Multiple sequence alignment - TraesCS1B01G409500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G409500 chr1B 100.000 3105 0 0 1 3105 636794974 636798078 0.000000e+00 5734.0
1 TraesCS1B01G409500 chr1D 93.055 1915 69 20 1 1899 462147474 462149340 0.000000e+00 2741.0
2 TraesCS1B01G409500 chr1D 78.903 474 77 14 2646 3105 425522444 425521980 1.810000e-77 300.0
3 TraesCS1B01G409500 chr1D 92.857 168 7 4 2024 2188 462149478 462149643 4.000000e-59 239.0
4 TraesCS1B01G409500 chr1D 88.889 81 8 1 1944 2024 462149348 462149427 7.090000e-17 99.0
5 TraesCS1B01G409500 chr1A 91.554 1930 82 29 1 1897 554017238 554019119 0.000000e+00 2586.0
6 TraesCS1B01G409500 chr1A 91.597 119 7 2 2024 2139 554019247 554019365 8.910000e-36 161.0
7 TraesCS1B01G409500 chr1A 100.000 33 0 0 2156 2188 554019363 554019395 9.300000e-06 62.1
8 TraesCS1B01G409500 chr3B 88.103 975 58 22 815 1770 23360665 23361600 0.000000e+00 1105.0
9 TraesCS1B01G409500 chr3B 84.192 291 29 9 1900 2188 8547604 8547879 1.840000e-67 267.0
10 TraesCS1B01G409500 chr5A 87.590 975 60 29 815 1770 632263654 632262722 0.000000e+00 1074.0
11 TraesCS1B01G409500 chr5A 78.273 359 54 15 2757 3105 298231306 298230962 3.140000e-50 209.0
12 TraesCS1B01G409500 chr7D 80.164 489 63 19 2648 3105 22596867 22597352 4.960000e-88 335.0
13 TraesCS1B01G409500 chr7D 80.106 377 48 14 2745 3105 63713478 63713843 3.970000e-64 255.0
14 TraesCS1B01G409500 chr7D 85.572 201 26 3 2609 2808 612934969 612934771 1.130000e-49 207.0
15 TraesCS1B01G409500 chr4B 79.183 514 78 15 2608 3105 232206567 232207067 2.310000e-86 329.0
16 TraesCS1B01G409500 chr3D 78.049 451 77 14 2658 3093 16644446 16644889 6.600000e-67 265.0
17 TraesCS1B01G409500 chr6A 76.758 512 90 19 2609 3105 606519351 606518854 3.070000e-65 259.0
18 TraesCS1B01G409500 chr6A 80.729 384 24 19 815 1181 2845320 2845670 1.430000e-63 254.0
19 TraesCS1B01G409500 chr6A 85.572 201 27 2 2608 2807 598453465 598453266 3.140000e-50 209.0
20 TraesCS1B01G409500 chr6A 85.222 203 27 3 2608 2809 598379855 598379655 4.060000e-49 206.0
21 TraesCS1B01G409500 chr6A 84.729 203 28 3 2608 2809 598319375 598319175 1.890000e-47 200.0
22 TraesCS1B01G409500 chr2B 79.467 375 57 12 2745 3105 447866603 447866971 6.650000e-62 248.0
23 TraesCS1B01G409500 chr2B 79.467 375 57 12 2745 3105 447906053 447906421 6.650000e-62 248.0
24 TraesCS1B01G409500 chr2B 77.867 375 62 14 2745 3105 26350290 26350657 2.430000e-51 213.0
25 TraesCS1B01G409500 chr2D 85.930 199 21 5 2610 2808 629570648 629570457 4.060000e-49 206.0
26 TraesCS1B01G409500 chr2D 79.545 220 26 10 1904 2120 15335258 15335461 4.180000e-29 139.0
27 TraesCS1B01G409500 chr2D 97.872 47 1 0 2142 2188 15335462 15335508 7.140000e-12 82.4
28 TraesCS1B01G409500 chr5B 84.878 205 26 5 2609 2809 592715375 592715578 5.250000e-48 202.0
29 TraesCS1B01G409500 chr5B 80.851 141 22 5 2461 2601 547419070 547419205 4.230000e-19 106.0
30 TraesCS1B01G409500 chr7B 96.610 59 2 0 815 873 446676980 446676922 7.090000e-17 99.0
31 TraesCS1B01G409500 chr7B 75.138 181 21 10 2280 2437 5979271 5979092 2.590000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G409500 chr1B 636794974 636798078 3104 False 5734.000000 5734 100.000000 1 3105 1 chr1B.!!$F1 3104
1 TraesCS1B01G409500 chr1D 462147474 462149643 2169 False 1026.333333 2741 91.600333 1 2188 3 chr1D.!!$F1 2187
2 TraesCS1B01G409500 chr1A 554017238 554019395 2157 False 936.366667 2586 94.383667 1 2188 3 chr1A.!!$F1 2187
3 TraesCS1B01G409500 chr3B 23360665 23361600 935 False 1105.000000 1105 88.103000 815 1770 1 chr3B.!!$F2 955
4 TraesCS1B01G409500 chr5A 632262722 632263654 932 True 1074.000000 1074 87.590000 815 1770 1 chr5A.!!$R2 955
5 TraesCS1B01G409500 chr4B 232206567 232207067 500 False 329.000000 329 79.183000 2608 3105 1 chr4B.!!$F1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 886 0.542938 TCCTCCACACCCTCACTCAG 60.543 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2497 2596 0.040067 CAGTTTTCAAGAGGCACGGC 60.04 55.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 165 1.305219 GCGCCCAAACATGTCTAGCA 61.305 55.000 0.00 0.00 0.00 3.49
293 295 2.205074 GTGTGACATGATCGATGGGAC 58.795 52.381 0.54 0.00 36.23 4.46
296 298 2.034179 GTGACATGATCGATGGGACGTA 59.966 50.000 0.54 0.00 36.23 3.57
297 299 2.034179 TGACATGATCGATGGGACGTAC 59.966 50.000 0.54 0.00 36.23 3.67
298 300 2.293677 GACATGATCGATGGGACGTACT 59.706 50.000 0.54 0.00 36.23 2.73
308 310 1.003928 TGGGACGTACTGCTCAGTCTA 59.996 52.381 5.72 0.00 42.54 2.59
347 349 2.225491 ACGTGATGATCAAACCAAACCG 59.775 45.455 0.00 0.00 0.00 4.44
422 424 6.681777 AGATGCAGTCAAACAAAGGAAATAC 58.318 36.000 0.00 0.00 0.00 1.89
553 555 1.202580 AGCGATGCCATGGAGTAAGTC 60.203 52.381 18.40 2.30 0.00 3.01
577 579 3.113260 AGCAAACCAGACAGTACTCAC 57.887 47.619 0.00 0.00 0.00 3.51
646 648 5.362717 TGTAGTTTCTGTCTCCTCAACTCAA 59.637 40.000 0.00 0.00 0.00 3.02
647 649 5.559148 AGTTTCTGTCTCCTCAACTCAAT 57.441 39.130 0.00 0.00 0.00 2.57
648 650 5.934781 AGTTTCTGTCTCCTCAACTCAATT 58.065 37.500 0.00 0.00 0.00 2.32
649 651 5.994668 AGTTTCTGTCTCCTCAACTCAATTC 59.005 40.000 0.00 0.00 0.00 2.17
650 652 5.551305 TTCTGTCTCCTCAACTCAATTCA 57.449 39.130 0.00 0.00 0.00 2.57
662 664 2.708325 ACTCAATTCATAGGGGCCTCTC 59.292 50.000 9.55 0.00 0.00 3.20
756 758 2.232239 CGAAACGGAGAGCATTGTTG 57.768 50.000 0.00 0.00 0.00 3.33
873 875 0.988145 TCCATCCATCCTCCACACCC 60.988 60.000 0.00 0.00 0.00 4.61
881 886 0.542938 TCCTCCACACCCTCACTCAG 60.543 60.000 0.00 0.00 0.00 3.35
899 904 5.237996 CACTCAGTCATTCAAACATGTGAGT 59.762 40.000 0.00 0.46 39.41 3.41
900 905 5.237996 ACTCAGTCATTCAAACATGTGAGTG 59.762 40.000 0.00 4.68 38.30 3.51
901 906 4.516321 TCAGTCATTCAAACATGTGAGTGG 59.484 41.667 13.59 0.00 40.62 4.00
902 907 3.254166 AGTCATTCAAACATGTGAGTGGC 59.746 43.478 0.00 2.00 39.43 5.01
927 932 1.202475 TGCGTTGTGCTTGAGACAGTA 60.202 47.619 0.00 0.00 46.63 2.74
945 950 1.672881 GTAGCAAGCTAGCCATTGGTG 59.327 52.381 23.94 10.40 37.66 4.17
1132 1154 2.124653 GAGAGGAGGAGACCGCGA 60.125 66.667 8.23 0.00 35.00 5.87
1574 1596 4.890306 GGAGGAGGGGGAGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
1630 1652 1.129624 CTCGACTCTTCAGGACTGACG 59.870 57.143 0.67 0.20 39.66 4.35
1654 1682 9.823647 ACGTTATAATCCATCATCAATCTATCC 57.176 33.333 0.00 0.00 0.00 2.59
1772 1809 9.049523 TGTTCTAACTATGTAGTAGTATGTCGG 57.950 37.037 0.00 0.00 42.83 4.79
1798 1838 4.202461 TGGAGGAGTGTATTTGTTCAAGCT 60.202 41.667 0.00 0.00 0.00 3.74
1805 1845 5.050091 AGTGTATTTGTTCAAGCTCGTGAAG 60.050 40.000 0.97 0.00 38.17 3.02
1812 1852 5.297547 TGTTCAAGCTCGTGAAGAATTAGT 58.702 37.500 0.97 0.00 38.17 2.24
1853 1896 3.942829 TGGTTGGTTTGCAATGAAAACA 58.057 36.364 17.72 5.64 38.91 2.83
1858 1901 6.037610 GGTTGGTTTGCAATGAAAACATACAA 59.962 34.615 17.72 10.22 38.91 2.41
1899 1942 7.607607 TCAACTATGCATGTGTCTGATTTACTT 59.392 33.333 10.16 0.00 0.00 2.24
1900 1943 7.928307 ACTATGCATGTGTCTGATTTACTTT 57.072 32.000 10.16 0.00 0.00 2.66
