Multiple sequence alignment - TraesCS1B01G408500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G408500 chr1B 100.000 2581 0 0 1 2581 636129286 636131866 0.000000e+00 4767.0
1 TraesCS1B01G408500 chr1B 92.267 1707 79 18 274 1941 634506056 634504364 0.000000e+00 2372.0
2 TraesCS1B01G408500 chr1B 86.233 1431 144 30 318 1737 634017986 634016598 0.000000e+00 1502.0
3 TraesCS1B01G408500 chr1B 81.952 1629 251 25 4 1613 634115430 634113826 0.000000e+00 1339.0
4 TraesCS1B01G408500 chr1B 78.686 1614 289 40 1 1590 636063920 636065502 0.000000e+00 1024.0
5 TraesCS1B01G408500 chr1B 80.437 823 126 18 542 1352 636180565 636181364 1.710000e-166 595.0
6 TraesCS1B01G408500 chr1B 89.367 395 29 6 2191 2579 642181390 642181003 3.860000e-133 484.0
7 TraesCS1B01G408500 chr1B 95.623 297 13 0 1 297 634509694 634509398 6.460000e-131 477.0
8 TraesCS1B01G408500 chr1B 87.470 423 39 7 2163 2576 573390412 573389995 2.320000e-130 475.0
9 TraesCS1B01G408500 chr1B 90.950 221 15 3 1937 2152 634503968 634503748 2.510000e-75 292.0
10 TraesCS1B01G408500 chr1B 82.249 338 51 5 1 335 635386741 635387072 1.510000e-72 283.0
11 TraesCS1B01G408500 chr1A 92.200 1936 131 10 1 1933 553695216 553697134 0.000000e+00 2721.0
12 TraesCS1B01G408500 chr1A 90.898 1681 125 10 1 1665 552387372 552385704 0.000000e+00 2231.0
13 TraesCS1B01G408500 chr1A 82.136 1517 230 16 4 1516 552456929 552455450 0.000000e+00 1262.0
14 TraesCS1B01G408500 chr1A 79.485 1477 253 34 192 1649 553566684 553568129 0.000000e+00 1003.0
15 TraesCS1B01G408500 chr1A 85.417 432 37 11 2163 2575 581863947 581863523 2.370000e-115 425.0
16 TraesCS1B01G408500 chr1A 73.410 692 145 25 893 1559 552964589 552963912 3.340000e-54 222.0
17 TraesCS1B01G408500 chr1A 93.162 117 4 4 2019 2132 552966556 552966441 4.420000e-38 169.0
18 TraesCS1B01G408500 chr1A 91.743 109 4 5 2025 2132 553534165 553534269 2.070000e-31 147.0
19 TraesCS1B01G408500 chr1A 79.724 217 11 15 1937 2132 553697181 553697385 2.700000e-25 126.0
20 TraesCS1B01G408500 chr1A 72.340 423 88 19 4 421 552339186 552338788 3.510000e-19 106.0
21 TraesCS1B01G408500 chr1A 79.433 141 14 3 2159 2286 410448631 410448769 4.580000e-13 86.1
22 TraesCS1B01G408500 chr1D 93.064 793 37 9 1145 1936 462014015 462014790 0.000000e+00 1144.0
23 TraesCS1B01G408500 chr1D 94.010 601 29 5 558 1155 462009859 462010455 0.000000e+00 904.0
24 TraesCS1B01G408500 chr1D 94.561 570 31 0 1 570 461952520 461953089 0.000000e+00 881.0
25 TraesCS1B01G408500 chr1D 79.167 960 160 31 253 1203 461909304 461910232 1.690000e-176 628.0
26 TraesCS1B01G408500 chr1D 80.466 558 98 9 227 781 461755416 461755965 1.430000e-112 416.0
27 TraesCS1B01G408500 chr1D 88.430 121 10 4 2016 2132 461950733 461950853 2.680000e-30 143.0
28 TraesCS1B01G408500 chr1D 77.778 243 44 5 893 1132 461502230 461501995 9.630000e-30 141.0
29 TraesCS1B01G408500 chr3B 91.071 392 20 8 2191 2576 41013796 41013414 1.370000e-142 516.0
30 TraesCS1B01G408500 chr3B 89.948 388 35 4 2191 2576 16211152 16210767 4.960000e-137 497.0
31 TraesCS1B01G408500 chr7B 90.674 386 33 3 2196 2579 2664612 2664996 6.370000e-141 510.0
32 TraesCS1B01G408500 chr7B 91.743 109 5 3 2024 2132 17517893 17517789 5.750000e-32 148.0
33 TraesCS1B01G408500 chr6B 90.306 392 33 5 2191 2579 489450595 489450206 2.290000e-140 508.0
34 TraesCS1B01G408500 chr2B 90.551 381 31 3 2199 2576 539646894 539646516 1.380000e-137 499.0
35 TraesCS1B01G408500 chr5B 89.796 392 28 7 2191 2576 667520624 667520239 2.310000e-135 492.0
36 TraesCS1B01G408500 chr4B 89.717 389 33 5 2191 2576 566242481 566242865 8.300000e-135 490.0
37 TraesCS1B01G408500 chrUn 90.833 120 7 4 2016 2132 1071562 1071680 9.560000e-35 158.0
38 TraesCS1B01G408500 chrUn 91.453 117 6 4 2019 2132 300085008 300084893 9.560000e-35 158.0
39 TraesCS1B01G408500 chrUn 90.833 120 7 4 2016 2132 304178579 304178697 9.560000e-35 158.0
40 TraesCS1B01G408500 chrUn 72.669 472 92 24 957 1400 211006571 211006109 3.490000e-24 122.0
41 TraesCS1B01G408500 chr2D 88.710 124 3 10 2011 2132 584839629 584839515 9.630000e-30 141.0
42 TraesCS1B01G408500 chr6A 92.105 38 2 1 2160 2197 70574827 70574863 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G408500 chr1B 636129286 636131866 2580 False 4767.0 4767 100.000000 1 2581 1 chr1B.!!$F3 2580
1 TraesCS1B01G408500 chr1B 634016598 634017986 1388 True 1502.0 1502 86.233000 318 1737 1 chr1B.!!$R2 1419
2 TraesCS1B01G408500 chr1B 634113826 634115430 1604 True 1339.0 1339 81.952000 4 1613 1 chr1B.!!$R3 1609
3 TraesCS1B01G408500 chr1B 634503748 634509694 5946 True 1047.0 2372 92.946667 1 2152 3 chr1B.!!$R5 2151
4 TraesCS1B01G408500 chr1B 636063920 636065502 1582 False 1024.0 1024 78.686000 1 1590 1 chr1B.!!$F2 1589
5 TraesCS1B01G408500 chr1B 636180565 636181364 799 False 595.0 595 80.437000 542 1352 1 chr1B.!!$F4 810
6 TraesCS1B01G408500 chr1A 552385704 552387372 1668 True 2231.0 2231 90.898000 1 1665 1 chr1A.!!$R2 1664
7 TraesCS1B01G408500 chr1A 553695216 553697385 2169 False 1423.5 2721 85.962000 1 2132 2 chr1A.!!$F4 2131
8 TraesCS1B01G408500 chr1A 552455450 552456929 1479 True 1262.0 1262 82.136000 4 1516 1 chr1A.!!$R3 1512
9 TraesCS1B01G408500 chr1A 553566684 553568129 1445 False 1003.0 1003 79.485000 192 1649 1 chr1A.!!$F3 1457
10 TraesCS1B01G408500 chr1D 462009859 462014790 4931 False 1024.0 1144 93.537000 558 1936 2 chr1D.!!$F4 1378
11 TraesCS1B01G408500 chr1D 461909304 461910232 928 False 628.0 628 79.167000 253 1203 1 chr1D.!!$F2 950
12 TraesCS1B01G408500 chr1D 461950733 461953089 2356 False 512.0 881 91.495500 1 2132 2 chr1D.!!$F3 2131
13 TraesCS1B01G408500 chr1D 461755416 461755965 549 False 416.0 416 80.466000 227 781 1 chr1D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 5772 1.078848 GGGCTGCAGTCAGTACAGG 60.079 63.158 21.89 0.0 42.29 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 11449 0.037975 TCGGACAAGTTTAGGGTCGC 60.038 55.0 0.0 0.0 32.39 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
