Multiple sequence alignment - TraesCS1B01G402800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G402800 chr1B 100.000 3338 0 0 1 3338 632635840 632632503 0.000000e+00 6165.0
1 TraesCS1B01G402800 chr1B 84.273 1507 198 19 920 2404 632650984 632649495 0.000000e+00 1434.0
2 TraesCS1B01G402800 chr1B 80.438 685 50 39 52 734 632651840 632651238 2.360000e-121 446.0
3 TraesCS1B01G402800 chr1B 87.931 58 6 1 756 812 632651124 632651067 2.150000e-07 67.6
4 TraesCS1B01G402800 chr1A 86.768 3363 231 65 89 3338 551681463 551678202 0.000000e+00 3548.0
5 TraesCS1B01G402800 chr1A 89.049 2566 193 43 1 2526 551681513 551678996 0.000000e+00 3101.0
6 TraesCS1B01G402800 chr1A 82.797 994 137 19 1431 2404 551736694 551735715 0.000000e+00 857.0
7 TraesCS1B01G402800 chr1A 89.276 373 39 1 920 1292 551737057 551736686 1.810000e-127 466.0
8 TraesCS1B01G402800 chr1A 83.643 269 22 14 497 755 551737472 551737216 2.000000e-57 233.0
9 TraesCS1B01G402800 chr1A 85.455 110 15 1 24 132 535485075 535485184 2.720000e-21 113.0
10 TraesCS1B01G402800 chr1A 89.796 49 4 1 755 802 551737202 551737154 1.000000e-05 62.1
11 TraesCS1B01G402800 chr7B 77.370 1445 220 65 957 2352 74299747 74301133 0.000000e+00 758.0
12 TraesCS1B01G402800 chr7B 95.067 223 11 0 600 822 727012706 727012928 5.300000e-93 351.0
13 TraesCS1B01G402800 chr7B 82.553 235 32 7 129 358 727011827 727012057 7.300000e-47 198.0
14 TraesCS1B01G402800 chr7D 81.509 676 87 21 958 1602 114817972 114818640 3.820000e-144 521.0
15 TraesCS1B01G402800 chr7D 79.368 475 79 13 1884 2344 114818898 114819367 1.930000e-82 316.0
16 TraesCS1B01G402800 chr7A 79.018 672 107 20 958 1602 119688688 119689352 2.380000e-116 429.0
17 TraesCS1B01G402800 chr7A 77.874 461 83 13 1885 2331 119689605 119690060 5.490000e-68 268.0
18 TraesCS1B01G402800 chr6A 77.603 509 100 11 1038 1542 437021250 437021748 2.520000e-76 296.0
19 TraesCS1B01G402800 chr6B 77.407 509 101 11 1038 1542 448668241 448667743 1.170000e-74 291.0
20 TraesCS1B01G402800 chr3A 86.617 269 22 8 488 755 734641255 734641000 5.450000e-73 285.0
21 TraesCS1B01G402800 chr6D 76.952 525 103 14 1024 1542 288541794 288541282 1.960000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G402800 chr1B 632632503 632635840 3337 True 6165.000 6165 100.0000 1 3338 1 chr1B.!!$R1 3337
1 TraesCS1B01G402800 chr1B 632649495 632651840 2345 True 649.200 1434 84.2140 52 2404 3 chr1B.!!$R2 2352
2 TraesCS1B01G402800 chr1A 551678202 551681513 3311 True 3324.500 3548 87.9085 1 3338 2 chr1A.!!$R1 3337
3 TraesCS1B01G402800 chr1A 551735715 551737472 1757 True 404.525 857 86.3780 497 2404 4 chr1A.!!$R2 1907
4 TraesCS1B01G402800 chr7B 74299747 74301133 1386 False 758.000 758 77.3700 957 2352 1 chr7B.!!$F1 1395
5 TraesCS1B01G402800 chr7B 727011827 727012928 1101 False 274.500 351 88.8100 129 822 2 chr7B.!!$F2 693
6 TraesCS1B01G402800 chr7D 114817972 114819367 1395 False 418.500 521 80.4385 958 2344 2 chr7D.!!$F1 1386
7 TraesCS1B01G402800 chr7A 119688688 119690060 1372 False 348.500 429 78.4460 958 2331 2 chr7A.!!$F1 1373
8 TraesCS1B01G402800 chr6D 288541282 288541794 512 True 283.000 283 76.9520 1024 1542 1 chr6D.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 1563 0.036306 AAGGTGTAGCCCAACGAAGG 59.964 55.0 0.0 0.0 35.24 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2777 3541 0.18135 GGATCTTGCATTCCTCGGGT 59.819 55.0 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 4.742649 TCCTCCAGCGCCGTCTCT 62.743 66.667 2.29 0.00 0.00 3.10
78 80 2.756283 CGCCGTCTCTCTCCCCTT 60.756 66.667 0.00 0.00 0.00 3.95
79 81 2.776913 CGCCGTCTCTCTCCCCTTC 61.777 68.421 0.00 0.00 0.00 3.46
82 84 1.758906 CGTCTCTCTCCCCTTCCCC 60.759 68.421 0.00 0.00 0.00 4.81
145 147 3.610669 CTCCGGCCTCCTCCATCG 61.611 72.222 0.00 0.00 0.00 3.84
