Multiple sequence alignment - TraesCS1B01G408600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G408600 chr1B 100.000 4076 0 0 1 4076 636261266 636265341 0.000000e+00 7528
1 TraesCS1B01G408600 chr1B 83.696 184 24 5 3236 3418 636304108 636304286 7.010000e-38 169
2 TraesCS1B01G408600 chr1B 92.437 119 6 3 3635 3752 636752849 636752965 2.520000e-37 167
3 TraesCS1B01G408600 chr1A 92.402 2948 138 37 984 3905 553704756 553707643 0.000000e+00 4124
4 TraesCS1B01G408600 chr1A 83.491 636 44 35 317 918 553704118 553704726 1.670000e-148 536
5 TraesCS1B01G408600 chr1A 88.591 149 13 2 317 461 553703139 553703287 1.160000e-40 178
6 TraesCS1B01G408600 chr1D 89.792 2018 65 42 269 2238 462050699 462052623 0.000000e+00 2455
7 TraesCS1B01G408600 chr1D 91.461 1417 71 22 2285 3675 462052700 462054092 0.000000e+00 1901
8 TraesCS1B01G408600 chr1D 89.342 319 25 7 3593 3905 462054094 462054409 3.820000e-105 392
9 TraesCS1B01G408600 chr1D 88.312 231 25 1 1 229 493226747 493226517 4.010000e-70 276
10 TraesCS1B01G408600 chr1D 86.864 236 27 3 1 232 232146215 232145980 1.120000e-65 261
11 TraesCS1B01G408600 chr5D 89.083 229 21 2 2 228 344691570 344691796 8.630000e-72 281
12 TraesCS1B01G408600 chr5D 96.774 93 2 1 3661 3752 521839690 521839782 1.960000e-33 154
13 TraesCS1B01G408600 chr6B 88.596 228 23 3 3 228 632522411 632522637 1.440000e-69 274
14 TraesCS1B01G408600 chr3D 87.931 232 26 2 1 230 47217600 47217831 5.190000e-69 272
15 TraesCS1B01G408600 chr7D 88.261 230 22 4 1 226 412230290 412230062 1.870000e-68 270
16 TraesCS1B01G408600 chr7D 87.446 231 27 1 1 229 616482578 616482348 8.690000e-67 265
17 TraesCS1B01G408600 chr7D 97.727 88 1 1 3659 3745 598698201 598698288 2.540000e-32 150
18 TraesCS1B01G408600 chr2D 87.879 231 26 1 1 229 366473892 366473662 1.870000e-68 270
19 TraesCS1B01G408600 chr2D 96.591 88 2 1 3658 3744 50019819 50019906 1.180000e-30 145
20 TraesCS1B01G408600 chr3B 87.391 230 27 2 1 228 244684575 244684804 3.120000e-66 263
21 TraesCS1B01G408600 chr7B 96.739 92 2 1 3660 3750 677754310 677754219 7.060000e-33 152
22 TraesCS1B01G408600 chr5B 96.667 90 2 1 3659 3748 658458315 658458227 9.130000e-32 148
23 TraesCS1B01G408600 chr5B 93.814 97 3 3 3659 3754 658381037 658381131 4.250000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G408600 chr1B 636261266 636265341 4075 False 7528.000000 7528 100.000000 1 4076 1 chr1B.!!$F1 4075
1 TraesCS1B01G408600 chr1A 553703139 553707643 4504 False 1612.666667 4124 88.161333 317 3905 3 chr1A.!!$F1 3588
2 TraesCS1B01G408600 chr1D 462050699 462054409 3710 False 1582.666667 2455 90.198333 269 3905 3 chr1D.!!$F1 3636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.099791 CGTTTGGCCGTCTTTTGTGT 59.900 50.0 0.00 0.0 0.0 3.72 F
1642 2366 0.179134 CGACCACTCCTTCATCGTCC 60.179 60.0 0.00 0.0 0.0 4.79 F
2435 3213 0.039618 TTTTGGTCCCTCCATGGCTC 59.960 55.0 6.96 0.0 46.6 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 2623 0.674581 TCGGCTTGTGCAGAGGAATG 60.675 55.0 0.00 0.00 38.41 2.67 R
2778 3573 0.750546 CCACCAGGCTGATGATGTGG 60.751 60.0 20.49 20.49 37.51 4.17 R
4016 4907 0.890683 CCAGGTTGAAATGGACAGCC 59.109 55.0 0.00 0.00 39.02 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.153330 GGCCCGGGGAGAGGAGTA 62.153 72.222 25.28 0.00 0.00 2.59
38 39 2.198980 CCCGGGGAGAGGAGTAGG 59.801 72.222 14.71 0.00 0.00 3.18
39 40 2.522193 CCGGGGAGAGGAGTAGGC 60.522 72.222 0.00 0.00 0.00 3.93
40 41 2.907917 CGGGGAGAGGAGTAGGCG 60.908 72.222 0.00 0.00 0.00 5.52
41 42 3.228017 GGGGAGAGGAGTAGGCGC 61.228 72.222 0.00 0.00 0.00 6.53
43 44 2.787567 GGGAGAGGAGTAGGCGCAC 61.788 68.421 10.83 0.00 0.00 5.34
44 45 2.409651 GAGAGGAGTAGGCGCACG 59.590 66.667 10.83 0.00 0.00 5.34
45 46 3.127352 GAGAGGAGTAGGCGCACGG 62.127 68.421 10.83 0.00 0.00 4.94
46 47 4.208686 GAGGAGTAGGCGCACGGG 62.209 72.222 10.83 0.00 0.00 5.28
58 59 4.039357 CACGGGCGTCTGTCTCGT 62.039 66.667 0.00 0.00 34.19 4.18
59 60 3.292936 ACGGGCGTCTGTCTCGTT 61.293 61.111 0.00 0.00 0.00 3.85
60 61 2.049433 CGGGCGTCTGTCTCGTTT 60.049 61.111 0.00 0.00 0.00 3.60
61 62 2.087009 CGGGCGTCTGTCTCGTTTC 61.087 63.158 0.00 0.00 0.00 2.78
62 63 1.737008 GGGCGTCTGTCTCGTTTCC 60.737 63.158 0.00 0.00 0.00 3.13
63 64 2.087009 GGCGTCTGTCTCGTTTCCG 61.087 63.158 0.00 0.00 0.00 4.30
64 65 1.371389 GCGTCTGTCTCGTTTCCGT 60.371 57.895 0.00 0.00 35.01 4.69
65 66 1.606350 GCGTCTGTCTCGTTTCCGTG 61.606 60.000 0.00 0.00 35.01 4.94
66 67 1.606350 CGTCTGTCTCGTTTCCGTGC 61.606 60.000 0.00 0.00 35.01 5.34
67 68 1.006571 TCTGTCTCGTTTCCGTGCC 60.007 57.895 0.00 0.00 35.01 5.01
68 69 2.355363 TGTCTCGTTTCCGTGCCG 60.355 61.111 0.00 0.00 35.01 5.69
69 70 2.049802 GTCTCGTTTCCGTGCCGA 60.050 61.111 0.00 0.00 35.01 5.54
70 71 2.049802 TCTCGTTTCCGTGCCGAC 60.050 61.111 0.00 0.00 35.01 4.79
71 72 3.467119 CTCGTTTCCGTGCCGACG 61.467 66.667 0.00 0.00 45.67 5.12
81 82 3.115892 TGCCGACGCAAATCCGAC 61.116 61.111 0.00 0.00 43.74 4.79
82 83 2.813908 GCCGACGCAAATCCGACT 60.814 61.111 0.00 0.00 34.03 4.18
83 84 1.517694 GCCGACGCAAATCCGACTA 60.518 57.895 0.00 0.00 34.03 2.59
84 85 1.079875 GCCGACGCAAATCCGACTAA 61.080 55.000 0.00 0.00 34.03 2.24
85 86 1.352114 CCGACGCAAATCCGACTAAA 58.648 50.000 0.00 0.00 0.00 1.85
86 87 1.727880 CCGACGCAAATCCGACTAAAA 59.272 47.619 0.00 0.00 0.00 1.52
87 88 2.158058 CCGACGCAAATCCGACTAAAAA 59.842 45.455 0.00 0.00 0.00 1.94
104 105 2.302587 AAAATGTGTCGGGAATGGGT 57.697 45.000 0.00 0.00 0.00 4.51
105 106 1.834188 AAATGTGTCGGGAATGGGTC 58.166 50.000 0.00 0.00 0.00 4.46
106 107 0.392461 AATGTGTCGGGAATGGGTCG 60.392 55.000 0.00 0.00 0.00 4.79
109 110 4.090588 GTCGGGAATGGGTCGGCA 62.091 66.667 0.00 0.00 0.00 5.69
110 111 3.087253 TCGGGAATGGGTCGGCAT 61.087 61.111 0.00 0.00 0.00 4.40
111 112 2.901840 CGGGAATGGGTCGGCATG 60.902 66.667 0.00 0.00 0.00 4.06
113 114 3.585990 GGAATGGGTCGGCATGCG 61.586 66.667 12.44 7.41 0.00 4.73
114 115 3.585990 GAATGGGTCGGCATGCGG 61.586 66.667 18.51 18.51 0.00 5.69
115 116 4.108299 AATGGGTCGGCATGCGGA 62.108 61.111 22.62 22.62 0.00 5.54
116 117 4.856801 ATGGGTCGGCATGCGGAC 62.857 66.667 36.98 36.98 42.92 4.79
139 140 4.349871 GCAGACGCGCGTTCGTTT 62.350 61.111 38.03 13.48 43.42 3.60
140 141 2.494728 CAGACGCGCGTTCGTTTG 60.495 61.111 38.03 23.83 43.42 2.93
145 146 4.712873 GCGCGTTCGTTTGGGTCG 62.713 66.667 8.43 0.00 38.14 4.79
146 147 4.067016 CGCGTTCGTTTGGGTCGG 62.067 66.667 0.00 0.00 0.00 4.79
150 151 2.203042 TTCGTTTGGGTCGGCGTT 60.203 55.556 6.85 0.00 0.00 4.84
151 152 1.818785 TTCGTTTGGGTCGGCGTTT 60.819 52.632 6.85 0.00 0.00 3.60
152 153 2.049475 TTCGTTTGGGTCGGCGTTTG 62.049 55.000 6.85 0.00 0.00 2.93