1903 1946 6.882610 TGCATGTGTCTGATTTACTTTCTT 57.117 33.333 0.00 0.00 0.00 2.52
1905 1948 6.486320 TGCATGTGTCTGATTTACTTTCTTCA 59.514 34.615 0.00 0.00 0.00 3.02
1906 1949 6.798959 GCATGTGTCTGATTTACTTTCTTCAC 59.201 38.462 0.00 0.00 0.00 3.18
1907 1950 7.520453 GCATGTGTCTGATTTACTTTCTTCACA 60.520 37.037 0.00 0.00 36.72 3.58
1908 1951 7.482654 TGTGTCTGATTTACTTTCTTCACAG 57.517 36.000 0.00 0.00 0.00 3.66
1909 1952 6.483307 TGTGTCTGATTTACTTTCTTCACAGG 59.517 38.462 0.00 0.00 0.00 4.00
1910 1953 5.997746 TGTCTGATTTACTTTCTTCACAGGG 59.002 40.000 0.00 0.00 0.00 4.45
1911 1954 5.003804 TCTGATTTACTTTCTTCACAGGGC 58.996 41.667 0.00 0.00 0.00 5.19
1912 1955 4.079253 TGATTTACTTTCTTCACAGGGCC 58.921 43.478 0.00 0.00 0.00 5.80
1913 1956 2.178912 TTACTTTCTTCACAGGGCCG 57.821 50.000 0.00 0.00 0.00 6.13
1914 1957 1.053424 TACTTTCTTCACAGGGCCGT 58.947 50.000 0.00 0.00 0.00 5.68
1915 1958 1.053424 ACTTTCTTCACAGGGCCGTA 58.947 50.000 0.00 0.00 0.00 4.02
1916 1959 1.270678 ACTTTCTTCACAGGGCCGTAC 60.271 52.381 0.00 0.00 0.00 3.67
1917 1960 0.035739 TTTCTTCACAGGGCCGTACC 59.964 55.000 0.00 0.00 37.93 3.34
1918 1961 0.834687 TTCTTCACAGGGCCGTACCT 60.835 55.000 0.00 0.00 43.08 3.08
1919 1962 0.834687 TCTTCACAGGGCCGTACCTT 60.835 55.000 0.00 0.00 39.34 3.50
1920 1963 0.036306 CTTCACAGGGCCGTACCTTT 59.964 55.000 0.00 0.00 39.34 3.11
1921 1964 1.276989 CTTCACAGGGCCGTACCTTTA 59.723 52.381 0.00 0.00 39.34 1.85
1928 1971 3.377172 CAGGGCCGTACCTTTAAAATCTG 59.623 47.826 0.00 0.00 39.34 2.90
1954 1997 2.032550 CCGGTGCAAAATCAGCTCTATG 59.967 50.000 0.00 0.00 32.68 2.23
2000 2043 0.535797 GTACTCCCTCCTTTCCCACG 59.464 60.000 0.00 0.00 0.00 4.94
2010 2053 4.547532 CTCCTTTCCCACGATATAAGACG 58.452 47.826 0.00 0.00 0.00 4.18
2013 2056 4.743644 CCTTTCCCACGATATAAGACGTTC 59.256 45.833 0.00 0.00 40.76 3.95
2014 2057 5.451520 CCTTTCCCACGATATAAGACGTTCT 60.452 44.000 0.00 0.00 40.76 3.01
2016 2059 4.928601 TCCCACGATATAAGACGTTCTTG 58.071 43.478 9.58 0.00 40.76 3.02
2024 2067 6.198403 CGATATAAGACGTTCTTGCAAGCTAA 59.802 38.462 21.99 9.04 37.29 3.09
2025 2068 3.879932 AAGACGTTCTTGCAAGCTAAC 57.120 42.857 21.99 19.09 34.98 2.34
2027 2070 3.403038 AGACGTTCTTGCAAGCTAACAT 58.597 40.909 21.99 10.34 0.00 2.71
2028 2071 3.433615 AGACGTTCTTGCAAGCTAACATC 59.566 43.478 21.99 18.12 0.00 3.06
2029 2072 3.138304 ACGTTCTTGCAAGCTAACATCA 58.862 40.909 21.99 0.00 0.00 3.07
2030 2073 3.563808 ACGTTCTTGCAAGCTAACATCAA 59.436 39.130 21.99 5.23 0.00 2.57
2031 2074 4.036262 ACGTTCTTGCAAGCTAACATCAAA 59.964 37.500 21.99 4.48 0.00 2.69
2032 2075 4.614284 CGTTCTTGCAAGCTAACATCAAAG 59.386 41.667 21.99 6.68 0.00 2.77
2077 2176 9.696917 AAAAGTATTTACATCTTGCCAAAAGAG 57.303 29.630 0.00 0.00 37.28 2.85
2080 2179 8.515414 AGTATTTACATCTTGCCAAAAGAGAAC 58.485 33.333 0.00 0.00 0.00 3.01
2143 2242 3.381949 CTCGAAACTAATTAGAGCGGGG 58.618 50.000 19.38 10.84 34.61 5.73
2145 2244 2.159000 CGAAACTAATTAGAGCGGGGGT 60.159 50.000 19.38 0.00 0.00 4.95
2146 2245 3.464907 GAAACTAATTAGAGCGGGGGTC 58.535 50.000 19.38 1.30 0.00 4.46
2188 2287 1.610554 GCAGTGCATGGGCCAAATCT 61.611 55.000 11.89 4.06 40.13 2.40
2189 2288 0.174845 CAGTGCATGGGCCAAATCTG 59.825 55.000 11.89 13.14 40.13 2.90
2190 2289 0.040058 AGTGCATGGGCCAAATCTGA 59.960 50.000 11.89 0.00 40.13 3.27
2191 2290 0.896923 GTGCATGGGCCAAATCTGAA 59.103 50.000 11.89 0.00 40.13 3.02
2192 2291 1.275856 GTGCATGGGCCAAATCTGAAA 59.724 47.619 11.89 0.00 40.13 2.69
2193 2292 1.976404 TGCATGGGCCAAATCTGAAAA 59.024 42.857 11.89 0.00 40.13 2.29
2194 2293 2.572556 TGCATGGGCCAAATCTGAAAAT 59.427 40.909 11.89 0.00 40.13 1.82
2195 2294 2.940410 GCATGGGCCAAATCTGAAAATG 59.060 45.455 11.89 0.28 0.00 2.32
2196 2295 3.369681 GCATGGGCCAAATCTGAAAATGA 60.370 43.478 11.89 0.00 0.00 2.57
2197 2296 4.439057 CATGGGCCAAATCTGAAAATGAG 58.561 43.478 11.89 0.00 0.00 2.90
2198 2297 3.777087 TGGGCCAAATCTGAAAATGAGA 58.223 40.909 2.13 0.00 0.00 3.27
2199 2298 3.511146 TGGGCCAAATCTGAAAATGAGAC 59.489 43.478 2.13 0.00 0.00 3.36
2200 2299 3.511146 GGGCCAAATCTGAAAATGAGACA 59.489 43.478 4.39 0.00 0.00 3.41
2201 2300 4.021192 GGGCCAAATCTGAAAATGAGACAA 60.021 41.667 4.39 0.00 0.00 3.18
2202 2301 5.511202 GGGCCAAATCTGAAAATGAGACAAA 60.511 40.000 4.39 0.00 0.00 2.83
2203 2302 6.168389 GGCCAAATCTGAAAATGAGACAAAT 58.832 36.000 0.00 0.00 0.00 2.32
2204 2303 7.322664 GGCCAAATCTGAAAATGAGACAAATA 58.677 34.615 0.00 0.00 0.00 1.40
2205 2304 7.276438 GGCCAAATCTGAAAATGAGACAAATAC 59.724 37.037 0.00 0.00 0.00 1.89
2206 2305 8.031277 GCCAAATCTGAAAATGAGACAAATACT 58.969 33.333 0.00 0.00 0.00 2.12
2207 2306 9.350357 CCAAATCTGAAAATGAGACAAATACTG 57.650 33.333 0.00 0.00 0.00 2.74
2210 2309 9.730705 AATCTGAAAATGAGACAAATACTGAGA 57.269 29.630 0.00 0.00 0.00 3.27
2211 2310 9.730705 ATCTGAAAATGAGACAAATACTGAGAA 57.269 29.630 0.00 0.00 0.00 2.87
2212 2311 9.212641 TCTGAAAATGAGACAAATACTGAGAAG 57.787 33.333 0.00 0.00 0.00 2.85
2213 2312 8.327941 TGAAAATGAGACAAATACTGAGAAGG 57.672 34.615 0.00 0.00 0.00 3.46
2214 2313 7.391554 TGAAAATGAGACAAATACTGAGAAGGG 59.608 37.037 0.00 0.00 0.00 3.95
2215 2314 6.627087 AATGAGACAAATACTGAGAAGGGA 57.373 37.500 0.00 0.00 0.00 4.20
2216 2315 5.407407 TGAGACAAATACTGAGAAGGGAC 57.593 43.478 0.00 0.00 0.00 4.46
2217 2316 4.838423 TGAGACAAATACTGAGAAGGGACA 59.162 41.667 0.00 0.00 0.00 4.02
2218 2317 5.485353 TGAGACAAATACTGAGAAGGGACAT 59.515 40.000 0.00 0.00 0.00 3.06
2219 2318 5.738909 AGACAAATACTGAGAAGGGACATG 58.261 41.667 0.00 0.00 0.00 3.21
2220 2319 5.485353 AGACAAATACTGAGAAGGGACATGA 59.515 40.000 0.00 0.00 0.00 3.07
2221 2320 5.738909 ACAAATACTGAGAAGGGACATGAG 58.261 41.667 0.00 0.00 0.00 2.90
2222 2321 4.414337 AATACTGAGAAGGGACATGAGC 57.586 45.455 0.00 0.00 0.00 4.26
2223 2322 1.949799 ACTGAGAAGGGACATGAGCT 58.050 50.000 0.00 0.00 0.00 4.09
2224 2323 1.830477 ACTGAGAAGGGACATGAGCTC 59.170 52.381 6.82 6.82 0.00 4.09
2225 2324 1.138661 CTGAGAAGGGACATGAGCTCC 59.861 57.143 12.15 0.00 0.00 4.70
2226 2325 1.198713 GAGAAGGGACATGAGCTCCA 58.801 55.000 12.15 0.00 0.00 3.86
2227 2326 1.138661 GAGAAGGGACATGAGCTCCAG 59.861 57.143 12.15 6.09 0.00 3.86
2228 2327 0.463474 GAAGGGACATGAGCTCCAGC 60.463 60.000 12.15 0.00 42.49 4.85
2239 2338 4.521062 CTCCAGCGCTCCTTCGGG 62.521 72.222 7.13 4.54 0.00 5.14
2248 2347 3.435232 TCCTTCGGGAGCCTCCTA 58.565 61.111 11.29 0.00 39.58 2.94
2249 2348 1.701603 TCCTTCGGGAGCCTCCTAA 59.298 57.895 11.29 4.89 39.58 2.69
2250 2349 0.264955 TCCTTCGGGAGCCTCCTAAT 59.735 55.000 11.29 0.00 39.58 1.73
2251 2350 1.502039 TCCTTCGGGAGCCTCCTAATA 59.498 52.381 11.29 0.00 39.58 0.98
2252 2351 2.090943 TCCTTCGGGAGCCTCCTAATAA 60.091 50.000 11.29 0.00 39.58 1.40
2253 2352 2.037381 CCTTCGGGAGCCTCCTAATAAC 59.963 54.545 11.29 0.00 36.57 1.89
2254 2353 1.713297 TCGGGAGCCTCCTAATAACC 58.287 55.000 11.29 0.00 36.57 2.85
2255 2354 1.062734 TCGGGAGCCTCCTAATAACCA 60.063 52.381 11.29 0.00 36.57 3.67
2256 2355 1.070289 CGGGAGCCTCCTAATAACCAC 59.930 57.143 11.29 0.00 36.57 4.16
