3.68
3169 8595 0.320858 TGGATACGCCGAGTGCAAAA 60.321 50.000 0.00 0.00 41.33 2.44
3170 8596 0.096454 GGATACGCCGAGTGCAAAAC 59.904 55.000 0.00 0.00 41.33 2.43
3171 8597 0.793861 GATACGCCGAGTGCAAAACA 59.206 50.000 0.00 0.00 41.33 2.83
3172 8598 1.195900 GATACGCCGAGTGCAAAACAA 59.804 47.619 0.00 0.00 41.33 2.83
3173 8599 1.231221 TACGCCGAGTGCAAAACAAT 58.769 45.000 0.00 0.00 41.33 2.71
3174 8600 1.231221 ACGCCGAGTGCAAAACAATA 58.769 45.000 0.00 0.00 41.33 1.90
3175 8601 1.604755 ACGCCGAGTGCAAAACAATAA 59.395 42.857 0.00 0.00 41.33 1.40
3176 8602 2.227865 ACGCCGAGTGCAAAACAATAAT 59.772 40.909 0.00 0.00 41.33 1.28
3177 8603 3.437395 ACGCCGAGTGCAAAACAATAATA 59.563 39.130 0.00 0.00 41.33 0.98
3178 8604 4.083217 ACGCCGAGTGCAAAACAATAATAA 60.083 37.500 0.00 0.00 41.33 1.40
3179 8605 4.854291 CGCCGAGTGCAAAACAATAATAAA 59.146 37.500 0.00 0.00 41.33 1.40
3180 8606 5.343593 CGCCGAGTGCAAAACAATAATAAAA 59.656 36.000 0.00 0.00 41.33 1.52
3181 8607 6.129062 CGCCGAGTGCAAAACAATAATAAAAA 60.129 34.615 0.00 0.00 41.33 1.94
3182 8608 7.411372 CGCCGAGTGCAAAACAATAATAAAAAT 60.411 33.333 0.00 0.00 41.33 1.82
3183 8609 8.865001 GCCGAGTGCAAAACAATAATAAAAATA 58.135 29.630 0.00 0.00 40.77 1.40
3237 8663 8.486942 TCAAGATTATTATTACTCGAAGGGGA 57.513 34.615 0.00 0.00 0.00 4.81
3238 8664 8.930527 TCAAGATTATTATTACTCGAAGGGGAA 58.069 33.333 0.00 0.00 0.00 3.97
3239 8665 9.726438 CAAGATTATTATTACTCGAAGGGGAAT 57.274 33.333 0.00 0.00 0.00 3.01
3248 8674 5.135508 ACTCGAAGGGGAATATATTGACG 57.864 43.478 1.78 0.50 0.00 4.35
3249 8675 4.021368 ACTCGAAGGGGAATATATTGACGG 60.021 45.833 1.78 0.00 0.00 4.79
3250 8676 4.154176 TCGAAGGGGAATATATTGACGGA 58.846 43.478 1.78 0.00 0.00 4.69
3251 8677 4.021719 TCGAAGGGGAATATATTGACGGAC 60.022 45.833 1.78 0.00 0.00 4.79
3252 8678 4.262292 CGAAGGGGAATATATTGACGGACA 60.262 45.833 1.78 0.00 0.00 4.02
3253 8679 4.618920 AGGGGAATATATTGACGGACAC 57.381 45.455 1.78 0.00 0.00 3.67
3254 8680 4.232091 AGGGGAATATATTGACGGACACT 58.768 43.478 1.78 0.00 0.00 3.55
3255 8681 4.040461 AGGGGAATATATTGACGGACACTG 59.960 45.833 1.78 0.00 0.00 3.66
3256 8682 4.202326 GGGGAATATATTGACGGACACTGT 60.202 45.833 1.78 0.00 0.00 3.55
3257 8683 4.750098 GGGAATATATTGACGGACACTGTG 59.250 45.833 6.19 6.19 0.00 3.66
3258 8684 5.452776 GGGAATATATTGACGGACACTGTGA 60.453 44.000 15.86 0.00 0.00 3.58
3259 8685 5.462398 GGAATATATTGACGGACACTGTGAC 59.538 44.000 15.86 8.38 0.00 3.67