153 154 2.333581 GTTTGGGTCGGCGTTTGG 59.666 61.111 6.85 0.00 0.00 3.28
163 164 3.916439 GCGTTTGGCCGTCTTTTG 58.084 55.556 0.00 0.00 34.80 2.44
164 165 1.065109 GCGTTTGGCCGTCTTTTGT 59.935 52.632 0.00 0.00 34.80 2.83
165 166 1.206115 GCGTTTGGCCGTCTTTTGTG 61.206 55.000 0.00 0.00 34.80 3.33
166 167 0.099791 CGTTTGGCCGTCTTTTGTGT 59.900 50.000 0.00 0.00 0.00 3.72
167 168 1.835121 GTTTGGCCGTCTTTTGTGTC 58.165 50.000 0.00 0.00 0.00 3.67
169 170 1.440938 TTGGCCGTCTTTTGTGTCCG 61.441 55.000 0.00 0.00 0.00 4.79
170 171 2.251371 GCCGTCTTTTGTGTCCGC 59.749 61.111 0.00 0.00 0.00 5.54
171 172 2.549282 CCGTCTTTTGTGTCCGCG 59.451 61.111 0.00 0.00 0.00 6.46
173 174 2.251371 GTCTTTTGTGTCCGCGCC 59.749 61.111 0.00 0.00 0.00 6.53
174 175 3.342627 TCTTTTGTGTCCGCGCCG 61.343 61.111 0.00 0.00 0.00 6.46
175 176 3.342627 CTTTTGTGTCCGCGCCGA 61.343 61.111 0.00 0.00 0.00 5.54
176 177 3.573489 CTTTTGTGTCCGCGCCGAC 62.573 63.158 20.04 20.04 0.00 4.79
203 204 4.474846 CGCCGGCGGACAAAATGG 62.475 66.667 40.50 8.79 35.56 3.16
204 205 4.128388 GCCGGCGGACAAAATGGG 62.128 66.667 33.44 0.00 0.00 4.00
206 207 2.696759 CCGGCGGACAAAATGGGTC 61.697 63.158 24.41 0.00 34.52 4.46
207 208 2.874751 GGCGGACAAAATGGGTCG 59.125 61.111 0.00 0.00 36.12 4.79
208 209 2.178273 GCGGACAAAATGGGTCGC 59.822 61.111 0.00 0.00 36.12 5.19
209 210 2.874751 CGGACAAAATGGGTCGCC 59.125 61.111 0.00 0.00 36.12 5.54
210 211 2.696759 CGGACAAAATGGGTCGCCC 61.697 63.158 7.87 7.87 45.71 6.13
220 221 4.324991 GGTCGCCCCGTTGGAGTT 62.325 66.667 0.00 0.00 35.07 3.01
221 222 3.047877 GTCGCCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 35.07 3.16
226 227 1.073199 CCCCGTTGGAGTTGCTCTT 59.927 57.895 0.00 0.00 35.39 2.85
227 228 0.323629 CCCCGTTGGAGTTGCTCTTA 59.676 55.000 0.00 0.00 35.39 2.10
228 229 1.676014 CCCCGTTGGAGTTGCTCTTAG 60.676 57.143 0.00 0.00 35.39 2.18
229 230 1.002087 CCCGTTGGAGTTGCTCTTAGT 59.998 52.381 0.00 0.00 0.00 2.24
230 231 2.232941 CCCGTTGGAGTTGCTCTTAGTA 59.767 50.000 0.00 0.00 0.00 1.82
231 232 3.251571 CCGTTGGAGTTGCTCTTAGTAC 58.748 50.000 0.00 0.00 0.00 2.73
233 234 3.251571 GTTGGAGTTGCTCTTAGTACCG 58.748 50.000 0.00 0.00 0.00 4.02
235 236 2.230508 TGGAGTTGCTCTTAGTACCGTG 59.769 50.000 0.00 0.00 0.00 4.94
236 237 2.230750 GGAGTTGCTCTTAGTACCGTGT 59.769 50.000 0.00 0.00 0.00 4.49
238 239 4.304939 GAGTTGCTCTTAGTACCGTGTTT 58.695 43.478 0.00 0.00 0.00 2.83
239 240 5.458041 AGTTGCTCTTAGTACCGTGTTTA 57.542 39.130 0.00 0.00 0.00 2.01
240 241 5.467705 AGTTGCTCTTAGTACCGTGTTTAG 58.532 41.667 0.00 0.00 0.00 1.85
241 242 5.242393 AGTTGCTCTTAGTACCGTGTTTAGA 59.758 40.000 0.00 0.00 0.00 2.10
242 243 5.710513 TGCTCTTAGTACCGTGTTTAGAA 57.289 39.130 0.00 0.00 0.00 2.10
243 244 6.088016 TGCTCTTAGTACCGTGTTTAGAAA 57.912 37.500 0.00 0.00 0.00 2.52
244 245 6.514947 TGCTCTTAGTACCGTGTTTAGAAAA 58.485 36.000 0.00 0.00 0.00 2.29
245 246 6.985645 TGCTCTTAGTACCGTGTTTAGAAAAA 59.014 34.615 0.00 0.00 0.00 1.94
266 267 3.536158 AAATCAAACACGGTGACATCG 57.464 42.857 16.29 6.55 0.00 3.84
276 277 1.467342 CGGTGACATCGTGACTGACTA 59.533 52.381 0.00 0.00 27.61 2.59
284 285 1.863662 CGTGACTGACTAGTGGCGGT 61.864 60.000 0.00 0.00 37.25 5.68
367 1033 4.919168 GGTTTCCCGTATTAACAAAACAGC 59.081 41.667 0.00 0.00 29.98 4.40
401 1067 2.815647 CAAGCGACGCCTTCCCTC 60.816 66.667 17.79 0.00 0.00 4.30
502 1193 4.995594 CTTCCCCAAGCCTCCATC 57.004 61.111 0.00 0.00 0.00 3.51
503 1194 1.228510 CTTCCCCAAGCCTCCATCC 59.771 63.158 0.00 0.00 0.00 3.51
517 1208 2.835431 ATCCTCACGAGCTCCCGG 60.835 66.667 8.47 0.00 0.00 5.73
628 1335 4.543084 GCGGCCATCTGCTTTCGC 62.543 66.667 2.24 0.00 41.36 4.70
629 1336 2.821366 CGGCCATCTGCTTTCGCT 60.821 61.111 2.24 0.00 40.92 4.93
630 1337 2.817423 CGGCCATCTGCTTTCGCTC 61.817 63.158 2.24 0.00 40.92 5.03
631 1338 2.476320 GGCCATCTGCTTTCGCTCC 61.476 63.158 0.00 0.00 40.92 4.70
632 1339 2.817423 GCCATCTGCTTTCGCTCCG 61.817 63.158 0.00 0.00 36.87 4.63
633 1340 2.705826 CATCTGCTTTCGCTCCGC 59.294 61.111 0.00 0.00 36.97 5.54
697 1404 1.376812 ATTGTCGCGTCCCTTTCCC 60.377 57.895 5.77 0.00 0.00 3.97
766 1484 0.460987 CTCGCTGGGTCCAGATTCAC 60.461 60.000 20.22 1.80 46.30 3.18
791 1509 1.424638 TTGGCCCGGATTTGGAAAAA 58.575 45.000 0.73 0.00 0.00 1.94
797 1515 3.932710 GCCCGGATTTGGAAAAATCTTTC 59.067 43.478 0.73 0.00 40.31 2.62
842 1560 2.922162 TGGAGCTCCCCAGATCTTC 58.078 57.895 29.95 1.09 35.21 2.87
843 1561 0.341258 TGGAGCTCCCCAGATCTTCT 59.659 55.000 29.95 0.00 35.21 2.85
844 1562 1.047801 GGAGCTCCCCAGATCTTCTC 58.952 60.000 23.19 0.00 35.21 2.87
845 1563 1.047801 GAGCTCCCCAGATCTTCTCC 58.952 60.000 0.87 0.00 31.80 3.71
846 1564 0.641601 AGCTCCCCAGATCTTCTCCT 59.358 55.000 0.00 0.00 0.00 3.69
847 1565 0.758123 GCTCCCCAGATCTTCTCCTG 59.242 60.000 0.00 0.00 0.00 3.86
848 1566 0.758123 CTCCCCAGATCTTCTCCTGC 59.242 60.000 0.00 0.00 0.00 4.85
849 1567 0.341258 TCCCCAGATCTTCTCCTGCT 59.659 55.000 0.00 0.00 0.00 4.24
850 1568 1.211456 CCCCAGATCTTCTCCTGCTT 58.789 55.000 0.00 0.00 0.00 3.91
851 1569 1.140652 CCCCAGATCTTCTCCTGCTTC 59.859 57.143 0.00 0.00 0.00 3.86
853 1571 1.202510 CCAGATCTTCTCCTGCTTCCG 60.203 57.143 0.00 0.00 0.00 4.30
854 1572 0.463620 AGATCTTCTCCTGCTTCCGC 59.536 55.000 0.00 0.00 0.00 5.54
855 1573 0.873743 GATCTTCTCCTGCTTCCGCG 60.874 60.000 0.00 0.00 39.65 6.46
856 1574 1.608717 ATCTTCTCCTGCTTCCGCGT 61.609 55.000 4.92 0.00 39.65 6.01
857 1575 1.807573 CTTCTCCTGCTTCCGCGTC 60.808 63.158 4.92 0.00 39.65 5.19
858 1576 2.219325 CTTCTCCTGCTTCCGCGTCT 62.219 60.000 4.92 0.00 39.65 4.18
859 1577 2.202676 CTCCTGCTTCCGCGTCTC 60.203 66.667 4.92 0.00 39.65 3.36
860 1578 3.708220 CTCCTGCTTCCGCGTCTCC 62.708 68.421 4.92 0.00 39.65 3.71
861 1579 4.069232 CCTGCTTCCGCGTCTCCA 62.069 66.667 4.92 0.00 39.65 3.86
862 1580 2.811317 CTGCTTCCGCGTCTCCAC 60.811 66.667 4.92 0.00 39.65 4.02
863 1581 4.373116 TGCTTCCGCGTCTCCACC 62.373 66.667 4.92 0.00 39.65 4.61
865 1583 4.052229 CTTCCGCGTCTCCACCGT 62.052 66.667 4.92 0.00 0.00 4.83
866 1584 4.351938 TTCCGCGTCTCCACCGTG 62.352 66.667 4.92 0.00 35.69 4.94
876 1594 1.827399 CTCCACCGTGTGCTAACCCT 61.827 60.000 0.00 0.00 31.34 4.34
902 1620 2.034687 TCCTGCTTTGCTGCTCCC 59.965 61.111 0.00 0.00 0.00 4.30
914 1632 2.124778 GCTCCCAAGGCTCTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
915 1633 2.668120 GCTCCCAAGGCTCTGCTCT 61.668 63.158 0.00 0.00 0.00 4.09
916 1634 1.221293 CTCCCAAGGCTCTGCTCTG 59.779 63.158 0.00 0.00 0.00 3.35
917 1635 2.438075 CCCAAGGCTCTGCTCTGC 60.438 66.667 0.00 0.00 0.00 4.26
918 1636 2.669849 CCAAGGCTCTGCTCTGCT 59.330 61.111 0.00 0.00 0.00 4.24
919 1637 1.449956 CCAAGGCTCTGCTCTGCTC 60.450 63.158 0.00 0.00 0.00 4.26
