Multiple sequence alignment - TraesCS1B01G401000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G401000 chr1B 100.000 5500 0 0 1 5500 631233270 631227771 0.000000e+00 10157.0
1 TraesCS1B01G401000 chr1B 96.262 107 4 0 4858 4964 513973777 513973883 5.660000e-40 176.0
2 TraesCS1B01G401000 chr1B 95.327 107 5 0 4858 4964 542807864 542807970 2.630000e-38 171.0
3 TraesCS1B01G401000 chr1B 93.333 105 6 1 510 614 538168114 538168011 2.650000e-33 154.0
4 TraesCS1B01G401000 chr1B 100.000 73 0 0 2681 2753 631230554 631230482 9.610000e-28 135.0
5 TraesCS1B01G401000 chr1B 100.000 73 0 0 2717 2789 631230590 631230518 9.610000e-28 135.0
6 TraesCS1B01G401000 chr1B 100.000 37 0 0 2681 2717 631230518 631230482 9.890000e-08 69.4
7 TraesCS1B01G401000 chr1B 100.000 37 0 0 2753 2789 631230590 631230554 9.890000e-08 69.4
8 TraesCS1B01G401000 chr1A 94.402 1947 77 19 2753 4693 551485954 551484034 0.000000e+00 2963.0
9 TraesCS1B01G401000 chr1A 92.372 957 29 13 787 1721 551487769 551486835 0.000000e+00 1323.0
10 TraesCS1B01G401000 chr1A 91.462 773 32 19 1812 2584 551486834 551486096 0.000000e+00 1031.0
11 TraesCS1B01G401000 chr1A 83.559 517 48 17 1 509 551489494 551489007 3.020000e-122 449.0
12 TraesCS1B01G401000 chr1A 88.991 218 20 4 156 371 588380195 588380410 3.270000e-67 267.0
13 TraesCS1B01G401000 chr1A 84.314 255 35 4 4 255 491373072 491372820 1.530000e-60 244.0
14 TraesCS1B01G401000 chr1A 81.505 319 25 16 4737 5035 551483917 551483613 1.190000e-56 231.0
15 TraesCS1B01G401000 chr1A 95.489 133 6 0 2585 2717 551486050 551485918 4.320000e-51 213.0
16 TraesCS1B01G401000 chr1A 85.841 113 10 3 5238 5348 551483234 551483126 1.250000e-21 115.0
17 TraesCS1B01G401000 chr1A 97.297 37 1 0 2717 2753 551485954 551485918 4.600000e-06 63.9
18 TraesCS1B01G401000 chr1D 95.553 1844 61 13 2845 4688 459051231 459049409 0.000000e+00 2931.0
19 TraesCS1B01G401000 chr1D 93.361 964 29 12 775 1720 459053603 459052657 0.000000e+00 1393.0
20 TraesCS1B01G401000 chr1D 96.747 707 19 3 1882 2584 459052407 459051701 0.000000e+00 1175.0
21 TraesCS1B01G401000 chr1D 90.455 440 33 8 77 509 459055812 459055375 6.180000e-159 571.0
22 TraesCS1B01G401000 chr1D 82.870 432 32 15 4866 5269 459048998 459048581 3.150000e-92 350.0
23 TraesCS1B01G401000 chr1D 94.030 134 3 3 2585 2717 459051655 459051526 1.210000e-46 198.0
24 TraesCS1B01G401000 chr1D 90.728 151 11 3 599 748 459055369 459055221 1.210000e-46 198.0
25 TraesCS1B01G401000 chr1D 85.106 188 18 7 4768 4952 215043212 215043392 3.380000e-42 183.0
26 TraesCS1B01G401000 chr1D 95.327 107 5 0 4858 4964 66760315 66760421 2.630000e-38 171.0
27 TraesCS1B01G401000 chr1D 93.458 107 7 0 1720 1826 332956527 332956421 5.700000e-35 159.0
28 TraesCS1B01G401000 chr1D 94.949 99 5 0 1717 1815 354519019 354518921 7.380000e-34 156.0
29 TraesCS1B01G401000 chr1D 93.396 106 5 2 1711 1815 420554646 420554542 7.380000e-34 156.0
30 TraesCS1B01G401000 chr1D 83.582 134 9 4 4691 4824 459049330 459049210 4.500000e-21 113.0
31 TraesCS1B01G401000 chr1D 94.828 58 3 0 1812 1869 459052657 459052600 2.110000e-14 91.6
