AutoCloner

Multiple sequence alignment - TraesCS1B01G403100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G403100	chr1B	100.000	2997	0	0	1	2997	632750553	632753549	0.000000e+00	5535.0
1	TraesCS1B01G403100	chr1B	85.602	382	44	10	1617	1988	41449554	41449174	1.010000e-104	390.0
2	TraesCS1B01G403100	chr1B	85.993	307	15	11	1672	1953	41640782	41640479	1.350000e-78	303.0
3	TraesCS1B01G403100	chr1B	92.727	55	3	1	823	877	679045715	679045768	8.910000e-11	78.7
4	TraesCS1B01G403100	chr3B	96.396	2636	85	7	1	2634	569595741	569598368	0.000000e+00	4333.0
5	TraesCS1B01G403100	chr3B	90.088	1019	50	14	1981	2997	784575162	784574193	0.000000e+00	1275.0
6	TraesCS1B01G403100	chr3B	91.104	652	48	8	2	645	546383152	546382503	0.000000e+00	874.0
7	TraesCS1B01G403100	chr3B	97.283	368	10	0	2630	2997	569598329	569598696	2.540000e-175	625.0
8	TraesCS1B01G403100	chr3B	95.652	230	9	1	1266	1495	761169068	761169296	4.720000e-98	368.0
9	TraesCS1B01G403100	chr2D	91.712	1822	137	11	823	2634	229310596	229312413	0.000000e+00	2516.0
10	TraesCS1B01G403100	chr2D	95.368	367	17	0	2631	2997	229312375	229312741	4.310000e-163	584.0
11	TraesCS1B01G403100	chr2D	95.238	273	13	0	1266	1538	616177604	616177876	1.650000e-117	433.0
12	TraesCS1B01G403100	chr3A	95.579	1131	46	3	1505	2634	295950724	295949597	0.000000e+00	1808.0
13	TraesCS1B01G403100	chr3A	96.588	381	13	0	2249	2629	18663048	18662668	1.520000e-177	632.0
14	TraesCS1B01G403100	chr3A	95.380	368	17	0	2630	2997	295949636	295949269	1.200000e-163	586.0
15	TraesCS1B01G403100	chr3A	93.617	188	11	1	642	829	718581414	718581600	2.270000e-71	279.0
16	TraesCS1B01G403100	chr7A	95.406	1132	49	3	1505	2634	690659516	690660646	0.000000e+00	1799.0
17	TraesCS1B01G403100	chr7A	96.623	385	13	0	2249	2633	107343365	107342981	9.060000e-180	640.0
18	TraesCS1B01G403100	chr7A	95.652	368	16	0	2630	2997	690660607	690660974	2.570000e-165	592.0
19	TraesCS1B01G403100	chr5D	92.453	795	48	9	8	790	419927697	419926903	0.000000e+00	1125.0
20	TraesCS1B01G403100	chr5D	89.543	679	60	10	11	688	107314802	107314134	0.000000e+00	850.0
21	TraesCS1B01G403100	chr5D	88.079	151	14	3	2006	2153	563969914	563969765	3.070000e-40	176.0
22	TraesCS1B01G403100	chr2B	90.644	823	59	16	2	808	43956507	43957327	0.000000e+00	1077.0
23	TraesCS1B01G403100	chr2B	95.918	49	1	1	829	877	737205718	737205671	8.910000e-11	78.7
24	TraesCS1B01G403100	chr7D	92.369	747	49	8	3	742	7981334	7980589	0.000000e+00	1057.0
25	TraesCS1B01G403100	chr7D	89.676	494	27	6	929	1422	292418772	292419241	2.550000e-170	608.0
26	TraesCS1B01G403100	chr7D	95.402	87	4	0	1896	1982	292420101	292420187	4.030000e-29	139.0
27	TraesCS1B01G403100	chr7D	88.636	88	10	0	2152	2239	404156004	404156091	1.140000e-19	108.0