155 157 2.185350 CTCCATCGTTCCAGCGCT 59.815 61.111 2.64 2.64 0.00 5.92
159 161 4.087892 ATCGTTCCAGCGCTGCCT 62.088 61.111 31.96 8.69 0.00 4.75
160 162 3.612247 ATCGTTCCAGCGCTGCCTT 62.612 57.895 31.96 9.59 0.00 4.35
208 210 2.936032 GCCACTCCAGACCCCCTT 60.936 66.667 0.00 0.00 0.00 3.95
364 387 4.154195 AGCAATACACAGAAAAAGGTAGCG 59.846 41.667 0.00 0.00 0.00 4.26
368 391 1.812571 CACAGAAAAAGGTAGCGGCAT 59.187 47.619 1.45 0.00 0.00 4.40
437 460 2.836981 AGAGTTCTCTACTGGCAGCAAT 59.163 45.455 15.89 0.00 37.17 3.56
554 1012 6.605594 TCATTTTGAAAAGGTTGGAGTACAGT 59.394 34.615 2.11 0.00 0.00 3.55
580 1039 5.834204 ACCCTGGAGACTGTGATTACTATAC 59.166 44.000 0.00 0.00 0.00 1.47
582 1041 5.048643 CCTGGAGACTGTGATTACTATACGG 60.049 48.000 0.00 0.00 0.00 4.02
586 1045 6.039047 GGAGACTGTGATTACTATACGGTTCA 59.961 42.308 0.00 0.00 34.29 3.18
595 1054 8.928733 TGATTACTATACGGTTCAGTTCAAAAC 58.071 33.333 0.47 0.00 0.00 2.43
597 1056 5.861727 ACTATACGGTTCAGTTCAAAACCT 58.138 37.500 3.08 0.00 42.29 3.50
600 1059 8.098912 ACTATACGGTTCAGTTCAAAACCTATT 58.901 33.333 3.08 0.00 42.29 1.73
739 1314 3.363970 GCTGTCCGTTGTTGTCACTAATG 60.364 47.826 0.00 0.00 0.00 1.90
824 1475 5.853936 TGTTTGTGAATGTAGCTACTGAGT 58.146 37.500 23.84 4.62 0.00 3.41
837 1488 4.655762 CTACTGAGTTGTAGCCTATGCA 57.344 45.455 0.00 0.00 41.13 3.96
838 1489 5.207110 CTACTGAGTTGTAGCCTATGCAT 57.793 43.478 3.79 3.79 41.13 3.96
839 1490 6.332735 CTACTGAGTTGTAGCCTATGCATA 57.667 41.667 6.20 6.20 41.13 3.14
840 1491 5.815233 ACTGAGTTGTAGCCTATGCATAT 57.185 39.130 6.92 0.00 41.13 1.78
841 1492 5.545588 ACTGAGTTGTAGCCTATGCATATG 58.454 41.667 6.92 5.71 41.13 1.78
842 1493 5.070981 ACTGAGTTGTAGCCTATGCATATGT 59.929 40.000 6.92 0.00 41.13 2.29
843 1494 5.928976 TGAGTTGTAGCCTATGCATATGTT 58.071 37.500 6.92 5.23 41.13 2.71
845 1496 6.260714 TGAGTTGTAGCCTATGCATATGTTTG 59.739 38.462 6.92 0.00 41.13 2.93
849 1500 5.527214 TGTAGCCTATGCATATGTTTGTGAC 59.473 40.000 6.92 0.00 41.13 3.67
862 1513 9.333497 CATATGTTTGTGACTGTCTTATTGTTG 57.667 33.333 9.51 0.00 0.00 3.33
868 1519 7.246674 TGTGACTGTCTTATTGTTGTCTTTC 57.753 36.000 9.51 0.00 0.00 2.62
884 1535 7.384115 TGTTGTCTTTCTATTGAAGGTCTTACG 59.616 37.037 0.00 0.00 33.28 3.18
892 1543 7.265673 TCTATTGAAGGTCTTACGAAATCAGG 58.734 38.462 0.00 0.00 0.00 3.86
900 1551 5.337009 GGTCTTACGAAATCAGGAAGGTGTA 60.337 44.000 0.00 0.00 0.00 2.90
908 1559 0.673644 CAGGAAGGTGTAGCCCAACG 60.674 60.000 0.00 0.00 35.24 4.10
912 1563 0.036306 AAGGTGTAGCCCAACGAAGG 59.964 55.000 0.00 0.00 35.24 3.46
942 1593 1.436195 GAAGTGACAGTGCCGCAACA 61.436 55.000 0.00 0.00 0.00 3.33
984 1635 2.280552 ACTGCGCCCGGAAGTCTTA 61.281 57.895 0.73 0.00 0.00 2.10
1021 1674 1.379710 TGCACACCACAAACAGCCT 60.380 52.632 0.00 0.00 0.00 4.58
1082 1735 2.179517 GACGGCCGACACTCTCAG 59.820 66.667 35.90 0.00 0.00 3.35
1331 1996 1.380403 ATCGGTGAGCTCGACCTCAG 61.380 60.000 23.96 14.04 42.14 3.35
1336 2001 2.036414 AGCTCGACCTCAGCAGGA 59.964 61.111 0.00 0.00 43.65 3.86
1626 2313 1.301716 GCACGAGGGCAAGAAGACA 60.302 57.895 0.00 0.00 0.00 3.41
1631 2318 0.739112 GAGGGCAAGAAGACAGCTCG 60.739 60.000 0.00 0.00 32.95 5.03
1758 2451 2.281139 TGCATCACCGGCGAACAA 60.281 55.556 9.30 0.00 0.00 2.83
1766 2459 0.533308 ACCGGCGAACAAACAAGCTA 60.533 50.000 9.30 0.00 0.00 3.32
1778 2471 5.519722 ACAAACAAGCTATTTCTTTGACCG 58.480 37.500 0.00 0.00 0.00 4.79
1822 2515 1.900498 GCCAGCAAGCTTCAGTGGT 60.900 57.895 16.16 1.61 0.00 4.16
1839 2532 2.832661 TTGGCAAGCACCAACGCT 60.833 55.556 0.00 0.00 44.80 5.07
1862 2555 3.064324 GGCGGTCAAGGCATGCTT 61.064 61.111 18.92 7.19 36.61 3.91
1881 2574 4.277174 TGCTTACCGAAAGATGCTTTTTCA 59.723 37.500 2.10 0.00 37.38 2.69
1940 2633 0.534203 GTTGTGTGGTCATGGTCCGT 60.534 55.000 0.00 0.00 0.00 4.69
1959 2655 2.512896 GGCAGCCGGAGATTGGAT 59.487 61.111 5.05 0.00 0.00 3.41
