Multiple sequence alignment - TraesCS1B01G410900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G410900 chr1B 100.000 3422 0 0 1 3422 637526163 637522742 0.000000e+00 6320.0
1 TraesCS1B01G410900 chr1B 94.265 2040 89 17 737 2774 663611693 663609680 0.000000e+00 3094.0
2 TraesCS1B01G410900 chr1B 84.913 1604 215 17 814 2410 637621587 637623170 0.000000e+00 1596.0
3 TraesCS1B01G410900 chr1B 86.749 966 126 2 1376 2340 637820242 637819278 0.000000e+00 1074.0
4 TraesCS1B01G410900 chr1B 81.569 1275 218 10 1077 2349 637825370 637824111 0.000000e+00 1037.0
5 TraesCS1B01G410900 chr1B 79.467 1539 231 59 874 2376 637815812 637817301 0.000000e+00 1013.0
6 TraesCS1B01G410900 chr1B 93.798 645 33 5 2780 3420 663609592 663608951 0.000000e+00 963.0
7 TraesCS1B01G410900 chr1B 85.112 356 29 17 150 492 637621077 637621421 3.270000e-90 342.0
8 TraesCS1B01G410900 chr1B 81.351 370 33 19 1 339 663612304 663611940 5.630000e-68 268.0
9 TraesCS1B01G410900 chr1B 88.144 194 8 6 389 579 663611934 663611753 2.070000e-52 217.0
10 TraesCS1B01G410900 chr1B 88.000 50 6 0 305 354 632157800 632157849 3.690000e-05 60.2
11 TraesCS1B01G410900 chr1A 93.267 2733 134 28 692 3391 554221428 554224143 0.000000e+00 3982.0
12 TraesCS1B01G410900 chr1A 82.290 1214 198 8 1129 2340 554526203 554525005 0.000000e+00 1035.0
13 TraesCS1B01G410900 chr1A 96.281 242 7 2 336 577 554221190 554221429 2.470000e-106 396.0
14 TraesCS1B01G410900 chr1A 86.819 349 31 8 2 340 554214684 554215027 3.220000e-100 375.0
15 TraesCS1B01G410900 chr1A 100.000 36 0 0 3385 3420 554224158 554224193 2.200000e-07 67.6
16 TraesCS1B01G410900 chr1D 85.171 1605 210 15 814 2410 462487573 462489157 0.000000e+00 1620.0
17 TraesCS1B01G410900 chr1D 83.492 1363 192 25 987 2339 462719057 462717718 0.000000e+00 1240.0
18 TraesCS1B01G410900 chr1D 94.925 729 36 1 1600 2328 462396184 462396911 0.000000e+00 1140.0
19 TraesCS1B01G410900 chr1D 84.077 986 155 2 1372 2356 462730241 462729257 0.000000e+00 950.0
20 TraesCS1B01G410900 chr1D 87.571 354 25 11 150 493 462487062 462487406 3.200000e-105 392.0
21 TraesCS1B01G410900 chr1D 91.667 192 16 0 873 1064 462396000 462396191 2.020000e-67 267.0
22 TraesCS1B01G410900 chr1D 85.377 212 12 11 150 350 462395392 462395595 5.790000e-48 202.0
23 TraesCS1B01G410900 chr1D 90.210 143 8 4 13 149 462387892 462388034 7.540000e-42 182.0
24 TraesCS1B01G410900 chr1D 80.242 248 40 7 1010 1248 462736689 462736442 9.760000e-41 178.0
25 TraesCS1B01G410900 chr1D 87.805 82 10 0 2403 2484 462396918 462396999 2.810000e-16 97.1
26 TraesCS1B01G410900 chr7B 96.639 119 4 0 576 694 744645533 744645415 7.490000e-47 198.0
27 TraesCS1B01G410900 chr7A 91.489 141 12 0 557 697 721098214 721098354 9.690000e-46 195.0
28 TraesCS1B01G410900 chr7A 91.111 135 12 0 571 705 375886615 375886481 2.100000e-42 183.0
29 TraesCS1B01G410900 chr4D 95.122 123 6 0 571 693 367720892 367720770 9.690000e-46 195.0
30 TraesCS1B01G410900 chr4D 94.309 123 6 1 576 697 367720659 367720537 1.620000e-43 187.0
31 TraesCS1B01G410900 chr4D 85.000 100 13 1 692 789 53760013 53760112 2.170000e-17 100.0
32 TraesCS1B01G410900 chr6A 95.041 121 6 0 575 695 147303659 147303779 1.250000e-44 191.0
33 TraesCS1B01G410900 chr3B 94.309 123 7 0 576 698 658489550 658489672 4.510000e-44 189.0
34 TraesCS1B01G410900 chr3B 83.838 99 10 4 692 789 405783514 405783607 4.700000e-14 89.8
35 TraesCS1B01G410900 chr3D 92.969 128 9 0 573 700 445035253 445035126 1.620000e-43 187.0
36 TraesCS1B01G410900 chr3D 85.859 99 9 4 692 789 313816918 313816824 2.170000e-17 100.0
37 TraesCS1B01G410900 chr2D 93.496 123 6 2 572 693 437903933 437904054 7.540000e-42 182.0
38 TraesCS1B01G410900 chr3A 86.869 99 9 3 692 789 416307129 416307034 1.300000e-19 108.0
39 TraesCS1B01G410900 chr3A 83.838 99 10 5 694 788 514621134 514621230 4.700000e-14 89.8