3260 8686 2.736144 TATTGACGGACACTGTGACC 57.264 50.000 15.86 16.81 0.00 4.02
3265 8691 2.665185 GGACACTGTGACCGTGGC 60.665 66.667 15.86 8.28 39.70 5.01
3266 8692 2.108157 GACACTGTGACCGTGGCA 59.892 61.111 15.86 0.00 40.16 4.92
3267 8693 2.203015 ACACTGTGACCGTGGCAC 60.203 61.111 15.86 7.79 36.71 5.01
3268 8694 2.108976 CACTGTGACCGTGGCACT 59.891 61.111 16.72 0.00 37.18 4.40
3269 8695 1.365999 CACTGTGACCGTGGCACTA 59.634 57.895 16.72 0.00 37.18 2.74
3270 8696 0.037326 CACTGTGACCGTGGCACTAT 60.037 55.000 16.72 2.80 37.18 2.12
3271 8697 0.685097 ACTGTGACCGTGGCACTATT 59.315 50.000 16.72 0.00 37.18 1.73
3272 8698 1.897133 ACTGTGACCGTGGCACTATTA 59.103 47.619 16.72 0.00 37.18 0.98
3273 8699 2.268298 CTGTGACCGTGGCACTATTAC 58.732 52.381 16.72 10.53 37.18 1.89
3274 8700 1.897133 TGTGACCGTGGCACTATTACT 59.103 47.619 16.72 0.00 37.18 2.24
3275 8701 2.268298 GTGACCGTGGCACTATTACTG 58.732 52.381 16.72 0.00 33.57 2.74
3276 8702 1.287425 GACCGTGGCACTATTACTGC 58.713 55.000 16.72 0.00 0.00 4.40
3281 8707 2.690326 GGCACTATTACTGCCGGTG 58.310 57.895 1.90 0.00 44.78 4.94
3282 8708 1.436983 GGCACTATTACTGCCGGTGC 61.437 60.000 1.90 0.51 44.78 5.01
3283 8709 1.436983 GCACTATTACTGCCGGTGCC 61.437 60.000 1.90 0.00 44.87 5.01
3284 8710 0.107897 CACTATTACTGCCGGTGCCA 60.108 55.000 1.90 0.00 36.33 4.92
3285 8711 0.178068 ACTATTACTGCCGGTGCCAG 59.822 55.000 1.90 4.44 36.33 4.85
3286 8712 1.153249 TATTACTGCCGGTGCCAGC 60.153 57.895 1.90 0.00 36.33 4.85
3287 8713 1.622607 TATTACTGCCGGTGCCAGCT 61.623 55.000 1.90 0.00 36.33 4.24
3288 8714 2.876368 ATTACTGCCGGTGCCAGCTC 62.876 60.000 1.90 0.00 36.33 4.09
3292 8718 4.479993 GCCGGTGCCAGCTCTGAT 62.480 66.667 1.90 0.00 0.00 2.90
3293 8719 2.270205 CCGGTGCCAGCTCTGATT 59.730 61.111 0.00 0.00 0.00 2.57
3294 8720 1.377725 CCGGTGCCAGCTCTGATTT 60.378 57.895 0.00 0.00 0.00 2.17
3295 8721 0.962356 CCGGTGCCAGCTCTGATTTT 60.962 55.000 0.00 0.00 0.00 1.82
3296 8722 0.883833 CGGTGCCAGCTCTGATTTTT 59.116 50.000 0.00 0.00 0.00 1.94
3312 8738 2.859526 TTTTTGTTGATGAGCGCACA 57.140 40.000 10.65 10.65 0.00 4.57
3313 8739 2.118228 TTTTGTTGATGAGCGCACAC 57.882 45.000 10.42 5.11 0.00 3.82
3314 8740 1.020437 TTTGTTGATGAGCGCACACA 58.980 45.000 10.42 7.80 0.00 3.72
3315 8741 1.237533 TTGTTGATGAGCGCACACAT 58.762 45.000 10.42 11.95 0.00 3.21
3316 8742 2.091852 TGTTGATGAGCGCACACATA 57.908 45.000 10.42 0.00 0.00 2.29
3317 8743 1.731709 TGTTGATGAGCGCACACATAC 59.268 47.619 10.42 8.70 0.00 2.39