920 1638 1.449956 CAAGGCTCTGCTCTGCTCC 60.450 63.158 0.00 0.00 0.00 4.70
921 1639 2.668120 AAGGCTCTGCTCTGCTCCC 61.668 63.158 0.00 0.00 0.00 4.30
922 1640 3.397439 GGCTCTGCTCTGCTCCCA 61.397 66.667 0.00 0.00 0.00 4.37
923 1641 2.667418 GCTCTGCTCTGCTCCCAA 59.333 61.111 0.00 0.00 0.00 4.12
924 1642 1.449956 GCTCTGCTCTGCTCCCAAG 60.450 63.158 0.00 0.00 0.00 3.61
925 1643 1.221293 CTCTGCTCTGCTCCCAAGG 59.779 63.158 0.00 0.00 0.00 3.61
926 1644 2.438075 CTGCTCTGCTCCCAAGGC 60.438 66.667 0.00 0.00 0.00 4.35
927 1645 2.932194 TGCTCTGCTCCCAAGGCT 60.932 61.111 0.00 0.00 0.00 4.58
928 1646 2.124778 GCTCTGCTCCCAAGGCTC 60.125 66.667 0.00 0.00 0.00 4.70
929 1647 2.668120 GCTCTGCTCCCAAGGCTCT 61.668 63.158 0.00 0.00 0.00 4.09
930 1648 1.221293 CTCTGCTCCCAAGGCTCTG 59.779 63.158 0.00 0.00 0.00 3.35
931 1649 2.438075 CTGCTCCCAAGGCTCTGC 60.438 66.667 0.00 0.00 0.00 4.26
932 1650 2.932194 TGCTCCCAAGGCTCTGCT 60.932 61.111 0.00 0.00 0.00 4.24
933 1651 2.438075 GCTCCCAAGGCTCTGCTG 60.438 66.667 0.00 0.00 0.00 4.41
934 1652 2.438075 CTCCCAAGGCTCTGCTGC 60.438 66.667 0.00 0.00 0.00 5.25
935 1653 4.399395 TCCCAAGGCTCTGCTGCG 62.399 66.667 0.00 0.00 0.00 5.18
1642 2366 0.179134 CGACCACTCCTTCATCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
1675 2399 4.437587 TCGACTCCGAGGACCCCC 62.438 72.222 0.00 0.00 40.30 5.40
1779 2503 5.648092 GGTCAGCAACATATTCTACCACTTT 59.352 40.000 0.00 0.00 0.00 2.66
1869 2593 1.830279 TTGCATTGCCTCTCAAGGAG 58.170 50.000 6.12 0.00 46.67 3.69
1887 2611 5.574970 AGGAGGAACACAAGATCTTTCTT 57.425 39.130 4.86 0.00 43.09 2.52
1899 2623 6.934083 ACAAGATCTTTCTTTGGAGAGTTCTC 59.066 38.462 4.86 0.39 40.28 2.87
2130 2854 5.390613 CAGAAATGTATGGTTCCGTTGTTC 58.609 41.667 0.00 0.00 0.00 3.18
2160 2884 1.875514 GCTCAGTGCATCAACAGTTCA 59.124 47.619 0.00 0.00 42.31 3.18
2199 2923 3.697166 CCTTGCCCCAAGTAACATAACT 58.303 45.455 4.48 0.00 39.58 2.24
2200 2924 4.086457 CCTTGCCCCAAGTAACATAACTT 58.914 43.478 4.48 0.00 39.58 2.66
2217 2941 8.779354 ACATAACTTGGTAATTCTGAGTTCTC 57.221 34.615 0.00 0.00 33.13 2.87
2231 2955 5.528690 TCTGAGTTCTCCAATGTTCTTGTTG 59.471 40.000 0.00 0.00 0.00 3.33
2238 2962 5.769662 TCTCCAATGTTCTTGTTGCAGTATT 59.230 36.000 0.00 0.00 0.00 1.89
2239 2963 5.771469 TCCAATGTTCTTGTTGCAGTATTG 58.229 37.500 0.00 0.00 0.00 1.90
2240 2964 5.301551 TCCAATGTTCTTGTTGCAGTATTGT 59.698 36.000 0.00 0.00 0.00 2.71
2243 2967 4.930963 TGTTCTTGTTGCAGTATTGTTGG 58.069 39.130 0.00 0.00 0.00 3.77
2245 2969 5.301551 TGTTCTTGTTGCAGTATTGTTGGAT 59.698 36.000 0.00 0.00 0.00 3.41
2246 2970 5.375417 TCTTGTTGCAGTATTGTTGGATG 57.625 39.130 0.00 0.00 0.00 3.51
2248 2972 6.000840 TCTTGTTGCAGTATTGTTGGATGTA 58.999 36.000 0.00 0.00 0.00 2.29
2277 3050 5.531287 ACTTGTTTCTGCCACTTAAACTAGG 59.469 40.000 11.34 0.00 39.02 3.02
2331 3104 8.908786 TTATGTGATGAAGTCTGAAGAAGTTT 57.091 30.769 0.00 0.00 0.00 2.66
2397 3170 0.613012 ATCAAGCAGTCCCCAAAGGC 60.613 55.000 0.00 0.00 34.51 4.35
2398 3171 2.118294 AAGCAGTCCCCAAAGGCC 59.882 61.111 0.00 0.00 34.51 5.19
2409 3182 0.541764 CCAAAGGCCCCAACAGCTAA 60.542 55.000 0.00 0.00 0.00 3.09
2432 3210 3.132824 GCTTATTTTTGGTCCCTCCATGG 59.867 47.826 4.97 4.97 46.60 3.66
2433 3211 1.571955 ATTTTTGGTCCCTCCATGGC 58.428 50.000 6.96 0.00 46.60 4.40
2434 3212 0.486879 TTTTTGGTCCCTCCATGGCT 59.513 50.000 6.96 0.00 46.60 4.75
2435 3213 0.039618 TTTTGGTCCCTCCATGGCTC 59.960 55.000 6.96 0.00 46.60 4.70
2436 3214 1.863155 TTTGGTCCCTCCATGGCTCC 61.863 60.000 6.96 5.30 46.60 4.70
2437 3215 2.692368 GGTCCCTCCATGGCTCCA 60.692 66.667 6.96 0.00 35.97 3.86
2438 3216 2.081161 GGTCCCTCCATGGCTCCAT 61.081 63.158 6.96 0.00 37.08 3.41
2475 3253 4.336433 GTGATTAGAATGTGTGGACATGGG 59.664 45.833 0.00 0.00 42.30 4.00
2503 3288 2.082231 CAACAGATGTCTGAAGCCCTG 58.918 52.381 16.41 0.00 46.59 4.45
2644 3435 5.334646 CTCAAATGAGTTCACACATCTGTGG 60.335 44.000 14.39 4.29 42.26 4.17
2660 3451 4.164981 TCTGTGGGTTATGGTCTGTTAGT 58.835 43.478 0.00 0.00 0.00 2.24
2661 3452 4.222145 TCTGTGGGTTATGGTCTGTTAGTC 59.778 45.833 0.00 0.00 0.00 2.59
2664 3455 4.020485 GTGGGTTATGGTCTGTTAGTCACT 60.020 45.833 0.00 0.00 0.00 3.41
2665 3456 4.595781 TGGGTTATGGTCTGTTAGTCACTT 59.404 41.667 0.00 0.00 0.00 3.16
2666 3457 5.781306 TGGGTTATGGTCTGTTAGTCACTTA 59.219 40.000 0.00 0.00 0.00 2.24
2682 3473 6.476378 AGTCACTTATTAGTTGGCTCACATT 58.524 36.000 0.00 0.00 30.26 2.71
2862 3657 0.110486 AACAGAACGGCCAGAACCAT 59.890 50.000 2.24 0.00 0.00 3.55
2931 3726 0.101399 CCGAGATGGACGAGGAACTG 59.899 60.000 0.00 0.00 38.93 3.16
2949 3744 2.098831 GTTCTCGGCGTGCCTAACC 61.099 63.158 6.85 0.00 0.00 2.85
2964 3759 2.025887 CCTAACCAAGTGCAAGGAGGAT 60.026 50.000 7.99 0.00 0.00 3.24
2983 3778 1.301479 GAGGAAAACCAGGCGTCGT 60.301 57.895 0.00 0.00 0.00 4.34
2988 3783 0.748729 AAAACCAGGCGTCGTTGGAA 60.749 50.000 20.18 0.00 37.89 3.53
3024 3819 1.926108 AGTGGGCGAAACTAGAGTCT 58.074 50.000 0.00 0.00 0.00 3.24
3048 3843 2.267324 GCTCTCCAGCCAGTGACC 59.733 66.667 0.00 0.00 40.14 4.02
3098 3893 1.931551 CCAACCGTCGGCGATAATG 59.068 57.895 12.93 10.24 41.33 1.90
3100 3895 0.575390 CAACCGTCGGCGATAATGTC 59.425 55.000 12.93 0.00 41.33 3.06
3197 3992 1.815003 CGCGCCCAAGTGATGATCA 60.815 57.895 0.00 0.00 0.00 2.92
3244 4039 8.493547 GCTTTTCTTCTGTACGTTGTAACTATT 58.506 33.333 0.00 0.00 0.00 1.73
3257 4052 7.340232 ACGTTGTAACTATTCCCACTATGTCTA 59.660 37.037 0.00 0.00 0.00 2.59
3315 4111 2.200067 CCTTGCGCTGAGACTCATTAG 58.800 52.381 9.73 1.84 0.00 1.73
3326 4122 6.183360 GCTGAGACTCATTAGCTGTAACTTTG 60.183 42.308 5.42 0.00 33.53 2.77
3327 4123 5.639506 TGAGACTCATTAGCTGTAACTTTGC 59.360 40.000 0.00 0.00 0.00 3.68
3329 4125 4.911390 ACTCATTAGCTGTAACTTTGCCT 58.089 39.130 0.00 0.00 0.00 4.75
3330 4126 4.697352 ACTCATTAGCTGTAACTTTGCCTG 59.303 41.667 0.00 0.00 0.00 4.85
3331 4127 4.651778 TCATTAGCTGTAACTTTGCCTGT 58.348 39.130 0.00 0.00 0.00 4.00
3334 4130 6.712998 TCATTAGCTGTAACTTTGCCTGTTTA 59.287 34.615 0.00 0.00 0.00 2.01
3335 4131 7.393234 TCATTAGCTGTAACTTTGCCTGTTTAT 59.607 33.333 0.00 0.00 0.00 1.40
3405 4201 1.671054 CGAGCAAATGTGGGGTCGT 60.671 57.895 5.21 0.00 46.48 4.34
3427 4223 3.614176 TCGAGCACGATTTCATTCTGAAG 59.386 43.478 0.88 0.00 43.81 3.02
3430 4226 3.120060 AGCACGATTTCATTCTGAAGTGC 60.120 43.478 17.85 17.85 46.97 4.40
3433 4229 4.152938 CACGATTTCATTCTGAAGTGCTGA 59.847 41.667 0.00 0.00 37.70 4.26
3475 4277 3.625853 TGACTGTTTTTGACCATGTGGA 58.374 40.909 5.96 0.00 38.94 4.02
3516 4318 8.215736 TGAATGATGATGTCAATCCTAGATGTT 58.784 33.333 0.00 0.00 40.97 2.71
3525 4327 5.471456 GTCAATCCTAGATGTTAGGGCATTG 59.529 44.000 0.00 4.88 33.59 2.82
3542 4344 8.766994 AGGGCATTGTAATTGTTGTATAGATT 57.233 30.769 0.00 0.00 0.00 2.40