280 2080 8.612619 TCAAAGAACTTGACTTGTCAATACTTC 58.387 33.333 15.35 14.75 39.20 3.01
430 5601 9.121517 GAAGATTGACATGTTTACATTTGTCTG 57.878 33.333 14.33 0.00 37.01 3.51
447 5618 3.057386 TGTCTGTTATCCGCGTTACAGAA 60.057 43.478 22.58 14.36 45.94 3.02
452 5623 4.989797 TGTTATCCGCGTTACAGAAAAAGA 59.010 37.500 4.92 0.00 0.00 2.52
480 5651 3.181512 GGCTCTTGCTCTCAAAATCTTCG 60.182 47.826 0.00 0.00 39.59 3.79
549 5720 1.201921 CGAATAGCTTGGACGTTGCAC 60.202 52.381 0.00 0.00 0.00 4.57
601 5772 1.078848 GGGCTGCAGTCAGTACAGG 60.079 63.158 21.89 0.00 42.29 4.00
851 6047 7.996385 ACCAAACTACATGGACATATTTAAGC 58.004 34.615 0.00 0.00 40.56 3.09
929 6151 9.827411 GTTTGTCCTTATTCAGAAAGTCAATAC 57.173 33.333 0.00 0.00 0.00 1.89
991 6213 7.127186 TCAAGAACCTGGAAATCATACTCCATA 59.873 37.037 0.00 0.00 40.92 2.74
1070 6292 1.988107 TGCTTCTCCTGTCCTGGAATT 59.012 47.619 0.00 0.00 35.43 2.17
1204 10005 0.826715 GGTGCTAGCAGACCTGATCA 59.173 55.000 20.03 0.00 0.00 2.92
1370 10202 2.416296 CGAATGCCTAACGGTAGACACA 60.416 50.000 9.67 4.64 0.00 3.72
1428 10260 3.373565 GCCCCGCCTCAACAAAGG 61.374 66.667 0.00 0.00 39.62 3.11
1494 10326 4.373116 GAGCCGTGGAGGTTGCGA 62.373 66.667 0.00 0.00 43.70 5.10
1542 10374 2.430465 AGCATGTGCAGTTCAAGGTAG 58.570 47.619 7.83 0.00 45.16 3.18
1669 10514 7.442969 TCATGTTGTTAGTACTAGTTTGGGTTG 59.557 37.037 0.00 0.00 0.00 3.77
1713 10558 9.195411 CAGAATAAAGCTTCATGCAGTTAAAAA 57.805 29.630 0.00 0.00 45.94 1.94
1714 10559 9.196552 AGAATAAAGCTTCATGCAGTTAAAAAC 57.803 29.630 0.00 0.00 45.94 2.43
1752 10597 1.696832 GCTTGTCCGCCGATGAACTC 61.697 60.000 0.00 0.00 0.00 3.01
1753 10598 1.079405 TTGTCCGCCGATGAACTCC 60.079 57.895 0.00 0.00 0.00 3.85
1754 10599 2.582498 GTCCGCCGATGAACTCCG 60.582 66.667 0.00 0.00 0.00 4.63
1755 10600 2.752640 TCCGCCGATGAACTCCGA 60.753 61.111 0.00 0.00 0.00 4.55
1756 10601 2.125326 TCCGCCGATGAACTCCGAT 61.125 57.895 0.00 0.00 0.00 4.18
1757 10602 1.951130 CCGCCGATGAACTCCGATG 60.951 63.158 0.00 0.00 0.00 3.84
1758 10603 1.065764 CGCCGATGAACTCCGATGA 59.934 57.895 0.00 0.00 0.00 2.92
1759 10604 0.527600 CGCCGATGAACTCCGATGAA 60.528 55.000 0.00 0.00 0.00 2.57
1760 10605 0.931005 GCCGATGAACTCCGATGAAC 59.069 55.000 0.00 0.00 0.00 3.18
1761 10606 1.471676 GCCGATGAACTCCGATGAACT 60.472 52.381 0.00 0.00 0.00 3.01
1768 10613 3.005050 TGAACTCCGATGAACTACGTGTT 59.995 43.478 0.00 0.00 42.38 3.32
1813 10658 0.948623 CCCGATGAACTGCGTGTTGA 60.949 55.000 0.00 0.00 39.30 3.18
1821 10666 3.679502 TGAACTGCGTGTTGATCATACTG 59.320 43.478 0.00 0.00 39.30 2.74
1829 10674 7.206687 TGCGTGTTGATCATACTGATACATAA 58.793 34.615 0.00 0.00 37.20 1.90
2132 11402 8.737168 ATACTTACCACTATACTACAACGACA 57.263 34.615 0.00 0.00 0.00 4.35
2133 11403 6.846350 ACTTACCACTATACTACAACGACAC 58.154 40.000 0.00 0.00 0.00 3.67
2134 11404 6.656693 ACTTACCACTATACTACAACGACACT 59.343 38.462 0.00 0.00 0.00 3.55
2138 11409 8.737168 ACCACTATACTACAACGACACTAATA 57.263 34.615 0.00 0.00 0.00 0.98
2152 11423 7.027161 ACGACACTAATACAAATTGAATTGGC 58.973 34.615 0.00 0.00 34.56 4.52
2153 11424 7.094377 ACGACACTAATACAAATTGAATTGGCT 60.094 33.333 0.00 0.00 34.56 4.75
2154 11425 8.394877 CGACACTAATACAAATTGAATTGGCTA 58.605 33.333 0.00 0.00 34.56 3.93
2164 11435 9.082313 ACAAATTGAATTGGCTATATCCTTAGG 57.918 33.333 0.00 0.00 34.56 2.69
2165 11436 9.082313 CAAATTGAATTGGCTATATCCTTAGGT 57.918 33.333 0.00 0.00 0.00 3.08
2166 11437 8.870075 AATTGAATTGGCTATATCCTTAGGTC 57.130 34.615 0.00 0.00 0.00 3.85
2167 11438 7.387265 TTGAATTGGCTATATCCTTAGGTCA 57.613 36.000 0.00 0.00 0.00 4.02
2168 11439 7.387265 TGAATTGGCTATATCCTTAGGTCAA 57.613 36.000 0.00 0.00 0.00 3.18
2169 11440 7.224297 TGAATTGGCTATATCCTTAGGTCAAC 58.776 38.462 0.00 0.00 0.00 3.18
2170 11441 7.072454 TGAATTGGCTATATCCTTAGGTCAACT 59.928 37.037 0.00 0.00 0.00 3.16
2171 11442 6.420913 TTGGCTATATCCTTAGGTCAACTC 57.579 41.667 0.00 0.00 0.00 3.01
2172 11443 4.838986 TGGCTATATCCTTAGGTCAACTCC 59.161 45.833 0.00 0.00 0.00 3.85
2173 11444 4.838986 GGCTATATCCTTAGGTCAACTCCA 59.161 45.833 0.00 0.00 0.00 3.86
2174 11445 5.279556 GGCTATATCCTTAGGTCAACTCCAC 60.280 48.000 0.00 0.00 0.00 4.02
2175 11446 5.279556 GCTATATCCTTAGGTCAACTCCACC 60.280 48.000 0.00 0.00 0.00 4.61
2176 11447 1.263356 TCCTTAGGTCAACTCCACCG 58.737 55.000 0.00 0.00 39.13 4.94
2177 11448 0.391263 CCTTAGGTCAACTCCACCGC 60.391 60.000 0.00 0.00 39.13 5.68
2178 11449 0.736325 CTTAGGTCAACTCCACCGCG 60.736 60.000 0.00 0.00 39.13 6.46
2179 11450 2.775032 TTAGGTCAACTCCACCGCGC 62.775 60.000 0.00 0.00 39.13 6.86
2188 11459 4.745751 CCACCGCGCGACCCTAAA 62.746 66.667 34.63 0.00 0.00 1.85
2189 11460 3.484547 CACCGCGCGACCCTAAAC 61.485 66.667 34.63 0.00 0.00 2.01
2190 11461 3.688159 ACCGCGCGACCCTAAACT 61.688 61.111 34.63 0.00 0.00 2.66
2191 11462 2.433664 CCGCGCGACCCTAAACTT 60.434 61.111 34.63 0.00 0.00 2.66
2192 11463 2.736682 CCGCGCGACCCTAAACTTG 61.737 63.158 34.63 5.49 0.00 3.16
2193 11464 2.025418 CGCGCGACCCTAAACTTGT 61.025 57.895 28.94 0.00 0.00 3.16
2194 11465 1.785951 GCGCGACCCTAAACTTGTC 59.214 57.895 12.10 0.00 0.00 3.18
2195 11466 1.632948 GCGCGACCCTAAACTTGTCC 61.633 60.000 12.10 0.00 0.00 4.02
2196 11467 1.349259 CGCGACCCTAAACTTGTCCG 61.349 60.000 0.00 0.00 0.00 4.79
2197 11468 0.037975 GCGACCCTAAACTTGTCCGA 60.038 55.000 0.00 0.00 0.00 4.55
2198 11469 1.606224 GCGACCCTAAACTTGTCCGAA 60.606 52.381 0.00 0.00 0.00 4.30
2199 11470 2.933928 GCGACCCTAAACTTGTCCGAAT 60.934 50.000 0.00 0.00 0.00 3.34
2200 11471 3.332034 CGACCCTAAACTTGTCCGAATT 58.668 45.455 0.00 0.00 0.00 2.17
2201 11472 3.370061 CGACCCTAAACTTGTCCGAATTC 59.630 47.826 0.00 0.00 0.00 2.17
2202 11473 4.576879 GACCCTAAACTTGTCCGAATTCT 58.423 43.478 3.52 0.00 0.00 2.40
2203 11474 5.622914 CGACCCTAAACTTGTCCGAATTCTA 60.623 44.000 3.52 0.00 0.00 2.10