1964 2660 2.368439 CAGCCGGAGATTGGATGAAAA 58.632 47.619 5.05 0.00 45.67 2.29
1967 2663 2.368439 CCGGAGATTGGATGAAAAGCA 58.632 47.619 0.00 0.00 0.00 3.91
2103 2805 1.599606 ATCAGAGCAAGGCGACGACT 61.600 55.000 0.00 0.00 0.00 4.18
2108 2810 2.490217 CAAGGCGACGACTCCGAT 59.510 61.111 2.24 0.00 39.50 4.18
2109 2811 1.725665 CAAGGCGACGACTCCGATA 59.274 57.895 2.24 0.00 39.50 2.92
2136 2844 4.704833 AAGCTCGCCGTGCATGGT 62.705 61.111 25.67 2.76 0.00 3.55
2405 3121 0.107703 TTGGATAGTGAGCCGGCTTG 60.108 55.000 33.34 0.00 31.83 4.01
2495 3235 6.865834 AGATGAACTGAGGTAAGATGAAGT 57.134 37.500 0.00 0.00 0.00 3.01
2513 3253 5.507077 TGAAGTGTTTAATTTGAGTCGCAC 58.493 37.500 0.00 0.00 0.00 5.34
2514 3254 4.483476 AGTGTTTAATTTGAGTCGCACC 57.517 40.909 0.00 0.00 0.00 5.01
2515 3255 4.134563 AGTGTTTAATTTGAGTCGCACCT 58.865 39.130 0.00 0.00 0.00 4.00
2516 3256 4.024048 AGTGTTTAATTTGAGTCGCACCTG 60.024 41.667 0.00 0.00 0.00 4.00
2517 3257 3.234386 GTTTAATTTGAGTCGCACCTGC 58.766 45.455 0.00 0.00 37.78 4.85
2518 3258 2.472695 TAATTTGAGTCGCACCTGCT 57.527 45.000 0.00 0.00 39.32 4.24
2519 3259 1.609208 AATTTGAGTCGCACCTGCTT 58.391 45.000 0.00 0.00 39.32 3.91
2520 3260 2.472695 ATTTGAGTCGCACCTGCTTA 57.527 45.000 0.00 0.00 39.32 3.09
2521 3261 2.248280 TTTGAGTCGCACCTGCTTAA 57.752 45.000 0.00 0.00 39.32 1.85
2522 3262 2.472695 TTGAGTCGCACCTGCTTAAT 57.527 45.000 0.00 0.00 39.32 1.40
2523 3263 2.472695 TGAGTCGCACCTGCTTAATT 57.527 45.000 0.00 0.00 39.32 1.40
2524 3264 3.603158 TGAGTCGCACCTGCTTAATTA 57.397 42.857 0.00 0.00 39.32 1.40
2525 3265 3.521560 TGAGTCGCACCTGCTTAATTAG 58.478 45.455 0.00 0.00 39.32 1.73
2526 3266 3.056107 TGAGTCGCACCTGCTTAATTAGT 60.056 43.478 0.00 0.00 39.32 2.24
2527 3267 3.933332 GAGTCGCACCTGCTTAATTAGTT 59.067 43.478 0.00 0.00 39.32 2.24
2528 3268 4.324267 AGTCGCACCTGCTTAATTAGTTT 58.676 39.130 0.00 0.00 39.32 2.66
2529 3269 4.760204 AGTCGCACCTGCTTAATTAGTTTT 59.240 37.500 0.00 0.00 39.32 2.43
2530 3270 5.240844 AGTCGCACCTGCTTAATTAGTTTTT 59.759 36.000 0.00 0.00 39.32 1.94
2564 3304 7.862675 ACCTGCTTAATTAGATTAACTGAGGT 58.137 34.615 0.00 0.00 32.72 3.85
2593 3333 0.321671 GTAGACCTCACTTGCCAGCA 59.678 55.000 0.00 0.00 0.00 4.41
2608 3348 2.704065 GCCAGCACTCCCCTATAACTTA 59.296 50.000 0.00 0.00 0.00 2.24
2614 3354 4.104261 GCACTCCCCTATAACTTATGGGTT 59.896 45.833 9.66 0.00 38.03 4.11
2657 3421 8.533569 AATTAAATTAGGATTTGATCACCCGT 57.466 30.769 0.00 0.00 36.22 5.28
2661 3425 1.909302 AGGATTTGATCACCCGTGAGT 59.091 47.619 0.00 0.00 43.61 3.41
2700 3464 9.095065 GCTTCTAATTTTATTCTCCGTTACTGA 57.905 33.333 0.00 0.00 0.00 3.41
2713 3477 5.513233 TCCGTTACTGAATACTAGGACCTT 58.487 41.667 0.00 0.00 0.00 3.50
2756 3520 8.846607 GTTATAACAAAATCAAAGTTGGTAGCG 58.153 33.333 10.81 0.00 30.76 4.26
2758 3522 6.380095 AACAAAATCAAAGTTGGTAGCGTA 57.620 33.333 0.00 0.00 0.00 4.42
2759 3523 5.754778 ACAAAATCAAAGTTGGTAGCGTAC 58.245 37.500 0.00 0.00 0.00 3.67
2760 3524 5.529800 ACAAAATCAAAGTTGGTAGCGTACT 59.470 36.000 0.00 0.00 0.00 2.73
2761 3525 6.038936 ACAAAATCAAAGTTGGTAGCGTACTT 59.961 34.615 6.46 6.46 33.76 2.24
2763 3527 2.803956 TCAAAGTTGGTAGCGTACTTGC 59.196 45.455 11.51 0.00 32.76 4.01
2765 3529 2.080286 AGTTGGTAGCGTACTTGCTG 57.920 50.000 5.61 0.00 46.70 4.41
2766 3530 0.442699 GTTGGTAGCGTACTTGCTGC 59.557 55.000 5.61 4.21 46.70 5.25
2770 3534 2.721129 GTAGCGTACTTGCTGCATTC 57.279 50.000 1.84 0.00 46.70 2.67
2771 3535 1.999735 GTAGCGTACTTGCTGCATTCA 59.000 47.619 1.84 0.00 46.70 2.57
2772 3536 1.522668 AGCGTACTTGCTGCATTCAA 58.477 45.000 1.84 0.00 45.28 2.69
2773 3537 1.466167 AGCGTACTTGCTGCATTCAAG 59.534 47.619 20.68 20.68 45.28 3.02
2774 3538 1.464608 GCGTACTTGCTGCATTCAAGA 59.535 47.619 26.06 12.96 42.52 3.02
2775 3539 2.726066 GCGTACTTGCTGCATTCAAGAC 60.726 50.000 26.06 19.44 42.52 3.01