40 TraesCS1B01G410900 chr4A 86.000 100 12 1 692 789 543368418 543368319 4.670000e-19 106.0
41 TraesCS1B01G410900 chr4B 83.505 97 13 2 692 788 78611522 78611615 1.690000e-13 87.9
42 TraesCS1B01G410900 chr7D 82.653 98 12 5 692 789 94441123 94441215 7.870000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G410900 chr1B 637522742 637526163 3421 True 6320.000000 6320 100.0000 1 3422 1 chr1B.!!$R1 3421
1 TraesCS1B01G410900 chr1B 663608951 663612304 3353 True 1135.500000 3094 89.3895 1 3420 4 chr1B.!!$R3 3419
2 TraesCS1B01G410900 chr1B 637819278 637825370 6092 True 1055.500000 1074 84.1590 1077 2349 2 chr1B.!!$R2 1272
3 TraesCS1B01G410900 chr1B 637815812 637817301 1489 False 1013.000000 1013 79.4670 874 2376 1 chr1B.!!$F2 1502
4 TraesCS1B01G410900 chr1B 637621077 637623170 2093 False 969.000000 1596 85.0125 150 2410 2 chr1B.!!$F3 2260
5 TraesCS1B01G410900 chr1A 554221190 554224193 3003 False 1481.866667 3982 96.5160 336 3420 3 chr1A.!!$F2 3084
6 TraesCS1B01G410900 chr1A 554525005 554526203 1198 True 1035.000000 1035 82.2900 1129 2340 1 chr1A.!!$R1 1211
7 TraesCS1B01G410900 chr1D 462717718 462719057 1339 True 1240.000000 1240 83.4920 987 2339 1 chr1D.!!$R1 1352
8 TraesCS1B01G410900 chr1D 462487062 462489157 2095 False 1006.000000 1620 86.3710 150 2410 2 chr1D.!!$F3 2260
9 TraesCS1B01G410900 chr1D 462729257 462730241 984 True 950.000000 950 84.0770 1372 2356 1 chr1D.!!$R2 984
10 TraesCS1B01G410900 chr1D 462395392 462396999 1607 False 426.525000 1140 89.9435 150 2484 4 chr1D.!!$F2 2334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 251 0.034089 ACCCCAATCCTACAAGCTGC 60.034 55.0 0.00 0.0 0.0 5.25 F
620 950 0.035056 CCCAAGCTTGTCCCTCGAAT 60.035 55.0 24.35 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 7288 0.538057 CACTTCTGGCTTGCCCAAGA 60.538 55.0 20.55 11.16 44.81 3.02 R
2477 7721 0.823460 CACCACAACAGTGCCCTTTT 59.177 50.0 0.00 0.00 31.87 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.882415 ATTTACGATATAAACCGTTGATGTCT 57.118 30.769 4.37 0.00 39.86 3.41
26 27 8.706492 TTTACGATATAAACCGTTGATGTCTT 57.294 30.769 4.37 0.00 39.86 3.01
50 51 3.423154 CGCTTGCAAGGGACGGAC 61.423 66.667 33.36 12.16 41.06 4.79
55 56 1.259142 TTGCAAGGGACGGACGGATA 61.259 55.000 0.00 0.00 0.00 2.59
102 103 0.108615 CGACAGGCCAAGTAGTCAGG 60.109 60.000 5.01 0.00 0.00 3.86
103 104 0.977395 GACAGGCCAAGTAGTCAGGT 59.023 55.000 5.01 0.00 0.00 4.00
105 106 0.250513 CAGGCCAAGTAGTCAGGTCC 59.749 60.000 5.01 0.00 0.00 4.46
106 107 0.910088 AGGCCAAGTAGTCAGGTCCC 60.910 60.000 5.01 0.00 0.00 4.46
117 118 2.363147 AGGTCCCTCGCCACTCTC 60.363 66.667 0.00 0.00 0.00 3.20
133 134 4.504864 CCACTCTCACCAGTTTGTATCCAA 60.505 45.833 0.00 0.00 0.00 3.53
142 143 4.772100 CCAGTTTGTATCCAATTCCAACCT 59.228 41.667 0.00 0.00 0.00 3.50
161 189 6.041069 CCAACCTAAATAATCTCCGTCTCTCT 59.959 42.308 0.00 0.00 0.00 3.10
213 243 1.688269 CCGCCGTAACCCCAATCCTA 61.688 60.000 0.00 0.00 0.00 2.94
218 248 2.285977 CGTAACCCCAATCCTACAAGC 58.714 52.381 0.00 0.00 0.00 4.01
220 250 2.514458 AACCCCAATCCTACAAGCTG 57.486 50.000 0.00 0.00 0.00 4.24
221 251 0.034089 ACCCCAATCCTACAAGCTGC 60.034 55.000 0.00 0.00 0.00 5.25
222 252 0.257039 CCCCAATCCTACAAGCTGCT 59.743 55.000 0.00 0.00 0.00 4.24
223 253 1.673168 CCCAATCCTACAAGCTGCTC 58.327 55.000 1.00 0.00 0.00 4.26
224 254 1.293924 CCAATCCTACAAGCTGCTCG 58.706 55.000 1.00 0.00 0.00 5.03
225 255 1.406069 CCAATCCTACAAGCTGCTCGT 60.406 52.381 1.00 0.00 0.00 4.18
226 256 1.929836 CAATCCTACAAGCTGCTCGTC 59.070 52.381 1.00 0.00 0.00 4.20
227 257 0.101399 ATCCTACAAGCTGCTCGTCG 59.899 55.000 1.00 0.00 0.00 5.12
228 258 0.958876 TCCTACAAGCTGCTCGTCGA 60.959 55.000 1.00 0.00 0.00 4.20
258 297 1.207089 TCCAGTGGATTCGCTTGGTAG 59.793 52.381 8.12 0.00 0.00 3.18
288 328 1.066587 CCTCGCTCGGATCTGTTCC 59.933 63.158 0.42 0.00 41.59 3.62