3543 4345 8.850156 AGGGCATTGTAATTGTTGTATAGATTC 58.150 33.333 0.00 0.00 0.00 2.52
3544 4346 8.629158 GGGCATTGTAATTGTTGTATAGATTCA 58.371 33.333 0.00 0.00 0.00 2.57
3639 4523 9.745323 CTAGAACAAAACTTGCAAAAGAAAAAG 57.255 29.630 0.00 0.00 0.00 2.27
3641 4525 8.498358 AGAACAAAACTTGCAAAAGAAAAAGAG 58.502 29.630 0.00 0.00 0.00 2.85
3645 4529 9.321590 CAAAACTTGCAAAAGAAAAAGAGAAAG 57.678 29.630 0.00 0.00 0.00 2.62
3646 4530 8.831715 AAACTTGCAAAAGAAAAAGAGAAAGA 57.168 26.923 0.00 0.00 0.00 2.52
3656 4540 7.247929 AGAAAAAGAGAAAGACGTAGGTTTG 57.752 36.000 0.00 0.00 0.00 2.93
3751 4637 5.459107 CCTAGACTACGACGGATTTTGATTG 59.541 44.000 0.00 0.00 0.00 2.67
3752 4638 5.068234 AGACTACGACGGATTTTGATTGA 57.932 39.130 0.00 0.00 0.00 2.57
3753 4639 4.863131 AGACTACGACGGATTTTGATTGAC 59.137 41.667 0.00 0.00 0.00 3.18
3755 4641 4.992319 ACTACGACGGATTTTGATTGACAA 59.008 37.500 0.00 0.00 36.65 3.18
3791 4682 0.911769 AGATGAAGAACCCATCGGCA 59.088 50.000 0.00 0.00 43.73 5.69
3805 4696 5.186797 ACCCATCGGCAAAATTAAGAATCAA 59.813 36.000 0.00 0.00 0.00 2.57
3822 4713 4.574599 ATCAAGCAAACAACAGAAGACC 57.425 40.909 0.00 0.00 0.00 3.85
3826 4717 1.859998 GCAAACAACAGAAGACCGTGC 60.860 52.381 0.00 0.00 0.00 5.34
3840 4731 2.724174 GACCGTGCGGAAAATGAAAAAG 59.276 45.455 18.16 0.00 38.96 2.27
3842 4733 2.058057 CGTGCGGAAAATGAAAAAGGG 58.942 47.619 0.00 0.00 0.00 3.95
3856 4747 4.647399 TGAAAAAGGGTAAGGGTTCAACAG 59.353 41.667 0.00 0.00 0.00 3.16
3859 4750 4.529716 AAGGGTAAGGGTTCAACAGAAA 57.470 40.909 0.00 0.00 0.00 2.52
3905 4796 5.945784 CAGGAAGAAAATCAGGTCATGGTTA 59.054 40.000 0.00 0.00 29.80 2.85
3906 4797 6.604795 CAGGAAGAAAATCAGGTCATGGTTAT 59.395 38.462 0.00 0.00 29.80 1.89
3907 4798 7.123247 CAGGAAGAAAATCAGGTCATGGTTATT 59.877 37.037 0.00 0.00 29.80 1.40
3908 4799 7.340487 AGGAAGAAAATCAGGTCATGGTTATTC 59.660 37.037 0.00 0.00 29.80 1.75
3909 4800 7.340487 GGAAGAAAATCAGGTCATGGTTATTCT 59.660 37.037 0.00 3.59 34.05 2.40
3910 4801 8.655935 AAGAAAATCAGGTCATGGTTATTCTT 57.344 30.769 11.49 11.49 36.10 2.52
3911 4802 8.655935 AGAAAATCAGGTCATGGTTATTCTTT 57.344 30.769 0.00 0.00 31.22 2.52
3912 4803 9.093458 AGAAAATCAGGTCATGGTTATTCTTTT 57.907 29.630 0.00 0.00 31.22 2.27
3913 4804 9.358872 GAAAATCAGGTCATGGTTATTCTTTTC 57.641 33.333 0.00 0.00 29.80 2.29
3914 4805 8.655935 AAATCAGGTCATGGTTATTCTTTTCT 57.344 30.769 0.00 0.00 29.80 2.52
3915 4806 8.655935 AATCAGGTCATGGTTATTCTTTTCTT 57.344 30.769 0.00 0.00 27.37 2.52
3916 4807 8.655935 ATCAGGTCATGGTTATTCTTTTCTTT 57.344 30.769 0.00 0.00 0.00 2.52
3917 4808 8.477419 TCAGGTCATGGTTATTCTTTTCTTTT 57.523 30.769 0.00 0.00 0.00 2.27
3918 4809 9.581289 TCAGGTCATGGTTATTCTTTTCTTTTA 57.419 29.630 0.00 0.00 0.00 1.52
3933 4824 9.620660 TCTTTTCTTTTAAACTCACACTCAAAC 57.379 29.630 0.00 0.00 0.00 2.93
3934 4825 9.626045 CTTTTCTTTTAAACTCACACTCAAACT 57.374 29.630 0.00 0.00 0.00 2.66
3935 4826 9.974980 TTTTCTTTTAAACTCACACTCAAACTT 57.025 25.926 0.00 0.00 0.00 2.66
3936 4827 9.974980 TTTCTTTTAAACTCACACTCAAACTTT 57.025 25.926 0.00 0.00 0.00 2.66
3967 4858 9.764363 ATTTAAACAAGAGAAAGGATTTGGTTC 57.236 29.630 0.00 0.00 39.27 3.62
3968 4859 6.790232 AAACAAGAGAAAGGATTTGGTTCA 57.210 33.333 0.00 0.00 39.27 3.18
3969 4860 6.790232 AACAAGAGAAAGGATTTGGTTCAA 57.210 33.333 0.00 0.00 39.27 2.69
3970 4861 6.396829 ACAAGAGAAAGGATTTGGTTCAAG 57.603 37.500 0.00 0.00 39.27 3.02
3971 4862 6.129179 ACAAGAGAAAGGATTTGGTTCAAGA 58.871 36.000 0.00 0.00 39.27 3.02
3972 4863 6.607198 ACAAGAGAAAGGATTTGGTTCAAGAA 59.393 34.615 0.00 0.00 39.27 2.52
3973 4864 6.890979 AGAGAAAGGATTTGGTTCAAGAAG 57.109 37.500 0.00 0.00 39.27 2.85
3974 4865 6.605119 AGAGAAAGGATTTGGTTCAAGAAGA 58.395 36.000 0.00 0.00 39.27 2.87
3975 4866 7.062957 AGAGAAAGGATTTGGTTCAAGAAGAA 58.937 34.615 0.00 0.00 39.27 2.52
3976 4867 7.561356 AGAGAAAGGATTTGGTTCAAGAAGAAA 59.439 33.333 0.00 0.00 39.27 2.52
3977 4868 7.720442 AGAAAGGATTTGGTTCAAGAAGAAAG 58.280 34.615 0.00 0.00 39.27 2.62
3978 4869 6.410942 AAGGATTTGGTTCAAGAAGAAAGG 57.589 37.500 0.00 0.00 38.13 3.11
3979 4870 5.458595 AGGATTTGGTTCAAGAAGAAAGGT 58.541 37.500 0.00 0.00 38.13 3.50
3980 4871 5.899547 AGGATTTGGTTCAAGAAGAAAGGTT 59.100 36.000 0.00 0.00 38.13 3.50
3981 4872 6.040955 AGGATTTGGTTCAAGAAGAAAGGTTC 59.959 38.462 0.00 0.00 38.13 3.62
3982 4873 6.040955 GGATTTGGTTCAAGAAGAAAGGTTCT 59.959 38.462 0.00 0.00 43.15 3.01
3995 4886 6.605471 AGAAAGGTTCTTTGTTTGGTCTTT 57.395 33.333 0.00 0.00 36.36 2.52
3996 4887 6.398095 AGAAAGGTTCTTTGTTTGGTCTTTG 58.602 36.000 0.00 0.00 36.36 2.77
3997 4888 5.993748 AAGGTTCTTTGTTTGGTCTTTGA 57.006 34.783 0.00 0.00 0.00 2.69
3998 4889 5.582689 AGGTTCTTTGTTTGGTCTTTGAG 57.417 39.130 0.00 0.00 0.00 3.02
3999 4890 4.112634 GGTTCTTTGTTTGGTCTTTGAGC 58.887 43.478 0.00 0.00 0.00 4.26
4000 4891 4.381505 GGTTCTTTGTTTGGTCTTTGAGCA 60.382 41.667 0.00 0.00 38.32 4.26
4001 4892 5.351458 GTTCTTTGTTTGGTCTTTGAGCAT 58.649 37.500 0.24 0.00 39.81 3.79
4002 4893 4.935702 TCTTTGTTTGGTCTTTGAGCATG 58.064 39.130 0.24 0.00 39.81 4.06
4003 4894 4.402155 TCTTTGTTTGGTCTTTGAGCATGT 59.598 37.500 0.24 0.00 39.81 3.21
4004 4895 4.734398 TTGTTTGGTCTTTGAGCATGTT 57.266 36.364 0.24 0.00 39.81 2.71
4005 4896 4.305989 TGTTTGGTCTTTGAGCATGTTC 57.694 40.909 2.05 2.05 39.81 3.18
4006 4897 3.698539 TGTTTGGTCTTTGAGCATGTTCA 59.301 39.130 8.32 8.32 39.81 3.18
4007 4898 3.988379 TTGGTCTTTGAGCATGTTCAC 57.012 42.857 12.23 0.55 39.81 3.18
4008 4899 2.929641 TGGTCTTTGAGCATGTTCACA 58.070 42.857 12.23 4.92 35.04 3.58
4009 4900 3.286353 TGGTCTTTGAGCATGTTCACAA 58.714 40.909 12.23 8.89 35.04 3.33
4010 4901 3.066621 TGGTCTTTGAGCATGTTCACAAC 59.933 43.478 12.23 10.06 35.04 3.32
4011 4902 3.066621 GGTCTTTGAGCATGTTCACAACA 59.933 43.478 12.23 0.00 46.94 3.33
4021 4912 2.653726 TGTTCACAACATTCAGGCTGT 58.346 42.857 15.27 0.00 36.25 4.40
4022 4913 2.618241 TGTTCACAACATTCAGGCTGTC 59.382 45.455 15.27 0.00 36.25 3.51
4023 4914 1.896220 TCACAACATTCAGGCTGTCC 58.104 50.000 15.27 0.00 0.00 4.02
4024 4915 1.142667 TCACAACATTCAGGCTGTCCA 59.857 47.619 15.27 0.03 33.74 4.02
4025 4916 2.165167 CACAACATTCAGGCTGTCCAT 58.835 47.619 15.27 2.63 33.74 3.41
4026 4917 2.559668 CACAACATTCAGGCTGTCCATT 59.440 45.455 15.27 2.85 33.74 3.16
4027 4918 3.006110 CACAACATTCAGGCTGTCCATTT 59.994 43.478 15.27 0.08 33.74 2.32
4028 4919 3.256631 ACAACATTCAGGCTGTCCATTTC 59.743 43.478 15.27 0.00 33.74 2.17
4029 4920 3.159213 ACATTCAGGCTGTCCATTTCA 57.841 42.857 15.27 0.00 33.74 2.69
4030 4921 3.499338 ACATTCAGGCTGTCCATTTCAA 58.501 40.909 15.27 0.00 33.74 2.69
4031 4922 3.256631 ACATTCAGGCTGTCCATTTCAAC 59.743 43.478 15.27 0.00 33.74 3.18