2776 3540 2.738846 CGTACTTGCTGCATTCAAGACT 59.261 45.455 26.06 13.29 42.52 3.24
2777 3541 3.926527 CGTACTTGCTGCATTCAAGACTA 59.073 43.478 26.06 12.55 42.52 2.59
2778 3542 4.201628 CGTACTTGCTGCATTCAAGACTAC 60.202 45.833 26.06 19.25 42.52 2.73
2779 3543 3.077359 ACTTGCTGCATTCAAGACTACC 58.923 45.455 26.06 0.00 42.52 3.18
2780 3544 2.113860 TGCTGCATTCAAGACTACCC 57.886 50.000 0.00 0.00 0.00 3.69
2781 3545 1.009829 GCTGCATTCAAGACTACCCG 58.990 55.000 0.00 0.00 0.00 5.28
2782 3546 1.405526 GCTGCATTCAAGACTACCCGA 60.406 52.381 0.00 0.00 0.00 5.14
2783 3547 2.544685 CTGCATTCAAGACTACCCGAG 58.455 52.381 0.00 0.00 0.00 4.63
2784 3548 1.207089 TGCATTCAAGACTACCCGAGG 59.793 52.381 0.00 0.00 0.00 4.63
2815 3579 2.965831 TCCTGTCAATATCTCCCCTTCG 59.034 50.000 0.00 0.00 0.00 3.79
2841 3605 5.826208 GGACTCTTTCACCTGGTCTTTTAAA 59.174 40.000 0.00 0.00 0.00 1.52
2843 3607 5.828328 ACTCTTTCACCTGGTCTTTTAAAGG 59.172 40.000 4.77 0.00 35.82 3.11
2858 3622 2.834638 AAAGGGCAAGCAGGTATCAT 57.165 45.000 0.00 0.00 0.00 2.45
2884 3648 6.126796 TGCACAGATCAAGGGACTGATTTATA 60.127 38.462 0.00 0.00 40.86 0.98
2896 3660 8.885346 AGGGACTGATTTATATTCCTTAGAAGG 58.115 37.037 1.53 1.53 42.96 3.46
3022 3786 6.043243 ACCTGGATATAGTCACAATCCGAATT 59.957 38.462 0.00 0.00 41.81 2.17
3034 3798 4.156008 ACAATCCGAATTAAGACCTTGCAC 59.844 41.667 0.00 0.00 0.00 4.57
3072 3854 4.870363 TGAAAACAGCTCCACTAATTTGC 58.130 39.130 0.00 0.00 0.00 3.68
3090 3872 1.709147 GCTGGGCACACAATAGCTCG 61.709 60.000 0.00 0.00 32.70 5.03
3091 3873 1.078497 TGGGCACACAATAGCTCGG 60.078 57.895 0.00 0.00 32.70 4.63
3092 3874 2.472909 GGGCACACAATAGCTCGGC 61.473 63.158 0.00 0.00 0.00 5.54
3093 3875 1.745115 GGCACACAATAGCTCGGCA 60.745 57.895 0.00 0.00 0.00 5.69
3094 3876 1.709147 GGCACACAATAGCTCGGCAG 61.709 60.000 0.00 0.00 0.00 4.85
3095 3877 0.740868 GCACACAATAGCTCGGCAGA 60.741 55.000 0.00 0.00 0.00 4.26
3096 3878 1.945387 CACACAATAGCTCGGCAGAT 58.055 50.000 0.00 0.00 0.00 2.90
3097 3879 2.803133 GCACACAATAGCTCGGCAGATA 60.803 50.000 0.00 0.00 0.00 1.98
3098 3880 3.055591 CACACAATAGCTCGGCAGATAG 58.944 50.000 0.00 0.00 0.00 2.08
3099 3881 2.036475 ACACAATAGCTCGGCAGATAGG 59.964 50.000 0.00 0.00 0.00 2.57
3100 3882 2.036475 CACAATAGCTCGGCAGATAGGT 59.964 50.000 0.00 0.00 0.00 3.08
3102 3884 3.062763 CAATAGCTCGGCAGATAGGTTG 58.937 50.000 0.00 0.00 0.00 3.77
3103 3885 2.067365 TAGCTCGGCAGATAGGTTGA 57.933 50.000 0.00 0.00 0.00 3.18
3104 3886 1.195115 AGCTCGGCAGATAGGTTGAA 58.805 50.000 0.00 0.00 0.00 2.69
3105 3887 1.134670 AGCTCGGCAGATAGGTTGAAC 60.135 52.381 0.00 0.00 0.00 3.18
3109 3891 2.565391 TCGGCAGATAGGTTGAACTGAA 59.435 45.455 0.00 0.00 32.90 3.02
3111 3893 4.404394 TCGGCAGATAGGTTGAACTGAATA 59.596 41.667 0.00 0.00 32.90 1.75
3112 3894 5.105106 TCGGCAGATAGGTTGAACTGAATAA 60.105 40.000 0.00 0.00 32.90 1.40
3119 3906 9.751542 AGATAGGTTGAACTGAATAATTAGACG 57.248 33.333 0.00 0.00 0.00 4.18
3123 3910 7.336931 AGGTTGAACTGAATAATTAGACGCAAT 59.663 33.333 0.00 0.00 0.00 3.56
3132 3919 2.772077 TTAGACGCAATGGGTAGCAA 57.228 45.000 2.07 0.00 0.00 3.91
3143 3930 7.283580 ACGCAATGGGTAGCAACTTTTATATTA 59.716 33.333 0.00 0.00 0.00 0.98
3151 3938 7.172703 GGTAGCAACTTTTATATTATCAGCCGT 59.827 37.037 0.00 0.00 0.00 5.68
3152 3939 6.959361 AGCAACTTTTATATTATCAGCCGTG 58.041 36.000 0.00 0.00 0.00 4.94
3153 3940 6.017109 AGCAACTTTTATATTATCAGCCGTGG 60.017 38.462 0.00 0.00 0.00 4.94
3154 3941 6.668323 CAACTTTTATATTATCAGCCGTGGG 58.332 40.000 0.00 0.00 0.00 4.61
3165 3952 4.557554 CCGTGGGCATCAATAGCA 57.442 55.556 0.00 0.00 0.00 3.49
3166 3953 3.025924 CCGTGGGCATCAATAGCAT 57.974 52.632 0.00 0.00 0.00 3.79
3167 3954 2.183478 CCGTGGGCATCAATAGCATA 57.817 50.000 0.00 0.00 0.00 3.14
3168 3955 1.806542 CCGTGGGCATCAATAGCATAC 59.193 52.381 0.00 0.00 0.00 2.39
3169 3956 1.806542 CGTGGGCATCAATAGCATACC 59.193 52.381 0.00 0.00 0.00 2.73