3318 8744 1.731709 GTTGATGAGCGCACACATACA 59.268 47.619 10.42 5.77 0.00 2.29
3319 8745 1.358877 TGATGAGCGCACACATACAC 58.641 50.000 10.42 1.67 0.00 2.90
3320 8746 0.652592 GATGAGCGCACACATACACC 59.347 55.000 10.42 0.00 0.00 4.16
3321 8747 1.083806 ATGAGCGCACACATACACCG 61.084 55.000 10.42 0.00 0.00 4.94
3322 8748 3.083600 GAGCGCACACATACACCGC 62.084 63.158 11.47 0.00 44.47 5.68
3323 8749 4.160635 GCGCACACATACACCGCC 62.161 66.667 0.30 0.00 38.84 6.13
3324 8750 3.848830 CGCACACATACACCGCCG 61.849 66.667 0.00 0.00 0.00 6.46
3325 8751 4.160635 GCACACATACACCGCCGC 62.161 66.667 0.00 0.00 0.00 6.53
3326 8752 3.496131 CACACATACACCGCCGCC 61.496 66.667 0.00 0.00 0.00 6.13
3327 8753 4.010224 ACACATACACCGCCGCCA 62.010 61.111 0.00 0.00 0.00 5.69
3328 8754 3.496131 CACATACACCGCCGCCAC 61.496 66.667 0.00 0.00 0.00 5.01
3329 8755 4.770874 ACATACACCGCCGCCACC 62.771 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.958822 CGGAAAAGGAAACCACCTGG 59.041 55.000 0.00 0.00 40.49 4.45
18 19 0.958822 CCGGAAAAGGAAACCACCTG 59.041 55.000 0.00 0.00 40.49 4.00
19 20 0.178973 CCCGGAAAAGGAAACCACCT 60.179 55.000 0.73 0.00 42.69 4.00
20 21 0.468585 ACCCGGAAAAGGAAACCACC 60.469 55.000 0.73 0.00 0.00 4.61
21 22 0.671796 CACCCGGAAAAGGAAACCAC 59.328 55.000 0.73 0.00 0.00 4.16
22 23 0.468400 CCACCCGGAAAAGGAAACCA 60.468 55.000 0.73 0.00 0.00 3.67
23 24 1.812686 GCCACCCGGAAAAGGAAACC 61.813 60.000 0.73 0.00 0.00 3.27
24 25 1.663739 GCCACCCGGAAAAGGAAAC 59.336 57.895 0.73 0.00 0.00 2.78
25 26 1.532078 GGCCACCCGGAAAAGGAAA 60.532 57.895 0.73 0.00 0.00 3.13
26 27 2.116556 GGCCACCCGGAAAAGGAA 59.883 61.111 0.73 0.00 0.00 3.36
42 43 2.374830 CTGGGATCACTAGCCAGCGG 62.375 65.000 0.00 0.00 30.46 5.52
43 44 1.068753 CTGGGATCACTAGCCAGCG 59.931 63.158 0.00 0.00 30.46 5.18
44 45 1.449353 CCTGGGATCACTAGCCAGC 59.551 63.158 8.93 0.00 30.46 4.85
45 46 2.049627 GCCCTGGGATCACTAGCCAG 62.050 65.000 19.27 7.73 30.46 4.85
46 47 2.072487 GCCCTGGGATCACTAGCCA 61.072 63.158 19.27 0.00 30.46 4.75
47 48 2.832498 GCCCTGGGATCACTAGCC 59.168 66.667 19.27 0.00 0.00 3.93
48 49 2.423446 CGCCCTGGGATCACTAGC 59.577 66.667 19.27 0.00 0.00 3.42
49 50 3.142393 CCGCCCTGGGATCACTAG 58.858 66.667 19.27 0.00 0.00 2.57
50 51 3.161450 GCCGCCCTGGGATCACTA 61.161 66.667 19.27 0.00 38.63 2.74
73 74 4.849329 CGGACGCGTCTAGTGGGC 62.849 72.222 35.50 17.90 33.90 5.36
74 75 1.647545 TTACGGACGCGTCTAGTGGG 61.648 60.000 33.83 21.88 33.90 4.61