2204 11475 6.309389 ACCCTAAACTTGTCCGAATTCTAT 57.691 37.500 3.52 0.00 0.00 1.98
2205 11476 6.346896 ACCCTAAACTTGTCCGAATTCTATC 58.653 40.000 3.52 0.00 0.00 2.08
2206 11477 5.758784 CCCTAAACTTGTCCGAATTCTATCC 59.241 44.000 3.52 0.00 0.00 2.59
2207 11478 5.462398 CCTAAACTTGTCCGAATTCTATCCG 59.538 44.000 3.52 0.00 0.00 4.18
2208 11479 4.467198 AACTTGTCCGAATTCTATCCGT 57.533 40.909 3.52 0.00 0.00 4.69
2209 11480 4.467198 ACTTGTCCGAATTCTATCCGTT 57.533 40.909 3.52 0.00 0.00 4.44
2210 11481 4.828829 ACTTGTCCGAATTCTATCCGTTT 58.171 39.130 3.52 0.00 0.00 3.60
2211 11482 4.630069 ACTTGTCCGAATTCTATCCGTTTG 59.370 41.667 3.52 0.00 0.00 2.93
2212 11483 3.527533 TGTCCGAATTCTATCCGTTTGG 58.472 45.455 3.52 0.00 0.00 3.28
2213 11484 2.870411 GTCCGAATTCTATCCGTTTGGG 59.130 50.000 3.52 0.00 35.24 4.12
2214 11485 1.602377 CCGAATTCTATCCGTTTGGGC 59.398 52.381 3.52 0.00 35.24 5.36
2215 11486 2.285083 CGAATTCTATCCGTTTGGGCA 58.715 47.619 3.52 0.00 35.24 5.36
2216 11487 2.287915 CGAATTCTATCCGTTTGGGCAG 59.712 50.000 3.52 0.00 35.24 4.85
2217 11488 2.348411 ATTCTATCCGTTTGGGCAGG 57.652 50.000 0.00 0.00 35.24 4.85
2218 11489 1.281419 TTCTATCCGTTTGGGCAGGA 58.719 50.000 0.00 0.00 38.56 3.86
2219 11490 0.830648 TCTATCCGTTTGGGCAGGAG 59.169 55.000 0.00 0.00 37.49 3.69
2220 11491 0.179045 CTATCCGTTTGGGCAGGAGG 60.179 60.000 0.00 0.00 37.49 4.30
2221 11492 0.619255 TATCCGTTTGGGCAGGAGGA 60.619 55.000 0.00 0.00 37.49 3.71
2222 11493 1.281925 ATCCGTTTGGGCAGGAGGAT 61.282 55.000 0.00 0.00 37.49 3.24
2223 11494 1.750399 CCGTTTGGGCAGGAGGATG 60.750 63.158 0.00 0.00 0.00 3.51
2224 11495 1.750399 CGTTTGGGCAGGAGGATGG 60.750 63.158 0.00 0.00 0.00 3.51
2225 11496 1.380380 GTTTGGGCAGGAGGATGGG 60.380 63.158 0.00 0.00 0.00 4.00
2226 11497 2.625460 TTTGGGCAGGAGGATGGGG 61.625 63.158 0.00 0.00 0.00 4.96
2227 11498 3.908712 TTGGGCAGGAGGATGGGGT 62.909 63.158 0.00 0.00 0.00 4.95
2228 11499 3.493303 GGGCAGGAGGATGGGGTC 61.493 72.222 0.00 0.00 0.00 4.46
2229 11500 3.866582 GGCAGGAGGATGGGGTCG 61.867 72.222 0.00 0.00 0.00 4.79
2230 11501 3.083997 GCAGGAGGATGGGGTCGT 61.084 66.667 0.00 0.00 0.00 4.34
2231 11502 2.903357 CAGGAGGATGGGGTCGTG 59.097 66.667 0.00 0.00 0.00 4.35
2232 11503 1.990060 CAGGAGGATGGGGTCGTGT 60.990 63.158 0.00 0.00 0.00 4.49
2233 11504 1.229529 AGGAGGATGGGGTCGTGTT 60.230 57.895 0.00 0.00 0.00 3.32
2234 11505 1.221021 GGAGGATGGGGTCGTGTTC 59.779 63.158 0.00 0.00 0.00 3.18
2235 11506 1.153628 GAGGATGGGGTCGTGTTCG 60.154 63.158 0.00 0.00 38.55 3.95
2236 11507 2.125269 GGATGGGGTCGTGTTCGG 60.125 66.667 0.00 0.00 37.69 4.30
2237 11508 2.125269 GATGGGGTCGTGTTCGGG 60.125 66.667 0.00 0.00 37.69 5.14
2238 11509 4.404098 ATGGGGTCGTGTTCGGGC 62.404 66.667 0.00 0.00 37.69 6.13
2240 11511 4.404098 GGGGTCGTGTTCGGGCAT 62.404 66.667 0.00 0.00 37.69 4.40
2241 11512 3.124921 GGGTCGTGTTCGGGCATG 61.125 66.667 0.00 0.00 37.69 4.06
2242 11513 2.358247 GGTCGTGTTCGGGCATGT 60.358 61.111 0.00 0.00 37.69 3.21
2243 11514 2.388232 GGTCGTGTTCGGGCATGTC 61.388 63.158 0.00 0.00 37.69 3.06
2244 11515 1.374252 GTCGTGTTCGGGCATGTCT 60.374 57.895 0.00 0.00 37.69 3.41
2245 11516 0.949105 GTCGTGTTCGGGCATGTCTT 60.949 55.000 0.00 0.00 37.69 3.01
2246 11517 0.948623 TCGTGTTCGGGCATGTCTTG 60.949 55.000 0.00 0.00 37.69 3.02
2247 11518 1.875963 GTGTTCGGGCATGTCTTGG 59.124 57.895 0.00 0.00 0.00 3.61
2248 11519 1.303236 TGTTCGGGCATGTCTTGGG 60.303 57.895 0.00 0.00 0.00 4.12
2249 11520 1.002624 GTTCGGGCATGTCTTGGGA 60.003 57.895 0.00 0.00 0.00 4.37
2250 11521 0.394352 GTTCGGGCATGTCTTGGGAT 60.394 55.000 0.00 0.00 0.00 3.85
2251 11522 0.394216 TTCGGGCATGTCTTGGGATG 60.394 55.000 0.00 0.00 0.00 3.51
2252 11523 2.484062 CGGGCATGTCTTGGGATGC 61.484 63.158 0.00 0.00 43.60 3.91
2253 11524 2.484062 GGGCATGTCTTGGGATGCG 61.484 63.158 0.00 0.00 44.98 4.73
2254 11525 2.484062 GGCATGTCTTGGGATGCGG 61.484 63.158 0.00 0.00 44.98 5.69
2255 11526 1.750399 GCATGTCTTGGGATGCGGT 60.750 57.895 0.00 0.00 35.95 5.68
2256 11527 1.996786 GCATGTCTTGGGATGCGGTG 61.997 60.000 0.00 0.00 35.95 4.94
2257 11528 1.077501 ATGTCTTGGGATGCGGTGG 60.078 57.895 0.00 0.00 0.00 4.61
2258 11529 3.134127 GTCTTGGGATGCGGTGGC 61.134 66.667 0.00 0.00 40.52 5.01
2259 11530 4.424711 TCTTGGGATGCGGTGGCC 62.425 66.667 0.00 0.00 38.85 5.36
2289 11560 3.937062 CGCGGCCGCATCCTTTAC 61.937 66.667 45.26 16.94 42.06 2.01
2290 11561 3.583086 GCGGCCGCATCCTTTACC 61.583 66.667 43.55 11.09 41.49 2.85
2291 11562 2.124901 CGGCCGCATCCTTTACCA 60.125 61.111 14.67 0.00 0.00 3.25
2292 11563 2.469516 CGGCCGCATCCTTTACCAC 61.470 63.158 14.67 0.00 0.00 4.16
2293 11564 1.377987 GGCCGCATCCTTTACCACA 60.378 57.895 0.00 0.00 0.00 4.17
2294 11565 0.751643 GGCCGCATCCTTTACCACAT 60.752 55.000 0.00 0.00 0.00 3.21
2295 11566 0.663153 GCCGCATCCTTTACCACATC 59.337 55.000 0.00 0.00 0.00 3.06
2296 11567 1.308998 CCGCATCCTTTACCACATCC 58.691 55.000 0.00 0.00 0.00 3.51
2297 11568 1.134098 CCGCATCCTTTACCACATCCT 60.134 52.381 0.00 0.00 0.00 3.24
2298 11569 1.942657 CGCATCCTTTACCACATCCTG 59.057 52.381 0.00 0.00 0.00 3.86
2299 11570 2.680805 CGCATCCTTTACCACATCCTGT 60.681 50.000 0.00 0.00 0.00 4.00
2300 11571 2.945668 GCATCCTTTACCACATCCTGTC 59.054 50.000 0.00 0.00 0.00 3.51
2301 11572 3.370953 GCATCCTTTACCACATCCTGTCT 60.371 47.826 0.00 0.00 0.00 3.41
2302 11573 3.981071 TCCTTTACCACATCCTGTCTG 57.019 47.619 0.00 0.00 0.00 3.51
2303 11574 2.027192 TCCTTTACCACATCCTGTCTGC 60.027 50.000 0.00 0.00 0.00 4.26
2304 11575 2.002586 CTTTACCACATCCTGTCTGCG 58.997 52.381 0.00 0.00 0.00 5.18
2305 11576 0.973632 TTACCACATCCTGTCTGCGT 59.026 50.000 0.00 0.00 0.00 5.24
2306 11577 0.530744 TACCACATCCTGTCTGCGTC 59.469 55.000 0.00 0.00 0.00 5.19
2307 11578 1.188219 ACCACATCCTGTCTGCGTCT 61.188 55.000 0.00 0.00 0.00 4.18
2308 11579 0.817654 CCACATCCTGTCTGCGTCTA 59.182 55.000 0.00 0.00 0.00 2.59
2309 11580 1.410517 CCACATCCTGTCTGCGTCTAT 59.589 52.381 0.00 0.00 0.00 1.98