3170 3957 2.550855 CGTGGGCATCAATAGCATACCT 60.551 50.000 0.00 0.00 0.00 3.08
3171 3958 3.077359 GTGGGCATCAATAGCATACCTC 58.923 50.000 0.00 0.00 0.00 3.85
3172 3959 2.981784 TGGGCATCAATAGCATACCTCT 59.018 45.455 0.00 0.00 0.00 3.69
3179 3966 6.370166 GCATCAATAGCATACCTCTAAGGAAC 59.630 42.308 0.00 0.00 37.67 3.62
3193 3980 7.070571 ACCTCTAAGGAACTGATATCCAAGAAG 59.929 40.741 0.00 0.00 40.86 2.85
3197 3984 4.164988 AGGAACTGATATCCAAGAAGGTGG 59.835 45.833 0.00 0.00 39.55 4.61
3209 3996 3.464720 AGAAGGTGGAGTCTCATCTGA 57.535 47.619 1.47 0.00 0.00 3.27
3213 4000 4.323569 AGGTGGAGTCTCATCTGACTTA 57.676 45.455 1.47 0.00 46.11 2.24
3214 4001 4.678256 AGGTGGAGTCTCATCTGACTTAA 58.322 43.478 1.47 0.00 46.11 1.85
3215 4002 5.276440 AGGTGGAGTCTCATCTGACTTAAT 58.724 41.667 1.47 0.00 46.11 1.40
3217 4004 7.072562 AGGTGGAGTCTCATCTGACTTAATAT 58.927 38.462 1.47 0.00 46.11 1.28
3218 4005 7.015098 AGGTGGAGTCTCATCTGACTTAATATG 59.985 40.741 1.47 0.00 46.11 1.78
3237 4024 9.531942 TTAATATGCATTGAAACATTGACATCC 57.468 29.630 3.54 0.00 0.00 3.51
3259 4053 3.221771 CCAATGTCAGAAACCCACTGAA 58.778 45.455 0.00 0.00 44.29 3.02
3263 4057 3.013921 TGTCAGAAACCCACTGAACAAC 58.986 45.455 0.00 0.00 44.29 3.32
3277 4071 2.875317 TGAACAACTGCATAACGCTCAA 59.125 40.909 0.00 0.00 43.06 3.02
3307 4101 0.036388 GGGCGTCAATTCAGGAGACA 60.036 55.000 0.00 0.00 32.68 3.41
3316 4110 2.561733 TTCAGGAGACATAAGACGCG 57.438 50.000 3.53 3.53 0.00 6.01
3324 4118 3.499048 AGACATAAGACGCGTGTTAGTG 58.501 45.455 29.00 25.90 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 1.758906 GGGAAGGGGAGAGAGACGG 60.759 68.421 0.00 0.00 0.00 4.79
70 72 2.787866 CTGGAGGGGAAGGGGAGA 59.212 66.667 0.00 0.00 0.00 3.71
77 79 2.610859 GGAGTGGCTGGAGGGGAA 60.611 66.667 0.00 0.00 0.00 3.97
78 80 3.931631 CTGGAGTGGCTGGAGGGGA 62.932 68.421 0.00 0.00 0.00 4.81
79 81 3.406200 CTGGAGTGGCTGGAGGGG 61.406 72.222 0.00 0.00 0.00 4.79
132 134 2.317149 CTGGAACGATGGAGGAGGCC 62.317 65.000 0.00 0.00 0.00 5.19
139 141 2.125552 CAGCGCTGGAACGATGGA 60.126 61.111 29.88 0.00 45.19 3.41
145 147 2.970974 GACAAGGCAGCGCTGGAAC 61.971 63.158 36.47 20.99 0.00 3.62
155 157 2.338620 CTGGACGTCGACAAGGCA 59.661 61.111 17.16 0.00 0.00 4.75
208 210 1.367471 CTGGAGTTGCTGGACGTCA 59.633 57.895 18.91 2.63 0.00 4.35
364 387 4.757149 ACTGAAAGAAGTGTACAAGATGCC 59.243 41.667 0.00 0.00 37.43 4.40
368 391 5.508489 CCCGTACTGAAAGAAGTGTACAAGA 60.508 44.000 0.00 0.00 37.43 3.02
437 460 9.237187 TGCATCTTATTACTAAACAATGACCAA 57.763 29.630 0.00 0.00 0.00 3.67
472 732 3.758554 AGTGTCAATAATGGACAGCAACC 59.241 43.478 0.00 0.00 45.21 3.77
531 946 8.410912 GTTACTGTACTCCAACCTTTTCAAAAT 58.589 33.333 0.00 0.00 0.00 1.82
542 1000 2.901839 TCCAGGGTTACTGTACTCCAAC 59.098 50.000 9.44 0.00 46.06 3.77
554 1012 4.684724 AGTAATCACAGTCTCCAGGGTTA 58.315 43.478 0.00 0.00 0.00 2.85
595 1054 7.502226 TGCACTGGGATCATAAAACTAAATAGG 59.498 37.037 0.00 0.00 0.00 2.57
597 1056 8.815565 TTGCACTGGGATCATAAAACTAAATA 57.184 30.769 0.00 0.00 0.00 1.40
600 1059 6.152661 CCTTTGCACTGGGATCATAAAACTAA 59.847 38.462 0.00 0.00 0.00 2.24
824 1475 6.038161 GTCACAAACATATGCATAGGCTACAA 59.962 38.462 17.87 0.00 41.91 2.41
831 1482 6.915544 AGACAGTCACAAACATATGCATAG 57.084 37.500 12.79 7.04 0.00 2.23
836 1487 9.333497 CAACAATAAGACAGTCACAAACATATG 57.667 33.333 2.66 0.00 0.00 1.78
837 1488 9.066892 ACAACAATAAGACAGTCACAAACATAT 57.933 29.630 2.66 0.00 0.00 1.78
838 1489 8.445275 ACAACAATAAGACAGTCACAAACATA 57.555 30.769 2.66 0.00 0.00 2.29
839 1490 7.283127 AGACAACAATAAGACAGTCACAAACAT 59.717 33.333 2.66 0.00 0.00 2.71
840 1491 6.597672 AGACAACAATAAGACAGTCACAAACA 59.402 34.615 2.66 0.00 0.00 2.83
841 1492 7.016361 AGACAACAATAAGACAGTCACAAAC 57.984 36.000 2.66 0.00 0.00 2.93
842 1493 7.624360 AAGACAACAATAAGACAGTCACAAA 57.376 32.000 2.66 0.00 0.00 2.83