28	TraesCS1B01G403100	chr7D	97.059	34	1	0	829	862	292418744	292418777	1.160000e-04	58.4
29	TraesCS1B01G403100	chr6D	92.000	750	50	8	2	742	380600170	380599422	0.000000e+00	1044.0
30	TraesCS1B01G403100	chr6D	85.155	613	67	15	877	1475	467815803	467815201	9.190000e-170	606.0
31	TraesCS1B01G403100	chr6D	91.576	368	31	0	2630	2997	225663662	225663295	2.670000e-140	508.0
32	TraesCS1B01G403100	chr7B	89.112	845	49	20	2	829	128812103	128811285	0.000000e+00	1011.0
33	TraesCS1B01G403100	chr7B	89.941	676	56	11	13	688	680511233	680511896	0.000000e+00	861.0
34	TraesCS1B01G403100	chr7B	95.652	230	9	1	1266	1495	644284500	644284728	4.720000e-98	368.0
35	TraesCS1B01G403100	chr7B	92.308	52	3	1	826	877	123706668	123706718	4.140000e-09	73.1
36	TraesCS1B01G403100	chr7B	91.837	49	4	0	823	871	123706718	123706766	5.360000e-08	69.4
37	TraesCS1B01G403100	chr4B	90.191	785	61	9	11	780	565650525	565649742	0.000000e+00	1009.0
38	TraesCS1B01G403100	chr4B	94.677	620	33	0	1369	1988	342969376	342968757	0.000000e+00	963.0
39	TraesCS1B01G403100	chr4B	86.458	96	12	1	2152	2246	105711610	105711515	1.470000e-18	104.0
40	TraesCS1B01G403100	chr5A	88.763	792	78	9	2	790	690575453	690576236	0.000000e+00	959.0
41	TraesCS1B01G403100	chr5A	95.844	385	16	0	2249	2633	415814962	415814578	9.120000e-175	623.0
42	TraesCS1B01G403100	chr5A	88.095	84	10	0	2153	2236	427829161	427829078	1.900000e-17	100.0
43	TraesCS1B01G403100	chr1A	95.584	385	17	0	2249	2633	585606368	585605984	4.240000e-173	617.0
44	TraesCS1B01G403100	chr1A	96.949	295	9	0	2703	2997	577674751	577674457	2.080000e-136	496.0
45	TraesCS1B01G403100	chr1A	92.727	55	3	1	823	877	581589660	581589713	8.910000e-11	78.7
46	TraesCS1B01G403100	chr1D	91.935	372	25	3	1619	1988	25954045	25953677	1.590000e-142	516.0
47	TraesCS1B01G403100	chr1D	100.000	42	0	0	1941	1982	2852882	2852923	8.910000e-11	78.7
48	TraesCS1B01G403100	chr2A	96.949	295	9	0	2703	2997	94388626	94388332	2.080000e-136	496.0
49	TraesCS1B01G403100	chr2A	92.021	188	14	1	642	829	606699892	606699706	2.290000e-66	263.0
50	TraesCS1B01G403100	chr6B	95.932	295	12	0	2703	2997	713228549	713228255	2.090000e-131	479.0
51	TraesCS1B01G403100	chr6B	87.941	340	39	1	877	1214	713068026	713067687	1.670000e-107	399.0
52	TraesCS1B01G403100	chr6B	92.727	55	3	1	823	877	715134856	715134909	8.910000e-11	78.7
53	TraesCS1B01G403100	chrUn	95.971	273	11	0	1266	1538	21461973	21461701	7.620000e-121	444.0
54	TraesCS1B01G403100	chr6A	78.957	537	65	16	920	1436	613926799	613927307	3.730000e-84	322.0
55	TraesCS1B01G403100	chr6A	94.681	188	9	1	642	829	94578608	94578794	1.050000e-74	291.0