32 TraesCS1B01G401000 chr1D 91.525 59 4 1 248 306 261882924 261882867 4.570000e-11 80.5
33 TraesCS1B01G401000 chr2A 90.727 1445 107 16 2749 4189 74118096 74116675 0.000000e+00 1901.0
34 TraesCS1B01G401000 chr2A 90.512 664 32 17 3742 4397 74109273 74108633 0.000000e+00 848.0
35 TraesCS1B01G401000 chr2A 82.346 878 89 31 888 1720 74120052 74119196 0.000000e+00 702.0
36 TraesCS1B01G401000 chr2A 89.668 542 37 9 1007 1536 74138982 74138448 0.000000e+00 673.0
37 TraesCS1B01G401000 chr2A 87.986 566 54 10 2975 3531 74137548 74136988 0.000000e+00 656.0
38 TraesCS1B01G401000 chr2A 89.544 373 37 2 3654 4026 74136909 74136539 6.450000e-129 472.0
39 TraesCS1B01G401000 chr2A 91.618 346 20 6 940 1285 74139863 74139527 2.320000e-128 470.0
40 TraesCS1B01G401000 chr2A 86.461 421 39 13 2117 2534 74118899 74118494 3.910000e-121 446.0
41 TraesCS1B01G401000 chr2A 82.536 481 46 10 4927 5377 74108427 74107955 6.680000e-104 388.0
42 TraesCS1B01G401000 chr2A 83.594 256 39 3 2 255 49425247 49424993 2.560000e-58 237.0
43 TraesCS1B01G401000 chr2A 81.890 254 33 8 1814 2057 74119164 74118914 9.340000e-48 202.0
44 TraesCS1B01G401000 chr2B 90.608 1448 103 20 2753 4189 114053750 114052325 0.000000e+00 1890.0
45 TraesCS1B01G401000 chr2B 90.066 604 39 11 945 1536 114063324 114062730 0.000000e+00 763.0
46 TraesCS1B01G401000 chr2B 82.969 869 85 29 888 1720 114056853 114056012 0.000000e+00 726.0
47 TraesCS1B01G401000 chr2B 90.000 540 50 3 2975 3510 114061868 114061329 0.000000e+00 695.0
48 TraesCS1B01G401000 chr2B 86.184 608 37 25 4100 4693 114049893 114049319 1.010000e-171 614.0
49 TraesCS1B01G401000 chr2B 96.835 316 8 2 3713 4028 114050209 114049896 1.360000e-145 527.0
50 TraesCS1B01G401000 chr2B 78.529 843 126 37 3656 4497 114061228 114060440 2.290000e-138 503.0
51 TraesCS1B01G401000 chr2B 87.252 353 34 7 2117 2468 114055748 114055406 5.160000e-105 392.0
52 TraesCS1B01G401000 chr2B 78.571 546 43 12 4930 5413 114048925 114048392 5.390000e-75 292.0
53 TraesCS1B01G401000 chr2B 89.912 228 19 4 1999 2225 114062384 114062160 1.940000e-74 291.0
54 TraesCS1B01G401000 chr2B 84.884 258 32 6 2 255 24193477 24193731 2.540000e-63 254.0
55 TraesCS1B01G401000 chr2B 84.375 256 36 3 2 255 739539267 739539014 1.180000e-61 248.0
56 TraesCS1B01G401000 chr2B 84.047 257 36 4 2 255 682343429 682343175 5.500000e-60 243.0
57 TraesCS1B01G401000 chr2B 82.283 254 32 8 1814 2057 114056013 114055763 2.010000e-49 207.0
58 TraesCS1B01G401000 chr2B 91.057 123 6 5 1701 1822 601206831 601206949 1.590000e-35 161.0
59 TraesCS1B01G401000 chr2B 95.050 101 4 1 509 608 799161140 799161040 2.050000e-34 158.0
60 TraesCS1B01G401000 chr2D 91.121 1374 100 14 2801 4169 74951015 74949659 0.000000e+00 1842.0
61 TraesCS1B01G401000 chr2D 86.988 684 56 19 869 1536 74969089 74968423 0.000000e+00 739.0
62 TraesCS1B01G401000 chr2D 89.501 581 52 6 2974 3550 74967561 74966986 0.000000e+00 726.0
63 TraesCS1B01G401000 chr2D 82.286 875 78 35 888 1720 74953074 74952235 0.000000e+00 686.0
64 TraesCS1B01G401000 chr2D 82.609 529 46 15 4923 5413 74938647 74938127 5.090000e-115 425.0