2257 2356 2.124411 GGGAGCCTCCTAATAACCACA 58.876 52.381 11.29 0.00 36.57 4.17
2258 2357 2.711547 GGGAGCCTCCTAATAACCACAT 59.288 50.000 11.29 0.00 36.57 3.21
2259 2358 3.908103 GGGAGCCTCCTAATAACCACATA 59.092 47.826 11.29 0.00 36.57 2.29
2260 2359 4.349930 GGGAGCCTCCTAATAACCACATAA 59.650 45.833 11.29 0.00 36.57 1.90
2261 2360 5.513267 GGGAGCCTCCTAATAACCACATAAG 60.513 48.000 11.29 0.00 36.57 1.73
2262 2361 5.071923 GGAGCCTCCTAATAACCACATAAGT 59.928 44.000 2.64 0.00 32.53 2.24
2263 2362 6.409349 GGAGCCTCCTAATAACCACATAAGTT 60.409 42.308 2.64 0.00 32.53 2.66
2264 2363 6.357367 AGCCTCCTAATAACCACATAAGTTG 58.643 40.000 0.00 0.00 0.00 3.16
2265 2364 5.531287 GCCTCCTAATAACCACATAAGTTGG 59.469 44.000 0.00 0.00 0.00 3.77
2266 2365 6.062095 CCTCCTAATAACCACATAAGTTGGG 58.938 44.000 0.00 0.00 0.00 4.12
2267 2366 5.442391 TCCTAATAACCACATAAGTTGGGC 58.558 41.667 0.00 0.00 0.00 5.36
2268 2367 5.192923 TCCTAATAACCACATAAGTTGGGCT 59.807 40.000 0.00 0.00 0.00 5.19
2269 2368 5.299279 CCTAATAACCACATAAGTTGGGCTG 59.701 44.000 0.00 0.00 0.00 4.85
2270 2369 2.969821 AACCACATAAGTTGGGCTGA 57.030 45.000 0.00 0.00 0.00 4.26
2271 2370 2.496899 ACCACATAAGTTGGGCTGAG 57.503 50.000 0.00 0.00 0.00 3.35
2272 2371 1.985159 ACCACATAAGTTGGGCTGAGA 59.015 47.619 0.00 0.00 0.00 3.27
2273 2372 2.026822 ACCACATAAGTTGGGCTGAGAG 60.027 50.000 0.00 0.00 0.00 3.20
2274 2373 2.012673 CACATAAGTTGGGCTGAGAGC 58.987 52.381 0.00 0.00 41.46 4.09
2275 2374 1.293924 CATAAGTTGGGCTGAGAGCG 58.706 55.000 0.00 0.00 43.62 5.03
2282 2381 4.385405 GGCTGAGAGCGCACCACT 62.385 66.667 11.47 2.77 43.62 4.00
2283 2382 2.358003 GCTGAGAGCGCACCACTT 60.358 61.111 11.47 0.00 0.00 3.16
2284 2383 2.675056 GCTGAGAGCGCACCACTTG 61.675 63.158 11.47 2.44 0.00 3.16
2285 2384 1.005748 CTGAGAGCGCACCACTTGA 60.006 57.895 11.47 0.00 0.00 3.02
2286 2385 1.287730 CTGAGAGCGCACCACTTGAC 61.288 60.000 11.47 0.00 0.00 3.18
2287 2386 2.356313 AGAGCGCACCACTTGACG 60.356 61.111 11.47 0.00 0.00 4.35
2288 2387 4.077188 GAGCGCACCACTTGACGC 62.077 66.667 11.47 0.00 45.40 5.19
2292 2391 2.778679 GCACCACTTGACGCGATC 59.221 61.111 15.93 7.50 0.00 3.69
2293 2392 1.738099 GCACCACTTGACGCGATCT 60.738 57.895 15.93 0.00 0.00 2.75
2294 2393 1.687494 GCACCACTTGACGCGATCTC 61.687 60.000 15.93 0.00 0.00 2.75
2295 2394 0.388520 CACCACTTGACGCGATCTCA 60.389 55.000 15.93 2.63 0.00 3.27
2296 2395 0.109086 ACCACTTGACGCGATCTCAG 60.109 55.000 15.93 9.57 0.00 3.35
2297 2396 1.416813 CCACTTGACGCGATCTCAGC 61.417 60.000 15.93 0.00 0.00 4.26
2298 2397 1.153745 ACTTGACGCGATCTCAGCC 60.154 57.895 15.93 0.00 0.00 4.85
2299 2398 1.153765 CTTGACGCGATCTCAGCCA 60.154 57.895 15.93 0.00 0.00 4.75
2300 2399 1.416813 CTTGACGCGATCTCAGCCAC 61.417 60.000 15.93 0.00 0.00 5.01
2301 2400 2.583593 GACGCGATCTCAGCCACC 60.584 66.667 15.93 0.00 0.00 4.61
2302 2401 4.498520 ACGCGATCTCAGCCACCG 62.499 66.667 15.93 0.00 0.00 4.94
2305 2404 4.147449 CGATCTCAGCCACCGCCA 62.147 66.667 0.00 0.00 34.57 5.69
2306 2405 2.512515 GATCTCAGCCACCGCCAC 60.513 66.667 0.00 0.00 34.57 5.01
2307 2406 4.457496 ATCTCAGCCACCGCCACG 62.457 66.667 0.00 0.00 34.57 4.94
2320 2419 4.368808 CCACGTGTCGCGCTTTGG 62.369 66.667 15.65 2.50 46.11 3.28
2321 2420 3.636043 CACGTGTCGCGCTTTGGT 61.636 61.111 7.58 0.00 46.11 3.67
2322 2421 2.893404 ACGTGTCGCGCTTTGGTT 60.893 55.556 5.56 0.00 46.11 3.67
2323 2422 2.425124 CGTGTCGCGCTTTGGTTG 60.425 61.111 5.56 0.00 0.00 3.77
2324 2423 2.713154 GTGTCGCGCTTTGGTTGT 59.287 55.556 5.56 0.00 0.00 3.32
2325 2424 1.063488 GTGTCGCGCTTTGGTTGTT 59.937 52.632 5.56 0.00 0.00 2.83
2326 2425 0.928451 GTGTCGCGCTTTGGTTGTTC 60.928 55.000 5.56 0.00 0.00 3.18
2327 2426 1.370051 GTCGCGCTTTGGTTGTTCC 60.370 57.895 5.56 0.00 0.00 3.62
2328 2427 2.050442 CGCGCTTTGGTTGTTCCC 60.050 61.111 5.56 0.00 34.77 3.97
2329 2428 2.551912 CGCGCTTTGGTTGTTCCCT 61.552 57.895 5.56 0.00 34.77 4.20
2330 2429 1.285950 GCGCTTTGGTTGTTCCCTC 59.714 57.895 0.00 0.00 34.77 4.30
2331 2430 1.172812 GCGCTTTGGTTGTTCCCTCT 61.173 55.000 0.00 0.00 34.77 3.69
2332 2431 0.593128 CGCTTTGGTTGTTCCCTCTG 59.407 55.000 0.00 0.00 34.77 3.35
2333 2432 0.961753 GCTTTGGTTGTTCCCTCTGG 59.038 55.000 0.00 0.00 34.77 3.86
2334 2433 1.620822 CTTTGGTTGTTCCCTCTGGG 58.379 55.000 0.00 0.00 46.11 4.45
2335 2434 0.930726 TTTGGTTGTTCCCTCTGGGT 59.069 50.000 2.25 0.00 44.74 4.51
2336 2435 0.930726 TTGGTTGTTCCCTCTGGGTT 59.069 50.000 2.25 0.00 44.74 4.11
2337 2436 0.930726 TGGTTGTTCCCTCTGGGTTT 59.069 50.000 2.25 0.00 44.74 3.27
2338 2437 1.289530 TGGTTGTTCCCTCTGGGTTTT 59.710 47.619 2.25 0.00 44.74 2.43
2339 2438 2.292587 TGGTTGTTCCCTCTGGGTTTTT 60.293 45.455 2.25 0.00 44.74 1.94
2340 2439 2.364324 GGTTGTTCCCTCTGGGTTTTTC 59.636 50.000 2.25 0.00 44.74 2.29
2341 2440 2.364324 GTTGTTCCCTCTGGGTTTTTCC 59.636 50.000 2.25 0.00 44.74 3.13
2342 2441 1.244816 GTTCCCTCTGGGTTTTTCCG 58.755 55.000 2.25 0.00 44.74 4.30
2343 2442 0.538746 TTCCCTCTGGGTTTTTCCGC 60.539 55.000 2.25 0.00 44.74 5.54
2344 2443 1.228429 CCCTCTGGGTTTTTCCGCA 60.228 57.895 0.00 0.00 38.25 5.69
2345 2444 1.524008 CCCTCTGGGTTTTTCCGCAC 61.524 60.000 0.00 0.00 38.25 5.34
2346 2445 1.574428 CTCTGGGTTTTTCCGCACG 59.426 57.895 0.00 0.00 37.00 5.34
2347 2446 0.882927 CTCTGGGTTTTTCCGCACGA 60.883 55.000 0.00 0.00 37.00 4.35
2348 2447 0.882927 TCTGGGTTTTTCCGCACGAG 60.883 55.000 0.00 0.00 37.00 4.18
2349 2448 1.153127 TGGGTTTTTCCGCACGAGT 60.153 52.632 0.00 0.00 37.00 4.18
2350 2449 0.748729 TGGGTTTTTCCGCACGAGTT 60.749 50.000 0.00 0.00 37.00 3.01
2351 2450 0.382873 GGGTTTTTCCGCACGAGTTT 59.617 50.000 0.00 0.00 37.00 2.66
2352 2451 1.202325 GGGTTTTTCCGCACGAGTTTT 60.202 47.619 0.00 0.00 37.00 2.43
2353 2452 2.114056 GGTTTTTCCGCACGAGTTTTC 58.886 47.619 0.00 0.00 0.00 2.29
2367 2466 4.403453 CGAGTTTTCGGCTTTTTAGATGG 58.597 43.478 0.00 0.00 43.05 3.51
2368 2467 4.083484 CGAGTTTTCGGCTTTTTAGATGGT 60.083 41.667 0.00 0.00 43.05 3.55
2369 2468 5.562113 CGAGTTTTCGGCTTTTTAGATGGTT 60.562 40.000 0.00 0.00 43.05 3.67
2370 2469 5.769367 AGTTTTCGGCTTTTTAGATGGTTC 58.231 37.500 0.00 0.00 0.00 3.62
2371 2470 5.535030 AGTTTTCGGCTTTTTAGATGGTTCT 59.465 36.000 0.00 0.00 35.90 3.01
2372 2471 6.040504 AGTTTTCGGCTTTTTAGATGGTTCTT 59.959 34.615 0.00 0.00 33.17 2.52
2373 2472 6.399639 TTTCGGCTTTTTAGATGGTTCTTT 57.600 33.333 0.00 0.00 33.17 2.52
2374 2473 5.371115 TCGGCTTTTTAGATGGTTCTTTG 57.629 39.130 0.00 0.00 33.17 2.77
2375 2474 4.825085 TCGGCTTTTTAGATGGTTCTTTGT 59.175 37.500 0.00 0.00 33.17 2.83
2376 2475 5.300792 TCGGCTTTTTAGATGGTTCTTTGTT 59.699 36.000 0.00 0.00 33.17 2.83
2377 2476 5.983118 CGGCTTTTTAGATGGTTCTTTGTTT 59.017 36.000 0.00 0.00 33.17 2.83
2378 2477 6.478673 CGGCTTTTTAGATGGTTCTTTGTTTT 59.521 34.615 0.00 0.00 33.17 2.43
2379 2478 7.011016 CGGCTTTTTAGATGGTTCTTTGTTTTT 59.989 33.333 0.00 0.00 33.17 1.94
2401 2500 6.937886 TTTTCGGTTTTTCAACAGTCTTTC 57.062 33.333 0.00 0.00 34.15 2.62
2402 2501 5.890424 TTCGGTTTTTCAACAGTCTTTCT 57.110 34.783 0.00 0.00 34.15 2.52