56	TraesCS1B01G403100	chr4D	86.458	96	12	1	2152	2246	72677934	72677839	1.470000e-18	104.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G403100	chr1B	632750553	632753549	2996	False	5535.000000	5535	100.000000	1	2997	1	chr1B.!!$F1	2996
1	TraesCS1B01G403100	chr3B	569595741	569598696	2955	False	2479.000000	4333	96.839500	1	2997	2	chr3B.!!$F2	2996
2	TraesCS1B01G403100	chr3B	784574193	784575162	969	True	1275.000000	1275	90.088000	1981	2997	1	chr3B.!!$R2	1016
3	TraesCS1B01G403100	chr3B	546382503	546383152	649	True	874.000000	874	91.104000	2	645	1	chr3B.!!$R1	643
4	TraesCS1B01G403100	chr2D	229310596	229312741	2145	False	1550.000000	2516	93.540000	823	2997	2	chr2D.!!$F2	2174
5	TraesCS1B01G403100	chr3A	295949269	295950724	1455	True	1197.000000	1808	95.479500	1505	2997	2	chr3A.!!$R2	1492
6	TraesCS1B01G403100	chr7A	690659516	690660974	1458	False	1195.500000	1799	95.529000	1505	2997	2	chr7A.!!$F1	1492
7	TraesCS1B01G403100	chr5D	419926903	419927697	794	True	1125.000000	1125	92.453000	8	790	1	chr5D.!!$R2	782
8	TraesCS1B01G403100	chr5D	107314134	107314802	668	True	850.000000	850	89.543000	11	688	1	chr5D.!!$R1	677
9	TraesCS1B01G403100	chr2B	43956507	43957327	820	False	1077.000000	1077	90.644000	2	808	1	chr2B.!!$F1	806
10	TraesCS1B01G403100	chr7D	7980589	7981334	745	True	1057.000000	1057	92.369000	3	742	1	chr7D.!!$R1	739
11	TraesCS1B01G403100	chr7D	292418744	292420187	1443	False	268.466667	608	94.045667	829	1982	3	chr7D.!!$F2	1153
12	TraesCS1B01G403100	chr6D	380599422	380600170	748	True	1044.000000	1044	92.000000	2	742	1	chr6D.!!$R2	740
13	TraesCS1B01G403100	chr6D	467815201	467815803	602	True	606.000000	606	85.155000	877	1475	1	chr6D.!!$R3	598
14	TraesCS1B01G403100	chr7B	128811285	128812103	818	True	1011.000000	1011	89.112000	2	829	1	chr7B.!!$R1	827
15	TraesCS1B01G403100	chr7B	680511233	680511896	663	False	861.000000	861	89.941000	13	688	1	chr7B.!!$F2	675
16	TraesCS1B01G403100	chr4B	565649742	565650525	783	True	1009.000000	1009	90.191000	11	780	1	chr4B.!!$R3	769
17	TraesCS1B01G403100	chr4B	342968757	342969376	619	True	963.000000	963	94.677000	1369	1988	1	chr4B.!!$R2	619
18	TraesCS1B01G403100	chr5A	690575453	690576236	783	False	959.000000	959	88.763000	2	790	1	chr5A.!!$F1	788
19	TraesCS1B01G403100	chr6A	613926799	613927307	508	False	322.000000	322	78.957000	920	1436	1	chr6A.!!$F2	516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
926	971	0.52847	CTTCGTCTTCTTCCCTCGCT	59.472	55.0	0.0	0.0	0.0	4.93	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2635	3276	1.023502	TGTTGTGGAGCATGTGTGTG	58.976	50.0	0.0	0.0	0.0	3.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
412	418	1.001974	GGTCCATAGGCATATCACGCA	59.998	52.381	0.00	0.00	0.00	5.24
418	424	2.160822	AGGCATATCACGCAGATCAC	57.839	50.000	0.00	0.00	38.19	3.06