2310 11581 2.159043 CCACATCCTGTCTGCGTCTATT 60.159 50.000 0.00 0.00 0.00 1.73
2311 11582 3.525537 CACATCCTGTCTGCGTCTATTT 58.474 45.455 0.00 0.00 0.00 1.40
2312 11583 3.308053 CACATCCTGTCTGCGTCTATTTG 59.692 47.826 0.00 0.00 0.00 2.32
2313 11584 3.055819 ACATCCTGTCTGCGTCTATTTGT 60.056 43.478 0.00 0.00 0.00 2.83
2314 11585 3.678056 TCCTGTCTGCGTCTATTTGTT 57.322 42.857 0.00 0.00 0.00 2.83
2315 11586 4.794278 TCCTGTCTGCGTCTATTTGTTA 57.206 40.909 0.00 0.00 0.00 2.41
2316 11587 5.142061 TCCTGTCTGCGTCTATTTGTTAA 57.858 39.130 0.00 0.00 0.00 2.01
2317 11588 5.543714 TCCTGTCTGCGTCTATTTGTTAAA 58.456 37.500 0.00 0.00 0.00 1.52
2318 11589 5.992829 TCCTGTCTGCGTCTATTTGTTAAAA 59.007 36.000 0.00 0.00 0.00 1.52
2319 11590 6.483974 TCCTGTCTGCGTCTATTTGTTAAAAA 59.516 34.615 0.00 0.00 0.00 1.94
2338 11609 3.942539 AAAAGCAACGTTTCAAATGCC 57.057 38.095 0.00 0.00 39.59 4.40
2339 11610 2.593346 AAGCAACGTTTCAAATGCCA 57.407 40.000 0.00 0.00 39.59 4.92
2340 11611 2.593346 AGCAACGTTTCAAATGCCAA 57.407 40.000 0.00 0.00 39.59 4.52
2341 11612 2.472816 AGCAACGTTTCAAATGCCAAG 58.527 42.857 0.00 0.00 39.59 3.61
2342 11613 1.070643 GCAACGTTTCAAATGCCAAGC 60.071 47.619 0.00 0.00 32.73 4.01
2343 11614 1.526464 CAACGTTTCAAATGCCAAGCC 59.474 47.619 0.00 0.00 0.00 4.35
2344 11615 1.039856 ACGTTTCAAATGCCAAGCCT 58.960 45.000 0.00 0.00 0.00 4.58
2345 11616 2.235016 ACGTTTCAAATGCCAAGCCTA 58.765 42.857 0.00 0.00 0.00 3.93
2346 11617 2.825532 ACGTTTCAAATGCCAAGCCTAT 59.174 40.909 0.00 0.00 0.00 2.57
2347 11618 3.181397 CGTTTCAAATGCCAAGCCTATG 58.819 45.455 0.00 0.00 0.00 2.23
2348 11619 3.524541 GTTTCAAATGCCAAGCCTATGG 58.475 45.455 0.00 0.00 43.70 2.74
2349 11620 2.530460 TCAAATGCCAAGCCTATGGT 57.470 45.000 3.09 0.00 42.75 3.55
2350 11621 2.378038 TCAAATGCCAAGCCTATGGTC 58.622 47.619 3.09 0.00 42.75 4.02
2351 11622 1.410153 CAAATGCCAAGCCTATGGTCC 59.590 52.381 3.09 0.00 42.75 4.46
2352 11623 0.106015 AATGCCAAGCCTATGGTCCC 60.106 55.000 3.09 0.00 42.75 4.46
2353 11624 1.288508 ATGCCAAGCCTATGGTCCCA 61.289 55.000 3.09 0.00 42.75 4.37
2354 11625 1.152881 GCCAAGCCTATGGTCCCAG 60.153 63.158 3.09 0.00 42.75 4.45
2355 11626 1.926426 GCCAAGCCTATGGTCCCAGT 61.926 60.000 3.09 0.00 42.75 4.00
2356 11627 0.625849 CCAAGCCTATGGTCCCAGTT 59.374 55.000 0.00 0.00 35.65 3.16
2357 11628 1.408822 CCAAGCCTATGGTCCCAGTTC 60.409 57.143 0.00 0.00 35.65 3.01
2358 11629 1.281867 CAAGCCTATGGTCCCAGTTCA 59.718 52.381 0.00 0.00 0.00 3.18
2359 11630 1.898863 AGCCTATGGTCCCAGTTCAT 58.101 50.000 0.00 0.00 0.00 2.57
2360 11631 1.771255 AGCCTATGGTCCCAGTTCATC 59.229 52.381 0.00 0.00 0.00 2.92
2361 11632 1.490490 GCCTATGGTCCCAGTTCATCA 59.510 52.381 0.00 0.00 0.00 3.07
2362 11633 2.746472 GCCTATGGTCCCAGTTCATCAC 60.746 54.545 0.00 0.00 0.00 3.06
2363 11634 2.483714 CCTATGGTCCCAGTTCATCACG 60.484 54.545 0.00 0.00 0.00 4.35
2364 11635 0.392998 ATGGTCCCAGTTCATCACGC 60.393 55.000 0.00 0.00 0.00 5.34
2365 11636 1.003839 GGTCCCAGTTCATCACGCA 60.004 57.895 0.00 0.00 0.00 5.24
2366 11637 1.298859 GGTCCCAGTTCATCACGCAC 61.299 60.000 0.00 0.00 0.00 5.34
2367 11638 1.374125 TCCCAGTTCATCACGCACG 60.374 57.895 0.00 0.00 0.00 5.34
2368 11639 2.476051 CCAGTTCATCACGCACGC 59.524 61.111 0.00 0.00 0.00 5.34
2369 11640 2.476051 CAGTTCATCACGCACGCC 59.524 61.111 0.00 0.00 0.00 5.68
2370 11641 3.112075 AGTTCATCACGCACGCCG 61.112 61.111 0.00 0.00 44.21 6.46
2371 11642 4.147322 GTTCATCACGCACGCCGG 62.147 66.667 0.00 0.00 42.52 6.13
2397 11668 4.814294 CCAGCGGCCTACACGTCC 62.814 72.222 0.00 0.00 0.00 4.79
2398 11669 4.063967 CAGCGGCCTACACGTCCA 62.064 66.667 0.00 0.00 0.00 4.02
2399 11670 3.075005 AGCGGCCTACACGTCCAT 61.075 61.111 0.00 0.00 0.00 3.41
2400 11671 2.585247 GCGGCCTACACGTCCATC 60.585 66.667 0.00 0.00 0.00 3.51
2401 11672 2.889617 CGGCCTACACGTCCATCA 59.110 61.111 0.00 0.00 0.00 3.07
2402 11673 1.518572 CGGCCTACACGTCCATCAC 60.519 63.158 0.00 0.00 0.00 3.06
2403 11674 1.153429 GGCCTACACGTCCATCACC 60.153 63.158 0.00 0.00 0.00 4.02
2404 11675 1.518572 GCCTACACGTCCATCACCG 60.519 63.158 0.00 0.00 0.00 4.94
2405 11676 1.141019 CCTACACGTCCATCACCGG 59.859 63.158 0.00 0.00 0.00 5.28
2406 11677 1.518572 CTACACGTCCATCACCGGC 60.519 63.158 0.00 0.00 0.00 6.13
2407 11678 2.220615 CTACACGTCCATCACCGGCA 62.221 60.000 0.00 0.00 0.00 5.69
2408 11679 1.609635 TACACGTCCATCACCGGCAT 61.610 55.000 0.00 0.00 0.00 4.40
2409 11680 2.173669 CACGTCCATCACCGGCATC 61.174 63.158 0.00 0.00 0.00 3.91
2410 11681 2.186644 CGTCCATCACCGGCATCA 59.813 61.111 0.00 0.00 0.00 3.07
2411 11682 1.884464 CGTCCATCACCGGCATCAG 60.884 63.158 0.00 0.00 0.00 2.90
2412 11683 2.182842 GTCCATCACCGGCATCAGC 61.183 63.158 0.00 0.00 41.10 4.26
2439 11710 3.368571 GCAACACAGCCAGCCTCC 61.369 66.667 0.00 0.00 0.00 4.30
2440 11711 2.113774 CAACACAGCCAGCCTCCA 59.886 61.111 0.00 0.00 0.00 3.86
2441 11712 1.529010 CAACACAGCCAGCCTCCAA 60.529 57.895 0.00 0.00 0.00 3.53
2442 11713 1.108727 CAACACAGCCAGCCTCCAAA 61.109 55.000 0.00 0.00 0.00 3.28
2443 11714 0.396974 AACACAGCCAGCCTCCAAAA 60.397 50.000 0.00 0.00 0.00 2.44
2444 11715 0.178953 ACACAGCCAGCCTCCAAAAT 60.179 50.000 0.00 0.00 0.00 1.82
2445 11716 0.245539 CACAGCCAGCCTCCAAAATG 59.754 55.000 0.00 0.00 0.00 2.32
2446 11717 0.112995 ACAGCCAGCCTCCAAAATGA 59.887 50.000 0.00 0.00 0.00 2.57
2447 11718 1.259609 CAGCCAGCCTCCAAAATGAA 58.740 50.000 0.00 0.00 0.00 2.57
2448 11719 1.829222 CAGCCAGCCTCCAAAATGAAT 59.171 47.619 0.00 0.00 0.00 2.57
2449 11720 1.829222 AGCCAGCCTCCAAAATGAATG 59.171 47.619 0.00 0.00 0.00 2.67
2450 11721 1.134610 GCCAGCCTCCAAAATGAATGG 60.135 52.381 0.00 0.00 39.41 3.16
2451 11722 2.181975 CCAGCCTCCAAAATGAATGGT 58.818 47.619 0.00 0.00 39.09 3.55
2452 11723 2.568509 CCAGCCTCCAAAATGAATGGTT 59.431 45.455 0.00 0.00 39.09 3.67
2453 11724 3.592059 CAGCCTCCAAAATGAATGGTTG 58.408 45.455 0.00 0.00 39.09 3.77
2454 11725 3.007182 CAGCCTCCAAAATGAATGGTTGT 59.993 43.478 0.00 0.00 39.09 3.32