292 332 0.877649 CGCTCGGATCTGTTCCATGG 60.878 60.000 4.97 4.97 45.78 3.66
324 364 0.895530 TCTTGTCACACGGATCTCCC 59.104 55.000 0.00 0.00 0.00 4.30
539 869 3.014623 GTGTTTAGGTGTCTATTGCCCC 58.985 50.000 0.00 0.00 0.00 5.80
540 870 2.916934 TGTTTAGGTGTCTATTGCCCCT 59.083 45.455 0.00 0.00 0.00 4.79
541 871 3.054655 TGTTTAGGTGTCTATTGCCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
544 874 1.279025 GGTGTCTATTGCCCCTCCCA 61.279 60.000 0.00 0.00 0.00 4.37
545 875 0.181350 GTGTCTATTGCCCCTCCCAG 59.819 60.000 0.00 0.00 0.00 4.45
546 876 1.149401 GTCTATTGCCCCTCCCAGC 59.851 63.158 0.00 0.00 0.00 4.85
549 879 1.140312 CTATTGCCCCTCCCAGCTAA 58.860 55.000 0.00 0.00 0.00 3.09
550 880 1.707427 CTATTGCCCCTCCCAGCTAAT 59.293 52.381 0.00 0.00 0.00 1.73
551 881 1.833187 ATTGCCCCTCCCAGCTAATA 58.167 50.000 0.00 0.00 0.00 0.98
565 895 5.125739 CCCAGCTAATAATAGTACTCCCTCG 59.874 48.000 0.00 0.00 0.00 4.63
567 897 5.125739 CAGCTAATAATAGTACTCCCTCGGG 59.874 48.000 0.00 0.00 0.00 5.14
579 909 0.531200 CCCTCGGGTCACAACTACTC 59.469 60.000 0.00 0.00 0.00 2.59
580 910 0.531200 CCTCGGGTCACAACTACTCC 59.469 60.000 0.00 0.00 0.00 3.85
581 911 0.531200 CTCGGGTCACAACTACTCCC 59.469 60.000 0.00 0.00 35.22 4.30
582 912 0.113776 TCGGGTCACAACTACTCCCT 59.886 55.000 0.00 0.00 36.30 4.20
583 913 0.531200 CGGGTCACAACTACTCCCTC 59.469 60.000 0.00 0.00 36.30 4.30
584 914 0.903236 GGGTCACAACTACTCCCTCC 59.097 60.000 0.00 0.00 35.63 4.30
585 915 1.640917 GGTCACAACTACTCCCTCCA 58.359 55.000 0.00 0.00 0.00 3.86
586 916 2.188817 GGTCACAACTACTCCCTCCAT 58.811 52.381 0.00 0.00 0.00 3.41
587 917 2.168728 GGTCACAACTACTCCCTCCATC 59.831 54.545 0.00 0.00 0.00 3.51
588 918 2.168728 GTCACAACTACTCCCTCCATCC 59.831 54.545 0.00 0.00 0.00 3.51
589 919 1.137086 CACAACTACTCCCTCCATCCG 59.863 57.143 0.00 0.00 0.00 4.18
590 920 1.006758 ACAACTACTCCCTCCATCCGA 59.993 52.381 0.00 0.00 0.00 4.55
591 921 2.108168 CAACTACTCCCTCCATCCGAA 58.892 52.381 0.00 0.00 0.00 4.30
592 922 2.500098 CAACTACTCCCTCCATCCGAAA 59.500 50.000 0.00 0.00 0.00 3.46
593 923 2.829023 ACTACTCCCTCCATCCGAAAA 58.171 47.619 0.00 0.00 0.00 2.29
594 924 3.178865 ACTACTCCCTCCATCCGAAAAA 58.821 45.455 0.00 0.00 0.00 1.94
595 925 2.789409 ACTCCCTCCATCCGAAAAAG 57.211 50.000 0.00 0.00 0.00 2.27
596 926 1.340114 ACTCCCTCCATCCGAAAAAGC 60.340 52.381 0.00 0.00 0.00 3.51
597 927 0.991920 TCCCTCCATCCGAAAAAGCT 59.008 50.000 0.00 0.00 0.00 3.74
598 928 1.354368 TCCCTCCATCCGAAAAAGCTT 59.646 47.619 0.00 0.00 0.00 3.74
599 929 1.474077 CCCTCCATCCGAAAAAGCTTG 59.526 52.381 0.00 0.00 0.00 4.01
600 930 2.162681 CCTCCATCCGAAAAAGCTTGT 58.837 47.619 0.00 0.00 0.00 3.16
601 931 2.162408 CCTCCATCCGAAAAAGCTTGTC 59.838 50.000 0.00 0.00 0.00 3.18
602 932 2.159382 TCCATCCGAAAAAGCTTGTCC 58.841 47.619 0.00 0.00 0.00 4.02
603 933 1.202348 CCATCCGAAAAAGCTTGTCCC 59.798 52.381 0.00 0.00 0.00 4.46
604 934 1.885887 CATCCGAAAAAGCTTGTCCCA 59.114 47.619 0.00 0.00 0.00 4.37
605 935 2.060050 TCCGAAAAAGCTTGTCCCAA 57.940 45.000 0.00 0.00 0.00 4.12
606 936 1.953686 TCCGAAAAAGCTTGTCCCAAG 59.046 47.619 0.00 0.00 0.00 3.61
607 937 1.602920 CCGAAAAAGCTTGTCCCAAGC 60.603 52.381 18.69 18.69 43.31 4.01
613 943 1.959848 GCTTGTCCCAAGCTTGTCC 59.040 57.895 24.35 12.15 40.01 4.02
614 944 1.527433 GCTTGTCCCAAGCTTGTCCC 61.527 60.000 24.35 11.81 40.01 4.46
615 945 0.111253 CTTGTCCCAAGCTTGTCCCT 59.889 55.000 24.35 0.00 0.00 4.20
616 946 0.110486 TTGTCCCAAGCTTGTCCCTC 59.890 55.000 24.35 10.65 0.00 4.30
617 947 1.376037 GTCCCAAGCTTGTCCCTCG 60.376 63.158 24.35 8.31 0.00 4.63
618 948 1.535444 TCCCAAGCTTGTCCCTCGA 60.535 57.895 24.35 7.45 0.00 4.04
619 949 1.125093 TCCCAAGCTTGTCCCTCGAA 61.125 55.000 24.35 0.00 0.00 3.71
620 950 0.035056 CCCAAGCTTGTCCCTCGAAT 60.035 55.000 24.35 0.00 0.00 3.34
621 951 1.089920 CCAAGCTTGTCCCTCGAATG 58.910 55.000 24.35 1.81 0.00 2.67