75 76 0.522076 GTTACGGACGCGTCTAGTGG 60.522 60.000 33.83 23.19 33.90 4.00
76 77 0.445436 AGTTACGGACGCGTCTAGTG 59.555 55.000 33.83 25.45 0.00 2.74
77 78 2.010145 TAGTTACGGACGCGTCTAGT 57.990 50.000 35.50 32.99 0.00 2.57
78 79 3.599046 ATTAGTTACGGACGCGTCTAG 57.401 47.619 35.50 29.82 0.00 2.43
79 80 4.260620 GGTAATTAGTTACGGACGCGTCTA 60.261 45.833 35.50 20.35 40.89 2.59
80 81 2.927553 AATTAGTTACGGACGCGTCT 57.072 45.000 35.50 21.43 0.00 4.18
81 82 2.783832 GGTAATTAGTTACGGACGCGTC 59.216 50.000 30.67 30.67 40.89 5.19
82 83 2.479560 GGGTAATTAGTTACGGACGCGT 60.480 50.000 13.85 13.85 40.89 6.01
83 84 2.119457 GGGTAATTAGTTACGGACGCG 58.881 52.381 3.53 3.53 40.89 6.01
84 85 2.159114 TGGGGTAATTAGTTACGGACGC 60.159 50.000 2.44 0.00 40.89 5.19
85 86 3.799281 TGGGGTAATTAGTTACGGACG 57.201 47.619 2.44 0.00 40.89 4.79
86 87 5.059161 GGATTGGGGTAATTAGTTACGGAC 58.941 45.833 2.44 0.00 40.89 4.79
87 88 4.970640 AGGATTGGGGTAATTAGTTACGGA 59.029 41.667 2.44 0.00 40.89 4.69
88 89 5.163280 TGAGGATTGGGGTAATTAGTTACGG 60.163 44.000 2.44 0.00 40.89 4.02
89 90 5.756833 GTGAGGATTGGGGTAATTAGTTACG 59.243 44.000 2.44 0.00 40.89 3.18
111 112 9.627657 CCGTTGTCGTTAATTACATTATTAGTG 57.372 33.333 0.00 0.00 35.01 2.74
151 152 8.256611 ACATCAAAGATTGGCATCGTATATAC 57.743 34.615 2.53 2.53 34.17 1.47
199 200 1.888512 TGTCGGAAGGGGCGTATATAC 59.111 52.381 2.53 2.53 0.00 1.47
201 202 0.966920 CTGTCGGAAGGGGCGTATAT 59.033 55.000 0.00 0.00 0.00 0.86
202 203 0.106569 TCTGTCGGAAGGGGCGTATA 60.107 55.000 0.00 0.00 0.00 1.47
203 204 1.380785 TCTGTCGGAAGGGGCGTAT 60.381 57.895 0.00 0.00 0.00 3.06
204 205 2.036098 TCTGTCGGAAGGGGCGTA 59.964 61.111 0.00 0.00 0.00 4.42
207 208 2.523453 GAAGGTCTGTCGGAAGGGGC 62.523 65.000 0.00 0.00 0.00 5.80
210 231 1.618837 TGAAGAAGGTCTGTCGGAAGG 59.381 52.381 0.00 0.00 0.00 3.46
223 244 2.029470 AGTGGCGAGAGACTTGAAGAAG 60.029 50.000 0.00 0.00 42.42 2.85
224 245 1.964223 AGTGGCGAGAGACTTGAAGAA 59.036 47.619 0.00 0.00 42.42 2.52
225 246 1.542030 GAGTGGCGAGAGACTTGAAGA 59.458 52.381 0.00 0.00 42.42 2.87
266 287 6.493802 GGAAGGGGATTATTTAGGTTGGAATC 59.506 42.308 0.00 0.00 0.00 2.52
296 317 2.080693 CGGGAGAGACGGAGAGATATG 58.919 57.143 0.00 0.00 0.00 1.78
570 608 3.868661 CACGGCAGCATGTACAATACTAA 59.131 43.478 0.00 0.00 39.31 2.24
571 609 3.453424 CACGGCAGCATGTACAATACTA 58.547 45.455 0.00 0.00 39.31 1.82
589 703 4.342862 AATACATCTGAAGATCCCCACG 57.657 45.455 0.00 0.00 31.21 4.94
591 705 4.743651 GCGAAATACATCTGAAGATCCCCA 60.744 45.833 0.00 0.00 31.21 4.96