2455 11726 3.259123 AGCCTCCAAAATGAATGGTTGTC 59.741 43.478 0.00 0.00 39.09 3.18
2456 11727 3.617288 GCCTCCAAAATGAATGGTTGTCC 60.617 47.826 0.00 0.00 39.09 4.02
2457 11728 3.834231 CCTCCAAAATGAATGGTTGTCCT 59.166 43.478 0.00 0.00 39.09 3.85
2458 11729 4.284234 CCTCCAAAATGAATGGTTGTCCTT 59.716 41.667 0.00 0.00 39.09 3.36
2459 11730 5.212532 TCCAAAATGAATGGTTGTCCTTG 57.787 39.130 0.00 0.00 39.09 3.61
2460 11731 3.747529 CCAAAATGAATGGTTGTCCTTGC 59.252 43.478 0.00 0.00 33.08 4.01
2461 11732 3.683365 AAATGAATGGTTGTCCTTGCC 57.317 42.857 0.00 0.00 34.23 4.52
2462 11733 1.176527 ATGAATGGTTGTCCTTGCCG 58.823 50.000 0.00 0.00 34.23 5.69
2463 11734 0.893270 TGAATGGTTGTCCTTGCCGG 60.893 55.000 0.00 0.00 34.23 6.13
2464 11735 2.212900 GAATGGTTGTCCTTGCCGGC 62.213 60.000 22.73 22.73 34.23 6.13
2465 11736 2.992817 AATGGTTGTCCTTGCCGGCA 62.993 55.000 29.03 29.03 34.23 5.69
2466 11737 2.909965 GGTTGTCCTTGCCGGCAA 60.910 61.111 37.78 37.78 0.00 4.52
2467 11738 2.335011 GTTGTCCTTGCCGGCAAC 59.665 61.111 37.30 28.32 40.21 4.17
2468 11739 2.124109 TTGTCCTTGCCGGCAACA 60.124 55.556 37.30 30.61 0.00 3.33
2469 11740 2.485795 TTGTCCTTGCCGGCAACAC 61.486 57.895 37.30 32.07 0.00 3.32
2470 11741 2.904866 GTCCTTGCCGGCAACACA 60.905 61.111 37.30 20.63 0.00 3.72
2471 11742 2.594303 TCCTTGCCGGCAACACAG 60.594 61.111 37.30 26.70 0.00 3.66
2472 11743 4.347453 CCTTGCCGGCAACACAGC 62.347 66.667 37.30 2.97 0.00 4.40
2497 11768 4.988598 CGGCAACACAGTCGGCCT 62.989 66.667 0.00 0.00 44.23 5.19
2498 11769 2.594592 GGCAACACAGTCGGCCTT 60.595 61.111 0.00 0.00 43.09 4.35
2499 11770 2.617274 GGCAACACAGTCGGCCTTC 61.617 63.158 0.00 0.00 43.09 3.46
2500 11771 1.891919 GCAACACAGTCGGCCTTCA 60.892 57.895 0.00 0.00 0.00 3.02
2501 11772 1.444119 GCAACACAGTCGGCCTTCAA 61.444 55.000 0.00 0.00 0.00 2.69
2502 11773 1.021202 CAACACAGTCGGCCTTCAAA 58.979 50.000 0.00 0.00 0.00 2.69
2503 11774 1.403679 CAACACAGTCGGCCTTCAAAA 59.596 47.619 0.00 0.00 0.00 2.44
2504 11775 1.981256 ACACAGTCGGCCTTCAAAAT 58.019 45.000 0.00 0.00 0.00 1.82
2505 11776 1.608590 ACACAGTCGGCCTTCAAAATG 59.391 47.619 0.00 0.00 0.00 2.32
2506 11777 1.879380 CACAGTCGGCCTTCAAAATGA 59.121 47.619 0.00 0.00 0.00 2.57
2507 11778 2.293122 CACAGTCGGCCTTCAAAATGAA 59.707 45.455 0.00 0.00 34.79 2.57
2508 11779 3.057315 CACAGTCGGCCTTCAAAATGAAT 60.057 43.478 0.00 0.00 35.59 2.57
2509 11780 3.057315 ACAGTCGGCCTTCAAAATGAATG 60.057 43.478 0.00 0.00 35.59 2.67
2510 11781 2.493278 AGTCGGCCTTCAAAATGAATGG 59.507 45.455 0.00 0.00 35.59 3.16
2511 11782 2.231235 GTCGGCCTTCAAAATGAATGGT 59.769 45.455 0.00 0.00 35.59 3.55
2512 11783 2.896685 TCGGCCTTCAAAATGAATGGTT 59.103 40.909 0.00 0.00 35.59 3.67
2513 11784 3.323403 TCGGCCTTCAAAATGAATGGTTT 59.677 39.130 0.00 0.00 35.59 3.27
2514 11785 4.064388 CGGCCTTCAAAATGAATGGTTTT 58.936 39.130 0.00 0.00 35.59 2.43
2515 11786 4.152223 CGGCCTTCAAAATGAATGGTTTTC 59.848 41.667 0.00 0.00 35.59 2.29
2516 11787 5.308014 GGCCTTCAAAATGAATGGTTTTCT 58.692 37.500 0.00 0.00 35.59 2.52
2517 11788 5.409520 GGCCTTCAAAATGAATGGTTTTCTC 59.590 40.000 0.00 0.00 35.59 2.87
2518 11789 5.119125 GCCTTCAAAATGAATGGTTTTCTCG 59.881 40.000 0.00 0.00 35.59 4.04
2519 11790 5.119125 CCTTCAAAATGAATGGTTTTCTCGC 59.881 40.000 0.00 0.00 35.59 5.03
2520 11791 4.555262 TCAAAATGAATGGTTTTCTCGCC 58.445 39.130 0.00 0.00 0.00 5.54
2521 11792 2.919666 AATGAATGGTTTTCTCGCCG 57.080 45.000 0.00 0.00 0.00 6.46
2522 11793 1.094785 ATGAATGGTTTTCTCGCCGG 58.905 50.000 0.00 0.00 0.00 6.13
2523 11794 1.136774 GAATGGTTTTCTCGCCGGC 59.863 57.895 19.07 19.07 0.00 6.13
2524 11795 1.582610 GAATGGTTTTCTCGCCGGCA 61.583 55.000 28.98 12.94 0.00 5.69
2525 11796 1.862602 AATGGTTTTCTCGCCGGCAC 61.863 55.000 28.98 15.81 0.00 5.01
2526 11797 2.975799 GGTTTTCTCGCCGGCACA 60.976 61.111 28.98 11.52 0.00 4.57
2527 11798 2.251371 GTTTTCTCGCCGGCACAC 59.749 61.111 28.98 6.10 0.00 3.82
2528 11799 2.203084 TTTTCTCGCCGGCACACA 60.203 55.556 28.98 3.92 0.00 3.72
2529 11800 2.250939 TTTTCTCGCCGGCACACAG 61.251 57.895 28.98 15.92 0.00 3.66
2570 11841 4.051167 CACCCATGCCAGCCTCCA 62.051 66.667 0.00 0.00 0.00 3.86
2571 11842 3.267233 ACCCATGCCAGCCTCCAA 61.267 61.111 0.00 0.00 0.00 3.53
2572 11843 2.037687 CCCATGCCAGCCTCCAAA 59.962 61.111 0.00 0.00 0.00 3.28
2573 11844 1.610086 CCCATGCCAGCCTCCAAAA 60.610 57.895 0.00 0.00 0.00 2.44
2574 11845 1.193462 CCCATGCCAGCCTCCAAAAA 61.193 55.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
430 5601 5.520022 TCTTTTTCTGTAACGCGGATAAC 57.480 39.130 12.47 3.05 31.57 1.89
447 5618 4.928263 AGAGCAAGAGCCCTAATTCTTTT 58.072 39.130 0.00 0.00 43.56 2.27
452 5623 4.307032 TTTGAGAGCAAGAGCCCTAATT 57.693 40.909 0.00 0.00 43.56 1.40
549 5720 7.552687 TGTATCAAACTAAGGTATTTGAGCTGG 59.447 37.037 0.00 0.00 45.38 4.85
601 5772 1.063174 GCAGAGATTTGGTGCATCGAC 59.937 52.381 0.00 0.00 37.16 4.20
707 5882 3.698539 ACGAGCATCAGAGAGAAGAATCA 59.301 43.478 0.00 0.00 33.17 2.57
929 6151 2.167075 GAGGGCAACATTGGAATTGGAG 59.833 50.000 0.00 0.00 39.74 3.86
1070 6292 6.463995 AGTGACTTACCTGCAAAATGAAAA 57.536 33.333 0.00 0.00 0.00 2.29
1204 10005 1.849097 GTTGTCGTCTCCAGAAACGT 58.151 50.000 0.00 0.00 39.78 3.99
1318 10150 1.035923 GCTCTCGAGGATGTGGATCA 58.964 55.000 13.56 0.00 0.00 2.92
1428 10260 1.203052 CATTGCCCAACACTGACCATC 59.797 52.381 0.00 0.00 30.70 3.51
1494 10326 2.184322 CCACGCGATGCACCTACT 59.816 61.111 15.93 0.00 0.00 2.57
1529 10361 2.418884 GGGCTCTACTACCTTGAACTGC 60.419 54.545 0.00 0.00 0.00 4.40
1542 10374 0.382515 CAGCGACTACAGGGCTCTAC 59.617 60.000 0.00 0.00 34.13 2.59
1713 10558 2.753168 GCCAGGAGGAAAGTTGGAAAGT 60.753 50.000 0.00 0.00 36.89 2.66
1714 10559 1.889170 GCCAGGAGGAAAGTTGGAAAG 59.111 52.381 0.00 0.00 36.89 2.62
1752 10597 4.208355 CAAAACAACACGTAGTTCATCGG 58.792 43.478 0.00 0.00 41.61 4.18
1753 10598 4.828704 ACAAAACAACACGTAGTTCATCG 58.171 39.130 0.00 0.00 41.61 3.84