4032 4923 1.909700 TCAGGCTGTCCATTTCAACC 58.090 50.000 15.27 0.00 33.74 3.77
4033 4924 1.425066 TCAGGCTGTCCATTTCAACCT 59.575 47.619 15.27 0.00 32.43 3.50
4034 4925 1.542915 CAGGCTGTCCATTTCAACCTG 59.457 52.381 6.28 0.00 40.92 4.00
4035 4926 0.890683 GGCTGTCCATTTCAACCTGG 59.109 55.000 0.00 0.00 0.00 4.45
4036 4927 1.547675 GGCTGTCCATTTCAACCTGGA 60.548 52.381 0.00 0.00 39.23 3.86
4037 4928 1.815003 GCTGTCCATTTCAACCTGGAG 59.185 52.381 0.00 0.00 42.10 3.86
4038 4929 2.815589 GCTGTCCATTTCAACCTGGAGT 60.816 50.000 0.00 0.00 42.10 3.85
4039 4930 3.490348 CTGTCCATTTCAACCTGGAGTT 58.510 45.455 0.00 0.00 42.10 3.01
4040 4931 3.891366 CTGTCCATTTCAACCTGGAGTTT 59.109 43.478 0.00 0.00 42.10 2.66
4041 4932 3.888930 TGTCCATTTCAACCTGGAGTTTC 59.111 43.478 0.00 0.00 42.10 2.78
4042 4933 4.145052 GTCCATTTCAACCTGGAGTTTCT 58.855 43.478 0.00 0.00 42.10 2.52
4043 4934 4.022849 GTCCATTTCAACCTGGAGTTTCTG 60.023 45.833 0.00 0.00 42.10 3.02
4044 4935 4.141274 TCCATTTCAACCTGGAGTTTCTGA 60.141 41.667 0.00 0.00 36.63 3.27
4045 4936 4.584325 CCATTTCAACCTGGAGTTTCTGAA 59.416 41.667 0.00 0.00 36.18 3.02
4046 4937 5.244626 CCATTTCAACCTGGAGTTTCTGAAT 59.755 40.000 0.00 0.00 36.18 2.57
4047 4938 6.434028 CCATTTCAACCTGGAGTTTCTGAATA 59.566 38.462 0.00 0.00 36.18 1.75
4048 4939 7.123247 CCATTTCAACCTGGAGTTTCTGAATAT 59.877 37.037 0.00 0.00 36.18 1.28
4049 4940 8.526147 CATTTCAACCTGGAGTTTCTGAATATT 58.474 33.333 0.00 0.00 36.18 1.28
4050 4941 9.753674 ATTTCAACCTGGAGTTTCTGAATATTA 57.246 29.630 0.00 0.00 36.18 0.98
4051 4942 9.581289 TTTCAACCTGGAGTTTCTGAATATTAA 57.419 29.630 0.00 0.00 36.18 1.40
4052 4943 8.792830 TCAACCTGGAGTTTCTGAATATTAAG 57.207 34.615 0.00 0.00 36.18 1.85
4053 4944 7.829211 TCAACCTGGAGTTTCTGAATATTAAGG 59.171 37.037 0.00 0.00 36.18 2.69
4054 4945 7.272144 ACCTGGAGTTTCTGAATATTAAGGT 57.728 36.000 0.00 8.11 0.00 3.50
4055 4946 7.339482 ACCTGGAGTTTCTGAATATTAAGGTC 58.661 38.462 0.00 0.00 0.00 3.85
4056 4947 6.768381 CCTGGAGTTTCTGAATATTAAGGTCC 59.232 42.308 0.00 3.10 0.00 4.46
4057 4948 7.265599 TGGAGTTTCTGAATATTAAGGTCCA 57.734 36.000 0.00 5.33 0.00 4.02
4058 4949 7.110155 TGGAGTTTCTGAATATTAAGGTCCAC 58.890 38.462 0.00 0.00 0.00 4.02
4059 4950 6.542735 GGAGTTTCTGAATATTAAGGTCCACC 59.457 42.308 0.00 0.00 0.00 4.61
4060 4951 7.027874 AGTTTCTGAATATTAAGGTCCACCA 57.972 36.000 0.00 0.00 38.89 4.17
4061 4952 7.466804 AGTTTCTGAATATTAAGGTCCACCAA 58.533 34.615 0.00 0.00 38.89 3.67
4062 4953 7.393515 AGTTTCTGAATATTAAGGTCCACCAAC 59.606 37.037 0.00 0.00 38.89 3.77
4063 4954 6.381498 TCTGAATATTAAGGTCCACCAACA 57.619 37.500 0.00 0.00 38.89 3.33
4064 4955 6.177610 TCTGAATATTAAGGTCCACCAACAC 58.822 40.000 0.00 0.00 38.89 3.32
4065 4956 5.258051 TGAATATTAAGGTCCACCAACACC 58.742 41.667 0.00 0.00 38.89 4.16
4066 4957 5.014755 TGAATATTAAGGTCCACCAACACCT 59.985 40.000 0.00 0.00 45.59 4.00
4073 4964 5.530176 AGGTCCACCAACACCTTAATATT 57.470 39.130 0.00 0.00 40.35 1.28
4074 4965 6.645884 AGGTCCACCAACACCTTAATATTA 57.354 37.500 0.00 0.00 40.35 0.98
4075 4966 7.034967 AGGTCCACCAACACCTTAATATTAA 57.965 36.000 7.66 7.66 40.35 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.153330 TACTCCTCTCCCCGGGCC 62.153 72.222 17.73 0.00 0.00 5.80
20 21 2.522193 CTACTCCTCTCCCCGGGC 60.522 72.222 17.73 0.00 0.00 6.13
21 22 2.198980 CCTACTCCTCTCCCCGGG 59.801 72.222 15.80 15.80 0.00 5.73
22 23 2.522193 GCCTACTCCTCTCCCCGG 60.522 72.222 0.00 0.00 0.00 5.73
24 25 3.228017 GCGCCTACTCCTCTCCCC 61.228 72.222 0.00 0.00 0.00 4.81
26 27 2.809010 GTGCGCCTACTCCTCTCC 59.191 66.667 4.18 0.00 0.00 3.71
27 28 2.409651 CGTGCGCCTACTCCTCTC 59.590 66.667 4.18 0.00 0.00 3.20
28 29 3.141488 CCGTGCGCCTACTCCTCT 61.141 66.667 4.18 0.00 0.00 3.69
41 42 3.553437 AACGAGACAGACGCCCGTG 62.553 63.158 0.00 0.00 33.48 4.94
43 44 2.049433 AAACGAGACAGACGCCCG 60.049 61.111 0.00 0.00 0.00 6.13
44 45 1.737008 GGAAACGAGACAGACGCCC 60.737 63.158 0.00 0.00 0.00 6.13
45 46 3.857909 GGAAACGAGACAGACGCC 58.142 61.111 0.00 0.00 0.00 5.68
65 66 1.079875 TTAGTCGGATTTGCGTCGGC 61.080 55.000 0.00 0.00 40.52 5.54
66 67 1.352114 TTTAGTCGGATTTGCGTCGG 58.648 50.000 0.00 0.00 0.00 4.79
67 68 3.443054 TTTTTAGTCGGATTTGCGTCG 57.557 42.857 0.00 0.00 0.00 5.12
84 85 2.560981 GACCCATTCCCGACACATTTTT 59.439 45.455 0.00 0.00 0.00 1.94
85 86 2.167662 GACCCATTCCCGACACATTTT 58.832 47.619 0.00 0.00 0.00 1.82
86 87 1.834188 GACCCATTCCCGACACATTT 58.166 50.000 0.00 0.00 0.00 2.32
87 88 0.392461 CGACCCATTCCCGACACATT 60.392 55.000 0.00 0.00 0.00 2.71
88 89 1.220749 CGACCCATTCCCGACACAT 59.779 57.895 0.00 0.00 0.00 3.21
89 90 2.660206 CGACCCATTCCCGACACA 59.340 61.111 0.00 0.00 0.00 3.72
92 93 3.400599 ATGCCGACCCATTCCCGAC 62.401 63.158 0.00 0.00 0.00 4.79
94 95 2.901840 CATGCCGACCCATTCCCG 60.902 66.667 0.00 0.00 0.00 5.14
95 96 3.219198 GCATGCCGACCCATTCCC 61.219 66.667 6.36 0.00 0.00 3.97
96 97 3.585990 CGCATGCCGACCCATTCC 61.586 66.667 13.15 0.00 40.02 3.01
97 98 3.585990 CCGCATGCCGACCCATTC 61.586 66.667 13.15 0.00 40.02 2.67
98 99 4.108299 TCCGCATGCCGACCCATT 62.108 61.111 13.15 0.00 40.02 3.16
99 100 4.856801 GTCCGCATGCCGACCCAT 62.857 66.667 23.56 0.00 40.02 4.00
122 123 4.349871 AAACGAACGCGCGTCTGC 62.350 61.111 37.77 25.70 44.86 4.26
123 124 2.494728 CAAACGAACGCGCGTCTG 60.495 61.111 37.77 31.13 44.86 3.51
124 125 3.698463 CCAAACGAACGCGCGTCT 61.698 61.111 37.77 25.33 44.86 4.18
125 126 4.712873 CCCAAACGAACGCGCGTC 62.713 66.667 37.77 26.32 44.86 5.19
129 130 4.067016 CCGACCCAAACGAACGCG 62.067 66.667 3.53 3.53 44.79 6.01
131 132 4.067016 CGCCGACCCAAACGAACG 62.067 66.667 0.00 0.00 0.00 3.95
132 133 2.050639 AAACGCCGACCCAAACGAAC 62.051 55.000 0.00 0.00 0.00 3.95
133 134 1.818785 AAACGCCGACCCAAACGAA 60.819 52.632 0.00 0.00 0.00 3.85
134 135 2.203042 AAACGCCGACCCAAACGA 60.203 55.556 0.00 0.00 0.00 3.85
135 136 2.051703 CAAACGCCGACCCAAACG 60.052 61.111 0.00 0.00 0.00 3.60
137 138 3.597728 GCCAAACGCCGACCCAAA 61.598 61.111 0.00 0.00 0.00 3.28
146 147 1.065109 ACAAAAGACGGCCAAACGC 59.935 52.632 2.24 0.00 37.37 4.84
150 151 1.440938 CGGACACAAAAGACGGCCAA 61.441 55.000 2.24 0.00 0.00 4.52
151 152 1.890041 CGGACACAAAAGACGGCCA 60.890 57.895 2.24 0.00 0.00 5.36
152 153 2.943653 CGGACACAAAAGACGGCC 59.056 61.111 0.00 0.00 0.00 6.13
153 154 2.251371 GCGGACACAAAAGACGGC 59.749 61.111 0.00 0.00 0.00 5.68
155 156 2.127758 GCGCGGACACAAAAGACG 60.128 61.111 8.83 0.00 0.00 4.18
157 158 3.342627 CGGCGCGGACACAAAAGA 61.343 61.111 9.72 0.00 0.00 2.52
158 159 3.342627 TCGGCGCGGACACAAAAG 61.343 61.111 14.27 0.00 0.00 2.27
184 185 3.428282 ATTTTGTCCGCCGGCGTC 61.428 61.111 43.12 34.09 37.81 5.19