843 1494 7.552687 AGAAAGACAACAATAAGACAGTCACAA 59.447 33.333 2.66 0.00 0.00 3.33
845 1496 7.484035 AGAAAGACAACAATAAGACAGTCAC 57.516 36.000 2.66 0.00 0.00 3.67
884 1535 2.026262 TGGGCTACACCTTCCTGATTTC 60.026 50.000 0.00 0.00 39.10 2.17
892 1543 1.439679 CTTCGTTGGGCTACACCTTC 58.560 55.000 0.00 0.00 39.10 3.46
908 1559 3.003793 GTCACTTCTCAAACTTGGCCTTC 59.996 47.826 3.32 0.00 0.00 3.46
912 1563 2.945668 ACTGTCACTTCTCAAACTTGGC 59.054 45.455 0.00 0.00 0.00 4.52
914 1565 3.242870 GGCACTGTCACTTCTCAAACTTG 60.243 47.826 0.00 0.00 0.00 3.16
942 1593 2.867109 CTGTCAATGGAGAGGGTTGT 57.133 50.000 0.00 0.00 31.02 3.32
973 1624 3.187700 GCTGTGTGTATAAGACTTCCGG 58.812 50.000 0.00 0.00 0.00 5.14
984 1635 1.451927 CATGGCCGGCTGTGTGTAT 60.452 57.895 28.56 6.79 0.00 2.29
1008 1661 2.113139 CCGGAGGCTGTTTGTGGT 59.887 61.111 0.00 0.00 46.14 4.16
1266 1931 2.843352 GCCGTAGTAGGACGCCTCC 61.843 68.421 1.46 0.00 41.56 4.30
1306 1971 2.492090 GAGCTCACCGATGCGAGT 59.508 61.111 9.40 0.00 0.00 4.18
1548 2228 2.677524 AATGCTGCCATGCCACGT 60.678 55.556 0.00 0.00 0.00 4.49
1626 2313 0.947180 TCGCGTTAAAAAGCCGAGCT 60.947 50.000 5.77 0.00 42.56 4.09
1631 2318 1.154093 GCCCTCGCGTTAAAAAGCC 60.154 57.895 5.77 0.00 0.00 4.35
1758 2451 4.394729 TCCGGTCAAAGAAATAGCTTGTT 58.605 39.130 0.00 0.00 0.00 2.83
1766 2459 3.992427 GACGTACTTCCGGTCAAAGAAAT 59.008 43.478 8.29 0.00 0.00 2.17
1778 2471 2.005451 TCAGAGCGTAGACGTACTTCC 58.995 52.381 3.73 0.00 42.22 3.46
1822 2515 2.832661 AGCGTTGGTGCTTGCCAA 60.833 55.556 4.31 4.31 44.46 4.52
1839 2532 1.913951 ATGCCTTGACCGCCATGAGA 61.914 55.000 0.00 0.00 0.00 3.27
1862 2555 3.187637 CGGTGAAAAAGCATCTTTCGGTA 59.812 43.478 0.00 0.00 35.88 4.02
1881 2574 0.898320 CCAGAGTGATGGAAGACGGT 59.102 55.000 0.00 0.00 43.57 4.83
1955 2651 1.067706 CGGCAACATGCTTTTCATCCA 60.068 47.619 2.00 0.00 44.28 3.41
1959 2655 1.669502 GCATCGGCAACATGCTTTTCA 60.670 47.619 2.00 0.00 44.28 2.69
1964 2660 3.511595 CGGCATCGGCAACATGCT 61.512 61.111 12.04 0.00 44.93 3.79
1967 2663 3.195002 CGACGGCATCGGCAACAT 61.195 61.111 0.00 0.00 46.65 2.71
2103 2805 2.423892 GAGCTTCGGATAGCATATCGGA 59.576 50.000 12.45 3.68 43.68 4.55
2108 2810 0.243907 GGCGAGCTTCGGATAGCATA 59.756 55.000 12.45 0.00 43.68 3.14
2109 2811 1.005630 GGCGAGCTTCGGATAGCAT 60.006 57.895 12.45 1.59 43.68 3.79
2133 2841 2.671070 GCTAAGAGCAGCCCACCA 59.329 61.111 0.00 0.00 41.89 4.17
2136 2844 2.579201 GACGCTAAGAGCAGCCCA 59.421 61.111 0.00 0.00 42.58 5.36
2139 2847 1.086634 CCTTGGACGCTAAGAGCAGC 61.087 60.000 0.00 0.00 42.58 5.25
2175 2883 1.203038 TCATGATTTGGGCCGCCATAT 60.203 47.619 12.58 0.49 0.00 1.78
2495 3235 3.304391 GCAGGTGCGACTCAAATTAAACA 60.304 43.478 0.00 0.00 0.00 2.83
2528 3268 7.931046 TCTAATTAAGCAGGTACCCCTAAAAA 58.069 34.615 8.74 2.25 39.89 1.94
2529 3269 7.513560 TCTAATTAAGCAGGTACCCCTAAAA 57.486 36.000 8.74 4.58 39.89 1.52
2530 3270 7.701257 ATCTAATTAAGCAGGTACCCCTAAA 57.299 36.000 8.74 0.00 39.89 1.85
2531 3271 7.701257 AATCTAATTAAGCAGGTACCCCTAA 57.299 36.000 8.74 1.76 39.89 2.69
2532 3272 8.654094 GTTAATCTAATTAAGCAGGTACCCCTA 58.346 37.037 8.74 0.00 35.67 3.53
2533 3273 7.350124 AGTTAATCTAATTAAGCAGGTACCCCT 59.650 37.037 8.74 2.11 37.16 4.79
2534 3274 7.444487 CAGTTAATCTAATTAAGCAGGTACCCC 59.556 40.741 8.74 0.00 35.56 4.95
2535 3275 8.208903 TCAGTTAATCTAATTAAGCAGGTACCC 58.791 37.037 8.74 0.00 35.56 3.69
2536 3276 9.262358 CTCAGTTAATCTAATTAAGCAGGTACC 57.738 37.037 2.73 2.73 35.56 3.34
2537 3277 9.262358 CCTCAGTTAATCTAATTAAGCAGGTAC 57.738 37.037 0.00 0.00 35.56 3.34
2538 3278 8.989131 ACCTCAGTTAATCTAATTAAGCAGGTA 58.011 33.333 11.59 0.00 37.40 3.08
2539 3279 7.862675 ACCTCAGTTAATCTAATTAAGCAGGT 58.137 34.615 9.23 9.23 35.94 4.00
2555 3295 6.606395 GGTCTACCTTCATCTTACCTCAGTTA 59.394 42.308 0.00 0.00 0.00 2.24