499	505	0.781278	CCCAAACCCTAACTTCCCCA	59.219	55.000	0.00	0.00	0.00	4.96
659	701	2.461637	CCCTCCCCTCCCCTTCTT	59.538	66.667	0.00	0.00	0.00	2.52
782	825	3.813724	GTCCATGGCCTCCCCCAG	61.814	72.222	6.96	0.00	38.50	4.45
926	971	0.528470	CTTCGTCTTCTTCCCTCGCT	59.472	55.000	0.00	0.00	0.00	4.93
983	1039	2.029649	GCGGTAGACAACACCAGTTCTA	60.030	50.000	0.00	0.00	35.28	2.10
993	1049	1.221840	CCAGTTCTATGCAGGCGGT	59.778	57.895	0.00	0.00	0.00	5.68
1463	1561	3.507622	GCTGCCAAGTTCTTCAAGGTAAT	59.492	43.478	0.00	0.00	0.00	1.89
1569	1669	5.299028	ACATCTGTGTAAACAGTTCAATGCA	59.701	36.000	12.86	0.00	36.63	3.96
1706	2190	1.862201	CTTCGTCGCCAACAACTACAA	59.138	47.619	0.00	0.00	0.00	2.41
1759	2243	9.634163	CATCACAATTCTCTTTTCATCAATTCA	57.366	29.630	0.00	0.00	0.00	2.57
2009	2613	3.136763	CCAGTATAGAGTTCGGACGCTA	58.863	50.000	9.92	9.92	41.43	4.26
2158	2762	2.233922	ACCTTCTTGTCACATACTCCCG	59.766	50.000	0.00	0.00	0.00	5.14
2178	2782	3.495983	CCGCCATCCCACAATATAAGACA	60.496	47.826	0.00	0.00	0.00	3.41
2230	2834	4.283337	TGTCTTACATTATGGGACGGAGA	58.717	43.478	0.00	0.00	0.00	3.71
2386	2991	2.877097	ACATTATCTGTGTGGTGGCA	57.123	45.000	0.00	0.00	36.48	4.92
2627	3268	3.800628	GCTCCACAGCAAATCCAAC	57.199	52.632	0.00	0.00	46.06	3.77
2628	3269	1.251251	GCTCCACAGCAAATCCAACT	58.749	50.000	0.00	0.00	46.06	3.16
2629	3270	1.068055	GCTCCACAGCAAATCCAACTG	60.068	52.381	0.00	0.00	46.06	3.16
2630	3271	2.233271	CTCCACAGCAAATCCAACTGT	58.767	47.619	0.00	0.00	45.25	3.55
2631	3272	3.411446	CTCCACAGCAAATCCAACTGTA	58.589	45.455	0.00	0.00	42.59	2.74
2632	3273	4.012374	CTCCACAGCAAATCCAACTGTAT	58.988	43.478	0.00	0.00	42.59	2.29
2633	3274	4.406456	TCCACAGCAAATCCAACTGTATT	58.594	39.130	0.00	0.00	42.59	1.89
2634	3275	5.565509	TCCACAGCAAATCCAACTGTATTA	58.434	37.500	0.00	0.00	42.59	0.98
2635	3276	5.414454	TCCACAGCAAATCCAACTGTATTAC	59.586	40.000	0.00	0.00	42.59	1.89
2636	3277	5.182950	CCACAGCAAATCCAACTGTATTACA	59.817	40.000	0.00	0.00	42.59	2.41
2637	3278	6.086222	CACAGCAAATCCAACTGTATTACAC	58.914	40.000	0.00	0.00	42.59	2.90
2638	3279	5.767665	ACAGCAAATCCAACTGTATTACACA	59.232	36.000	0.00	0.00	42.65	3.72
2639	3280	6.086222	CAGCAAATCCAACTGTATTACACAC	58.914	40.000	0.00	0.00	32.33	3.82
2640	3281	5.767665	AGCAAATCCAACTGTATTACACACA	59.232	36.000	0.00	0.00	32.33	3.72
2641	3282	5.856455	GCAAATCCAACTGTATTACACACAC	59.144	40.000	0.00	0.00	32.33	3.82
2642	3283	6.514212	GCAAATCCAACTGTATTACACACACA	60.514	38.462	0.00	0.00	32.33	3.72
2643	3284	7.592938	CAAATCCAACTGTATTACACACACAT	58.407	34.615	0.00	0.00	32.33	3.21
2644	3285	6.741992	ATCCAACTGTATTACACACACATG	57.258	37.500	0.00	0.00	32.33	3.21
2645	3286	4.454161	TCCAACTGTATTACACACACATGC	59.546	41.667	0.00	0.00	32.33	4.06