185 186 3.732892 CATTTTGTCCGCCGGCGT 61.733 61.111 43.12 23.69 37.81 5.68
186 187 4.474846 CCATTTTGTCCGCCGGCG 62.475 66.667 41.00 41.00 39.44 6.46
187 188 4.128388 CCCATTTTGTCCGCCGGC 62.128 66.667 19.07 19.07 0.00 6.13
188 189 2.675075 ACCCATTTTGTCCGCCGG 60.675 61.111 0.00 0.00 0.00 6.13
190 191 2.874751 CGACCCATTTTGTCCGCC 59.125 61.111 0.00 0.00 0.00 6.13
192 193 2.874751 GGCGACCCATTTTGTCCG 59.125 61.111 0.00 0.00 0.00 4.79
204 205 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
207 208 3.056328 GAGCAACTCCAACGGGGC 61.056 66.667 0.00 0.00 36.21 5.80
208 209 0.323629 TAAGAGCAACTCCAACGGGG 59.676 55.000 0.00 0.00 38.37 5.73
209 210 1.002087 ACTAAGAGCAACTCCAACGGG 59.998 52.381 0.00 0.00 0.00 5.28
210 211 2.457366 ACTAAGAGCAACTCCAACGG 57.543 50.000 0.00 0.00 0.00 4.44
211 212 3.251571 GGTACTAAGAGCAACTCCAACG 58.748 50.000 0.00 0.00 0.00 4.10
212 213 3.251571 CGGTACTAAGAGCAACTCCAAC 58.748 50.000 0.00 0.00 0.00 3.77
213 214 2.895404 ACGGTACTAAGAGCAACTCCAA 59.105 45.455 0.00 0.00 0.00 3.53
214 215 2.230508 CACGGTACTAAGAGCAACTCCA 59.769 50.000 0.00 0.00 0.00 3.86
215 216 2.230750 ACACGGTACTAAGAGCAACTCC 59.769 50.000 0.00 0.00 0.00 3.85
217 218 4.332428 AAACACGGTACTAAGAGCAACT 57.668 40.909 0.00 0.00 0.00 3.16
218 219 5.464168 TCTAAACACGGTACTAAGAGCAAC 58.536 41.667 0.00 0.00 0.00 4.17
219 220 5.710513 TCTAAACACGGTACTAAGAGCAA 57.289 39.130 0.00 0.00 0.00 3.91
220 221 5.710513 TTCTAAACACGGTACTAAGAGCA 57.289 39.130 0.00 0.00 0.00 4.26
221 222 7.412137 TTTTTCTAAACACGGTACTAAGAGC 57.588 36.000 0.00 0.00 0.00 4.09
244 245 4.201970 ACGATGTCACCGTGTTTGATTTTT 60.202 37.500 0.00 0.00 38.97 1.94
245 246 3.314080 ACGATGTCACCGTGTTTGATTTT 59.686 39.130 0.00 0.00 38.97 1.82
246 247 2.875933 ACGATGTCACCGTGTTTGATTT 59.124 40.909 0.00 0.00 38.97 2.17
247 248 2.489971 ACGATGTCACCGTGTTTGATT 58.510 42.857 0.00 0.00 38.97 2.57
249 250 3.671262 ACGATGTCACCGTGTTTGA 57.329 47.368 0.00 0.00 38.97 2.69
255 256 0.039437 GTCAGTCACGATGTCACCGT 60.039 55.000 0.00 0.00 41.36 4.83
257 258 2.488545 ACTAGTCAGTCACGATGTCACC 59.511 50.000 0.00 0.00 0.00 4.02
258 259 3.493272 CACTAGTCAGTCACGATGTCAC 58.507 50.000 0.00 0.00 30.46 3.67
259 260 2.488153 CCACTAGTCAGTCACGATGTCA 59.512 50.000 0.00 0.00 30.46 3.58
260 261 2.732597 GCCACTAGTCAGTCACGATGTC 60.733 54.545 0.00 0.00 30.46 3.06
262 263 1.795525 CGCCACTAGTCAGTCACGATG 60.796 57.143 0.00 0.00 33.82 3.84
263 264 0.452184 CGCCACTAGTCAGTCACGAT 59.548 55.000 0.00 0.00 33.82 3.73
264 265 1.583495 CCGCCACTAGTCAGTCACGA 61.583 60.000 0.00 0.00 33.82 4.35
265 266 1.154016 CCGCCACTAGTCAGTCACG 60.154 63.158 0.00 0.00 30.46 4.35
266 267 0.388649 CACCGCCACTAGTCAGTCAC 60.389 60.000 0.00 0.00 30.46 3.67
276 277 0.107116 TTTGTTGTACCACCGCCACT 60.107 50.000 0.00 0.00 0.00 4.00
307 308 6.713276 TCGTCAGTATATTTTTCAAAGGGGA 58.287 36.000 0.00 0.00 0.00 4.81
308 309 6.038271 CCTCGTCAGTATATTTTTCAAAGGGG 59.962 42.308 0.00 0.00 0.00 4.79
309 310 6.821665 TCCTCGTCAGTATATTTTTCAAAGGG 59.178 38.462 0.00 0.00 0.00 3.95
310 311 7.464178 CGTCCTCGTCAGTATATTTTTCAAAGG 60.464 40.741 0.00 0.00 0.00 3.11
312 313 7.285783 CGTCCTCGTCAGTATATTTTTCAAA 57.714 36.000 0.00 0.00 0.00 2.69
313 314 6.880822 CGTCCTCGTCAGTATATTTTTCAA 57.119 37.500 0.00 0.00 0.00 2.69
401 1067 3.721706 GTGGGGGAGCAGACAGGG 61.722 72.222 0.00 0.00 0.00 4.45
500 1191 2.835431 CCGGGAGCTCGTGAGGAT 60.835 66.667 7.83 0.00 0.00 3.24
608 1315 2.439156 AAAGCAGATGGCCGCTCC 60.439 61.111 3.15 0.00 46.50 4.70
610 1317 2.821366 CGAAAGCAGATGGCCGCT 60.821 61.111 0.00 0.00 46.50 5.52
711 1418 2.100605 AGATGACCAAACCGAAGCTC 57.899 50.000 0.00 0.00 0.00 4.09
726 1444 1.811266 CGGACCAGGCACGAAGATG 60.811 63.158 0.00 0.00 0.00 2.90
768 1486 2.104729 CAAATCCGGGCCAATGCG 59.895 61.111 4.39 0.00 38.85 4.73
791 1509 4.210331 ACAGTGAACTTTGCAGGAAAGAT 58.790 39.130 20.40 9.15 43.50 2.40
848 1566 4.052229 ACGGTGGAGACGCGGAAG 62.052 66.667 12.47 0.00 43.17 3.46
849 1567 4.351938 CACGGTGGAGACGCGGAA 62.352 66.667 12.47 0.00 43.17 4.30
853 1571 2.758770 TTAGCACACGGTGGAGACGC 62.759 60.000 13.48 6.84 41.20 5.19
854 1572 1.007336 GTTAGCACACGGTGGAGACG 61.007 60.000 13.48 0.00 33.64 4.18
855 1573 0.669625 GGTTAGCACACGGTGGAGAC 60.670 60.000 13.48 3.83 33.64 3.36
856 1574 1.669440 GGTTAGCACACGGTGGAGA 59.331 57.895 13.48 0.00 33.64 3.71
857 1575 1.375523 GGGTTAGCACACGGTGGAG 60.376 63.158 13.48 5.80 33.64 3.86
858 1576 1.412453 AAGGGTTAGCACACGGTGGA 61.412 55.000 13.48 0.00 33.64 4.02
859 1577 0.953960 GAAGGGTTAGCACACGGTGG 60.954 60.000 13.48 2.76 33.64 4.61
860 1578 0.034896 AGAAGGGTTAGCACACGGTG 59.965 55.000 6.58 6.58 36.51 4.94
861 1579 0.320697 GAGAAGGGTTAGCACACGGT 59.679 55.000 0.00 0.00 0.00 4.83
862 1580 0.391263 GGAGAAGGGTTAGCACACGG 60.391 60.000 0.00 0.00 0.00 4.94
863 1581 0.391263 GGGAGAAGGGTTAGCACACG 60.391 60.000 0.00 0.00 0.00 4.49
864 1582 0.984995 AGGGAGAAGGGTTAGCACAC 59.015 55.000 0.00 0.00 0.00 3.82
865 1583 1.203313 AGAGGGAGAAGGGTTAGCACA 60.203 52.381 0.00 0.00 0.00 4.57
866 1584 1.483004 GAGAGGGAGAAGGGTTAGCAC 59.517 57.143 0.00 0.00 0.00 4.40
867 1585 1.622725 GGAGAGGGAGAAGGGTTAGCA 60.623 57.143 0.00 0.00 0.00 3.49
868 1586 1.124780 GGAGAGGGAGAAGGGTTAGC 58.875 60.000 0.00 0.00 0.00 3.09
876 1594 0.326264 GCAAAGCAGGAGAGGGAGAA 59.674 55.000 0.00 0.00 0.00 2.87
902 1620 1.449956 GGAGCAGAGCAGAGCCTTG 60.450 63.158 0.00 0.00 0.00 3.61
914 1632 2.438075 GCAGAGCCTTGGGAGCAG 60.438 66.667 0.00 0.00 0.00 4.24
915 1633 2.932194 AGCAGAGCCTTGGGAGCA 60.932 61.111 0.00 0.00 0.00 4.26
916 1634 2.438075 CAGCAGAGCCTTGGGAGC 60.438 66.667 0.00 0.00 0.00 4.70
917 1635 2.438075 GCAGCAGAGCCTTGGGAG 60.438 66.667 0.00 0.00 0.00 4.30
918 1636 4.399395 CGCAGCAGAGCCTTGGGA 62.399 66.667 0.00 0.00 0.00 4.37
928 1646 4.838152 ATGGTACGGCCGCAGCAG 62.838 66.667 31.46 3.83 42.56 4.24
992 1710 1.271597 ACTGCTTCCACATCTTGGTCC 60.272 52.381 0.00 0.00 46.97 4.46
1224 1942 3.056328 GGCACGTCCTTGAAGGCC 61.056 66.667 6.30 0.00 34.61 5.19
1545 2269 3.663202 TCGTACACGAGCTGCAGA 58.337 55.556 20.43 0.00 44.22 4.26
1642 2366 2.125350 GAGGAGGTTGAGCAGCCG 60.125 66.667 0.00 0.00 36.74 5.52
1758 2482 6.072508 ACACAAAGTGGTAGAATATGTTGCTG 60.073 38.462 1.93 0.00 37.94 4.41
1779 2503 2.338620 CGCTGGGTCTCGAACACA 59.661 61.111 3.29 3.29 39.62 3.72
1869 2593 5.765182 TCTCCAAAGAAAGATCTTGTGTTCC 59.235 40.000 9.17 0.00 45.19 3.62
1887 2611 3.055530 GCAGAGGAATGAGAACTCTCCAA 60.056 47.826 4.30 0.00 42.20 3.53
1899 2623 0.674581 TCGGCTTGTGCAGAGGAATG 60.675 55.000 0.00 0.00 38.41 2.67
2130 2854 2.028190 CACTGAGCTATCCGCCGG 59.972 66.667 0.00 0.00 40.39 6.13
2160 2884 1.774856 AGGCAAGTTACCTGGAAGTGT 59.225 47.619 0.00 0.00 35.72 3.55