617 731 5.186198 CACCAGAAGTTTGAGGGTAATAGG 58.814 45.833 0.00 0.00 0.00 2.57
638 752 6.423905 TGACACTATTCTGAAAGCAGTAACAC 59.576 38.462 0.00 0.00 42.84 3.32
647 761 7.093354 TGCTCTTAGTGACACTATTCTGAAAG 58.907 38.462 15.93 10.32 29.64 2.62
654 768 8.754080 AGAATAACTGCTCTTAGTGACACTATT 58.246 33.333 15.93 8.12 29.64 1.73
683 797 8.122472 ACCCAACTATGATTTTACCTTGAAAG 57.878 34.615 0.00 0.00 0.00 2.62
702 849 0.250513 AGAGGCAAGATCGACCCAAC 59.749 55.000 0.00 0.00 0.00 3.77
738 886 4.024218 GCATCTTGGACATAACAGATCTGC 60.024 45.833 22.83 4.94 0.00 4.26
749 897 1.452651 CCGCCTGCATCTTGGACAT 60.453 57.895 0.00 0.00 0.00 3.06
883 1295 6.625362 AGTATACTGAACCTCGATGCATATG 58.375 40.000 4.10 0.00 0.00 1.78
910 1328 6.321181 ACACACACATAGGAACAATTTGAGTT 59.679 34.615 2.79 0.00 0.00 3.01
993 1411 0.964860 TGCCACCCATCATTTCACCG 60.965 55.000 0.00 0.00 0.00 4.94
1211 1632 1.202330 CTTGGAGGAGAGGAGTGCAT 58.798 55.000 0.00 0.00 0.00 3.96
1562 2007 2.824341 ACTACCTTGTACTCCCTTGTCG 59.176 50.000 0.00 0.00 0.00 4.35
2037 7335 4.024893 CCGGACAAATCGATTCGATGATTT 60.025 41.667 21.37 10.77 46.30 2.17
2190 7500 6.412362 CAGCTAGGATCATAGGTGTAAACT 57.588 41.667 29.28 9.73 43.22 2.66
2374 7689 6.935208 ACCTTTTAGCTTGGAGTAGTAGTTTG 59.065 38.462 0.00 0.00 0.00 2.93
2451 7769 8.663209 AGCTAACTGATATCCTGAGAATACAT 57.337 34.615 0.00 0.00 0.00 2.29
2486 7804 0.511221 CTTGGTTTCTGCCGTACACG 59.489 55.000 0.00 0.00 39.44 4.49
2491 7809 0.886490 CAGCTCTTGGTTTCTGCCGT 60.886 55.000 0.00 0.00 0.00 5.68
2501 7819 8.037166 TGTACTATATGCATTATCAGCTCTTGG 58.963 37.037 3.54 0.00 0.00 3.61
2563 7881 3.524541 AGAACAAAGCAAAACAAGCCTG 58.475 40.909 0.00 0.00 0.00 4.85
2620 7938 0.104120 GCCAAACTGAACCACCCAAC 59.896 55.000 0.00 0.00 0.00 3.77
2626 7944 0.823356 GCTCAGGCCAAACTGAACCA 60.823 55.000 5.01 0.00 46.05 3.67
2637 7955 2.101415 ACAAAGAAGTTTTGCTCAGGCC 59.899 45.455 0.00 0.00 37.74 5.19
2689 8007 2.158841 GCACCGTGTGACGAATGTATTT 59.841 45.455 8.04 0.00 46.05 1.40
2696 8014 1.736365 TAGTGGCACCGTGTGACGAA 61.736 55.000 15.27 0.00 45.98 3.85
2746 8068 6.012745 AGGGCAAAAAGTTCAGATGTAAGAT 58.987 36.000 0.00 0.00 0.00 2.40
2766 8088 1.188863 AATGGTGATTCTTGCAGGGC 58.811 50.000 0.00 0.00 0.00 5.19
2783 8105 4.848357 AGGAGTACAATGCAGTTGCTAAT 58.152 39.130 5.62 0.00 41.69 1.73
2806 8128 5.833667 ACCGTTGATATATCTCTGGTTCTCA 59.166 40.000 13.79 0.00 0.00 3.27