2403 2502 5.890424 TCGGTTTTTCAACAGTCTTTCTT 57.110 34.783 0.00 0.00 34.15 2.52
2404 2503 6.988622 TCGGTTTTTCAACAGTCTTTCTTA 57.011 33.333 0.00 0.00 34.15 2.10
2405 2504 7.011828 TCGGTTTTTCAACAGTCTTTCTTAG 57.988 36.000 0.00 0.00 34.15 2.18
2406 2505 5.681543 CGGTTTTTCAACAGTCTTTCTTAGC 59.318 40.000 0.00 0.00 34.15 3.09
2407 2506 6.458342 CGGTTTTTCAACAGTCTTTCTTAGCT 60.458 38.462 0.00 0.00 34.15 3.32
2408 2507 7.258441 GGTTTTTCAACAGTCTTTCTTAGCTT 58.742 34.615 0.00 0.00 34.15 3.74
2409 2508 7.759886 GGTTTTTCAACAGTCTTTCTTAGCTTT 59.240 33.333 0.00 0.00 34.15 3.51
2410 2509 9.140286 GTTTTTCAACAGTCTTTCTTAGCTTTT 57.860 29.630 0.00 0.00 32.54 2.27
2411 2510 9.705290 TTTTTCAACAGTCTTTCTTAGCTTTTT 57.295 25.926 0.00 0.00 0.00 1.94
2412 2511 8.687824 TTTCAACAGTCTTTCTTAGCTTTTTG 57.312 30.769 0.00 0.00 0.00 2.44
2413 2512 7.624360 TCAACAGTCTTTCTTAGCTTTTTGA 57.376 32.000 0.00 0.00 0.00 2.69
2414 2513 7.472543 TCAACAGTCTTTCTTAGCTTTTTGAC 58.527 34.615 0.00 0.00 0.00 3.18
2415 2514 7.120579 TCAACAGTCTTTCTTAGCTTTTTGACA 59.879 33.333 0.00 0.00 0.00 3.58
2416 2515 7.391148 ACAGTCTTTCTTAGCTTTTTGACAA 57.609 32.000 0.00 0.00 0.00 3.18
2417 2516 7.826690 ACAGTCTTTCTTAGCTTTTTGACAAA 58.173 30.769 0.00 0.00 0.00 2.83
2418 2517 7.755373 ACAGTCTTTCTTAGCTTTTTGACAAAC 59.245 33.333 0.00 0.00 0.00 2.93
2419 2518 7.754924 CAGTCTTTCTTAGCTTTTTGACAAACA 59.245 33.333 0.00 0.00 0.00 2.83
2420 2519 8.303876 AGTCTTTCTTAGCTTTTTGACAAACAA 58.696 29.630 0.00 0.00 36.65 2.83
2421 2520 8.921670 GTCTTTCTTAGCTTTTTGACAAACAAA 58.078 29.630 0.00 0.00 45.22 2.83
2437 2536 9.443283 TGACAAACAAAAATTCAAAAACAGTTG 57.557 25.926 0.00 0.00 0.00 3.16
2438 2537 8.279695 ACAAACAAAAATTCAAAAACAGTTGC 57.720 26.923 0.00 0.00 0.00 4.17
2439 2538 7.112705 ACAAACAAAAATTCAAAAACAGTTGCG 59.887 29.630 0.00 0.00 0.00 4.85
2440 2539 5.085390 ACAAAAATTCAAAAACAGTTGCGC 58.915 33.333 0.00 0.00 0.00 6.09
2441 2540 4.935885 AAAATTCAAAAACAGTTGCGCA 57.064 31.818 5.66 5.66 0.00 6.09
2442 2541 4.935885 AAATTCAAAAACAGTTGCGCAA 57.064 31.818 21.02 21.02 0.00 4.85
2443 2542 4.935885 AATTCAAAAACAGTTGCGCAAA 57.064 31.818 26.87 5.20 0.00 3.68
2444 2543 4.935885 ATTCAAAAACAGTTGCGCAAAA 57.064 31.818 26.87 12.55 0.00 2.44
2445 2544 4.732285 TTCAAAAACAGTTGCGCAAAAA 57.268 31.818 26.87 0.00 0.00 1.94
2467 2566 6.418057 AAAATGTGTTATTTCCCTGCAAGA 57.582 33.333 0.00 0.00 34.07 3.02
2468 2567 5.649782 AATGTGTTATTTCCCTGCAAGAG 57.350 39.130 0.00 0.00 34.07 2.85
2469 2568 3.420893 TGTGTTATTTCCCTGCAAGAGG 58.579 45.455 0.00 0.00 42.38 3.69
2470 2569 2.164422 GTGTTATTTCCCTGCAAGAGGC 59.836 50.000 0.00 0.00 41.19 4.70
2480 2579 2.606275 GCAAGAGGCACGGTATAGC 58.394 57.895 0.00 0.00 43.97 2.97
2481 2580 0.105039 GCAAGAGGCACGGTATAGCT 59.895 55.000 0.00 0.00 43.97 3.32
2482 2581 1.473434 GCAAGAGGCACGGTATAGCTT 60.473 52.381 0.00 0.00 43.97 3.74
2483 2582 2.474816 CAAGAGGCACGGTATAGCTTC 58.525 52.381 0.00 0.00 37.15 3.86
2484 2583 1.776662 AGAGGCACGGTATAGCTTCA 58.223 50.000 0.00 0.00 39.09 3.02
2485 2584 1.683917 AGAGGCACGGTATAGCTTCAG 59.316 52.381 0.00 0.00 39.09 3.02
2486 2585 0.105039 AGGCACGGTATAGCTTCAGC 59.895 55.000 0.00 0.00 42.49 4.26
2513 2612 3.758172 GGCCGTGCCTCTTGAAAA 58.242 55.556 7.58 0.00 46.69 2.29
2514 2613 1.285950 GGCCGTGCCTCTTGAAAAC 59.714 57.895 7.58 0.00 46.69 2.43
2515 2614 1.172812 GGCCGTGCCTCTTGAAAACT 61.173 55.000 7.58 0.00 46.69 2.66
2516 2615 0.040067 GCCGTGCCTCTTGAAAACTG 60.040 55.000 0.00 0.00 0.00 3.16
2517 2616 1.593196 CCGTGCCTCTTGAAAACTGA 58.407 50.000 0.00 0.00 0.00 3.41
2518 2617 1.946768 CCGTGCCTCTTGAAAACTGAA 59.053 47.619 0.00 0.00 0.00 3.02
2519 2618 2.357637 CCGTGCCTCTTGAAAACTGAAA 59.642 45.455 0.00 0.00 0.00 2.69
2520 2619 3.181491 CCGTGCCTCTTGAAAACTGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
2521 2620 4.420168 CGTGCCTCTTGAAAACTGAAAAA 58.580 39.130 0.00 0.00 0.00 1.94
2567 2666 6.484364 TTTTTCTTCCTTGAGAGGCAAATT 57.516 33.333 0.00 0.00 43.21 1.82
2568 2667 6.484364 TTTTCTTCCTTGAGAGGCAAATTT 57.516 33.333 0.00 0.00 43.21 1.82
2569 2668 6.484364 TTTCTTCCTTGAGAGGCAAATTTT 57.516 33.333 0.00 0.00 43.21 1.82
2570 2669 6.484364 TTCTTCCTTGAGAGGCAAATTTTT 57.516 33.333 0.00 0.00 43.21 1.94
2589 2688 2.811317 GCTTCCACGAGAGGCACG 60.811 66.667 8.88 0.00 46.54 5.34
2590 2689 2.125912 CTTCCACGAGAGGCACGG 60.126 66.667 0.00 0.00 34.93 4.94
2591 2690 4.373116 TTCCACGAGAGGCACGGC 62.373 66.667 0.00 0.00 34.93 5.68
2593 2692 4.803426 CCACGAGAGGCACGGCTC 62.803 72.222 12.42 12.42 34.93 4.70
2594 2693 3.753434 CACGAGAGGCACGGCTCT 61.753 66.667 21.79 21.79 33.65 4.09
2595 2694 3.753434 ACGAGAGGCACGGCTCTG 61.753 66.667 25.94 19.05 33.65 3.35
2597 2696 3.768922 GAGAGGCACGGCTCTGCT 61.769 66.667 25.94 4.23 37.33 4.24
2598 2697 3.308014 GAGAGGCACGGCTCTGCTT 62.308 63.158 25.94 3.85 37.33 3.91
2599 2698 2.359230 GAGGCACGGCTCTGCTTT 60.359 61.111 13.00 0.00 37.33 3.51
2600 2699 2.359230 AGGCACGGCTCTGCTTTC 60.359 61.111 6.18 0.00 37.33 2.62
2601 2700 2.669569 GGCACGGCTCTGCTTTCA 60.670 61.111 6.18 0.00 37.33 2.69
2602 2701 2.558313 GCACGGCTCTGCTTTCAC 59.442 61.111 0.00 0.00 34.06 3.18
2603 2702 2.253758 GCACGGCTCTGCTTTCACA 61.254 57.895 0.00 0.00 34.06 3.58
2604 2703 1.785041 GCACGGCTCTGCTTTCACAA 61.785 55.000 0.00 0.00 34.06 3.33
2605 2704 0.236711 CACGGCTCTGCTTTCACAAG 59.763 55.000 0.00 0.00 0.00 3.16
2606 2705 0.106708 ACGGCTCTGCTTTCACAAGA 59.893 50.000 0.00 0.00 30.57 3.02
2643 2742 3.817647 GTGAGAGTCATGGTTTTGCTTCT 59.182 43.478 0.00 0.00 0.00 2.85
2645 2744 3.817647 GAGAGTCATGGTTTTGCTTCTGT 59.182 43.478 0.00 0.00 0.00 3.41
2652 2751 2.092429 TGGTTTTGCTTCTGTGAGAGGT 60.092 45.455 0.00 0.00 0.00 3.85
2654 2753 3.498777 GGTTTTGCTTCTGTGAGAGGTAC 59.501 47.826 0.00 0.00 0.00 3.34
2659 2758 2.288886 GCTTCTGTGAGAGGTACGGTTT 60.289 50.000 0.00 0.00 0.00 3.27
2665 2764 2.479275 GTGAGAGGTACGGTTTTGCTTC 59.521 50.000 0.00 0.00 0.00 3.86
2667 2766 1.418637 AGAGGTACGGTTTTGCTTCCA 59.581 47.619 0.00 0.00 0.00 3.53
2679 2778 1.219124 GCTTCCACGAGAGGCATGA 59.781 57.895 0.00 0.00 46.54 3.07
2680 2779 1.086634 GCTTCCACGAGAGGCATGAC 61.087 60.000 0.00 0.00 46.54 3.06
2681 2780 0.534412 CTTCCACGAGAGGCATGACT 59.466 55.000 0.00 0.00 0.00 3.41
2730 2830 9.884465 ACATGTTTTCTATTTTTCTTCTCTTCG 57.116 29.630 0.00 0.00 0.00 3.79
2732 2832 8.446599 TGTTTTCTATTTTTCTTCTCTTCGGT 57.553 30.769 0.00 0.00 0.00 4.69
2736 2836 7.228314 TCTATTTTTCTTCTCTTCGGTGAGA 57.772 36.000 4.58 4.58 40.87 3.27
2772 2872 3.093278 CGAGAGGCACGGATTTGC 58.907 61.111 0.00 0.00 42.18 3.68
2777 2877 0.179189 GAGGCACGGATTTGCTTTCG 60.179 55.000 0.00 0.00 42.56 3.46
2779 2879 1.081509 GCACGGATTTGCTTTCGCA 60.082 52.632 0.00 0.00 46.24 5.10
2802 2902 4.554363 CGCGGTAGTGCCTCTCGG 62.554 72.222 0.00 0.00 34.25 4.63
2803 2903 4.208686 GCGGTAGTGCCTCTCGGG 62.209 72.222 0.00 0.00 38.36 5.14
2804 2904 2.439701 CGGTAGTGCCTCTCGGGA 60.440 66.667 0.00 0.00 37.23 5.14
2805 2905 2.050350 CGGTAGTGCCTCTCGGGAA 61.050 63.158 0.00 0.00 37.23 3.97