622 952 1.089920 CAAGCTTGTCCCTCGAATGG 58.910 55.000 18.65 0.00 0.00 3.16
623 953 0.984230 AAGCTTGTCCCTCGAATGGA 59.016 50.000 0.00 0.00 0.00 3.41
624 954 1.207791 AGCTTGTCCCTCGAATGGAT 58.792 50.000 6.62 0.00 33.65 3.41
625 955 1.134280 AGCTTGTCCCTCGAATGGATG 60.134 52.381 6.62 2.88 33.65 3.51
626 956 1.303309 CTTGTCCCTCGAATGGATGC 58.697 55.000 6.62 0.00 33.65 3.91
627 957 0.617935 TTGTCCCTCGAATGGATGCA 59.382 50.000 6.62 0.00 33.65 3.96
628 958 0.839277 TGTCCCTCGAATGGATGCAT 59.161 50.000 0.00 0.00 33.65 3.96
629 959 1.202687 TGTCCCTCGAATGGATGCATC 60.203 52.381 18.81 18.81 33.65 3.91
630 960 1.071385 GTCCCTCGAATGGATGCATCT 59.929 52.381 25.28 6.65 33.65 2.90
631 961 2.300152 GTCCCTCGAATGGATGCATCTA 59.700 50.000 25.28 20.79 33.65 1.98
632 962 2.564504 TCCCTCGAATGGATGCATCTAG 59.435 50.000 25.28 8.89 0.00 2.43
633 963 2.344950 CCTCGAATGGATGCATCTAGC 58.655 52.381 25.28 14.69 45.96 3.42
646 976 4.008539 GCATCTAGCACTAACTTGTTGC 57.991 45.455 0.00 0.00 44.79 4.17
647 977 3.686726 GCATCTAGCACTAACTTGTTGCT 59.313 43.478 0.42 0.42 44.79 3.91
648 978 4.870426 GCATCTAGCACTAACTTGTTGCTA 59.130 41.667 2.76 2.76 44.79 3.49
654 984 6.037786 AGCACTAACTTGTTGCTAGATACA 57.962 37.500 0.00 0.00 33.70 2.29
655 985 6.644347 AGCACTAACTTGTTGCTAGATACAT 58.356 36.000 0.00 0.00 33.70 2.29
656 986 6.758886 AGCACTAACTTGTTGCTAGATACATC 59.241 38.462 0.00 0.00 33.70 3.06
657 987 6.018669 GCACTAACTTGTTGCTAGATACATCC 60.019 42.308 0.00 0.00 0.00 3.51
658 988 7.041721 CACTAACTTGTTGCTAGATACATCCA 58.958 38.462 0.00 0.00 0.00 3.41
659 989 7.712639 CACTAACTTGTTGCTAGATACATCCAT 59.287 37.037 0.00 0.00 0.00 3.41
660 990 8.267894 ACTAACTTGTTGCTAGATACATCCATT 58.732 33.333 0.00 0.00 0.00 3.16
661 991 7.944729 AACTTGTTGCTAGATACATCCATTT 57.055 32.000 0.00 0.00 0.00 2.32
662 992 7.325660 ACTTGTTGCTAGATACATCCATTTG 57.674 36.000 0.00 0.00 0.00 2.32
663 993 7.112122 ACTTGTTGCTAGATACATCCATTTGA 58.888 34.615 0.00 0.00 0.00 2.69
664 994 7.281774 ACTTGTTGCTAGATACATCCATTTGAG 59.718 37.037 0.00 0.00 0.00 3.02
665 995 6.057533 TGTTGCTAGATACATCCATTTGAGG 58.942 40.000 0.00 0.00 0.00 3.86
666 996 5.233083 TGCTAGATACATCCATTTGAGGG 57.767 43.478 0.00 0.00 0.00 4.30
667 997 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
668 998 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
669 999 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
670 1000 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
671 1001 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
672 1002 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
673 1003 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
674 1004 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
675 1005 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
676 1006 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
677 1007 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
678 1008 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
679 1009 4.202243 CCATTTGAGGGACAAGCTTTTTCA 60.202 41.667 0.00 0.00 39.77 2.69
680 1010 4.654091 TTTGAGGGACAAGCTTTTTCAG 57.346 40.909 0.00 0.00 39.77 3.02
681 1011 3.576078 TGAGGGACAAGCTTTTTCAGA 57.424 42.857 0.00 0.00 0.00 3.27
682 1012 3.214328 TGAGGGACAAGCTTTTTCAGAC 58.786 45.455 0.00 0.00 0.00 3.51
683 1013 2.222027 AGGGACAAGCTTTTTCAGACG 58.778 47.619 0.00 0.00 0.00 4.18
684 1014 1.266989 GGGACAAGCTTTTTCAGACGG 59.733 52.381 0.00 0.00 0.00 4.79
685 1015 2.218603 GGACAAGCTTTTTCAGACGGA 58.781 47.619 0.00 0.00 0.00 4.69
686 1016 2.224314 GGACAAGCTTTTTCAGACGGAG 59.776 50.000 0.00 0.00 0.00 4.63
687 1017 2.222027 ACAAGCTTTTTCAGACGGAGG 58.778 47.619 0.00 0.00 0.00 4.30
688 1018 1.537202 CAAGCTTTTTCAGACGGAGGG 59.463 52.381 0.00 0.00 0.00 4.30
689 1019 1.056660 AGCTTTTTCAGACGGAGGGA 58.943 50.000 0.00 0.00 0.00 4.20