1754 10599 5.202640 GGACAAAACAACACGTAGTTCATC 58.797 41.667 0.00 0.00 41.61 2.92
1755 10600 4.260456 CGGACAAAACAACACGTAGTTCAT 60.260 41.667 0.00 0.00 41.61 2.57
1756 10601 3.062369 CGGACAAAACAACACGTAGTTCA 59.938 43.478 0.00 0.00 41.61 3.18
1757 10602 3.544637 CCGGACAAAACAACACGTAGTTC 60.545 47.826 0.00 0.00 41.61 3.01
1758 10603 2.352342 CCGGACAAAACAACACGTAGTT 59.648 45.455 0.00 0.00 41.61 2.24
1760 10605 1.333435 GCCGGACAAAACAACACGTAG 60.333 52.381 5.05 0.00 0.00 3.51
1761 10606 0.656785 GCCGGACAAAACAACACGTA 59.343 50.000 5.05 0.00 0.00 3.57
1768 10613 1.309950 TTTCATCGCCGGACAAAACA 58.690 45.000 5.05 0.00 0.00 2.83
2017 11283 8.103305 TCCTATTCTTTTTCTGCACTTCTACAT 58.897 33.333 0.00 0.00 0.00 2.29
2138 11409 9.082313 CCTAAGGATATAGCCAATTCAATTTGT 57.918 33.333 10.21 0.00 0.00 2.83
2145 11416 7.454225 AGTTGACCTAAGGATATAGCCAATTC 58.546 38.462 10.21 0.00 0.00 2.17
2152 11423 5.047943 CGGTGGAGTTGACCTAAGGATATAG 60.048 48.000 0.00 0.00 0.00 1.31
2153 11424 4.831155 CGGTGGAGTTGACCTAAGGATATA 59.169 45.833 0.00 0.00 0.00 0.86
2154 11425 3.641906 CGGTGGAGTTGACCTAAGGATAT 59.358 47.826 0.00 0.00 0.00 1.63
2155 11426 3.028850 CGGTGGAGTTGACCTAAGGATA 58.971 50.000 0.00 0.00 0.00 2.59
2156 11427 1.831736 CGGTGGAGTTGACCTAAGGAT 59.168 52.381 0.00 0.00 0.00 3.24
2157 11428 1.263356 CGGTGGAGTTGACCTAAGGA 58.737 55.000 0.00 0.00 0.00 3.36
2158 11429 0.391263 GCGGTGGAGTTGACCTAAGG 60.391 60.000 0.00 0.00 0.00 2.69
2159 11430 0.736325 CGCGGTGGAGTTGACCTAAG 60.736 60.000 0.00 0.00 0.00 2.18
2160 11431 1.290955 CGCGGTGGAGTTGACCTAA 59.709 57.895 0.00 0.00 0.00 2.69
2161 11432 2.967397 CGCGGTGGAGTTGACCTA 59.033 61.111 0.00 0.00 0.00 3.08
2162 11433 4.681978 GCGCGGTGGAGTTGACCT 62.682 66.667 8.83 0.00 0.00 3.85
2171 11442 4.745751 TTTAGGGTCGCGCGGTGG 62.746 66.667 31.69 0.71 0.00 4.61
2172 11443 3.484547 GTTTAGGGTCGCGCGGTG 61.485 66.667 31.69 1.17 0.00 4.94
2173 11444 3.230522 AAGTTTAGGGTCGCGCGGT 62.231 57.895 31.69 14.72 0.00 5.68
2174 11445 2.433664 AAGTTTAGGGTCGCGCGG 60.434 61.111 31.69 11.75 0.00 6.46
2175 11446 1.952266 GACAAGTTTAGGGTCGCGCG 61.952 60.000 26.76 26.76 0.00 6.86
2176 11447 1.632948 GGACAAGTTTAGGGTCGCGC 61.633 60.000 0.00 0.00 32.39 6.86
2177 11448 1.349259 CGGACAAGTTTAGGGTCGCG 61.349 60.000 0.00 0.00 32.39 5.87
2178 11449 0.037975 TCGGACAAGTTTAGGGTCGC 60.038 55.000 0.00 0.00 32.39 5.19
2179 11450 2.443887 TTCGGACAAGTTTAGGGTCG 57.556 50.000 0.00 0.00 32.39 4.79
2180 11451 4.576879 AGAATTCGGACAAGTTTAGGGTC 58.423 43.478 0.00 0.00 0.00 4.46
2181 11452 4.635699 AGAATTCGGACAAGTTTAGGGT 57.364 40.909 0.00 0.00 0.00 4.34
2182 11453 5.758784 GGATAGAATTCGGACAAGTTTAGGG 59.241 44.000 0.00 0.00 0.00 3.53
2183 11454 5.462398 CGGATAGAATTCGGACAAGTTTAGG 59.538 44.000 0.00 0.00 0.00 2.69
2184 11455 6.040878 ACGGATAGAATTCGGACAAGTTTAG 58.959 40.000 0.00 0.00 0.00 1.85
2185 11456 5.969423 ACGGATAGAATTCGGACAAGTTTA 58.031 37.500 0.00 0.00 0.00 2.01
2186 11457 4.828829 ACGGATAGAATTCGGACAAGTTT 58.171 39.130 0.00 0.00 0.00 2.66
2187 11458 4.467198 ACGGATAGAATTCGGACAAGTT 57.533 40.909 0.00 0.00 0.00 2.66
2188 11459 4.467198 AACGGATAGAATTCGGACAAGT 57.533 40.909 0.00 0.00 0.00 3.16
2189 11460 4.034048 CCAAACGGATAGAATTCGGACAAG 59.966 45.833 0.00 0.00 0.00 3.16
2190 11461 3.936453 CCAAACGGATAGAATTCGGACAA 59.064 43.478 0.00 0.00 0.00 3.18
2191 11462 3.527533 CCAAACGGATAGAATTCGGACA 58.472 45.455 0.00 0.00 0.00 4.02
2192 11463 2.870411 CCCAAACGGATAGAATTCGGAC 59.130 50.000 0.00 0.00 0.00 4.79
2193 11464 2.743838 GCCCAAACGGATAGAATTCGGA 60.744 50.000 0.00 0.00 0.00 4.55
2194 11465 1.602377 GCCCAAACGGATAGAATTCGG 59.398 52.381 0.00 0.00 0.00 4.30
2195 11466 2.285083 TGCCCAAACGGATAGAATTCG 58.715 47.619 0.00 0.00 0.00 3.34
2196 11467 2.618709 CCTGCCCAAACGGATAGAATTC 59.381 50.000 0.00 0.00 0.00 2.17
2197 11468 2.241176 TCCTGCCCAAACGGATAGAATT 59.759 45.455 0.00 0.00 0.00 2.17
2198 11469 1.843851 TCCTGCCCAAACGGATAGAAT 59.156 47.619 0.00 0.00 0.00 2.40
2199 11470 1.209504 CTCCTGCCCAAACGGATAGAA 59.790 52.381 0.00 0.00 0.00 2.10
2200 11471 0.830648 CTCCTGCCCAAACGGATAGA 59.169 55.000 0.00 0.00 0.00 1.98
2201 11472 0.179045 CCTCCTGCCCAAACGGATAG 60.179 60.000 0.00 0.00 0.00 2.08
2202 11473 0.619255 TCCTCCTGCCCAAACGGATA 60.619 55.000 0.00 0.00 0.00 2.59
2203 11474 1.281925 ATCCTCCTGCCCAAACGGAT 61.282 55.000 0.00 0.00 0.00 4.18
2204 11475 1.923395 ATCCTCCTGCCCAAACGGA 60.923 57.895 0.00 0.00 0.00 4.69
2205 11476 1.750399 CATCCTCCTGCCCAAACGG 60.750 63.158 0.00 0.00 0.00 4.44
2206 11477 1.750399 CCATCCTCCTGCCCAAACG 60.750 63.158 0.00 0.00 0.00 3.60
2207 11478 1.380380 CCCATCCTCCTGCCCAAAC 60.380 63.158 0.00 0.00 0.00 2.93
2208 11479 2.625460 CCCCATCCTCCTGCCCAAA 61.625 63.158 0.00 0.00 0.00 3.28
2209 11480 3.023116 CCCCATCCTCCTGCCCAA 61.023 66.667 0.00 0.00 0.00 4.12
2210 11481 4.369591 ACCCCATCCTCCTGCCCA 62.370 66.667 0.00 0.00 0.00 5.36
2211 11482 3.493303 GACCCCATCCTCCTGCCC 61.493 72.222 0.00 0.00 0.00 5.36
2212 11483 3.866582 CGACCCCATCCTCCTGCC 61.867 72.222 0.00 0.00 0.00 4.85
2213 11484 3.083997 ACGACCCCATCCTCCTGC 61.084 66.667 0.00 0.00 0.00 4.85
2214 11485 1.553690 AACACGACCCCATCCTCCTG 61.554 60.000 0.00 0.00 0.00 3.86
2215 11486 1.229529 AACACGACCCCATCCTCCT 60.230 57.895 0.00 0.00 0.00 3.69
2216 11487 1.221021 GAACACGACCCCATCCTCC 59.779 63.158 0.00 0.00 0.00 4.30
2217 11488 1.153628 CGAACACGACCCCATCCTC 60.154 63.158 0.00 0.00 0.00 3.71
2218 11489 2.656069 CCGAACACGACCCCATCCT 61.656 63.158 0.00 0.00 0.00 3.24
2219 11490 2.125269 CCGAACACGACCCCATCC 60.125 66.667 0.00 0.00 0.00 3.51
2220 11491 2.125269 CCCGAACACGACCCCATC 60.125 66.667 0.00 0.00 0.00 3.51
2221 11492 4.404098 GCCCGAACACGACCCCAT 62.404 66.667 0.00 0.00 0.00 4.00
2223 11494 4.404098 ATGCCCGAACACGACCCC 62.404 66.667 0.00 0.00 0.00 4.95
2224 11495 3.124921 CATGCCCGAACACGACCC 61.125 66.667 0.00 0.00 0.00 4.46
2225 11496 2.358247 ACATGCCCGAACACGACC 60.358 61.111 0.00 0.00 0.00 4.79