2806 2906 1.516423 GGTAGTGCCTCTCGGGAAC 59.484 63.158 0.00 0.00 44.20 3.62
2822 2922 0.313987 GAACGGCTTGTGAAAAGGGG 59.686 55.000 0.00 0.00 0.00 4.79
2827 2927 2.037121 CGGCTTGTGAAAAGGGGAAAAT 59.963 45.455 0.00 0.00 0.00 1.82
2904 3008 6.761242 TCAAAACGTATCAACATGGGATCTAG 59.239 38.462 5.52 2.70 0.00 2.43
2914 3018 6.655003 TCAACATGGGATCTAGTTTTGAAGAC 59.345 38.462 0.00 0.00 0.00 3.01
2919 3023 4.159879 GGGATCTAGTTTTGAAGACCTCGA 59.840 45.833 0.00 0.00 0.00 4.04
2921 3025 5.336531 GGATCTAGTTTTGAAGACCTCGACA 60.337 44.000 0.00 0.00 0.00 4.35
2922 3026 5.723672 TCTAGTTTTGAAGACCTCGACAT 57.276 39.130 0.00 0.00 0.00 3.06
2925 3032 4.310769 AGTTTTGAAGACCTCGACATGAG 58.689 43.478 0.00 0.00 44.83 2.90
2941 3048 2.702592 TGAGTCCAACGGTGAAAACT 57.297 45.000 0.00 1.83 0.00 2.66
2944 3055 3.139077 GAGTCCAACGGTGAAAACTGAT 58.861 45.455 0.00 0.00 0.00 2.90
2949 3060 6.072673 AGTCCAACGGTGAAAACTGATATTTC 60.073 38.462 0.00 0.00 37.31 2.17
2957 3068 5.449113 GTGAAAACTGATATTTCGATGCACG 59.551 40.000 0.00 0.00 39.17 5.34
2977 3091 7.421599 TGCACGATTTAAGAGAAACATTTTGA 58.578 30.769 0.00 0.00 0.00 2.69
2978 3092 8.081633 TGCACGATTTAAGAGAAACATTTTGAT 58.918 29.630 0.00 0.00 0.00 2.57
3058 3173 1.206132 ACGACACTTGTCACAACCTGA 59.794 47.619 9.94 0.00 44.99 3.86
3073 3189 0.563173 CCTGAGGAGGGGGAGTGATA 59.437 60.000 0.00 0.00 35.40 2.15
3081 3197 3.181439 GGAGGGGGAGTGATATTTGGAAG 60.181 52.174 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
293 295 5.994887 ACTCTTATAGACTGAGCAGTACG 57.005 43.478 2.65 0.00 42.66 3.67
296 298 7.558081 TGTCATAACTCTTATAGACTGAGCAGT 59.442 37.037 2.20 2.20 45.84 4.40
297 299 7.860373 GTGTCATAACTCTTATAGACTGAGCAG 59.140 40.741 0.00 0.00 31.20 4.24
298 300 7.558081 AGTGTCATAACTCTTATAGACTGAGCA 59.442 37.037 0.00 0.00 31.20 4.26
347 349 5.908341 TCAACCAAAGAAATGTTACCAACC 58.092 37.500 0.00 0.00 0.00 3.77
412 414 3.578282 CCTTTGCCCACTGTATTTCCTTT 59.422 43.478 0.00 0.00 0.00 3.11
536 538 3.827008 TCTGACTTACTCCATGGCATC 57.173 47.619 6.96 0.00 0.00 3.91
539 541 2.284190 GCTTCTGACTTACTCCATGGC 58.716 52.381 6.96 0.00 0.00 4.40
553 555 3.733337 AGTACTGTCTGGTTTGCTTCTG 58.267 45.455 0.00 0.00 0.00 3.02
577 579 5.984323 TCGTGTCACTGTAGTATCTAGCTAG 59.016 44.000 15.01 15.01 0.00 3.42
630 632 6.047870 CCTATGAATTGAGTTGAGGAGACAG 58.952 44.000 0.00 0.00 0.00 3.51
646 648 1.739750 CCAGAGAGGCCCCTATGAAT 58.260 55.000 10.95 0.00 0.00 2.57
647 649 0.400525 CCCAGAGAGGCCCCTATGAA 60.401 60.000 10.95 0.00 35.39 2.57
648 650 1.237163 CCCAGAGAGGCCCCTATGA 59.763 63.158 10.95 0.00 35.39 2.15
649 651 1.074167 ACCCAGAGAGGCCCCTATG 60.074 63.158 1.13 1.13 35.39 2.23
650 652 1.074167 CACCCAGAGAGGCCCCTAT 60.074 63.158 0.00 0.00 35.39 2.57
662 664 2.475466 GGACATCATGCGCACCCAG 61.475 63.158 14.90 6.17 0.00 4.45
756 758 1.068250 GCAGGCGAGATACCCTCAC 59.932 63.158 0.00 0.00 42.06 3.51
873 875 5.467735 TCACATGTTTGAATGACTGAGTGAG 59.532 40.000 0.00 0.00 0.00 3.51
881 886 3.254166 AGCCACTCACATGTTTGAATGAC 59.746 43.478 0.00 0.00 0.00 3.06
899 904 3.886694 GCACAACGCACACAGCCA 61.887 61.111 0.00 0.00 41.38 4.75
900 905 3.124798 AAGCACAACGCACACAGCC 62.125 57.895 0.00 0.00 46.13 4.85
901 906 1.940758 CAAGCACAACGCACACAGC 60.941 57.895 0.00 0.00 46.13 4.40
902 907 0.316442 CTCAAGCACAACGCACACAG 60.316 55.000 0.00 0.00 46.13 3.66
927 932 1.318158 GCACCAATGGCTAGCTTGCT 61.318 55.000 19.45 0.00 0.00 3.91
945 950 2.040544 CCTCGGACCCAACACATGC 61.041 63.158 0.00 0.00 0.00 4.06
1132 1154 3.239253 GGTGGTGGTCGAGGTGGT 61.239 66.667 0.00 0.00 0.00 4.16
1235 1257 0.791983 CGCACGTGTACGAAGACGAT 60.792 55.000 18.38 0.00 44.66 3.73
1376 1398 4.025858 TGGACAGCAGCAGGAGCC 62.026 66.667 0.00 0.00 43.56 4.70
1612 1634 0.875728 ACGTCAGTCCTGAAGAGTCG 59.124 55.000 15.57 9.33 41.85 4.18
1654 1682 7.094291 TGCAGACATGTCAGAGATAGATAGATG 60.094 40.741 27.02 12.21 0.00 2.90
1772 1809 6.385649 TTGAACAAATACACTCCTCCAAAC 57.614 37.500 0.00 0.00 0.00 2.93
1812 1852 7.708752 CCAACCAATCAAGCTACAAGTTAAAAA 59.291 33.333 0.00 0.00 0.00 1.94
1858 1901 3.018423 AGTTGAACAAGCTCCAAAGGT 57.982 42.857 0.00 0.00 33.74 3.50
1899 1942 0.834687 AGGTACGGCCCTGTGAAGAA 60.835 55.000 0.00 0.00 38.26 2.52
1900 1943 0.834687 AAGGTACGGCCCTGTGAAGA 60.835 55.000 0.00 0.00 38.26 2.87
1903 1946 1.350071 TTAAAGGTACGGCCCTGTGA 58.650 50.000 0.00 0.00 38.26 3.58
1905 1948 2.955342 TTTTAAAGGTACGGCCCTGT 57.045 45.000 0.00 0.00 38.26 4.00
1906 1949 3.377172 CAGATTTTAAAGGTACGGCCCTG 59.623 47.826 0.00 0.00 38.26 4.45
1907 1950 3.617284 CAGATTTTAAAGGTACGGCCCT 58.383 45.455 0.00 0.00 38.26 5.19
1908 1951 2.686405 CCAGATTTTAAAGGTACGGCCC 59.314 50.000 0.00 0.00 38.26 5.80
1909 1952 2.686405 CCCAGATTTTAAAGGTACGGCC 59.314 50.000 0.00 0.00 37.58 6.13
1910 1953 2.686405 CCCCAGATTTTAAAGGTACGGC 59.314 50.000 0.00 0.00 0.00 5.68
1911 1954 2.686405 GCCCCAGATTTTAAAGGTACGG 59.314 50.000 0.00 0.00 0.00 4.02
1912 1955 2.686405 GGCCCCAGATTTTAAAGGTACG 59.314 50.000 0.00 0.00 0.00 3.67
1913 1956 3.028850 GGGCCCCAGATTTTAAAGGTAC 58.971 50.000 12.23 0.00 0.00 3.34
1914 1957 2.357361 CGGGCCCCAGATTTTAAAGGTA 60.357 50.000 18.66 0.00 0.00 3.08
1915 1958 1.618616 CGGGCCCCAGATTTTAAAGGT 60.619 52.381 18.66 0.00 0.00 3.50
1916 1959 1.111277 CGGGCCCCAGATTTTAAAGG 58.889 55.000 18.66 0.00 0.00 3.11
1917 1960 1.111277 CCGGGCCCCAGATTTTAAAG 58.889 55.000 18.66 0.00 0.00 1.85
1918 1961 0.410270 ACCGGGCCCCAGATTTTAAA 59.590 50.000 18.66 0.00 0.00 1.52
1919 1962 0.323908 CACCGGGCCCCAGATTTTAA 60.324 55.000 18.66 0.00 0.00 1.52
1920 1963 1.304952 CACCGGGCCCCAGATTTTA 59.695 57.895 18.66 0.00 0.00 1.52
1921 1964 2.037208 CACCGGGCCCCAGATTTT 59.963 61.111 18.66 0.00 0.00 1.82
1928 1971 3.770040 GATTTTGCACCGGGCCCC 61.770 66.667 18.66 1.60 43.89 5.80
1992 2035 5.587388 AGAACGTCTTATATCGTGGGAAA 57.413 39.130 0.00 0.00 40.19 3.13
1993 2036 5.345702 CAAGAACGTCTTATATCGTGGGAA 58.654 41.667 0.00 0.00 40.19 3.97
2000 2043 5.975410 AGCTTGCAAGAACGTCTTATATC 57.025 39.130 30.39 7.17 33.78 1.63
2010 2053 5.523369 ACTTTGATGTTAGCTTGCAAGAAC 58.477 37.500 30.39 23.88 0.00 3.01
2013 2056 5.522456 TCAACTTTGATGTTAGCTTGCAAG 58.478 37.500 22.44 22.44 31.01 4.01
2014 2057 5.512753 TCAACTTTGATGTTAGCTTGCAA 57.487 34.783 0.00 0.00 31.01 4.08
2016 2059 8.693542 AAATATCAACTTTGATGTTAGCTTGC 57.306 30.769 13.67 0.00 44.70 4.01
2046 2144 8.121305 TGGCAAGATGTAAATACTTTTGTGAT 57.879 30.769 0.00 0.00 0.00 3.06
2139 2238 1.303317 CTCCAACCTTTGACCCCCG 60.303 63.158 0.00 0.00 0.00 5.73
2188 2287 7.391554 CCCTTCTCAGTATTTGTCTCATTTTCA 59.608 37.037 0.00 0.00 0.00 2.69
2189 2288 7.607991 TCCCTTCTCAGTATTTGTCTCATTTTC 59.392 37.037 0.00 0.00 0.00 2.29
2190 2289 7.391833 GTCCCTTCTCAGTATTTGTCTCATTTT 59.608 37.037 0.00 0.00 0.00 1.82
2191 2290 6.881602 GTCCCTTCTCAGTATTTGTCTCATTT 59.118 38.462 0.00 0.00 0.00 2.32
2192 2291 6.013379 TGTCCCTTCTCAGTATTTGTCTCATT 60.013 38.462 0.00 0.00 0.00 2.57
2193 2292 5.485353 TGTCCCTTCTCAGTATTTGTCTCAT 59.515 40.000 0.00 0.00 0.00 2.90