690 1020 1.002544 AGCTTTTTCAGACGGAGGGAG 59.997 52.381 0.00 0.00 0.00 4.30
691 1021 1.270893 GCTTTTTCAGACGGAGGGAGT 60.271 52.381 0.00 0.00 0.00 3.85
699 1029 5.837770 TCAGACGGAGGGAGTATAAGATA 57.162 43.478 0.00 0.00 0.00 1.98
701 1031 6.416415 TCAGACGGAGGGAGTATAAGATATC 58.584 44.000 0.00 0.00 0.00 1.63
789 1134 9.696917 GTCCATATTGAAATATCCAAAACATCC 57.303 33.333 0.00 0.00 29.35 3.51
790 1135 9.431690 TCCATATTGAAATATCCAAAACATCCA 57.568 29.630 0.00 0.00 29.35 3.41
803 1148 8.966069 TCCAAAACATCCAATATATACGAACA 57.034 30.769 0.00 0.00 0.00 3.18
806 1151 7.416154 AAACATCCAATATATACGAACACGG 57.584 36.000 0.00 0.00 0.00 4.94
836 1181 8.571336 GGAAGTACTAATAGCAGTCGGTTTATA 58.429 37.037 0.00 0.00 0.00 0.98
906 1261 4.604843 ATGTGCATTGACGTTCACTATG 57.395 40.909 0.00 0.00 0.00 2.23
1006 1362 1.640149 ACATTGGTGGTGGGATGATGA 59.360 47.619 0.00 0.00 0.00 2.92
1118 1480 3.000041 CCGTTATAGCTCTTTGTGCACA 59.000 45.455 17.42 17.42 0.00 4.57
1354 1719 1.294659 CTCACCGTCAAGCTCAAGCC 61.295 60.000 0.00 0.00 43.38 4.35
1620 1994 6.718454 GGTTGATCAATGGGTTATCTGATGAT 59.282 38.462 12.12 0.00 36.74 2.45
2067 7288 6.389906 GTCCCTCAAACATCGAATTGATTTT 58.610 36.000 10.78 0.00 35.20 1.82
2068 7289 6.528072 GTCCCTCAAACATCGAATTGATTTTC 59.472 38.462 10.78 2.47 35.20 2.29
2078 7299 3.368843 CGAATTGATTTTCTTGGGCAAGC 59.631 43.478 0.00 0.00 38.28 4.01
2166 7387 4.336713 GGGAAGAAGATTGTCATTGCTACC 59.663 45.833 0.00 0.00 0.00 3.18
2250 7477 2.646798 AGTTCTGGAGGCCATTCTTTCT 59.353 45.455 5.01 0.00 30.82 2.52
2389 7632 6.236409 ACCCTGGCTAAGTTAACTAAAGAAC 58.764 40.000 17.77 11.54 0.00 3.01
2390 7633 6.044054 ACCCTGGCTAAGTTAACTAAAGAACT 59.956 38.462 17.77 1.38 37.50 3.01
2396 7639 9.579768 GGCTAAGTTAACTAAAGAACTACTACC 57.420 37.037 17.77 6.62 34.81 3.18
2438 7682 5.119279 CCATGTAGACGATATTTAGCAGTGC 59.881 44.000 7.13 7.13 0.00 4.40
2442 7686 4.770795 AGACGATATTTAGCAGTGCCTTT 58.229 39.130 12.58 0.00 0.00 3.11
2477 7721 6.823689 AGAGTGAAAACTTCAGCTAAAAGACA 59.176 34.615 13.44 6.50 41.01 3.41
2522 7766 5.488919 TCTTCTATCACCCAAGGACTTGAAT 59.511 40.000 13.35 4.59 42.93 2.57
2631 7875 1.279496 TAGCCACTTGATGTCCAGCT 58.721 50.000 0.00 0.00 33.09 4.24
2652 7896 8.233190 CCAGCTTTAGATTTACAAAGAGAACTG 58.767 37.037 0.00 0.00 34.35 3.16
2726 7970 3.758554 GACTTATCCTGTGGTTGTTGCAT 59.241 43.478 0.00 0.00 0.00 3.96
2745 7989 8.739039 TGTTGCATATACCCTTATTGATTATGC 58.261 33.333 0.00 0.00 38.47 3.14
2774 8018 7.454225 AGGAAGCTGAAAGTTAGTCTGTAAAT 58.546 34.615 0.00 0.00 35.30 1.40
2901 8227 6.582636 TCTTATGTTCTTTCATCAGGCGTAT 58.417 36.000 0.00 0.00 0.00 3.06
2915 8241 6.276832 TCAGGCGTATTCTATATTACACCC 57.723 41.667 0.00 0.00 0.00 4.61
2939 8265 8.778358 CCCTTGCTGAATACTGACTATAATTTC 58.222 37.037 0.00 0.00 0.00 2.17
2980 8306 1.212688 CATGAGTTGTATGAGGGGGCA 59.787 52.381 0.00 0.00 0.00 5.36
3045 8371 5.050769 CGTGAATACACATCAGTTCTATGCC 60.051 44.000 0.00 0.00 46.20 4.40
3083 8410 5.527582 GGACGAAAAGGTCATATTGCTATGT 59.472 40.000 0.00 0.00 38.70 2.29
3159 8488 4.685169 TTTAAGCAGTCTGTTAGCATGC 57.315 40.909 10.51 10.51 37.15 4.06
3318 8649 7.231467 TGTTAGACCTCCTTAAAAGCAAGAAT 58.769 34.615 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.201325 CCGATAAGACATCAACGGTTTATATCG 60.201 40.741 8.88 8.88 38.54 2.92
11 12 3.930848 GTCCGATAAGACATCAACGGTTT 59.069 43.478 0.00 0.00 40.93 3.27
25 26 0.742990 CCCTTGCAAGCGTCCGATAA 60.743 55.000 21.43 0.00 0.00 1.75
26 27 1.153449 CCCTTGCAAGCGTCCGATA 60.153 57.895 21.43 0.00 0.00 2.92
55 56 2.286872 CGATACCTGTAGTCTGTCGGT 58.713 52.381 0.00 0.00 0.00 4.69
102 103 2.574399 GTGAGAGTGGCGAGGGAC 59.426 66.667 0.00 0.00 0.00 4.46
103 104 2.680352 GGTGAGAGTGGCGAGGGA 60.680 66.667 0.00 0.00 0.00 4.20
105 106 1.821061 AACTGGTGAGAGTGGCGAGG 61.821 60.000 0.00 0.00 0.00 4.63
106 107 0.034059 AAACTGGTGAGAGTGGCGAG 59.966 55.000 0.00 0.00 0.00 5.03