2859 8183 7.380423 AGTATTATTCTATGTTGGCAGGAGT 57.620 36.000 0.00 0.00 0.00 3.85
2886 8210 9.241919 TCTAAAAGATTTCTATGTTGGCAATGA 57.758 29.630 1.92 0.00 0.00 2.57
2887 8211 9.859427 TTCTAAAAGATTTCTATGTTGGCAATG 57.141 29.630 1.92 0.00 0.00 2.82
2890 8214 8.635765 ACTTCTAAAAGATTTCTATGTTGGCA 57.364 30.769 0.00 0.00 36.30 4.92
2899 8223 9.862149 TCCCTTTGTAACTTCTAAAAGATTTCT 57.138 29.630 0.00 0.00 36.30 2.52
2901 8225 8.577296 GCTCCCTTTGTAACTTCTAAAAGATTT 58.423 33.333 0.00 0.00 36.30 2.17
2904 8228 6.597562 TGCTCCCTTTGTAACTTCTAAAAGA 58.402 36.000 0.00 0.00 36.30 2.52
2905 8229 6.877611 TGCTCCCTTTGTAACTTCTAAAAG 57.122 37.500 0.00 0.00 38.54 2.27
2911 8238 7.095607 CGACATATATGCTCCCTTTGTAACTTC 60.096 40.741 12.79 0.00 0.00 3.01
2920 8247 5.481824 TCATTCTCGACATATATGCTCCCTT 59.518 40.000 12.79 0.00 0.00 3.95
2927 8254 5.461526 ACCGTGTCATTCTCGACATATATG 58.538 41.667 11.29 11.29 46.98 1.78
2928 8255 5.707242 ACCGTGTCATTCTCGACATATAT 57.293 39.130 0.00 0.00 46.98 0.86
2929 8256 5.066764 TCAACCGTGTCATTCTCGACATATA 59.933 40.000 0.00 0.00 46.98 0.86
2930 8257 4.112634 CAACCGTGTCATTCTCGACATAT 58.887 43.478 0.00 0.00 46.98 1.78
2936 8263 0.716108 GCTCAACCGTGTCATTCTCG 59.284 55.000 0.00 0.00 0.00 4.04
2992 8321 5.304101 ACAAAACAGCAAAAGATCACCCATA 59.696 36.000 0.00 0.00 0.00 2.74
3025 8354 6.010219 AGTGCCCATTTTAAAGATGTACAGT 58.990 36.000 0.33 0.00 0.00 3.55
3082 8411 3.045601 ACAAAGATAAGTGCAGCTCGT 57.954 42.857 0.00 0.00 0.00 4.18
3138 8564 2.421529 GGCGTATCCAAGGACCTTTGAT 60.422 50.000 21.16 21.16 32.06 2.57
3148 8574 3.706140 GCACTCGGCGTATCCAAG 58.294 61.111 6.85 0.00 34.01 3.61
3157 8583 6.698359 TTTTATTATTGTTTTGCACTCGGC 57.302 33.333 0.00 0.00 45.13 5.54
3211 8637 9.101325 TCCCCTTCGAGTAATAATAATCTTGAT 57.899 33.333 0.00 0.00 0.00 2.57
3212 8638 8.486942 TCCCCTTCGAGTAATAATAATCTTGA 57.513 34.615 0.00 0.00 0.00 3.02
3213 8639 9.726438 ATTCCCCTTCGAGTAATAATAATCTTG 57.274 33.333 0.00 0.00 0.00 3.02
3222 8648 8.464404 CGTCAATATATTCCCCTTCGAGTAATA 58.536 37.037 0.00 0.00 0.00 0.98
3223 8649 7.321153 CGTCAATATATTCCCCTTCGAGTAAT 58.679 38.462 0.00 0.00 0.00 1.89
3224 8650 6.294899 CCGTCAATATATTCCCCTTCGAGTAA 60.295 42.308 0.00 0.00 0.00 2.24
3225 8651 5.184479 CCGTCAATATATTCCCCTTCGAGTA 59.816 44.000 0.00 0.00 0.00 2.59
3226 8652 4.021368 CCGTCAATATATTCCCCTTCGAGT 60.021 45.833 0.00 0.00 0.00 4.18
3227 8653 4.219944 TCCGTCAATATATTCCCCTTCGAG 59.780 45.833 0.00 0.00 0.00 4.04
3228 8654 4.021719 GTCCGTCAATATATTCCCCTTCGA 60.022 45.833 0.00 0.00 0.00 3.71