2593 3333 5.800653 AGAACCCATAAGTTATAGGGGAGT 58.199 41.667 20.23 10.48 45.83 3.85
2608 3348 3.264193 TCAATGTGCTGACTAGAACCCAT 59.736 43.478 0.00 0.00 30.73 4.00
2614 3354 9.453572 AATTTAATTCTCAATGTGCTGACTAGA 57.546 29.630 0.00 0.00 0.00 2.43
2657 3421 7.686438 TTAGAAGCAAAAATAGCATCACTCA 57.314 32.000 0.00 0.00 32.53 3.41
2689 3453 5.131784 AGGTCCTAGTATTCAGTAACGGAG 58.868 45.833 0.00 0.00 0.00 4.63
2730 3494 8.846607 CGCTACCAACTTTGATTTTGTTATAAC 58.153 33.333 8.75 8.75 0.00 1.89
2752 3516 2.378445 TGAATGCAGCAAGTACGCTA 57.622 45.000 0.00 0.00 41.38 4.26
2756 3520 4.093556 GGTAGTCTTGAATGCAGCAAGTAC 59.906 45.833 23.47 19.64 42.49 2.73
2758 3522 3.077359 GGTAGTCTTGAATGCAGCAAGT 58.923 45.455 23.47 13.14 42.49 3.16
2759 3523 2.421424 GGGTAGTCTTGAATGCAGCAAG 59.579 50.000 20.34 20.34 43.09 4.01
2760 3524 2.436417 GGGTAGTCTTGAATGCAGCAA 58.564 47.619 0.00 0.00 0.00 3.91
2761 3525 1.675714 CGGGTAGTCTTGAATGCAGCA 60.676 52.381 0.00 0.00 0.00 4.41
2763 3527 2.544685 CTCGGGTAGTCTTGAATGCAG 58.455 52.381 0.00 0.00 0.00 4.41
2764 3528 1.207089 CCTCGGGTAGTCTTGAATGCA 59.793 52.381 0.00 0.00 0.00 3.96
2765 3529 1.480954 TCCTCGGGTAGTCTTGAATGC 59.519 52.381 0.00 0.00 0.00 3.56
2766 3530 3.887621 TTCCTCGGGTAGTCTTGAATG 57.112 47.619 0.00 0.00 0.00 2.67
2767 3531 3.432326 GCATTCCTCGGGTAGTCTTGAAT 60.432 47.826 0.00 0.00 0.00 2.57
2768 3532 2.093658 GCATTCCTCGGGTAGTCTTGAA 60.094 50.000 0.00 0.00 0.00 2.69
2769 3533 1.480954 GCATTCCTCGGGTAGTCTTGA 59.519 52.381 0.00 0.00 0.00 3.02
2770 3534 1.207089 TGCATTCCTCGGGTAGTCTTG 59.793 52.381 0.00 0.00 0.00 3.02
2771 3535 1.568504 TGCATTCCTCGGGTAGTCTT 58.431 50.000 0.00 0.00 0.00 3.01
2772 3536 1.482593 CTTGCATTCCTCGGGTAGTCT 59.517 52.381 0.00 0.00 0.00 3.24
2773 3537 1.480954 TCTTGCATTCCTCGGGTAGTC 59.519 52.381 0.00 0.00 0.00 2.59
2774 3538 1.568504 TCTTGCATTCCTCGGGTAGT 58.431 50.000 0.00 0.00 0.00 2.73
2775 3539 2.548920 GGATCTTGCATTCCTCGGGTAG 60.549 54.545 0.00 0.00 0.00 3.18
2776 3540 1.416401 GGATCTTGCATTCCTCGGGTA 59.584 52.381 0.00 0.00 0.00 3.69
2777 3541 0.181350 GGATCTTGCATTCCTCGGGT 59.819 55.000 0.00 0.00 0.00 5.28
2778 3542 0.471617 AGGATCTTGCATTCCTCGGG 59.528 55.000 7.39 0.00 37.89 5.14
2779 3543 1.134280 ACAGGATCTTGCATTCCTCGG 60.134 52.381 4.46 4.28 40.44 4.63
2780 3544 2.208431 GACAGGATCTTGCATTCCTCG 58.792 52.381 4.46 8.63 40.44 4.63
2781 3545 3.272574 TGACAGGATCTTGCATTCCTC 57.727 47.619 4.46 0.00 40.44 3.71
2782 3546 3.726557 TTGACAGGATCTTGCATTCCT 57.273 42.857 4.46 7.39 43.24 3.36
2783 3547 6.002704 AGATATTGACAGGATCTTGCATTCC 58.997 40.000 4.46 0.00 0.00 3.01
2784 3548 6.149142 GGAGATATTGACAGGATCTTGCATTC 59.851 42.308 4.46 0.00 30.01 2.67
2815 3579 2.252714 AGACCAGGTGAAAGAGTCCTC 58.747 52.381 0.00 0.00 0.00 3.71
2841 3605 2.025863 GCAATGATACCTGCTTGCCCT 61.026 52.381 0.00 0.00 38.39 5.19
2843 3607 1.105457 TGCAATGATACCTGCTTGCC 58.895 50.000 3.92 0.00 42.50 4.52
2858 3622 1.699083 TCAGTCCCTTGATCTGTGCAA 59.301 47.619 0.00 0.00 0.00 4.08
2917 3681 8.518430 TCCATAGAAGCTAATAATTTTGCACA 57.482 30.769 0.00 0.00 36.25 4.57
2968 3732 2.364632 TCGGTTGGGTGATGCTAATTG 58.635 47.619 0.00 0.00 0.00 2.32
3022 3786 3.468071 TCCTAGGAGTGCAAGGTCTTA 57.532 47.619 7.62 0.00 0.00 2.10
3034 3798 5.123227 TGTTTTCAAGTGTGTTCCTAGGAG 58.877 41.667 12.26 0.00 0.00 3.69
3072 3854 1.091771 CCGAGCTATTGTGTGCCCAG 61.092 60.000 0.00 0.00 0.00 4.45
3090 3872 7.573968 AATTATTCAGTTCAACCTATCTGCC 57.426 36.000 0.00 0.00 0.00 4.85
3091 3873 9.547753 TCTAATTATTCAGTTCAACCTATCTGC 57.452 33.333 0.00 0.00 0.00 4.26
3093 3875 9.751542 CGTCTAATTATTCAGTTCAACCTATCT 57.248 33.333 0.00 0.00 0.00 1.98
3094 3876 8.488764 GCGTCTAATTATTCAGTTCAACCTATC 58.511 37.037 0.00 0.00 0.00 2.08
3095 3877 7.985184 TGCGTCTAATTATTCAGTTCAACCTAT 59.015 33.333 0.00 0.00 0.00 2.57
3096 3878 7.324935 TGCGTCTAATTATTCAGTTCAACCTA 58.675 34.615 0.00 0.00 0.00 3.08