133 134 7.071321 AGAGACGGAGATTATTTAGGTTGGAAT 59.929 37.037 0.00 0.00 0.00 3.01
161 189 2.743636 AGACTCGATTTTTCTGCCGA 57.256 45.000 0.00 0.00 0.00 5.54
213 243 2.259818 CCTCGACGAGCAGCTTGT 59.740 61.111 19.55 15.81 0.00 3.16
258 297 1.969200 GAGCGAGGTAGGGGGTTTCC 61.969 65.000 0.00 0.00 0.00 3.13
288 328 6.529125 GTGACAAGAACATGAATTAAGCCATG 59.471 38.462 14.66 14.66 44.12 3.66
292 332 5.565259 CGTGTGACAAGAACATGAATTAAGC 59.435 40.000 0.00 0.00 36.80 3.09
324 364 1.181786 AAGGGAAGACGAGAGCAGAG 58.818 55.000 0.00 0.00 0.00 3.35
539 869 6.257586 AGGGAGTACTATTATTAGCTGGGAG 58.742 44.000 0.00 0.00 0.00 4.30
540 870 6.228977 AGGGAGTACTATTATTAGCTGGGA 57.771 41.667 0.00 0.00 0.00 4.37
541 871 5.125739 CGAGGGAGTACTATTATTAGCTGGG 59.874 48.000 0.00 0.00 0.00 4.45
544 874 5.222296 ACCCGAGGGAGTACTATTATTAGCT 60.222 44.000 16.26 0.00 38.96 3.32
545 875 5.015515 ACCCGAGGGAGTACTATTATTAGC 58.984 45.833 16.26 0.00 38.96 3.09
546 876 6.150809 GTGACCCGAGGGAGTACTATTATTAG 59.849 46.154 16.26 0.00 38.96 1.73
549 879 4.141088 TGTGACCCGAGGGAGTACTATTAT 60.141 45.833 16.26 0.00 38.96 1.28
550 880 3.202818 TGTGACCCGAGGGAGTACTATTA 59.797 47.826 16.26 0.00 38.96 0.98
551 881 2.024655 TGTGACCCGAGGGAGTACTATT 60.025 50.000 16.26 0.00 38.96 1.73
565 895 0.903236 GGAGGGAGTAGTTGTGACCC 59.097 60.000 0.00 0.00 40.71 4.46
567 897 2.168728 GGATGGAGGGAGTAGTTGTGAC 59.831 54.545 0.00 0.00 0.00 3.67
579 909 1.474077 CAAGCTTTTTCGGATGGAGGG 59.526 52.381 0.00 0.00 0.00 4.30
580 910 2.162408 GACAAGCTTTTTCGGATGGAGG 59.838 50.000 0.00 0.00 0.00 4.30
581 911 2.162408 GGACAAGCTTTTTCGGATGGAG 59.838 50.000 0.00 0.00 0.00 3.86
582 912 2.159382 GGACAAGCTTTTTCGGATGGA 58.841 47.619 0.00 0.00 0.00 3.41
583 913 1.202348 GGGACAAGCTTTTTCGGATGG 59.798 52.381 0.00 0.00 0.00 3.51
584 914 1.885887 TGGGACAAGCTTTTTCGGATG 59.114 47.619 0.00 0.00 31.92 3.51
585 915 2.286365 TGGGACAAGCTTTTTCGGAT 57.714 45.000 0.00 0.00 31.92 4.18
586 916 3.811031 TGGGACAAGCTTTTTCGGA 57.189 47.368 0.00 0.00 31.92 4.55
598 928 1.761174 GAGGGACAAGCTTGGGACA 59.239 57.895 29.18 0.00 0.00 4.02
599 929 1.376037 CGAGGGACAAGCTTGGGAC 60.376 63.158 29.18 18.90 0.00 4.46
600 930 1.125093 TTCGAGGGACAAGCTTGGGA 61.125 55.000 29.18 13.44 0.00 4.37
601 931 0.035056 ATTCGAGGGACAAGCTTGGG 60.035 55.000 29.18 6.83 0.00 4.12
602 932 1.089920 CATTCGAGGGACAAGCTTGG 58.910 55.000 29.18 11.25 0.00 3.61
603 933 1.089920 CCATTCGAGGGACAAGCTTG 58.910 55.000 24.84 24.84 0.00 4.01
604 934 0.984230 TCCATTCGAGGGACAAGCTT 59.016 50.000 3.95 0.00 0.00 3.74
605 935 1.134280 CATCCATTCGAGGGACAAGCT 60.134 52.381 9.77 0.00 37.23 3.74
606 936 1.303309 CATCCATTCGAGGGACAAGC 58.697 55.000 9.77 0.00 37.23 4.01
607 937 1.303309 GCATCCATTCGAGGGACAAG 58.697 55.000 9.77 5.28 37.23 3.16
608 938 0.617935 TGCATCCATTCGAGGGACAA 59.382 50.000 9.77 0.00 37.23 3.18
609 939 0.839277 ATGCATCCATTCGAGGGACA 59.161 50.000 9.77 5.70 37.23 4.02
610 940 1.071385 AGATGCATCCATTCGAGGGAC 59.929 52.381 23.06 0.00 37.23 4.46
611 941 1.427809 AGATGCATCCATTCGAGGGA 58.572 50.000 23.06 9.96 39.14 4.20
612 942 2.934364 GCTAGATGCATCCATTCGAGGG 60.934 54.545 23.06 0.00 42.31 4.30
613 943 2.344950 GCTAGATGCATCCATTCGAGG 58.655 52.381 23.06 5.90 42.31 4.63
625 955 3.686726 AGCAACAAGTTAGTGCTAGATGC 59.313 43.478 10.03 0.00 43.25 3.91
630 960 7.165460 TGTATCTAGCAACAAGTTAGTGCTA 57.835 36.000 15.34 15.34 37.08 3.49
631 961 6.037786 TGTATCTAGCAACAAGTTAGTGCT 57.962 37.500 14.82 14.82 39.36 4.40
632 962 6.018669 GGATGTATCTAGCAACAAGTTAGTGC 60.019 42.308 2.43 2.43 33.25 4.40
633 963 7.041721 TGGATGTATCTAGCAACAAGTTAGTG 58.958 38.462 1.73 0.00 33.25 2.74
634 964 7.182817 TGGATGTATCTAGCAACAAGTTAGT 57.817 36.000 1.73 0.00 33.25 2.24
635 965 8.668510 AATGGATGTATCTAGCAACAAGTTAG 57.331 34.615 1.73 0.00 32.79 2.34