2194 2293 4.838423 TGTCCCTTCTCAGTATTTGTCTCA 59.162 41.667 0.00 0.00 0.00 3.27
2195 2294 5.407407 TGTCCCTTCTCAGTATTTGTCTC 57.593 43.478 0.00 0.00 0.00 3.36
2196 2295 5.485353 TCATGTCCCTTCTCAGTATTTGTCT 59.515 40.000 0.00 0.00 0.00 3.41
2197 2296 5.734720 TCATGTCCCTTCTCAGTATTTGTC 58.265 41.667 0.00 0.00 0.00 3.18
2198 2297 5.738909 CTCATGTCCCTTCTCAGTATTTGT 58.261 41.667 0.00 0.00 0.00 2.83
2199 2298 4.574013 GCTCATGTCCCTTCTCAGTATTTG 59.426 45.833 0.00 0.00 0.00 2.32
2200 2299 4.472833 AGCTCATGTCCCTTCTCAGTATTT 59.527 41.667 0.00 0.00 0.00 1.40
2201 2300 4.036518 AGCTCATGTCCCTTCTCAGTATT 58.963 43.478 0.00 0.00 0.00 1.89
2202 2301 3.640967 GAGCTCATGTCCCTTCTCAGTAT 59.359 47.826 9.40 0.00 0.00 2.12
2203 2302 3.027412 GAGCTCATGTCCCTTCTCAGTA 58.973 50.000 9.40 0.00 0.00 2.74
2204 2303 1.830477 GAGCTCATGTCCCTTCTCAGT 59.170 52.381 9.40 0.00 0.00 3.41
2205 2304 1.138661 GGAGCTCATGTCCCTTCTCAG 59.861 57.143 17.19 0.00 0.00 3.35
2206 2305 1.198713 GGAGCTCATGTCCCTTCTCA 58.801 55.000 17.19 0.00 0.00 3.27
2207 2306 1.138661 CTGGAGCTCATGTCCCTTCTC 59.861 57.143 17.19 0.00 32.49 2.87
2208 2307 1.202330 CTGGAGCTCATGTCCCTTCT 58.798 55.000 17.19 0.00 32.49 2.85
2209 2308 0.463474 GCTGGAGCTCATGTCCCTTC 60.463 60.000 17.19 0.00 38.21 3.46
2210 2309 1.606531 GCTGGAGCTCATGTCCCTT 59.393 57.895 17.19 0.00 38.21 3.95
2211 2310 2.729479 CGCTGGAGCTCATGTCCCT 61.729 63.158 17.19 0.00 39.32 4.20
2212 2311 2.202987 CGCTGGAGCTCATGTCCC 60.203 66.667 17.19 0.00 39.32 4.46
2213 2312 2.894387 GCGCTGGAGCTCATGTCC 60.894 66.667 17.19 0.00 39.32 4.02
2214 2313 2.186384 AGCGCTGGAGCTCATGTC 59.814 61.111 10.39 0.00 45.67 3.06
2233 2332 2.037381 GGTTATTAGGAGGCTCCCGAAG 59.963 54.545 29.62 0.00 37.19 3.79
2234 2333 2.044758 GGTTATTAGGAGGCTCCCGAA 58.955 52.381 29.62 23.20 37.19 4.30
2235 2334 1.062734 TGGTTATTAGGAGGCTCCCGA 60.063 52.381 29.62 18.68 37.19 5.14
2236 2335 1.070289 GTGGTTATTAGGAGGCTCCCG 59.930 57.143 29.62 0.00 37.19 5.14
2237 2336 2.124411 TGTGGTTATTAGGAGGCTCCC 58.876 52.381 29.62 13.07 37.19 4.30
2238 2337 5.071923 ACTTATGTGGTTATTAGGAGGCTCC 59.928 44.000 26.42 26.42 36.58 4.70
2239 2338 6.176014 ACTTATGTGGTTATTAGGAGGCTC 57.824 41.667 5.78 5.78 0.00 4.70
2240 2339 6.357367 CAACTTATGTGGTTATTAGGAGGCT 58.643 40.000 0.00 0.00 0.00 4.58
2241 2340 5.531287 CCAACTTATGTGGTTATTAGGAGGC 59.469 44.000 0.00 0.00 0.00 4.70
2242 2341 6.062095 CCCAACTTATGTGGTTATTAGGAGG 58.938 44.000 0.00 0.00 0.00 4.30
2243 2342 5.531287 GCCCAACTTATGTGGTTATTAGGAG 59.469 44.000 0.00 0.00 0.00 3.69
2244 2343 5.192923 AGCCCAACTTATGTGGTTATTAGGA 59.807 40.000 0.00 0.00 0.00 2.94
2245 2344 5.299279 CAGCCCAACTTATGTGGTTATTAGG 59.701 44.000 0.00 0.00 0.00 2.69
2246 2345 6.119536 TCAGCCCAACTTATGTGGTTATTAG 58.880 40.000 0.00 0.00 0.00 1.73
2247 2346 6.068461 TCAGCCCAACTTATGTGGTTATTA 57.932 37.500 0.00 0.00 0.00 0.98
2248 2347 4.929479 TCAGCCCAACTTATGTGGTTATT 58.071 39.130 0.00 0.00 0.00 1.40
2249 2348 4.227300 TCTCAGCCCAACTTATGTGGTTAT 59.773 41.667 0.00 0.00 0.00 1.89
2250 2349 3.585289 TCTCAGCCCAACTTATGTGGTTA 59.415 43.478 0.00 0.00 0.00 2.85
2251 2350 2.375174 TCTCAGCCCAACTTATGTGGTT 59.625 45.455 0.00 0.00 0.00 3.67
2252 2351 1.985159 TCTCAGCCCAACTTATGTGGT 59.015 47.619 0.00 0.00 0.00 4.16
2253 2352 2.636830 CTCTCAGCCCAACTTATGTGG 58.363 52.381 0.00 0.00 0.00 4.17
2254 2353 2.012673 GCTCTCAGCCCAACTTATGTG 58.987 52.381 0.00 0.00 34.48 3.21
2255 2354 1.406069 CGCTCTCAGCCCAACTTATGT 60.406 52.381 0.00 0.00 38.18 2.29
2256 2355 1.293924 CGCTCTCAGCCCAACTTATG 58.706 55.000 0.00 0.00 38.18 1.90
2257 2356 0.462759 GCGCTCTCAGCCCAACTTAT 60.463 55.000 0.00 0.00 38.18 1.73
2258 2357 1.079127 GCGCTCTCAGCCCAACTTA 60.079 57.895 0.00 0.00 38.18 2.24
2259 2358 2.359230 GCGCTCTCAGCCCAACTT 60.359 61.111 0.00 0.00 38.18 2.66
2260 2359 3.630013 TGCGCTCTCAGCCCAACT 61.630 61.111 9.73 0.00 38.18 3.16
2261 2360 3.426568 GTGCGCTCTCAGCCCAAC 61.427 66.667 9.73 0.00 38.18 3.77
2262 2361 4.704833 GGTGCGCTCTCAGCCCAA 62.705 66.667 9.73 0.00 38.18 4.12
2265 2364 3.890936 AAGTGGTGCGCTCTCAGCC 62.891 63.158 9.73 1.86 38.18 4.85
2266 2365 2.358003 AAGTGGTGCGCTCTCAGC 60.358 61.111 9.73 0.00 38.02 4.26
2267 2366 1.005748 TCAAGTGGTGCGCTCTCAG 60.006 57.895 9.73 0.00 0.00 3.35
2268 2367 1.300931 GTCAAGTGGTGCGCTCTCA 60.301 57.895 9.73 2.53 0.00 3.27
2269 2368 2.375766 CGTCAAGTGGTGCGCTCTC 61.376 63.158 9.73 1.97 0.00 3.20
2270 2369 2.356313 CGTCAAGTGGTGCGCTCT 60.356 61.111 9.73 0.00 0.00 4.09
2271 2370 4.077188 GCGTCAAGTGGTGCGCTC 62.077 66.667 9.73 4.47 44.26 5.03
2275 2374 1.687494 GAGATCGCGTCAAGTGGTGC 61.687 60.000 5.77 0.00 0.00 5.01
2276 2375 0.388520 TGAGATCGCGTCAAGTGGTG 60.389 55.000 5.77 0.00 0.00 4.17
2277 2376 0.109086 CTGAGATCGCGTCAAGTGGT 60.109 55.000 5.77 0.00 0.00 4.16
2278 2377 1.416813 GCTGAGATCGCGTCAAGTGG 61.417 60.000 5.77 0.00 0.00 4.00
2279 2378 1.416813 GGCTGAGATCGCGTCAAGTG 61.417 60.000 5.77 0.00 0.00 3.16
2280 2379 1.153745 GGCTGAGATCGCGTCAAGT 60.154 57.895 5.77 0.00 0.00 3.16
2281 2380 1.153765 TGGCTGAGATCGCGTCAAG 60.154 57.895 5.77 6.53 0.00 3.02
2282 2381 1.446099 GTGGCTGAGATCGCGTCAA 60.446 57.895 5.77 0.00 0.00 3.18
2283 2382 2.181777 GTGGCTGAGATCGCGTCA 59.818 61.111 5.77 1.08 0.00 4.35
2284 2383 2.583593 GGTGGCTGAGATCGCGTC 60.584 66.667 5.77 2.98 0.00 5.19
2285 2384 4.498520 CGGTGGCTGAGATCGCGT 62.499 66.667 5.77 0.00 0.00 6.01
2288 2387 4.147449 TGGCGGTGGCTGAGATCG 62.147 66.667 0.00 0.00 39.81 3.69
2289 2388 2.512515 GTGGCGGTGGCTGAGATC 60.513 66.667 0.00 0.00 39.81 2.75
2290 2389 4.457496 CGTGGCGGTGGCTGAGAT 62.457 66.667 0.00 0.00 39.81 2.75
2303 2402 4.368808 CCAAAGCGCGACACGTGG 62.369 66.667 21.57 5.21 46.11 4.94
2304 2403 3.163110 AACCAAAGCGCGACACGTG 62.163 57.895 15.48 15.48 46.11 4.49
2305 2404 2.893404 AACCAAAGCGCGACACGT 60.893 55.556 12.10 0.00 46.11 4.49
2307 2406 0.928451 GAACAACCAAAGCGCGACAC 60.928 55.000 12.10 0.00 0.00 3.67
2308 2407 1.353804 GAACAACCAAAGCGCGACA 59.646 52.632 12.10 0.00 0.00 4.35
2309 2408 1.370051 GGAACAACCAAAGCGCGAC 60.370 57.895 12.10 0.04 38.79 5.19
2310 2409 2.548295 GGGAACAACCAAAGCGCGA 61.548 57.895 12.10 0.00 41.20 5.87
2311 2410 2.050442 GGGAACAACCAAAGCGCG 60.050 61.111 0.00 0.00 41.20 6.86
2312 2411 1.172812 AGAGGGAACAACCAAAGCGC 61.173 55.000 0.00 0.00 41.20 5.92
2313 2412 0.593128 CAGAGGGAACAACCAAAGCG 59.407 55.000 0.00 0.00 41.20 4.68
2314 2413 0.961753 CCAGAGGGAACAACCAAAGC 59.038 55.000 0.00 0.00 41.20 3.51
2327 2426 1.852067 CGTGCGGAAAAACCCAGAGG 61.852 60.000 0.00 0.00 40.04 3.69
2328 2427 0.882927 TCGTGCGGAAAAACCCAGAG 60.883 55.000 0.00 0.00 34.64 3.35
2329 2428 0.882927 CTCGTGCGGAAAAACCCAGA 60.883 55.000 0.00 0.00 34.64 3.86
2330 2429 1.164041 ACTCGTGCGGAAAAACCCAG 61.164 55.000 0.00 0.00 34.64 4.45
2331 2430 0.748729 AACTCGTGCGGAAAAACCCA 60.749 50.000 0.00 0.00 34.64 4.51
2332 2431 0.382873 AAACTCGTGCGGAAAAACCC 59.617 50.000 0.00 0.00 34.64 4.11
2333 2432 2.114056 GAAAACTCGTGCGGAAAAACC 58.886 47.619 0.00 0.00 0.00 3.27