2646	3287	4.455533	CCAACTGTATTACACACACATGCT	59.544	41.667	0.00	0.00	32.33	3.79
2647	3288	5.390885	CCAACTGTATTACACACACATGCTC	60.391	44.000	0.00	0.00	32.33	4.26
2648	3289	4.253685	ACTGTATTACACACACATGCTCC	58.746	43.478	0.00	0.00	32.33	4.70
2649	3290	4.252878	CTGTATTACACACACATGCTCCA	58.747	43.478	0.00	0.00	32.33	3.86
2650	3291	4.000325	TGTATTACACACACATGCTCCAC	59.000	43.478	0.00	0.00	30.04	4.02
2651	3292	2.629336	TTACACACACATGCTCCACA	57.371	45.000	0.00	0.00	0.00	4.17
2652	3293	2.629336	TACACACACATGCTCCACAA	57.371	45.000	0.00	0.00	0.00	3.33
2727	3368	6.474140	TGAGTCTAAGTGAGTGGTAAACAA	57.526	37.500	0.00	0.00	0.00	2.83
2843	3484	7.388776	CGATCTCCACATCCACAATATGTAAAT	59.611	37.037	0.00	0.00	35.82	1.40
2844	3485	9.725019	GATCTCCACATCCACAATATGTAAATA	57.275	33.333	0.00	0.00	35.82	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	3.340814	AGTTTCGATGCACCTCTCATT	57.659	42.857	0.00	0.00	0.00	2.57
379	385	0.394762	ATGGACCAATCACAGCGCAT	60.395	50.000	11.47	0.00	0.00	4.73
386	392	4.697352	GTGATATGCCTATGGACCAATCAC	59.303	45.833	14.40	14.40	36.36	3.06
412	418	1.347707	ACGGTGGTTGATGTGTGATCT	59.652	47.619	0.00	0.00	0.00	2.75
418	424	0.391130	ATCCGACGGTGGTTGATGTG	60.391	55.000	14.79	0.00	0.00	3.21
499	505	0.121197	TTGGGGGAGAGGAGTGGATT	59.879	55.000	0.00	0.00	0.00	3.01
603	636	2.359404	GGGAGAGGACGGAGGACA	59.641	66.667	0.00	0.00	0.00	4.02
782	825	1.764454	GAAGGGAGAGAGGAGGGCC	60.764	68.421	0.00	0.00	0.00	5.80
833	876	1.378250	CCTCGTACTCCTCCACGGT	60.378	63.158	0.00	0.00	38.66	4.83
983	1039	1.146930	ATCGAATCACCGCCTGCAT	59.853	52.632	0.00	0.00	0.00	3.96
993	1049	3.461061	GTCTGAAGCATCCATCGAATCA	58.539	45.455	0.00	0.00	0.00	2.57
1562	1662	6.825213	ACTATCAGCAGTTAGAATTGCATTGA	59.175	34.615	11.68	7.97	43.23	2.57
1569	1669	7.568349	TGGATGAACTATCAGCAGTTAGAATT	58.432	34.615	1.60	0.00	43.80	2.17
2009	2613	8.706322	ATGGACAGGTTTCAACTAGTTAAATT	57.294	30.769	8.04	1.25	0.00	1.82
2158	2762	6.040842	ACAAATGTCTTATATTGTGGGATGGC	59.959	38.462	0.00	0.00	34.88	4.40
2283	2887	1.067060	GAAACGAATATTGCCCCCTGC	59.933	52.381	0.00	0.00	41.77	4.85
2381	2986	2.484264	GTCATGAAACTACTGGTGCCAC	59.516	50.000	0.00	0.00	0.00	5.01
2386	2991	4.357918	AGCAAGTCATGAAACTACTGGT	57.642	40.909	0.00	0.00	0.00	4.00
2618	3259	6.964908	TGTGTGTGTAATACAGTTGGATTTG	58.035	36.000	0.00	0.00	39.15	2.32
2619	3260	7.592938	CATGTGTGTGTAATACAGTTGGATTT	58.407	34.615	0.00	0.00	39.15	2.17
2620	3261	6.349280	GCATGTGTGTGTAATACAGTTGGATT	60.349	38.462	0.00	0.00	39.15	3.01
2621	3262	5.123820	GCATGTGTGTGTAATACAGTTGGAT	59.876	40.000	0.00	0.00	39.15	3.41
2622	3263	4.454161	GCATGTGTGTGTAATACAGTTGGA	59.546	41.667	0.00	0.00	39.15	3.53
2623	3264	4.455533	AGCATGTGTGTGTAATACAGTTGG	59.544	41.667	0.00	0.00	39.15	3.77