636 966 8.892723 CAAATGGATGTATCTAGCAACAAGTTA 58.107 33.333 1.73 0.00 0.00 2.24
637 967 7.611467 TCAAATGGATGTATCTAGCAACAAGTT 59.389 33.333 1.73 0.00 0.00 2.66
638 968 7.112122 TCAAATGGATGTATCTAGCAACAAGT 58.888 34.615 1.73 0.00 0.00 3.16
639 969 7.255035 CCTCAAATGGATGTATCTAGCAACAAG 60.255 40.741 1.73 0.00 0.00 3.16
640 970 6.543465 CCTCAAATGGATGTATCTAGCAACAA 59.457 38.462 1.73 0.00 0.00 2.83
641 971 6.057533 CCTCAAATGGATGTATCTAGCAACA 58.942 40.000 0.24 0.24 0.00 3.33
642 972 5.471456 CCCTCAAATGGATGTATCTAGCAAC 59.529 44.000 0.00 0.00 0.00 4.17
643 973 5.369404 TCCCTCAAATGGATGTATCTAGCAA 59.631 40.000 0.00 0.00 0.00 3.91
644 974 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
645 975 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
646 976 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
647 977 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
648 978 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
649 979 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
650 980 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
651 981 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
652 982 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
653 983 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
654 984 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
655 985 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
656 986 4.202243 TGAAAAAGCTTGTCCCTCAAATGG 60.202 41.667 0.00 0.00 35.48 3.16
657 987 4.947645 TGAAAAAGCTTGTCCCTCAAATG 58.052 39.130 0.00 0.00 35.48 2.32
658 988 4.895297 TCTGAAAAAGCTTGTCCCTCAAAT 59.105 37.500 0.00 0.00 35.48 2.32
659 989 4.097892 GTCTGAAAAAGCTTGTCCCTCAAA 59.902 41.667 0.00 0.00 35.48 2.69
660 990 3.632145 GTCTGAAAAAGCTTGTCCCTCAA 59.368 43.478 0.00 0.00 34.61 3.02
661 991 3.214328 GTCTGAAAAAGCTTGTCCCTCA 58.786 45.455 0.00 0.00 0.00 3.86
662 992 2.224314 CGTCTGAAAAAGCTTGTCCCTC 59.776 50.000 0.00 0.00 0.00 4.30
663 993 2.222027 CGTCTGAAAAAGCTTGTCCCT 58.778 47.619 0.00 0.00 0.00 4.20
664 994 1.266989 CCGTCTGAAAAAGCTTGTCCC 59.733 52.381 0.00 0.00 0.00 4.46
665 995 2.218603 TCCGTCTGAAAAAGCTTGTCC 58.781 47.619 0.00 0.00 0.00 4.02
666 996 2.224314 CCTCCGTCTGAAAAAGCTTGTC 59.776 50.000 0.00 1.07 0.00 3.18
667 997 2.222027 CCTCCGTCTGAAAAAGCTTGT 58.778 47.619 0.00 0.00 0.00 3.16
668 998 1.537202 CCCTCCGTCTGAAAAAGCTTG 59.463 52.381 0.00 0.00 0.00 4.01
669 999 1.420138 TCCCTCCGTCTGAAAAAGCTT 59.580 47.619 0.00 0.00 0.00 3.74
670 1000 1.002544 CTCCCTCCGTCTGAAAAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
671 1001 1.270893 ACTCCCTCCGTCTGAAAAAGC 60.271 52.381 0.00 0.00 0.00 3.51
672 1002 2.841442 ACTCCCTCCGTCTGAAAAAG 57.159 50.000 0.00 0.00 0.00 2.27
673 1003 5.718130 TCTTATACTCCCTCCGTCTGAAAAA 59.282 40.000 0.00 0.00 0.00 1.94
674 1004 5.266788 TCTTATACTCCCTCCGTCTGAAAA 58.733 41.667 0.00 0.00 0.00 2.29
675 1005 4.863548 TCTTATACTCCCTCCGTCTGAAA 58.136 43.478 0.00 0.00 0.00 2.69
676 1006 4.515028 TCTTATACTCCCTCCGTCTGAA 57.485 45.455 0.00 0.00 0.00 3.02
677 1007 4.726035 ATCTTATACTCCCTCCGTCTGA 57.274 45.455 0.00 0.00 0.00 3.27
678 1008 5.591067 GGATATCTTATACTCCCTCCGTCTG 59.409 48.000 2.05 0.00 0.00 3.51
679 1009 5.493250 AGGATATCTTATACTCCCTCCGTCT 59.507 44.000 2.05 0.00 0.00 4.18
680 1010 5.757988 AGGATATCTTATACTCCCTCCGTC 58.242 45.833 2.05 0.00 0.00 4.79
681 1011 5.799978 AGGATATCTTATACTCCCTCCGT 57.200 43.478 2.05 0.00 0.00 4.69
682 1012 6.546772 GGTTAGGATATCTTATACTCCCTCCG 59.453 46.154 2.05 0.00 0.00 4.63
683 1013 7.654452 AGGTTAGGATATCTTATACTCCCTCC 58.346 42.308 2.05 0.00 0.00 4.30
684 1014 9.549984 AAAGGTTAGGATATCTTATACTCCCTC 57.450 37.037 2.05 0.00 0.00 4.30
685 1015 9.915564 AAAAGGTTAGGATATCTTATACTCCCT 57.084 33.333 2.05 0.00 0.00 4.20
699 1029 9.927081 ACATATGATTCAGAAAAAGGTTAGGAT 57.073 29.630 10.38 0.00 0.00 3.24