2226 11497 0.949105 AAGACATGCCCGAACACGAC 60.949 55.000 0.00 0.00 0.00 4.34
2227 11498 0.948623 CAAGACATGCCCGAACACGA 60.949 55.000 0.00 0.00 0.00 4.35
2228 11499 1.497278 CAAGACATGCCCGAACACG 59.503 57.895 0.00 0.00 0.00 4.49
2229 11500 1.586154 CCCAAGACATGCCCGAACAC 61.586 60.000 0.00 0.00 0.00 3.32
2230 11501 1.303236 CCCAAGACATGCCCGAACA 60.303 57.895 0.00 0.00 0.00 3.18
2231 11502 0.394352 ATCCCAAGACATGCCCGAAC 60.394 55.000 0.00 0.00 0.00 3.95
2232 11503 0.394216 CATCCCAAGACATGCCCGAA 60.394 55.000 0.00 0.00 0.00 4.30
2233 11504 1.224315 CATCCCAAGACATGCCCGA 59.776 57.895 0.00 0.00 0.00 5.14
2234 11505 2.484062 GCATCCCAAGACATGCCCG 61.484 63.158 0.00 0.00 39.70 6.13
2235 11506 2.484062 CGCATCCCAAGACATGCCC 61.484 63.158 0.00 0.00 42.15 5.36
2236 11507 2.484062 CCGCATCCCAAGACATGCC 61.484 63.158 0.00 0.00 42.15 4.40
2237 11508 1.750399 ACCGCATCCCAAGACATGC 60.750 57.895 0.00 0.00 41.79 4.06
2238 11509 1.378882 CCACCGCATCCCAAGACATG 61.379 60.000 0.00 0.00 0.00 3.21
2239 11510 1.077501 CCACCGCATCCCAAGACAT 60.078 57.895 0.00 0.00 0.00 3.06
2240 11511 2.350895 CCACCGCATCCCAAGACA 59.649 61.111 0.00 0.00 0.00 3.41
2241 11512 3.134127 GCCACCGCATCCCAAGAC 61.134 66.667 0.00 0.00 34.03 3.01
2242 11513 4.424711 GGCCACCGCATCCCAAGA 62.425 66.667 0.00 0.00 36.38 3.02
2272 11543 3.937062 GTAAAGGATGCGGCCGCG 61.937 66.667 41.73 12.29 45.51 6.46
2273 11544 3.583086 GGTAAAGGATGCGGCCGC 61.583 66.667 42.35 42.35 42.35 6.53
2274 11545 2.124901 TGGTAAAGGATGCGGCCG 60.125 61.111 24.05 24.05 0.00 6.13
2275 11546 0.751643 ATGTGGTAAAGGATGCGGCC 60.752 55.000 0.00 0.00 0.00 6.13
2276 11547 0.663153 GATGTGGTAAAGGATGCGGC 59.337 55.000 0.00 0.00 0.00 6.53
2277 11548 1.134098 AGGATGTGGTAAAGGATGCGG 60.134 52.381 0.00 0.00 0.00 5.69
2278 11549 1.942657 CAGGATGTGGTAAAGGATGCG 59.057 52.381 0.00 0.00 0.00 4.73
2292 11563 3.525537 ACAAATAGACGCAGACAGGATG 58.474 45.455 0.00 0.00 46.00 3.51
2293 11564 3.895232 ACAAATAGACGCAGACAGGAT 57.105 42.857 0.00 0.00 0.00 3.24
2294 11565 3.678056 AACAAATAGACGCAGACAGGA 57.322 42.857 0.00 0.00 0.00 3.86
2295 11566 5.856126 TTTAACAAATAGACGCAGACAGG 57.144 39.130 0.00 0.00 0.00 4.00
2317 11588 3.686726 TGGCATTTGAAACGTTGCTTTTT 59.313 34.783 8.00 0.00 35.46 1.94
2318 11589 3.265791 TGGCATTTGAAACGTTGCTTTT 58.734 36.364 8.00 0.00 35.46 2.27
2319 11590 2.898705 TGGCATTTGAAACGTTGCTTT 58.101 38.095 8.00 0.00 35.46 3.51
2320 11591 2.593346 TGGCATTTGAAACGTTGCTT 57.407 40.000 8.00 0.00 35.46 3.91
2321 11592 2.472816 CTTGGCATTTGAAACGTTGCT 58.527 42.857 8.00 0.00 35.46 3.91
2322 11593 1.070643 GCTTGGCATTTGAAACGTTGC 60.071 47.619 0.00 0.00 0.00 4.17
2323 11594 1.526464 GGCTTGGCATTTGAAACGTTG 59.474 47.619 0.00 0.00 0.00 4.10
2324 11595 1.412343 AGGCTTGGCATTTGAAACGTT 59.588 42.857 0.00 0.00 0.00 3.99
2325 11596 1.039856 AGGCTTGGCATTTGAAACGT 58.960 45.000 0.00 0.00 0.00 3.99
2326 11597 3.181397 CATAGGCTTGGCATTTGAAACG 58.819 45.455 0.00 0.00 0.00 3.60
2327 11598 3.055891 ACCATAGGCTTGGCATTTGAAAC 60.056 43.478 13.45 0.00 40.68 2.78
2328 11599 3.172339 ACCATAGGCTTGGCATTTGAAA 58.828 40.909 13.45 0.00 40.68 2.69
2329 11600 2.760092 GACCATAGGCTTGGCATTTGAA 59.240 45.455 13.45 0.00 40.68 2.69
2330 11601 2.378038 GACCATAGGCTTGGCATTTGA 58.622 47.619 13.45 0.00 40.68 2.69
2331 11602 1.410153 GGACCATAGGCTTGGCATTTG 59.590 52.381 13.45 0.00 40.68 2.32
2332 11603 1.689258 GGGACCATAGGCTTGGCATTT 60.689 52.381 13.45 0.00 40.68 2.32
2333 11604 0.106015 GGGACCATAGGCTTGGCATT 60.106 55.000 13.45 0.00 40.68 3.56
2334 11605 1.288508 TGGGACCATAGGCTTGGCAT 61.289 55.000 13.45 0.00 40.68 4.40
2335 11606 1.925285 CTGGGACCATAGGCTTGGCA 61.925 60.000 13.45 0.00 40.68 4.92
2336 11607 1.152881 CTGGGACCATAGGCTTGGC 60.153 63.158 13.45 7.99 40.68 4.52
2337 11608 0.625849 AACTGGGACCATAGGCTTGG 59.374 55.000 12.35 12.35 42.82 3.61
2338 11609 1.281867 TGAACTGGGACCATAGGCTTG 59.718 52.381 0.00 0.00 0.00 4.01
2339 11610 1.668826 TGAACTGGGACCATAGGCTT 58.331 50.000 0.00 0.00 0.00 4.35
2340 11611 1.771255 GATGAACTGGGACCATAGGCT 59.229 52.381 0.00 0.00 0.00 4.58
2341 11612 1.490490 TGATGAACTGGGACCATAGGC 59.510 52.381 0.00 0.00 0.00 3.93
2342 11613 2.483714 CGTGATGAACTGGGACCATAGG 60.484 54.545 0.00 0.00 0.00 2.57
2343 11614 2.826428 CGTGATGAACTGGGACCATAG 58.174 52.381 0.00 0.00 0.00 2.23
2344 11615 1.134521 GCGTGATGAACTGGGACCATA 60.135 52.381 0.00 0.00 0.00 2.74
2345 11616 0.392998 GCGTGATGAACTGGGACCAT 60.393 55.000 0.00 0.00 0.00 3.55
2346 11617 1.003839 GCGTGATGAACTGGGACCA 60.004 57.895 0.00 0.00 0.00 4.02
2347 11618 1.003839 TGCGTGATGAACTGGGACC 60.004 57.895 0.00 0.00 0.00 4.46
2348 11619 1.626654 CGTGCGTGATGAACTGGGAC 61.627 60.000 0.00 0.00 0.00 4.46
2349 11620 1.374125 CGTGCGTGATGAACTGGGA 60.374 57.895 0.00 0.00 0.00 4.37
2350 11621 3.027170 GCGTGCGTGATGAACTGGG 62.027 63.158 0.00 0.00 0.00 4.45
2351 11622 2.476051 GCGTGCGTGATGAACTGG 59.524 61.111 0.00 0.00 0.00 4.00
2352 11623 2.476051 GGCGTGCGTGATGAACTG 59.524 61.111 0.00 0.00 0.00 3.16
2353 11624 3.112075 CGGCGTGCGTGATGAACT 61.112 61.111 0.00 0.00 0.00 3.01
2354 11625 4.147322 CCGGCGTGCGTGATGAAC 62.147 66.667 6.01 0.00 0.00 3.18
2364 11635 4.999939 GGCTTTGTTGCCGGCGTG 63.000 66.667 23.90 8.78 43.74 5.34
2380 11651 4.814294 GGACGTGTAGGCCGCTGG 62.814 72.222 0.00 0.00 38.99 4.85
2386 11657 1.518572 CGGTGATGGACGTGTAGGC 60.519 63.158 0.00 0.00 0.00 3.93
2387 11658 1.141019 CCGGTGATGGACGTGTAGG 59.859 63.158 0.00 0.00 0.00 3.18
2388 11659 1.518572 GCCGGTGATGGACGTGTAG 60.519 63.158 1.90 0.00 0.00 2.74
2389 11660 1.609635 ATGCCGGTGATGGACGTGTA 61.610 55.000 1.90 0.00 0.00 2.90
2390 11661 2.852495 GATGCCGGTGATGGACGTGT 62.852 60.000 1.90 0.00 0.00 4.49
2391 11662 2.125147 ATGCCGGTGATGGACGTG 60.125 61.111 1.90 0.00 0.00 4.49
2392 11663 2.186903 GATGCCGGTGATGGACGT 59.813 61.111 1.90 0.00 0.00 4.34