2199 2923 6.542821 ACATTGGAGAACTCAGAATTACCAA 58.457 36.000 0.00 0.00 39.79 3.67
2200 2924 6.126863 ACATTGGAGAACTCAGAATTACCA 57.873 37.500 4.23 0.00 0.00 3.25
2217 2941 5.531634 ACAATACTGCAACAAGAACATTGG 58.468 37.500 0.00 0.00 0.00 3.16
2231 2955 8.765219 CAAGTATAGTACATCCAACAATACTGC 58.235 37.037 0.00 0.00 31.06 4.40
2238 2962 7.333423 GCAGAAACAAGTATAGTACATCCAACA 59.667 37.037 0.00 0.00 0.00 3.33
2239 2963 7.201617 GGCAGAAACAAGTATAGTACATCCAAC 60.202 40.741 0.00 0.00 0.00 3.77
2240 2964 6.821665 GGCAGAAACAAGTATAGTACATCCAA 59.178 38.462 0.00 0.00 0.00 3.53
2243 2967 7.042335 AGTGGCAGAAACAAGTATAGTACATC 58.958 38.462 0.00 0.00 0.00 3.06
2245 2969 6.354794 AGTGGCAGAAACAAGTATAGTACA 57.645 37.500 0.00 0.00 0.00 2.90
2246 2970 8.767478 TTAAGTGGCAGAAACAAGTATAGTAC 57.233 34.615 0.00 0.00 0.00 2.73
2248 2972 7.937394 AGTTTAAGTGGCAGAAACAAGTATAGT 59.063 33.333 17.13 0.00 35.88 2.12
2313 3086 5.766670 TGATGCAAACTTCTTCAGACTTCAT 59.233 36.000 0.00 0.00 0.00 2.57
2331 3104 3.284617 CCCATTCTGATTGAGTGATGCA 58.715 45.455 0.00 0.00 34.77 3.96
2374 3147 2.905415 TTGGGGACTGCTTGATCAAT 57.095 45.000 8.96 0.00 0.00 2.57
2385 3158 2.785389 TTGGGGCCTTTGGGGACT 60.785 61.111 0.84 0.00 44.42 3.85
2397 3170 5.170748 CAAAAATAAGCTTAGCTGTTGGGG 58.829 41.667 7.77 0.00 39.62 4.96
2398 3171 5.170748 CCAAAAATAAGCTTAGCTGTTGGG 58.829 41.667 22.19 12.96 39.62 4.12
2400 3173 5.863935 GGACCAAAAATAAGCTTAGCTGTTG 59.136 40.000 7.77 12.06 39.62 3.33
2409 3182 3.825908 TGGAGGGACCAAAAATAAGCT 57.174 42.857 0.00 0.00 46.75 3.74
2432 3210 4.877823 TCACAAATATGAGACACATGGAGC 59.122 41.667 0.00 0.00 39.77 4.70
2433 3211 7.563888 AATCACAAATATGAGACACATGGAG 57.436 36.000 0.00 0.00 39.77 3.86
2434 3212 8.485392 TCTAATCACAAATATGAGACACATGGA 58.515 33.333 0.00 0.00 39.77 3.41
2435 3213 8.667076 TCTAATCACAAATATGAGACACATGG 57.333 34.615 0.00 0.00 39.77 3.66
2438 3216 9.671279 ACATTCTAATCACAAATATGAGACACA 57.329 29.630 0.00 0.00 30.46 3.72
2439 3217 9.926751 CACATTCTAATCACAAATATGAGACAC 57.073 33.333 0.00 0.00 30.46 3.67
2440 3218 9.671279 ACACATTCTAATCACAAATATGAGACA 57.329 29.630 0.00 0.00 30.46 3.41
2441 3219 9.926751 CACACATTCTAATCACAAATATGAGAC 57.073 33.333 0.00 0.00 30.46 3.36
2442 3220 9.112725 CCACACATTCTAATCACAAATATGAGA 57.887 33.333 0.00 0.00 30.46 3.27
2475 3253 5.618056 TTCAGACATCTGTTGCTCATTTC 57.382 39.130 8.70 0.00 44.12 2.17
2503 3288 8.539674 GTTGTCCATTTGTCAACATTAACTTTC 58.460 33.333 0.00 0.00 40.44 2.62
2578 3369 8.438513 CAAGTGTCGGCTATTCATGATATTAAG 58.561 37.037 0.00 0.00 0.00 1.85
2644 3435 9.530633 CTAATAAGTGACTAACAGACCATAACC 57.469 37.037 0.00 0.00 0.00 2.85
2660 3451 6.349280 GCAAATGTGAGCCAACTAATAAGTGA 60.349 38.462 0.00 0.00 35.62 3.41
2661 3452 5.801947 GCAAATGTGAGCCAACTAATAAGTG 59.198 40.000 0.00 0.00 35.62 3.16
2664 3455 5.945784 AGAGCAAATGTGAGCCAACTAATAA 59.054 36.000 0.00 0.00 0.00 1.40
2665 3456 5.355071 CAGAGCAAATGTGAGCCAACTAATA 59.645 40.000 0.00 0.00 0.00 0.98
2666 3457 4.157289 CAGAGCAAATGTGAGCCAACTAAT 59.843 41.667 0.00 0.00 0.00 1.73
2682 3473 9.859427 CCATTTGTAATAGAAAATTCAGAGCAA 57.141 29.630 0.00 0.00 0.00 3.91
2778 3573 0.750546 CCACCAGGCTGATGATGTGG 60.751 60.000 20.49 20.49 37.51 4.17
2931 3726 2.098831 GGTTAGGCACGCCGAGAAC 61.099 63.158 1.61 8.45 41.95 3.01
2949 3744 1.280133 TCCTCATCCTCCTTGCACTTG 59.720 52.381 0.00 0.00 0.00 3.16
2964 3759 1.301401 CGACGCCTGGTTTTCCTCA 60.301 57.895 0.00 0.00 41.38 3.86
2983 3778 1.194781 AGCCTCCGCTTCTCTTCCAA 61.195 55.000 0.00 0.00 45.55 3.53
2988 3783 0.902516 ACTTCAGCCTCCGCTTCTCT 60.903 55.000 0.00 0.00 45.55 3.10
3197 3992 1.755393 AAACGACGAGCCCTGGAGTT 61.755 55.000 0.00 0.00 0.00 3.01
3244 4039 5.953571 TCTAGAGCATTAGACATAGTGGGA 58.046 41.667 0.00 0.00 0.00 4.37
3257 4052 4.578105 GCTACATTTTGCCTCTAGAGCATT 59.422 41.667 14.73 2.54 40.59 3.56
3300 4096 2.575694 ACAGCTAATGAGTCTCAGCG 57.424 50.000 8.82 5.94 39.04 5.18
3315 4111 8.647226 CATAAAATAAACAGGCAAAGTTACAGC 58.353 33.333 0.00 0.00 0.00 4.40
3405 4201 3.230743 TCAGAATGAAATCGTGCTCGA 57.769 42.857 13.84 13.84 45.97 4.04
3419 4215 2.818432 CAAAGCCTCAGCACTTCAGAAT 59.182 45.455 0.00 0.00 43.56 2.40
3427 4223 3.375782 AAACAATCAAAGCCTCAGCAC 57.624 42.857 0.00 0.00 43.56 4.40
3430 4226 7.225145 TCAAATTCAAAACAATCAAAGCCTCAG 59.775 33.333 0.00 0.00 0.00 3.35
3433 4229 7.011669 CAGTCAAATTCAAAACAATCAAAGCCT 59.988 33.333 0.00 0.00 0.00 4.58
3463 4264 5.413309 AGTTTTGTTTTCCACATGGTCAA 57.587 34.783 0.00 0.00 34.43 3.18
3516 4318 9.860650 AATCTATACAACAATTACAATGCCCTA 57.139 29.630 0.00 0.00 0.00 3.53
3545 4347 9.453572 ACAGAGCTAATTCATTTTATTGTCTGA 57.546 29.630 0.00 0.00 0.00 3.27
3616 4500 8.495148 TCTCTTTTTCTTTTGCAAGTTTTGTTC 58.505 29.630 0.00 0.00 0.00 3.18
3639 4523 4.806342 TTTGCAAACCTACGTCTTTCTC 57.194 40.909 8.05 0.00 0.00 2.87
3764 4650 7.161404 CCGATGGGTTCTTCATCTGAATAATA 58.839 38.462 0.00 0.00 38.95 0.98
3766 4652 5.368145 CCGATGGGTTCTTCATCTGAATAA 58.632 41.667 0.00 0.00 38.95 1.40
3767 4653 4.743651 GCCGATGGGTTCTTCATCTGAATA 60.744 45.833 0.00 0.00 38.95 1.75
3768 4654 3.813443 CCGATGGGTTCTTCATCTGAAT 58.187 45.455 0.00 0.00 38.95 2.57
3771 4657 1.303309 GCCGATGGGTTCTTCATCTG 58.697 55.000 0.00 0.00 38.95 2.90
3772 4658 0.911769 TGCCGATGGGTTCTTCATCT 59.088 50.000 0.00 0.00 38.95 2.90
3773 4659 1.750193 TTGCCGATGGGTTCTTCATC 58.250 50.000 0.00 0.00 38.04 2.92
3776 4662 3.592898 AATTTTGCCGATGGGTTCTTC 57.407 42.857 0.00 0.00 34.97 2.87
3791 4682 9.598517 TCTGTTGTTTGCTTGATTCTTAATTTT 57.401 25.926 0.00 0.00 0.00 1.82
3805 4696 1.670811 CACGGTCTTCTGTTGTTTGCT 59.329 47.619 0.00 0.00 0.00 3.91
3822 4713 2.058057 CCCTTTTTCATTTTCCGCACG 58.942 47.619 0.00 0.00 0.00 5.34
3826 4717 4.282449 ACCCTTACCCTTTTTCATTTTCCG 59.718 41.667 0.00 0.00 0.00 4.30
3840 4731 5.771165 TGTAATTTCTGTTGAACCCTTACCC 59.229 40.000 0.00 0.00 31.02 3.69
3842 4733 9.758651 AAATTGTAATTTCTGTTGAACCCTTAC 57.241 29.630 0.00 0.00 33.54 2.34
3856 4747 9.213799 TGGAAATAACTGGCAAATTGTAATTTC 57.786 29.630 0.00 0.00 36.52 2.17
3859 4750 7.180051 TCCTGGAAATAACTGGCAAATTGTAAT 59.820 33.333 0.00 0.00 0.00 1.89
3907 4798 9.620660 GTTTGAGTGTGAGTTTAAAAGAAAAGA 57.379 29.630 0.00 0.00 0.00 2.52
3908 4799 9.626045 AGTTTGAGTGTGAGTTTAAAAGAAAAG 57.374 29.630 0.00 0.00 0.00 2.27
3909 4800 9.974980 AAGTTTGAGTGTGAGTTTAAAAGAAAA 57.025 25.926 0.00 0.00 0.00 2.29
3910 4801 9.974980 AAAGTTTGAGTGTGAGTTTAAAAGAAA 57.025 25.926 0.00 0.00 0.00 2.52
3941 4832 9.764363 GAACCAAATCCTTTCTCTTGTTTAAAT 57.236 29.630 0.00 0.00 0.00 1.40
3942 4833 8.754080 TGAACCAAATCCTTTCTCTTGTTTAAA 58.246 29.630 0.00 0.00 0.00 1.52