2334 2433 1.771291 CGAAAACTCGTGCGGAAAAAC 59.229 47.619 0.00 0.00 0.00 2.43
2335 2434 1.268133 CCGAAAACTCGTGCGGAAAAA 60.268 47.619 0.00 0.00 46.29 1.94
2336 2435 0.305313 CCGAAAACTCGTGCGGAAAA 59.695 50.000 0.00 0.00 46.29 2.29
2337 2436 1.935925 CCGAAAACTCGTGCGGAAA 59.064 52.632 0.00 0.00 46.29 3.13
2338 2437 2.600475 GCCGAAAACTCGTGCGGAA 61.600 57.895 0.00 0.00 46.29 4.30
2339 2438 2.981977 AAGCCGAAAACTCGTGCGGA 62.982 55.000 0.00 0.00 46.29 5.54
2340 2439 2.113131 AAAGCCGAAAACTCGTGCGG 62.113 55.000 0.00 0.00 46.14 5.69
2341 2440 0.316689 AAAAGCCGAAAACTCGTGCG 60.317 50.000 0.00 0.00 35.54 5.34
2342 2441 1.835121 AAAAAGCCGAAAACTCGTGC 58.165 45.000 0.00 0.00 0.00 5.34
2343 2442 4.461992 TCTAAAAAGCCGAAAACTCGTG 57.538 40.909 0.00 0.00 0.00 4.35
2344 2443 4.083484 CCATCTAAAAAGCCGAAAACTCGT 60.083 41.667 0.00 0.00 0.00 4.18
2345 2444 4.083484 ACCATCTAAAAAGCCGAAAACTCG 60.083 41.667 0.00 0.00 0.00 4.18
2346 2445 5.372547 ACCATCTAAAAAGCCGAAAACTC 57.627 39.130 0.00 0.00 0.00 3.01
2347 2446 5.535030 AGAACCATCTAAAAAGCCGAAAACT 59.465 36.000 0.00 0.00 32.88 2.66
2348 2447 5.769367 AGAACCATCTAAAAAGCCGAAAAC 58.231 37.500 0.00 0.00 32.88 2.43
2349 2448 6.399639 AAGAACCATCTAAAAAGCCGAAAA 57.600 33.333 0.00 0.00 33.77 2.29
2350 2449 6.183360 ACAAAGAACCATCTAAAAAGCCGAAA 60.183 34.615 0.00 0.00 33.77 3.46
2351 2450 5.300792 ACAAAGAACCATCTAAAAAGCCGAA 59.699 36.000 0.00 0.00 33.77 4.30
2352 2451 4.825085 ACAAAGAACCATCTAAAAAGCCGA 59.175 37.500 0.00 0.00 33.77 5.54
2353 2452 5.121221 ACAAAGAACCATCTAAAAAGCCG 57.879 39.130 0.00 0.00 33.77 5.52
2354 2453 7.786178 AAAACAAAGAACCATCTAAAAAGCC 57.214 32.000 0.00 0.00 33.77 4.35
2377 2476 7.149307 AGAAAGACTGTTGAAAAACCGAAAAA 58.851 30.769 0.00 0.00 0.00 1.94
2378 2477 6.683715 AGAAAGACTGTTGAAAAACCGAAAA 58.316 32.000 0.00 0.00 0.00 2.29
2379 2478 6.262193 AGAAAGACTGTTGAAAAACCGAAA 57.738 33.333 0.00 0.00 0.00 3.46
2380 2479 5.890424 AGAAAGACTGTTGAAAAACCGAA 57.110 34.783 0.00 0.00 0.00 4.30
2381 2480 5.890424 AAGAAAGACTGTTGAAAAACCGA 57.110 34.783 0.00 0.00 0.00 4.69
2382 2481 5.681543 GCTAAGAAAGACTGTTGAAAAACCG 59.318 40.000 0.00 0.00 0.00 4.44
2383 2482 6.796426 AGCTAAGAAAGACTGTTGAAAAACC 58.204 36.000 0.00 0.00 0.00 3.27
2384 2483 8.689251 AAAGCTAAGAAAGACTGTTGAAAAAC 57.311 30.769 0.00 0.00 0.00 2.43
2385 2484 9.705290 AAAAAGCTAAGAAAGACTGTTGAAAAA 57.295 25.926 0.00 0.00 0.00 1.94
2386 2485 9.139174 CAAAAAGCTAAGAAAGACTGTTGAAAA 57.861 29.630 0.00 0.00 0.00 2.29
2387 2486 8.519526 TCAAAAAGCTAAGAAAGACTGTTGAAA 58.480 29.630 0.00 0.00 0.00 2.69
2388 2487 7.968405 GTCAAAAAGCTAAGAAAGACTGTTGAA 59.032 33.333 0.00 0.00 0.00 2.69
2389 2488 7.120579 TGTCAAAAAGCTAAGAAAGACTGTTGA 59.879 33.333 0.00 0.00 0.00 3.18
2390 2489 7.250569 TGTCAAAAAGCTAAGAAAGACTGTTG 58.749 34.615 0.00 0.00 0.00 3.33
2391 2490 7.391148 TGTCAAAAAGCTAAGAAAGACTGTT 57.609 32.000 0.00 0.00 0.00 3.16
2392 2491 7.391148 TTGTCAAAAAGCTAAGAAAGACTGT 57.609 32.000 0.00 0.00 0.00 3.55
2393 2492 7.754924 TGTTTGTCAAAAAGCTAAGAAAGACTG 59.245 33.333 0.00 0.00 0.00 3.51
2394 2493 7.826690 TGTTTGTCAAAAAGCTAAGAAAGACT 58.173 30.769 0.00 0.00 0.00 3.24
2395 2494 8.460831 TTGTTTGTCAAAAAGCTAAGAAAGAC 57.539 30.769 0.00 0.00 32.64 3.01
2411 2510 9.443283 CAACTGTTTTTGAATTTTTGTTTGTCA 57.557 25.926 0.00 0.00 0.00 3.58
2412 2511 8.416424 GCAACTGTTTTTGAATTTTTGTTTGTC 58.584 29.630 0.00 0.00 0.00 3.18
2413 2512 7.112705 CGCAACTGTTTTTGAATTTTTGTTTGT 59.887 29.630 0.00 0.00 0.00 2.83
2414 2513 7.427725 CGCAACTGTTTTTGAATTTTTGTTTG 58.572 30.769 0.00 0.00 0.00 2.93
2415 2514 6.087423 GCGCAACTGTTTTTGAATTTTTGTTT 59.913 30.769 0.30 0.00 0.00 2.83
2416 2515 5.567154 GCGCAACTGTTTTTGAATTTTTGTT 59.433 32.000 0.30 0.00 0.00 2.83
2417 2516 5.085390 GCGCAACTGTTTTTGAATTTTTGT 58.915 33.333 0.30 0.00 0.00 2.83
2418 2517 5.084722 TGCGCAACTGTTTTTGAATTTTTG 58.915 33.333 8.16 0.00 0.00 2.44
2419 2518 5.288543 TGCGCAACTGTTTTTGAATTTTT 57.711 30.435 8.16 0.00 0.00 1.94
2420 2519 4.935885 TGCGCAACTGTTTTTGAATTTT 57.064 31.818 8.16 0.00 0.00 1.82
2421 2520 4.935885 TTGCGCAACTGTTTTTGAATTT 57.064 31.818 21.02 0.00 0.00 1.82
2422 2521 4.935885 TTTGCGCAACTGTTTTTGAATT 57.064 31.818 24.99 0.00 0.00 2.17
2423 2522 4.935885 TTTTGCGCAACTGTTTTTGAAT 57.064 31.818 24.99 0.00 0.00 2.57
2424 2523 4.732285 TTTTTGCGCAACTGTTTTTGAA 57.268 31.818 24.99 8.26 0.00 2.69
2443 2542 6.825610 TCTTGCAGGGAAATAACACATTTTT 58.174 32.000 0.00 0.00 0.00 1.94
2444 2543 6.418057 TCTTGCAGGGAAATAACACATTTT 57.582 33.333 0.00 0.00 0.00 1.82
2445 2544 5.047092 CCTCTTGCAGGGAAATAACACATTT 60.047 40.000 0.00 0.00 38.91 2.32
2446 2545 4.463891 CCTCTTGCAGGGAAATAACACATT 59.536 41.667 0.00 0.00 38.91 2.71
2447 2546 4.019174 CCTCTTGCAGGGAAATAACACAT 58.981 43.478 0.00 0.00 38.91 3.21
2448 2547 3.420893 CCTCTTGCAGGGAAATAACACA 58.579 45.455 0.00 0.00 38.91 3.72
2449 2548 2.164422 GCCTCTTGCAGGGAAATAACAC 59.836 50.000 0.00 0.00 43.70 3.32
2450 2549 2.446435 GCCTCTTGCAGGGAAATAACA 58.554 47.619 0.00 0.00 43.70 2.41
2462 2561 0.105039 AGCTATACCGTGCCTCTTGC 59.895 55.000 0.00 0.00 41.77 4.01
2463 2562 2.159099 TGAAGCTATACCGTGCCTCTTG 60.159 50.000 0.00 0.00 0.00 3.02
2464 2563 2.101582 CTGAAGCTATACCGTGCCTCTT 59.898 50.000 0.00 0.00 0.00 2.85
2465 2564 1.683917 CTGAAGCTATACCGTGCCTCT 59.316 52.381 0.00 0.00 0.00 3.69
2466 2565 1.870167 GCTGAAGCTATACCGTGCCTC 60.870 57.143 0.00 0.00 38.21 4.70
2467 2566 0.105039 GCTGAAGCTATACCGTGCCT 59.895 55.000 0.00 0.00 38.21 4.75
2468 2567 1.215655 CGCTGAAGCTATACCGTGCC 61.216 60.000 0.10 0.00 39.32 5.01
2469 2568 0.248907 TCGCTGAAGCTATACCGTGC 60.249 55.000 0.10 0.00 39.32 5.34
2470 2569 1.333931 TCTCGCTGAAGCTATACCGTG 59.666 52.381 0.10 0.00 39.32 4.94
2471 2570 1.604755 CTCTCGCTGAAGCTATACCGT 59.395 52.381 0.10 0.00 39.32 4.83
2472 2571 1.068885 CCTCTCGCTGAAGCTATACCG 60.069 57.143 0.10 0.00 39.32 4.02
2473 2572 1.336424 GCCTCTCGCTGAAGCTATACC 60.336 57.143 0.10 0.00 39.32 2.73
2474 2573 1.338337 TGCCTCTCGCTGAAGCTATAC 59.662 52.381 0.10 0.00 39.32 1.47
2475 2574 1.692411 TGCCTCTCGCTGAAGCTATA 58.308 50.000 0.10 0.00 39.32 1.31
2476 2575 0.826715 TTGCCTCTCGCTGAAGCTAT 59.173 50.000 0.10 0.00 39.32 2.97
2477 2576 0.174389 CTTGCCTCTCGCTGAAGCTA 59.826 55.000 0.10 0.00 39.32 3.32
2478 2577 1.079266 CTTGCCTCTCGCTGAAGCT 60.079 57.895 0.10 0.00 39.32 3.74
2479 2578 2.105466 CCTTGCCTCTCGCTGAAGC 61.105 63.158 0.00 0.00 38.78 3.86
2480 2579 2.105466 GCCTTGCCTCTCGCTGAAG 61.105 63.158 0.00 0.00 38.78 3.02
2481 2580 2.046892 GCCTTGCCTCTCGCTGAA 60.047 61.111 0.00 0.00 38.78 3.02
2482 2581 4.087892 GGCCTTGCCTCTCGCTGA 62.088 66.667 0.00 0.00 46.69 4.26
2497 2596 0.040067 CAGTTTTCAAGAGGCACGGC 60.040 55.000 0.00 0.00 0.00 5.68
2498 2597 1.593196 TCAGTTTTCAAGAGGCACGG 58.407 50.000 0.00 0.00 0.00 4.94
2499 2598 3.691049 TTTCAGTTTTCAAGAGGCACG 57.309 42.857 0.00 0.00 0.00 5.34
2544 2643 6.484364 AATTTGCCTCTCAAGGAAGAAAAA 57.516 33.333 0.00 0.00 46.67 1.94