2393 11664 1.884464 CTGATGCCGGTGATGGACG 60.884 63.158 1.90 0.00 0.00 4.79
2394 11665 2.182842 GCTGATGCCGGTGATGGAC 61.183 63.158 1.90 0.00 0.00 4.02
2395 11666 2.190313 GCTGATGCCGGTGATGGA 59.810 61.111 1.90 0.00 0.00 3.41
2413 11684 3.716006 CTGTGTTGCCGGTCGCTG 61.716 66.667 1.90 1.62 38.78 5.18
2422 11693 3.368571 GGAGGCTGGCTGTGTTGC 61.369 66.667 9.06 0.00 0.00 4.17
2423 11694 1.108727 TTTGGAGGCTGGCTGTGTTG 61.109 55.000 9.06 0.00 0.00 3.33
2424 11695 0.396974 TTTTGGAGGCTGGCTGTGTT 60.397 50.000 9.06 0.00 0.00 3.32
2425 11696 0.178953 ATTTTGGAGGCTGGCTGTGT 60.179 50.000 9.06 0.00 0.00 3.72
2426 11697 0.245539 CATTTTGGAGGCTGGCTGTG 59.754 55.000 9.06 0.00 0.00 3.66
2427 11698 0.112995 TCATTTTGGAGGCTGGCTGT 59.887 50.000 9.06 0.00 0.00 4.40
2428 11699 1.259609 TTCATTTTGGAGGCTGGCTG 58.740 50.000 9.06 0.00 0.00 4.85
2429 11700 1.829222 CATTCATTTTGGAGGCTGGCT 59.171 47.619 2.24 2.24 0.00 4.75
2430 11701 1.134610 CCATTCATTTTGGAGGCTGGC 60.135 52.381 0.00 0.00 36.26 4.85
2431 11702 2.181975 ACCATTCATTTTGGAGGCTGG 58.818 47.619 0.00 0.00 37.69 4.85
2432 11703 3.007182 ACAACCATTCATTTTGGAGGCTG 59.993 43.478 0.00 0.00 37.69 4.85
2433 11704 3.242011 ACAACCATTCATTTTGGAGGCT 58.758 40.909 0.00 0.00 37.69 4.58
2434 11705 3.588955 GACAACCATTCATTTTGGAGGC 58.411 45.455 0.00 0.00 37.69 4.70
2435 11706 3.834231 AGGACAACCATTCATTTTGGAGG 59.166 43.478 0.00 0.00 37.69 4.30
2436 11707 5.232463 CAAGGACAACCATTCATTTTGGAG 58.768 41.667 0.00 0.00 37.69 3.86
2437 11708 4.502950 GCAAGGACAACCATTCATTTTGGA 60.503 41.667 0.00 0.00 37.69 3.53
2438 11709 3.747529 GCAAGGACAACCATTCATTTTGG 59.252 43.478 0.00 0.00 40.26 3.28
2439 11710 3.747529 GGCAAGGACAACCATTCATTTTG 59.252 43.478 0.00 0.00 38.94 2.44
2440 11711 3.554752 CGGCAAGGACAACCATTCATTTT 60.555 43.478 0.00 0.00 38.94 1.82
2441 11712 2.029110 CGGCAAGGACAACCATTCATTT 60.029 45.455 0.00 0.00 38.94 2.32
2442 11713 1.545582 CGGCAAGGACAACCATTCATT 59.454 47.619 0.00 0.00 38.94 2.57
2443 11714 1.176527 CGGCAAGGACAACCATTCAT 58.823 50.000 0.00 0.00 38.94 2.57
2444 11715 0.893270 CCGGCAAGGACAACCATTCA 60.893 55.000 0.00 0.00 45.00 2.57
2445 11716 1.883021 CCGGCAAGGACAACCATTC 59.117 57.895 0.00 0.00 45.00 2.67
2446 11717 2.275380 GCCGGCAAGGACAACCATT 61.275 57.895 24.80 0.00 45.00 3.16
2447 11718 2.676471 GCCGGCAAGGACAACCAT 60.676 61.111 24.80 0.00 45.00 3.55
2448 11719 3.723097 TTGCCGGCAAGGACAACCA 62.723 57.895 37.30 13.21 45.00 3.67
2449 11720 2.909965 TTGCCGGCAAGGACAACC 60.910 61.111 37.30 0.00 45.00 3.77
2450 11721 2.335011 GTTGCCGGCAAGGACAAC 59.665 61.111 40.97 25.64 43.89 3.32
2451 11722 2.124109 TGTTGCCGGCAAGGACAA 60.124 55.556 40.97 21.22 45.00 3.18
2452 11723 2.904866 GTGTTGCCGGCAAGGACA 60.905 61.111 40.97 32.37 45.00 4.02
2453 11724 2.904866 TGTGTTGCCGGCAAGGAC 60.905 61.111 40.97 35.19 45.00 3.85
2454 11725 2.594303 CTGTGTTGCCGGCAAGGA 60.594 61.111 40.97 27.43 45.00 3.36
2455 11726 4.347453 GCTGTGTTGCCGGCAAGG 62.347 66.667 40.97 28.61 44.97 3.61
2456 11727 4.347453 GGCTGTGTTGCCGGCAAG 62.347 66.667 40.97 29.60 43.74 4.01
2481 11752 2.594592 AAGGCCGACTGTGTTGCC 60.595 61.111 0.00 4.19 44.35 4.52
2482 11753 1.444119 TTGAAGGCCGACTGTGTTGC 61.444 55.000 0.00 0.00 0.00 4.17
2483 11754 1.021202 TTTGAAGGCCGACTGTGTTG 58.979 50.000 0.00 0.00 0.00 3.33
2484 11755 1.757682 TTTTGAAGGCCGACTGTGTT 58.242 45.000 0.00 0.00 0.00 3.32
2485 11756 1.608590 CATTTTGAAGGCCGACTGTGT 59.391 47.619 0.00 0.00 0.00 3.72
2486 11757 1.879380 TCATTTTGAAGGCCGACTGTG 59.121 47.619 0.00 0.00 0.00 3.66
2487 11758 2.270352 TCATTTTGAAGGCCGACTGT 57.730 45.000 0.00 0.00 0.00 3.55
2488 11759 3.504863 CATTCATTTTGAAGGCCGACTG 58.495 45.455 0.00 0.00 40.05 3.51
2489 11760 2.493278 CCATTCATTTTGAAGGCCGACT 59.507 45.455 0.00 0.00 40.05 4.18
2490 11761 2.231235 ACCATTCATTTTGAAGGCCGAC 59.769 45.455 0.00 0.00 40.05 4.79
2491 11762 2.524306 ACCATTCATTTTGAAGGCCGA 58.476 42.857 0.00 0.00 40.05 5.54
2492 11763 3.317603 AACCATTCATTTTGAAGGCCG 57.682 42.857 0.00 0.00 40.05 6.13
2493 11764 5.308014 AGAAAACCATTCATTTTGAAGGCC 58.692 37.500 0.00 0.00 40.05 5.19
2494 11765 5.119125 CGAGAAAACCATTCATTTTGAAGGC 59.881 40.000 0.00 0.00 40.05 4.35
2495 11766 5.119125 GCGAGAAAACCATTCATTTTGAAGG 59.881 40.000 0.00 0.00 40.05 3.46
2496 11767 5.119125 GGCGAGAAAACCATTCATTTTGAAG 59.881 40.000 0.00 0.00 40.05 3.02
2497 11768 4.987912 GGCGAGAAAACCATTCATTTTGAA 59.012 37.500 0.00 0.00 41.09 2.69
2498 11769 4.555262 GGCGAGAAAACCATTCATTTTGA 58.445 39.130 0.00 0.00 29.44 2.69
2499 11770 3.364621 CGGCGAGAAAACCATTCATTTTG 59.635 43.478 0.00 0.00 29.44 2.44
2500 11771 3.574614 CGGCGAGAAAACCATTCATTTT 58.425 40.909 0.00 0.00 31.96 1.82
2501 11772 2.094752 CCGGCGAGAAAACCATTCATTT 60.095 45.455 9.30 0.00 0.00 2.32
2502 11773 1.472480 CCGGCGAGAAAACCATTCATT 59.528 47.619 9.30 0.00 0.00 2.57
2503 11774 1.094785 CCGGCGAGAAAACCATTCAT 58.905 50.000 9.30 0.00 0.00 2.57
2504 11775 1.582610 GCCGGCGAGAAAACCATTCA 61.583 55.000 12.58 0.00 0.00 2.57
2505 11776 1.136774 GCCGGCGAGAAAACCATTC 59.863 57.895 12.58 0.00 0.00 2.67
2506 11777 1.602323 TGCCGGCGAGAAAACCATT 60.602 52.632 23.90 0.00 0.00 3.16
2507 11778 2.033448 TGCCGGCGAGAAAACCAT 59.967 55.556 23.90 0.00 0.00 3.55
2508 11779 2.975799 GTGCCGGCGAGAAAACCA 60.976 61.111 23.90 0.00 0.00 3.67
2509 11780 2.975799 TGTGCCGGCGAGAAAACC 60.976 61.111 23.90 2.14 0.00 3.27
2510 11781 2.251371 GTGTGCCGGCGAGAAAAC 59.749 61.111 23.90 13.95 0.00 2.43
2511 11782 2.203084 TGTGTGCCGGCGAGAAAA 60.203 55.556 23.90 0.00 0.00 2.29
2512 11783 2.664851 CTGTGTGCCGGCGAGAAA 60.665 61.111 23.90 0.00 0.00 2.52
2553 11824 3.588817 TTGGAGGCTGGCATGGGTG 62.589 63.158 3.38 0.00 0.00 4.61
2554 11825 2.384933 TTTTGGAGGCTGGCATGGGT 62.385 55.000 3.38 0.00 0.00 4.51
2555 11826 1.193462 TTTTTGGAGGCTGGCATGGG 61.193 55.000 3.38 0.00 0.00 4.00
2556 11827 2.364353 TTTTTGGAGGCTGGCATGG 58.636 52.632 3.38 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.