3943 4834 8.299990 TGAACCAAATCCTTTCTCTTGTTTAA 57.700 30.769 0.00 0.00 0.00 1.52
3944 4835 7.889873 TGAACCAAATCCTTTCTCTTGTTTA 57.110 32.000 0.00 0.00 0.00 2.01
3945 4836 6.790232 TGAACCAAATCCTTTCTCTTGTTT 57.210 33.333 0.00 0.00 0.00 2.83
3946 4837 6.607198 TCTTGAACCAAATCCTTTCTCTTGTT 59.393 34.615 0.00 0.00 0.00 2.83
3947 4838 6.129179 TCTTGAACCAAATCCTTTCTCTTGT 58.871 36.000 0.00 0.00 0.00 3.16
3948 4839 6.639632 TCTTGAACCAAATCCTTTCTCTTG 57.360 37.500 0.00 0.00 0.00 3.02
3949 4840 7.062957 TCTTCTTGAACCAAATCCTTTCTCTT 58.937 34.615 0.00 0.00 0.00 2.85
3950 4841 6.605119 TCTTCTTGAACCAAATCCTTTCTCT 58.395 36.000 0.00 0.00 0.00 3.10
3951 4842 6.884280 TCTTCTTGAACCAAATCCTTTCTC 57.116 37.500 0.00 0.00 0.00 2.87
3952 4843 7.201947 CCTTTCTTCTTGAACCAAATCCTTTCT 60.202 37.037 0.00 0.00 33.88 2.52
3953 4844 6.925718 CCTTTCTTCTTGAACCAAATCCTTTC 59.074 38.462 0.00 0.00 33.88 2.62
3954 4845 6.384015 ACCTTTCTTCTTGAACCAAATCCTTT 59.616 34.615 0.00 0.00 33.88 3.11
3955 4846 5.899547 ACCTTTCTTCTTGAACCAAATCCTT 59.100 36.000 0.00 0.00 33.88 3.36
3956 4847 5.458595 ACCTTTCTTCTTGAACCAAATCCT 58.541 37.500 0.00 0.00 33.88 3.24
3957 4848 5.791336 ACCTTTCTTCTTGAACCAAATCC 57.209 39.130 0.00 0.00 33.88 3.01
3958 4849 7.043961 AGAACCTTTCTTCTTGAACCAAATC 57.956 36.000 0.00 0.00 36.36 2.17
3959 4850 7.423844 AAGAACCTTTCTTCTTGAACCAAAT 57.576 32.000 0.00 0.00 46.62 2.32
3960 4851 6.850752 AAGAACCTTTCTTCTTGAACCAAA 57.149 33.333 0.00 0.00 46.62 3.28
3972 4863 6.210584 TCAAAGACCAAACAAAGAACCTTTCT 59.789 34.615 0.00 0.00 43.15 2.52
3973 4864 6.394809 TCAAAGACCAAACAAAGAACCTTTC 58.605 36.000 0.00 0.00 0.00 2.62
3974 4865 6.353404 TCAAAGACCAAACAAAGAACCTTT 57.647 33.333 0.00 0.00 0.00 3.11
3975 4866 5.624509 GCTCAAAGACCAAACAAAGAACCTT 60.625 40.000 0.00 0.00 0.00 3.50
3976 4867 4.142160 GCTCAAAGACCAAACAAAGAACCT 60.142 41.667 0.00 0.00 0.00 3.50
3977 4868 4.112634 GCTCAAAGACCAAACAAAGAACC 58.887 43.478 0.00 0.00 0.00 3.62
3978 4869 4.743493 TGCTCAAAGACCAAACAAAGAAC 58.257 39.130 0.00 0.00 0.00 3.01
3979 4870 5.105392 ACATGCTCAAAGACCAAACAAAGAA 60.105 36.000 0.00 0.00 0.00 2.52
3980 4871 4.402155 ACATGCTCAAAGACCAAACAAAGA 59.598 37.500 0.00 0.00 0.00 2.52
3981 4872 4.685924 ACATGCTCAAAGACCAAACAAAG 58.314 39.130 0.00 0.00 0.00 2.77
3982 4873 4.734398 ACATGCTCAAAGACCAAACAAA 57.266 36.364 0.00 0.00 0.00 2.83
3983 4874 4.159321 TGAACATGCTCAAAGACCAAACAA 59.841 37.500 0.00 0.00 0.00 2.83
3984 4875 3.698539 TGAACATGCTCAAAGACCAAACA 59.301 39.130 0.00 0.00 0.00 2.83
3985 4876 4.044426 GTGAACATGCTCAAAGACCAAAC 58.956 43.478 0.00 0.00 0.00 2.93
3986 4877 3.698539 TGTGAACATGCTCAAAGACCAAA 59.301 39.130 0.00 0.00 0.00 3.28
3987 4878 3.286353 TGTGAACATGCTCAAAGACCAA 58.714 40.909 0.00 0.00 0.00 3.67
3988 4879 2.929641 TGTGAACATGCTCAAAGACCA 58.070 42.857 0.00 0.00 0.00 4.02
3989 4880 3.066621 TGTTGTGAACATGCTCAAAGACC 59.933 43.478 0.00 0.00 36.25 3.85
3990 4881 4.291540 TGTTGTGAACATGCTCAAAGAC 57.708 40.909 0.00 1.25 36.25 3.01
4001 4892 2.618241 GACAGCCTGAATGTTGTGAACA 59.382 45.455 0.00 0.00 46.94 3.18
4002 4893 2.030805 GGACAGCCTGAATGTTGTGAAC 60.031 50.000 0.00 0.00 0.00 3.18
4003 4894 2.229792 GGACAGCCTGAATGTTGTGAA 58.770 47.619 0.00 0.00 0.00 3.18
4004 4895 1.142667 TGGACAGCCTGAATGTTGTGA 59.857 47.619 0.00 0.00 34.31 3.58
4005 4896 1.608055 TGGACAGCCTGAATGTTGTG 58.392 50.000 0.00 0.00 34.31 3.33
4006 4897 2.592102 ATGGACAGCCTGAATGTTGT 57.408 45.000 0.00 0.00 34.31 3.32
4007 4898 3.256383 TGAAATGGACAGCCTGAATGTTG 59.744 43.478 0.00 0.00 34.31 3.33
4008 4899 3.499338 TGAAATGGACAGCCTGAATGTT 58.501 40.909 0.00 0.00 34.31 2.71
4009 4900 3.159213 TGAAATGGACAGCCTGAATGT 57.841 42.857 0.00 0.00 34.31 2.71
4010 4901 3.367703 GGTTGAAATGGACAGCCTGAATG 60.368 47.826 0.00 0.00 36.09 2.67
4011 4902 2.827921 GGTTGAAATGGACAGCCTGAAT 59.172 45.455 0.00 0.00 36.09 2.57
4012 4903 2.158475 AGGTTGAAATGGACAGCCTGAA 60.158 45.455 0.00 0.00 44.78 3.02
4013 4904 1.425066 AGGTTGAAATGGACAGCCTGA 59.575 47.619 0.00 0.00 44.78 3.86
4014 4905 1.915141 AGGTTGAAATGGACAGCCTG 58.085 50.000 0.00 0.00 44.78 4.85
4015 4906 1.548582 CCAGGTTGAAATGGACAGCCT 60.549 52.381 0.00 0.00 46.77 4.58
4016 4907 0.890683 CCAGGTTGAAATGGACAGCC 59.109 55.000 0.00 0.00 39.02 4.85
4017 4908 1.815003 CTCCAGGTTGAAATGGACAGC 59.185 52.381 0.00 0.00 40.70 4.40
4018 4909 3.146104 ACTCCAGGTTGAAATGGACAG 57.854 47.619 0.00 0.00 40.70 3.51
4019 4910 3.593442 AACTCCAGGTTGAAATGGACA 57.407 42.857 0.00 0.00 40.70 4.02
4020 4911 4.022849 CAGAAACTCCAGGTTGAAATGGAC 60.023 45.833 0.00 0.00 40.70 4.02
4021 4912 4.141274 TCAGAAACTCCAGGTTGAAATGGA 60.141 41.667 1.05 1.05 43.34 3.41
4022 4913 4.144297 TCAGAAACTCCAGGTTGAAATGG 58.856 43.478 0.00 0.00 38.29 3.16
4023 4914 5.772825 TTCAGAAACTCCAGGTTGAAATG 57.227 39.130 0.00 0.00 38.29 2.32
4024 4915 8.655935 AATATTCAGAAACTCCAGGTTGAAAT 57.344 30.769 0.00 0.00 38.29 2.17
4025 4916 9.581289 TTAATATTCAGAAACTCCAGGTTGAAA 57.419 29.630 0.00 0.00 38.29 2.69
4026 4917 9.231297 CTTAATATTCAGAAACTCCAGGTTGAA 57.769 33.333 0.00 0.00 38.29 2.69
4027 4918 7.829211 CCTTAATATTCAGAAACTCCAGGTTGA 59.171 37.037 0.00 0.00 38.29 3.18
4028 4919 7.611855 ACCTTAATATTCAGAAACTCCAGGTTG 59.388 37.037 0.00 0.00 38.29 3.77
4029 4920 7.699878 ACCTTAATATTCAGAAACTCCAGGTT 58.300 34.615 0.00 0.00 40.28 3.50
4030 4921 7.272144 ACCTTAATATTCAGAAACTCCAGGT 57.728 36.000 0.00 0.00 0.00 4.00
4031 4922 6.768381 GGACCTTAATATTCAGAAACTCCAGG 59.232 42.308 0.00 0.00 0.00 4.45
4032 4923 7.281100 GTGGACCTTAATATTCAGAAACTCCAG 59.719 40.741 0.00 0.00 0.00 3.86
4033 4924 7.110155 GTGGACCTTAATATTCAGAAACTCCA 58.890 38.462 0.00 1.20 0.00 3.86
4034 4925 6.542735 GGTGGACCTTAATATTCAGAAACTCC 59.457 42.308 0.00 0.00 0.00 3.85
4035 4926 7.110155 TGGTGGACCTTAATATTCAGAAACTC 58.890 38.462 0.00 0.00 36.82 3.01
4036 4927 7.027874 TGGTGGACCTTAATATTCAGAAACT 57.972 36.000 0.00 0.00 36.82 2.66
4037 4928 7.175990 TGTTGGTGGACCTTAATATTCAGAAAC 59.824 37.037 0.00 0.00 36.82 2.78
4038 4929 7.175990 GTGTTGGTGGACCTTAATATTCAGAAA 59.824 37.037 0.00 0.00 36.82 2.52
4039 4930 6.657541 GTGTTGGTGGACCTTAATATTCAGAA 59.342 38.462 0.00 0.00 36.82 3.02
4040 4931 6.177610 GTGTTGGTGGACCTTAATATTCAGA 58.822 40.000 0.00 0.00 36.82 3.27
4041 4932 5.357032 GGTGTTGGTGGACCTTAATATTCAG 59.643 44.000 0.00 0.00 36.82 3.02
4042 4933 5.014755 AGGTGTTGGTGGACCTTAATATTCA 59.985 40.000 0.00 0.00 39.75 2.57
4043 4934 5.506708 AGGTGTTGGTGGACCTTAATATTC 58.493 41.667 0.00 0.00 39.75 1.75
4044 4935 5.530176 AGGTGTTGGTGGACCTTAATATT 57.470 39.130 0.00 0.00 39.75 1.28
4051 4942 5.530176 AATATTAAGGTGTTGGTGGACCT 57.470 39.130 0.00 0.00 44.94 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.