3229 8655 4.243270 GTCCGTCAATATATTCCCCTTCG 58.757 47.826 0.00 0.00 0.00 3.79
3230 8656 4.995487 GTGTCCGTCAATATATTCCCCTTC 59.005 45.833 0.00 0.00 0.00 3.46
3231 8657 4.658901 AGTGTCCGTCAATATATTCCCCTT 59.341 41.667 0.00 0.00 0.00 3.95
3232 8658 4.040461 CAGTGTCCGTCAATATATTCCCCT 59.960 45.833 0.00 0.00 0.00 4.79
3233 8659 4.202326 ACAGTGTCCGTCAATATATTCCCC 60.202 45.833 0.00 0.00 0.00 4.81
3234 8660 4.750098 CACAGTGTCCGTCAATATATTCCC 59.250 45.833 0.00 0.00 0.00 3.97
3235 8661 5.462398 GTCACAGTGTCCGTCAATATATTCC 59.538 44.000 0.00 0.00 0.00 3.01
3236 8662 5.462398 GGTCACAGTGTCCGTCAATATATTC 59.538 44.000 0.67 0.00 0.00 1.75
3237 8663 5.357257 GGTCACAGTGTCCGTCAATATATT 58.643 41.667 0.67 0.00 0.00 1.28
3238 8664 4.499188 CGGTCACAGTGTCCGTCAATATAT 60.499 45.833 25.74 0.00 42.56 0.86
3239 8665 3.181494 CGGTCACAGTGTCCGTCAATATA 60.181 47.826 25.74 0.00 42.56 0.86
3240 8666 2.416836 CGGTCACAGTGTCCGTCAATAT 60.417 50.000 25.74 0.00 42.56 1.28
3241 8667 1.068125 CGGTCACAGTGTCCGTCAATA 60.068 52.381 25.74 0.00 42.56 1.90
3242 8668 0.319555 CGGTCACAGTGTCCGTCAAT 60.320 55.000 25.74 0.00 42.56 2.57
3243 8669 1.066752 CGGTCACAGTGTCCGTCAA 59.933 57.895 25.74 0.00 42.56 3.18
3244 8670 2.725641 CGGTCACAGTGTCCGTCA 59.274 61.111 25.74 0.00 42.56 4.35
3248 8674 2.665185 GCCACGGTCACAGTGTCC 60.665 66.667 7.34 6.76 37.88 4.02
3249 8675 2.108157 TGCCACGGTCACAGTGTC 59.892 61.111 7.34 0.00 37.88 3.67
3250 8676 1.396607 TAGTGCCACGGTCACAGTGT 61.397 55.000 7.34 0.00 37.88 3.55
3251 8677 0.037326 ATAGTGCCACGGTCACAGTG 60.037 55.000 0.30 0.30 36.93 3.66
3252 8678 0.685097 AATAGTGCCACGGTCACAGT 59.315 50.000 11.49 0.00 36.93 3.55
3253 8679 2.094182 AGTAATAGTGCCACGGTCACAG 60.094 50.000 11.49 0.00 36.93 3.66
3254 8680 1.897133 AGTAATAGTGCCACGGTCACA 59.103 47.619 11.49 0.00 36.93 3.58
3255 8681 2.268298 CAGTAATAGTGCCACGGTCAC 58.732 52.381 0.00 3.36 34.80 3.67
3256 8682 1.404986 GCAGTAATAGTGCCACGGTCA 60.405 52.381 8.84 0.00 38.58 4.02
3257 8683 1.287425 GCAGTAATAGTGCCACGGTC 58.713 55.000 8.84 0.00 38.58 4.79
3258 8684 3.453559 GCAGTAATAGTGCCACGGT 57.546 52.632 8.84 0.00 38.58 4.83
3264 8690 2.014594 GCACCGGCAGTAATAGTGC 58.985 57.895 11.43 11.43 45.99 4.40
3265 8691 0.107897 TGGCACCGGCAGTAATAGTG 60.108 55.000 0.00 0.00 43.71 2.74
3266 8692 2.292866 TGGCACCGGCAGTAATAGT 58.707 52.632 0.00 0.00 43.71 2.12
3276 8702 0.962356 AAAATCAGAGCTGGCACCGG 60.962 55.000 0.00 0.00 0.00 5.28