2624	3265	5.390885	GGAGCATGTGTGTGTAATACAGTTG	60.391	44.000	0.00	0.00	39.15	3.16
2625	3266	4.695455	GGAGCATGTGTGTGTAATACAGTT	59.305	41.667	0.00	0.00	39.15	3.16
2626	3267	4.253685	GGAGCATGTGTGTGTAATACAGT	58.746	43.478	0.00	0.00	39.15	3.55
2627	3268	4.093408	GTGGAGCATGTGTGTGTAATACAG	59.907	45.833	0.00	0.00	39.15	2.74
2628	3269	4.000325	GTGGAGCATGTGTGTGTAATACA	59.000	43.478	0.00	0.00	34.76	2.29
2629	3270	4.000325	TGTGGAGCATGTGTGTGTAATAC	59.000	43.478	0.00	0.00	0.00	1.89
2630	3271	4.278975	TGTGGAGCATGTGTGTGTAATA	57.721	40.909	0.00	0.00	0.00	0.98
2631	3272	3.138884	TGTGGAGCATGTGTGTGTAAT	57.861	42.857	0.00	0.00	0.00	1.89
2632	3273	2.616376	GTTGTGGAGCATGTGTGTGTAA	59.384	45.455	0.00	0.00	0.00	2.41
2633	3274	2.217750	GTTGTGGAGCATGTGTGTGTA	58.782	47.619	0.00	0.00	0.00	2.90
2634	3275	1.024271	GTTGTGGAGCATGTGTGTGT	58.976	50.000	0.00	0.00	0.00	3.72
2635	3276	1.023502	TGTTGTGGAGCATGTGTGTG	58.976	50.000	0.00	0.00	0.00	3.82
2636	3277	1.761449	TTGTTGTGGAGCATGTGTGT	58.239	45.000	0.00	0.00	0.00	3.72
2637	3278	2.867287	TTTGTTGTGGAGCATGTGTG	57.133	45.000	0.00	0.00	0.00	3.82
2638	3279	2.297033	GGATTTGTTGTGGAGCATGTGT	59.703	45.455	0.00	0.00	0.00	3.72
2639	3280	2.296752	TGGATTTGTTGTGGAGCATGTG	59.703	45.455	0.00	0.00	0.00	3.21
2640	3281	2.596346	TGGATTTGTTGTGGAGCATGT	58.404	42.857	0.00	0.00	0.00	3.21
2641	3282	3.006110	AGTTGGATTTGTTGTGGAGCATG	59.994	43.478	0.00	0.00	0.00	4.06
2642	3283	3.006110	CAGTTGGATTTGTTGTGGAGCAT	59.994	43.478	0.00	0.00	0.00	3.79
2643	3284	2.361757	CAGTTGGATTTGTTGTGGAGCA	59.638	45.455	0.00	0.00	0.00	4.26
2644	3285	2.863704	GCAGTTGGATTTGTTGTGGAGC	60.864	50.000	0.00	0.00	0.00	4.70
2645	3286	2.361757	TGCAGTTGGATTTGTTGTGGAG	59.638	45.455	0.00	0.00	0.00	3.86
2646	3287	2.382882	TGCAGTTGGATTTGTTGTGGA	58.617	42.857	0.00	0.00	0.00	4.02
2647	3288	2.886862	TGCAGTTGGATTTGTTGTGG	57.113	45.000	0.00	0.00	0.00	4.17
2648	3289	4.624015	AGAATGCAGTTGGATTTGTTGTG	58.376	39.130	0.36	0.00	36.19	3.33
2649	3290	4.586001	AGAGAATGCAGTTGGATTTGTTGT	59.414	37.500	0.36	0.00	36.19	3.32
2650	3291	5.130292	AGAGAATGCAGTTGGATTTGTTG	57.870	39.130	0.36	0.00	36.19	3.33
2651	3292	5.069516	ACAAGAGAATGCAGTTGGATTTGTT	59.930	36.000	0.36	0.00	36.19	2.83
2652	3293	4.586001	ACAAGAGAATGCAGTTGGATTTGT	59.414	37.500	0.36	0.00	36.19	2.83
2727	3368	5.984695	TGATTAGCGTCCAAGCTCTATAT	57.015	39.130	0.00	0.00	45.67	0.86
2843	3484	7.835634	TCAGTGCAATATTAACGTTGACATA	57.164	32.000	11.99	5.16	0.00	2.29
2844	3485	6.735678	TCAGTGCAATATTAACGTTGACAT	57.264	33.333	11.99	0.00	0.00	3.06
2918	3559	6.650120	ACCCAAAGTTGTATAACGAGATCAT	58.350	36.000	0.00	0.00	41.71	2.45
2935	3576	9.410556	CAAACTATTAATTGACAGAACCCAAAG	57.589	33.333	3.83	0.00	0.00	2.77

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.