65 TraesCS1B01G401000 chr2D 91.748 206 14 3 2021 2225 74968060 74967857 3.240000e-72 283.0
66 TraesCS1B01G401000 chr2D 82.153 353 31 12 2117 2468 74951968 74951647 1.950000e-69 274.0
67 TraesCS1B01G401000 chr2D 89.441 161 17 0 2975 3135 145674108 145673948 2.600000e-48 204.0
68 TraesCS1B01G401000 chr2D 84.574 188 18 8 4768 4952 365349192 365349013 5.660000e-40 176.0
69 TraesCS1B01G401000 chr2D 90.909 110 8 2 1716 1824 98693498 98693606 4.440000e-31 147.0
70 TraesCS1B01G401000 chr2D 94.118 51 3 0 4691 4741 365349246 365349196 1.640000e-10 78.7
71 TraesCS1B01G401000 chr2D 94.444 36 1 1 4323 4358 74939339 74939305 3.000000e-03 54.7
72 TraesCS1B01G401000 chr5D 83.766 308 46 4 1 306 505917798 505917493 6.970000e-74 289.0
73 TraesCS1B01G401000 chr5D 91.803 122 5 5 502 620 504793024 504792905 1.230000e-36 165.0
74 TraesCS1B01G401000 chr5D 83.898 118 17 2 632 748 505919920 505919804 1.620000e-20 111.0
75 TraesCS1B01G401000 chr4A 85.200 250 30 6 2 247 651203886 651204132 3.290000e-62 250.0
76 TraesCS1B01G401000 chr7A 84.047 257 36 4 2 255 605839655 605839401 5.500000e-60 243.0
77 TraesCS1B01G401000 chr7A 96.262 107 4 0 4858 4964 727859885 727859991 5.660000e-40 176.0
78 TraesCS1B01G401000 chr7A 96.296 54 2 0 602 655 128046921 128046868 7.590000e-14 89.8
79 TraesCS1B01G401000 chr7D 95.327 107 5 0 4858 4964 568458977 568459083 2.630000e-38 171.0
80 TraesCS1B01G401000 chr6B 95.327 107 5 0 4858 4964 208496499 208496393 2.630000e-38 171.0
81 TraesCS1B01G401000 chr5B 95.327 107 5 0 4858 4964 43858226 43858120 2.630000e-38 171.0
82 TraesCS1B01G401000 chr5B 95.050 101 3 2 1719 1818 81177117 81177018 2.050000e-34 158.0
83 TraesCS1B01G401000 chr5B 88.800 125 8 6 502 621 271112798 271112921 1.230000e-31 148.0
84 TraesCS1B01G401000 chr7B 95.146 103 5 0 1719 1821 478835037 478835139 4.410000e-36 163.0
85 TraesCS1B01G401000 chr7B 88.095 126 9 4 497 619 440325703 440325581 1.600000e-30 145.0
86 TraesCS1B01G401000 chrUn 95.050 101 4 1 509 608 23900938 23900838 2.050000e-34 158.0
87 TraesCS1B01G401000 chrUn 95.000 100 3 2 502 601 135090711 135090808 7.380000e-34 156.0
88 TraesCS1B01G401000 chrUn 95.000 100 3 2 502 601 152687567 152687664 7.380000e-34 156.0
89 TraesCS1B01G401000 chrUn 92.308 52 3 1 251 302 41587348 41587298 7.640000e-09 73.1
90 TraesCS1B01G401000 chrUn 90.909 55 4 1 245 299 346208813 346208866 7.640000e-09 73.1
91 TraesCS1B01G401000 chr6D 92.661 109 8 0 1719 1827 319691572 319691680 2.050000e-34 158.0
92 TraesCS1B01G401000 chr3B 93.396 106 5 2 497 602 341224295 341224398 7.380000e-34 156.0
93 TraesCS1B01G401000 chr3B 90.909 55 4 1 245 299 14393250 14393303 7.640000e-09 73.1
94 TraesCS1B01G401000 chr6A 91.743 109 9 0 1719 1827 457381490 457381598 9.540000e-33 152.0
95 TraesCS1B01G401000 chr4D 82.353 102 14 2 206 306 55717729 55717631 9.820000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G401000 chr1B 631227771 631233270 5499 True 2113.160000 10157 100.000000 1 5500 5 chr1B.!!$R2 5499
1 TraesCS1B01G401000 chr1A 551483126 551489494 6368 True 798.612500 2963 90.240875 1 5348 8 chr1A.!!$R2 5347