3277 8703 0.883833 AAAAATCAGAGCTGGCACCG 59.116 50.000 0.00 0.00 0.00 4.94
3293 8719 2.159324 TGTGTGCGCTCATCAACAAAAA 60.159 40.909 16.02 0.00 0.00 1.94
3294 8720 1.403323 TGTGTGCGCTCATCAACAAAA 59.597 42.857 16.02 0.00 0.00 2.44
3295 8721 1.020437 TGTGTGCGCTCATCAACAAA 58.980 45.000 16.02 0.00 0.00 2.83
3296 8722 1.237533 ATGTGTGCGCTCATCAACAA 58.762 45.000 16.02 0.00 0.00 2.83
3297 8723 1.731709 GTATGTGTGCGCTCATCAACA 59.268 47.619 17.39 9.08 32.01 3.33
3298 8724 1.731709 TGTATGTGTGCGCTCATCAAC 59.268 47.619 17.39 12.03 32.01 3.18
3299 8725 1.731709 GTGTATGTGTGCGCTCATCAA 59.268 47.619 17.39 5.25 32.01 2.57
3300 8726 1.358877 GTGTATGTGTGCGCTCATCA 58.641 50.000 17.39 14.83 32.01 3.07
3301 8727 0.652592 GGTGTATGTGTGCGCTCATC 59.347 55.000 17.39 9.82 32.01 2.92
3302 8728 1.083806 CGGTGTATGTGTGCGCTCAT 61.084 55.000 16.02 17.90 33.88 2.90
3303 8729 1.736282 CGGTGTATGTGTGCGCTCA 60.736 57.895 9.73 8.97 0.00 4.26
3304 8730 3.081133 CGGTGTATGTGTGCGCTC 58.919 61.111 9.73 5.51 0.00 5.03
3305 8731 3.118454 GCGGTGTATGTGTGCGCT 61.118 61.111 9.73 0.00 0.00 5.92
3306 8732 4.160635 GGCGGTGTATGTGTGCGC 62.161 66.667 0.00 0.00 0.00 6.09
3307 8733 3.848830 CGGCGGTGTATGTGTGCG 61.849 66.667 0.00 0.00 0.00 5.34
3308 8734 4.160635 GCGGCGGTGTATGTGTGC 62.161 66.667 9.78 0.00 0.00 4.57
3309 8735 3.496131 GGCGGCGGTGTATGTGTG 61.496 66.667 9.78 0.00 0.00 3.82
3310 8736 4.010224 TGGCGGCGGTGTATGTGT 62.010 61.111 9.78 0.00 0.00 3.72
3311 8737 3.496131 GTGGCGGCGGTGTATGTG 61.496 66.667 9.78 0.00 0.00 3.21
3312 8738 4.770874 GGTGGCGGCGGTGTATGT 62.771 66.667 9.78 0.00 0.00 2.29
3322 8748 4.335647 AGCAGAAGTGGGTGGCGG 62.336 66.667 0.00 0.00 0.00 6.13
3323 8749 3.052082 CAGCAGAAGTGGGTGGCG 61.052 66.667 0.00 0.00 0.00 5.69
3324 8750 2.674380 CCAGCAGAAGTGGGTGGC 60.674 66.667 0.00 0.00 45.74 5.01
3326 8752 0.179020 TGTTCCAGCAGAAGTGGGTG 60.179 55.000 0.00 0.00 34.29 4.61
3327 8753 0.550914 TTGTTCCAGCAGAAGTGGGT 59.449 50.000 0.00 0.00 34.29 4.51
3328 8754 1.915141 ATTGTTCCAGCAGAAGTGGG 58.085 50.000 0.00 0.00 34.29 4.61
3329 8755 2.029649 CCAATTGTTCCAGCAGAAGTGG 60.030 50.000 4.43 0.00 34.29 4.00
3330 8756 2.608752 GCCAATTGTTCCAGCAGAAGTG 60.609 50.000 4.43 0.00 34.29 3.16
3331 8757 1.615392 GCCAATTGTTCCAGCAGAAGT 59.385 47.619 4.43 0.00 34.29 3.01
3338 8764 3.749665 TTTTCTGGCCAATTGTTCCAG 57.250 42.857 26.15 26.15 46.60 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.