721 1054 9.705290 ATGAGCGAACAAACATATGTATACATA 57.295 29.630 24.22 24.22 42.38 2.29
729 1062 6.317088 ACTGAAATGAGCGAACAAACATATG 58.683 36.000 0.00 0.00 0.00 1.78
731 1064 5.106712 GGACTGAAATGAGCGAACAAACATA 60.107 40.000 0.00 0.00 0.00 2.29
733 1066 3.003275 GGACTGAAATGAGCGAACAAACA 59.997 43.478 0.00 0.00 0.00 2.83
734 1067 3.555518 GGACTGAAATGAGCGAACAAAC 58.444 45.455 0.00 0.00 0.00 2.93
736 1069 1.798223 CGGACTGAAATGAGCGAACAA 59.202 47.619 0.00 0.00 0.00 2.83
738 1071 1.429463 ACGGACTGAAATGAGCGAAC 58.571 50.000 0.00 0.00 0.00 3.95
741 1074 1.531149 ACAAACGGACTGAAATGAGCG 59.469 47.619 0.00 0.00 0.00 5.03
789 1134 4.219070 TCCTCCCCGTGTTCGTATATATTG 59.781 45.833 0.00 0.00 35.01 1.90
790 1135 4.410099 TCCTCCCCGTGTTCGTATATATT 58.590 43.478 0.00 0.00 35.01 1.28
795 1140 0.822164 CTTCCTCCCCGTGTTCGTAT 59.178 55.000 0.00 0.00 35.01 3.06
798 1143 0.108945 GTACTTCCTCCCCGTGTTCG 60.109 60.000 0.00 0.00 0.00 3.95
803 1148 3.229293 GCTATTAGTACTTCCTCCCCGT 58.771 50.000 0.00 0.00 0.00 5.28
806 1151 4.023021 CGACTGCTATTAGTACTTCCTCCC 60.023 50.000 0.00 0.00 0.00 4.30
856 1202 8.795842 TTTTGGAAAGTAGACAGAACTTAACA 57.204 30.769 0.00 0.00 36.17 2.41
887 1238 2.416547 AGCATAGTGAACGTCAATGCAC 59.583 45.455 18.35 10.39 40.96 4.57
906 1261 6.974622 CACATGGGAATAATTTGAGTGTTAGC 59.025 38.462 0.00 0.00 0.00 3.09
1006 1362 3.323403 ACACTCTTTCTCTTGCTGCTACT 59.677 43.478 0.00 0.00 0.00 2.57
1118 1480 3.708403 TCATGTCATCAGGAAGCAACT 57.292 42.857 0.00 0.00 31.29 3.16
1354 1719 1.664659 CAAAGCATCTCTCGAGCTTGG 59.335 52.381 7.81 1.61 46.95 3.61
1620 1994 3.081710 TCACACCTGATCGTCTCCTTA 57.918 47.619 0.00 0.00 0.00 2.69
2067 7288 0.538057 CACTTCTGGCTTGCCCAAGA 60.538 55.000 20.55 11.16 44.81 3.02
2068 7289 0.538057 TCACTTCTGGCTTGCCCAAG 60.538 55.000 9.35 12.80 44.81 3.61
2078 7299 2.941720 GGCTCAGCTAATTCACTTCTGG 59.058 50.000 0.00 0.00 0.00 3.86
2180 7401 7.269477 ACCTTCTTCTGAAACTTTTCATGAG 57.731 36.000 4.89 6.52 45.26 2.90
2418 7662 4.872664 AGGCACTGCTAAATATCGTCTAC 58.127 43.478 0.00 0.00 37.18 2.59
2419 7663 5.531122 AAGGCACTGCTAAATATCGTCTA 57.469 39.130 0.00 0.00 40.86 2.59
2420 7664 4.408182 AAGGCACTGCTAAATATCGTCT 57.592 40.909 0.00 0.00 40.86 4.18
2438 7682 7.655490 AGTTTTCACTCTCAATCAATCAAAGG 58.345 34.615 0.00 0.00 0.00 3.11
2442 7686 7.521099 GCTGAAGTTTTCACTCTCAATCAATCA 60.521 37.037 0.00 0.00 35.46 2.57
2477 7721 0.823460 CACCACAACAGTGCCCTTTT 59.177 50.000 0.00 0.00 31.87 2.27
2522 7766 9.573166 CCAGGTAAGATCATATCAAATGGTTTA 57.427 33.333 0.00 0.00 0.00 2.01
2631 7875 9.897744 CAATGCAGTTCTCTTTGTAAATCTAAA 57.102 29.630 0.00 0.00 0.00 1.85
2652 7896 8.970691 AGAAATAAAATATGTATCGCCAATGC 57.029 30.769 0.00 0.00 0.00 3.56
2726 7970 8.598916 TCCTTTCGCATAATCAATAAGGGTATA 58.401 33.333 0.00 0.00 33.25 1.47
2745 7989 4.991687 AGACTAACTTTCAGCTTCCTTTCG 59.008 41.667 0.00 0.00 0.00 3.46
2901 8227 8.934697 AGTATTCAGCAAGGGTGTAATATAGAA 58.065 33.333 0.00 0.00 32.43 2.10
2915 8241 8.778358 GGGAAATTATAGTCAGTATTCAGCAAG 58.222 37.037 0.00 0.00 0.00 4.01
2939 8265 9.182214 CTCATGGTCATAAATGATAATTAGGGG 57.818 37.037 0.00 0.00 39.30 4.79
2980 8306 5.234466 ACTGAATACAAAAGAGGCAGTCT 57.766 39.130 0.00 0.00 36.94 3.24
2998 8324 9.006839 CACGTATATATAAGGACCAAGTACTGA 57.993 37.037 9.98 0.00 0.00 3.41
3019 8345 6.695713 GCATAGAACTGATGTGTATTCACGTA 59.304 38.462 0.00 0.00 46.49 3.57
3022 8348 5.050769 CGGCATAGAACTGATGTGTATTCAC 60.051 44.000 0.00 0.00 44.08 3.18
3036 8362 4.923871 CACCTATATCACACGGCATAGAAC 59.076 45.833 0.00 0.00 0.00 3.01
3037 8363 4.021456 CCACCTATATCACACGGCATAGAA 60.021 45.833 0.00 0.00 0.00 2.10
3045 8371 3.703286 TTCGTCCACCTATATCACACG 57.297 47.619 0.00 0.00 0.00 4.49
3180 8511 4.527564 CACTGAAAATGGTGAACGTCTTC 58.472 43.478 0.00 0.00 35.69 2.87
3231 8562 4.623932 TTGAACAGCAGACTAAGACCAT 57.376 40.909 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.