2545 2644 6.484364 AAATTTGCCTCTCAAGGAAGAAAA 57.516 33.333 0.00 0.00 46.67 2.29
2546 2645 6.484364 AAAATTTGCCTCTCAAGGAAGAAA 57.516 33.333 0.00 0.00 46.67 2.52
2547 2646 6.484364 AAAAATTTGCCTCTCAAGGAAGAA 57.516 33.333 0.00 0.00 46.67 2.52
2567 2666 0.951558 GCCTCTCGTGGAAGCAAAAA 59.048 50.000 0.00 0.00 32.03 1.94
2568 2667 0.179032 TGCCTCTCGTGGAAGCAAAA 60.179 50.000 2.93 0.00 38.32 2.44
2569 2668 0.884704 GTGCCTCTCGTGGAAGCAAA 60.885 55.000 6.14 0.00 42.24 3.68
2570 2669 1.301716 GTGCCTCTCGTGGAAGCAA 60.302 57.895 6.14 0.00 42.24 3.91
2571 2670 2.343758 GTGCCTCTCGTGGAAGCA 59.656 61.111 0.00 1.60 38.87 3.91
2572 2671 2.811317 CGTGCCTCTCGTGGAAGC 60.811 66.667 0.00 0.00 32.35 3.86
2573 2672 2.125912 CCGTGCCTCTCGTGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
2574 2673 4.373116 GCCGTGCCTCTCGTGGAA 62.373 66.667 0.00 0.00 0.00 3.53
2576 2675 4.803426 GAGCCGTGCCTCTCGTGG 62.803 72.222 0.00 0.00 0.00 4.94
2577 2676 3.753434 AGAGCCGTGCCTCTCGTG 61.753 66.667 0.00 0.00 37.66 4.35
2578 2677 3.753434 CAGAGCCGTGCCTCTCGT 61.753 66.667 0.00 0.00 40.11 4.18
2580 2679 2.794820 AAAGCAGAGCCGTGCCTCTC 62.795 60.000 4.30 0.00 45.20 3.20
2581 2680 2.794820 GAAAGCAGAGCCGTGCCTCT 62.795 60.000 4.30 0.00 45.20 3.69
2582 2681 2.359230 AAAGCAGAGCCGTGCCTC 60.359 61.111 4.30 0.00 45.20 4.70
2583 2682 2.359230 GAAAGCAGAGCCGTGCCT 60.359 61.111 4.30 0.00 45.20 4.75
2584 2683 2.669569 TGAAAGCAGAGCCGTGCC 60.670 61.111 4.30 0.00 45.20 5.01
2585 2684 1.785041 TTGTGAAAGCAGAGCCGTGC 61.785 55.000 0.00 0.00 44.35 5.34
2586 2685 0.236711 CTTGTGAAAGCAGAGCCGTG 59.763 55.000 0.00 0.00 0.00 4.94
2587 2686 0.106708 TCTTGTGAAAGCAGAGCCGT 59.893 50.000 0.00 0.00 0.00 5.68
2588 2687 0.795085 CTCTTGTGAAAGCAGAGCCG 59.205 55.000 0.00 0.00 0.00 5.52
2589 2688 1.889545 ACTCTTGTGAAAGCAGAGCC 58.110 50.000 0.00 0.00 0.00 4.70
2590 2689 3.978718 AAACTCTTGTGAAAGCAGAGC 57.021 42.857 0.00 0.00 0.00 4.09
2619 2718 1.197721 GCAAAACCATGACTCTCACGG 59.802 52.381 0.00 0.00 35.52 4.94
2621 2720 3.817647 AGAAGCAAAACCATGACTCTCAC 59.182 43.478 0.00 0.00 0.00 3.51
2622 2721 3.817084 CAGAAGCAAAACCATGACTCTCA 59.183 43.478 0.00 0.00 0.00 3.27
2628 2727 3.817084 CTCTCACAGAAGCAAAACCATGA 59.183 43.478 0.00 0.00 0.00 3.07
2643 2742 1.414919 AGCAAAACCGTACCTCTCACA 59.585 47.619 0.00 0.00 0.00 3.58
2645 2744 2.549349 GGAAGCAAAACCGTACCTCTCA 60.549 50.000 0.00 0.00 0.00 3.27
2652 2751 1.068895 TCTCGTGGAAGCAAAACCGTA 59.931 47.619 0.00 0.00 0.00 4.02
2654 2753 0.512952 CTCTCGTGGAAGCAAAACCG 59.487 55.000 0.00 0.00 0.00 4.44
2659 2758 0.674581 CATGCCTCTCGTGGAAGCAA 60.675 55.000 8.06 0.00 43.54 3.91
2665 2764 0.738762 CACAGTCATGCCTCTCGTGG 60.739 60.000 0.00 0.00 32.54 4.94
2667 2766 1.079543 GCACAGTCATGCCTCTCGT 60.080 57.895 0.00 0.00 39.86 4.18
2707 2807 8.342634 CACCGAAGAGAAGAAAAATAGAAAACA 58.657 33.333 0.00 0.00 0.00 2.83
2708 2808 8.557029 TCACCGAAGAGAAGAAAAATAGAAAAC 58.443 33.333 0.00 0.00 0.00 2.43
2715 2815 5.241662 CCTCTCACCGAAGAGAAGAAAAAT 58.758 41.667 10.02 0.00 44.67 1.82
2721 2821 0.891373 TGCCTCTCACCGAAGAGAAG 59.109 55.000 10.02 5.09 44.67 2.85
2724 2824 1.153939 CGTGCCTCTCACCGAAGAG 60.154 63.158 3.32 3.32 42.69 2.85
2725 2825 2.636412 CCGTGCCTCTCACCGAAGA 61.636 63.158 0.00 0.00 42.69 2.87
2730 2830 1.949257 CAAAACCGTGCCTCTCACC 59.051 57.895 0.00 0.00 42.69 4.02
2732 2832 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
2736 2836 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
2754 2854 3.093278 CAAATCCGTGCCTCTCGC 58.907 61.111 0.00 0.00 38.31 5.03
2777 2877 3.188786 CACTACCGCGCCTCTTGC 61.189 66.667 0.00 0.00 0.00 4.01
2779 2879 4.452733 GGCACTACCGCGCCTCTT 62.453 66.667 0.00 0.00 45.29 2.85
2800 2900 0.040425 CTTTTCACAAGCCGTTCCCG 60.040 55.000 0.00 0.00 0.00 5.14
2801 2901 0.313987 CCTTTTCACAAGCCGTTCCC 59.686 55.000 0.00 0.00 0.00 3.97
2802 2902 0.313987 CCCTTTTCACAAGCCGTTCC 59.686 55.000 0.00 0.00 0.00 3.62
2803 2903 0.313987 CCCCTTTTCACAAGCCGTTC 59.686 55.000 0.00 0.00 0.00 3.95
2804 2904 0.106419 TCCCCTTTTCACAAGCCGTT 60.106 50.000 0.00 0.00 0.00 4.44
2805 2905 0.106419 TTCCCCTTTTCACAAGCCGT 60.106 50.000 0.00 0.00 0.00 5.68
2806 2906 1.036707 TTTCCCCTTTTCACAAGCCG 58.963 50.000 0.00 0.00 0.00 5.52
2807 2907 3.181455 ACATTTTCCCCTTTTCACAAGCC 60.181 43.478 0.00 0.00 0.00 4.35
2808 2908 3.809279 CACATTTTCCCCTTTTCACAAGC 59.191 43.478 0.00 0.00 0.00 4.01
2809 2909 3.809279 GCACATTTTCCCCTTTTCACAAG 59.191 43.478 0.00 0.00 0.00 3.16
2810 2910 3.454082 AGCACATTTTCCCCTTTTCACAA 59.546 39.130 0.00 0.00 0.00 3.33
2811 2911 3.037549 AGCACATTTTCCCCTTTTCACA 58.962 40.909 0.00 0.00 0.00 3.58
2812 2912 3.554960 GGAGCACATTTTCCCCTTTTCAC 60.555 47.826 0.00 0.00 0.00 3.18
2813 2913 2.632512 GGAGCACATTTTCCCCTTTTCA 59.367 45.455 0.00 0.00 0.00 2.69
2814 2914 2.028112 GGGAGCACATTTTCCCCTTTTC 60.028 50.000 0.00 0.00 46.15 2.29
2815 2915 1.977854 GGGAGCACATTTTCCCCTTTT 59.022 47.619 0.00 0.00 46.15 2.27
2822 2922 2.365293 ACCAAACAGGGAGCACATTTTC 59.635 45.455 0.00 0.00 43.89 2.29
2827 2927 1.859302 AAAACCAAACAGGGAGCACA 58.141 45.000 0.00 0.00 43.89 4.57
2874 2976 7.051000 TCCCATGTTGATACGTTTTGATGATA 58.949 34.615 0.00 0.00 0.00 2.15
2876 2978 5.249420 TCCCATGTTGATACGTTTTGATGA 58.751 37.500 0.00 0.00 0.00 2.92
2877 2979 5.559427 TCCCATGTTGATACGTTTTGATG 57.441 39.130 0.00 0.00 0.00 3.07
2878 2980 6.122277 AGATCCCATGTTGATACGTTTTGAT 58.878 36.000 0.00 0.00 0.00 2.57
2886 2990 8.506168 TTCAAAACTAGATCCCATGTTGATAC 57.494 34.615 0.00 0.00 0.00 2.24
2904 3008 4.058817 ACTCATGTCGAGGTCTTCAAAAC 58.941 43.478 0.00 0.00 46.98 2.43
2914 3018 0.458543 CCGTTGGACTCATGTCGAGG 60.459 60.000 0.00 0.00 46.98 4.63
2919 3023 2.616842 GTTTTCACCGTTGGACTCATGT 59.383 45.455 0.00 0.00 0.00 3.21
2921 3025 2.878406 CAGTTTTCACCGTTGGACTCAT 59.122 45.455 0.00 0.00 0.00 2.90
2922 3026 2.093394 TCAGTTTTCACCGTTGGACTCA 60.093 45.455 0.00 0.00 0.00 3.41
2925 3032 5.622770 AATATCAGTTTTCACCGTTGGAC 57.377 39.130 0.00 0.00 0.00 4.02
2949 3060 5.203358 TGTTTCTCTTAAATCGTGCATCG 57.797 39.130 0.00 0.00 41.41 3.84
2984 3098 7.116736 GGGAGTTTTTCCTTTATCATAGGTCA 58.883 38.462 0.00 0.00 45.98 4.02
2985 3099 7.116736 TGGGAGTTTTTCCTTTATCATAGGTC 58.883 38.462 0.00 0.00 45.98 3.85
2987 3101 6.547510 CCTGGGAGTTTTTCCTTTATCATAGG 59.452 42.308 0.00 0.00 45.98 2.57
2991 3105 5.333566 ACCTGGGAGTTTTTCCTTTATCA 57.666 39.130 0.00 0.00 45.98 2.15
2993 3107 4.283467 GCAACCTGGGAGTTTTTCCTTTAT 59.717 41.667 0.00 0.00 45.98 1.40
2994 3108 3.639561 GCAACCTGGGAGTTTTTCCTTTA 59.360 43.478 0.00 0.00 45.98 1.85
2998 3112 0.313987 CGCAACCTGGGAGTTTTTCC 59.686 55.000 0.00 0.00 46.00 3.13
3000 3114 1.029681 GTCGCAACCTGGGAGTTTTT 58.970 50.000 0.00 0.00 40.09 1.94
3001 3115 0.106918 TGTCGCAACCTGGGAGTTTT 60.107 50.000 0.00 0.00 40.09 2.43
3041 3156 1.837439 TCCTCAGGTTGTGACAAGTGT 59.163 47.619 0.00 0.00 0.00 3.55
3058 3173 2.021042 TCCAAATATCACTCCCCCTCCT 60.021 50.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.