3097 3879 6.170506 TGCGTCTAATTATTCAGTTCAACCT 58.829 36.000 0.00 0.00 0.00 3.50
3098 3880 6.417191 TGCGTCTAATTATTCAGTTCAACC 57.583 37.500 0.00 0.00 0.00 3.77
3099 3881 7.429340 CCATTGCGTCTAATTATTCAGTTCAAC 59.571 37.037 0.00 0.00 0.00 3.18
3100 3882 7.415095 CCCATTGCGTCTAATTATTCAGTTCAA 60.415 37.037 0.00 0.00 0.00 2.69
3102 3884 6.038271 ACCCATTGCGTCTAATTATTCAGTTC 59.962 38.462 0.00 0.00 0.00 3.01
3103 3885 5.885912 ACCCATTGCGTCTAATTATTCAGTT 59.114 36.000 0.00 0.00 0.00 3.16
3104 3886 5.437060 ACCCATTGCGTCTAATTATTCAGT 58.563 37.500 0.00 0.00 0.00 3.41
3105 3887 6.347725 GCTACCCATTGCGTCTAATTATTCAG 60.348 42.308 0.00 0.00 0.00 3.02
3109 3891 4.968259 TGCTACCCATTGCGTCTAATTAT 58.032 39.130 0.00 0.00 0.00 1.28
3111 3893 3.275617 TGCTACCCATTGCGTCTAATT 57.724 42.857 0.00 0.00 0.00 1.40
3112 3894 2.943033 GTTGCTACCCATTGCGTCTAAT 59.057 45.455 0.00 0.00 0.00 1.73
3119 3906 9.626045 GATAATATAAAAGTTGCTACCCATTGC 57.374 33.333 0.00 0.00 0.00 3.56
3123 3910 7.447238 GGCTGATAATATAAAAGTTGCTACCCA 59.553 37.037 0.00 0.00 0.00 4.51
3132 3919 4.760204 GCCCACGGCTGATAATATAAAAGT 59.240 41.667 0.00 0.00 46.69 2.66
3151 3938 2.981784 AGAGGTATGCTATTGATGCCCA 59.018 45.455 0.00 0.00 0.00 5.36
3152 3939 3.710209 AGAGGTATGCTATTGATGCCC 57.290 47.619 0.00 0.00 0.00 5.36
3153 3940 5.046304 TCCTTAGAGGTATGCTATTGATGCC 60.046 44.000 0.00 0.00 36.53 4.40
3154 3941 6.042638 TCCTTAGAGGTATGCTATTGATGC 57.957 41.667 0.00 0.00 36.53 3.91
3155 3942 7.601886 CAGTTCCTTAGAGGTATGCTATTGATG 59.398 40.741 0.00 0.00 36.53 3.07
3156 3943 7.510685 TCAGTTCCTTAGAGGTATGCTATTGAT 59.489 37.037 0.00 0.00 36.53 2.57
3157 3944 6.839134 TCAGTTCCTTAGAGGTATGCTATTGA 59.161 38.462 0.00 0.00 36.53 2.57
3158 3945 7.055667 TCAGTTCCTTAGAGGTATGCTATTG 57.944 40.000 0.00 0.00 36.53 1.90
3159 3946 7.863901 ATCAGTTCCTTAGAGGTATGCTATT 57.136 36.000 0.00 0.00 36.53 1.73
3160 3947 9.196139 GATATCAGTTCCTTAGAGGTATGCTAT 57.804 37.037 0.00 0.00 36.53 2.97
3161 3948 7.616150 GGATATCAGTTCCTTAGAGGTATGCTA 59.384 40.741 4.83 0.00 36.53 3.49
3162 3949 6.439058 GGATATCAGTTCCTTAGAGGTATGCT 59.561 42.308 4.83 0.00 36.53 3.79
3163 3950 6.211584 TGGATATCAGTTCCTTAGAGGTATGC 59.788 42.308 4.83 0.00 36.53 3.14
3164 3951 7.782897 TGGATATCAGTTCCTTAGAGGTATG 57.217 40.000 4.83 0.00 36.53 2.39
3165 3952 8.235230 TCTTGGATATCAGTTCCTTAGAGGTAT 58.765 37.037 4.83 0.00 36.53 2.73
3166 3953 7.592736 TCTTGGATATCAGTTCCTTAGAGGTA 58.407 38.462 4.83 0.00 36.53 3.08
3167 3954 6.444704 TCTTGGATATCAGTTCCTTAGAGGT 58.555 40.000 4.83 0.00 36.53 3.85
3168 3955 6.985653 TCTTGGATATCAGTTCCTTAGAGG 57.014 41.667 4.83 0.00 36.46 3.69
3169 3956 7.070571 ACCTTCTTGGATATCAGTTCCTTAGAG 59.929 40.741 4.83 0.00 39.71 2.43
3170 3957 6.903534 ACCTTCTTGGATATCAGTTCCTTAGA 59.096 38.462 4.83 0.00 39.71 2.10
3171 3958 6.989169 CACCTTCTTGGATATCAGTTCCTTAG 59.011 42.308 4.83 0.00 39.71 2.18
3172 3959 6.126768 CCACCTTCTTGGATATCAGTTCCTTA 60.127 42.308 4.83 0.00 39.24 2.69
3179 3966 4.653341 AGACTCCACCTTCTTGGATATCAG 59.347 45.833 4.83 0.00 44.97 2.90
3213 4000 6.987992 GGGATGTCAATGTTTCAATGCATATT 59.012 34.615 0.00 0.00 0.00 1.28
3214 4001 6.463331 GGGGATGTCAATGTTTCAATGCATAT 60.463 38.462 0.00 0.00 0.00 1.78
3215 4002 5.163426 GGGGATGTCAATGTTTCAATGCATA 60.163 40.000 0.00 0.00 0.00 3.14
3217 4004 3.055963 GGGGATGTCAATGTTTCAATGCA 60.056 43.478 0.00 0.00 0.00 3.96
3218 4005 3.055963 TGGGGATGTCAATGTTTCAATGC 60.056 43.478 0.00 0.00 0.00 3.56
3237 4024 1.888512 CAGTGGGTTTCTGACATTGGG 59.111 52.381 0.00 0.00 35.20 4.12
3247 4041 1.748493 TGCAGTTGTTCAGTGGGTTTC 59.252 47.619 0.00 0.00 0.00 2.78
3288 4082 0.036388 TGTCTCCTGAATTGACGCCC 60.036 55.000 0.00 0.00 33.81 6.13
3307 4101 6.768029 TTTTAACACTAACACGCGTCTTAT 57.232 33.333 9.86 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.