2 TraesCS1B01G401000 chr1D 459048581 459055812 7231 True 780.066667 2931 91.350444 77 5269 9 chr1D.!!$R5 5192
3 TraesCS1B01G401000 chr2A 74116675 74120052 3377 True 812.750000 1901 85.356000 888 4189 4 chr2A.!!$R3 3301
4 TraesCS1B01G401000 chr2A 74107955 74109273 1318 True 618.000000 848 86.524000 3742 5377 2 chr2A.!!$R2 1635
5 TraesCS1B01G401000 chr2A 74136539 74139863 3324 True 567.750000 673 89.704000 940 4026 4 chr2A.!!$R4 3086
6 TraesCS1B01G401000 chr2B 114048392 114063324 14932 True 627.272727 1890 86.655364 888 5413 11 chr2B.!!$R4 4525
7 TraesCS1B01G401000 chr2D 74949659 74953074 3415 True 934.000000 1842 85.186667 888 4169 3 chr2D.!!$R3 3281
8 TraesCS1B01G401000 chr2D 74966986 74969089 2103 True 582.666667 739 89.412333 869 3550 3 chr2D.!!$R4 2681
9 TraesCS1B01G401000 chr2D 74938127 74939339 1212 True 239.850000 425 88.526500 4323 5413 2 chr2D.!!$R2 1090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 2525 0.336392 GGAGGGGAAAGAATTGGGCT 59.664 55.0 0.00 0.0 0.00 5.19 F
1734 4352 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.0 0.00 0.0 0.00 4.12 F
2635 13657 0.385751 CCAGTCACGTCACTGTCTGT 59.614 55.0 18.68 0.0 42.10 3.41 F
4355 18335 0.250209 CCCAGGATCAAGAGATGGCG 60.250 60.0 0.00 0.0 33.72 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 4436 2.224867 CCCTCTGTCCCAAAATGAGTGT 60.225 50.0 0.0 0.0 0.00 3.55 R
2972 14401 0.250038 CCATACCACTCCCTGCATCG 60.250 60.0 0.0 0.0 0.00 3.84 R
4478 18458 0.391263 AGTCATCGGCCTCGGTTTTC 60.391 55.0 0.0 0.0 36.95 2.29 R
5463 20118 0.107459 AAAGGCGATTCAGAGGAGGC 60.107 55.0 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.930837 TTTCACTCATTCCAAAAACTGGT 57.069 34.783 0.00 0.00 46.51 4.00
33 34 5.930837 TCACTCATTCCAAAAACTGGTTT 57.069 34.783 0.00 0.00 46.51 3.27
51 53 9.793259 AACTGGTTTTAATCATTAAGAGACTGA 57.207 29.630 0.00 0.00 0.00 3.41
59 61 7.545362 AATCATTAAGAGACTGATTTCACCG 57.455 36.000 0.00 0.00 36.47 4.94
60 62 6.280855 TCATTAAGAGACTGATTTCACCGA 57.719 37.500 0.00 0.00 0.00 4.69
61 63 6.100004 TCATTAAGAGACTGATTTCACCGAC 58.900 40.000 0.00 0.00 0.00 4.79
64 66 4.608948 AGAGACTGATTTCACCGACTTT 57.391 40.909 0.00 0.00 0.00 2.66
75 77 4.647424 TCACCGACTTTGCAAGAAAAAT 57.353 36.364 0.00 0.00 0.00 1.82
282 286 6.257630 CACCGAAATATGTGTCATGTGTATCA 59.742 38.462 0.00 0.00 0.00 2.15
345 350 7.707035 GGATGTCTTACTTATCAAACGAGTGAT 59.293 37.037 9.83 9.83 41.21 3.06
358 363 6.093909 TCAAACGAGTGATATACGTGAACCTA 59.906 38.462 0.00 0.00 40.10 3.08
367 372 8.928733 GTGATATACGTGAACCTAGTTTCAAAA 58.071 33.333 4.05 0.00 37.24 2.44
461 470 4.200092 AGTTCCAAACAAGACTTCACTCC 58.800 43.478 0.00 0.00 0.00 3.85
495 504 5.597813 AAACTGAGACAATTAGCTTCACG 57.402 39.130 0.00 0.00 0.00 4.35
522 531 5.859205 TTAAATAACTACTCCCTCCGTCC 57.141 43.478 0.00 0.00 0.00 4.79
523 532 2.378378 ATAACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
524 533 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
525 534 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
526 535 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
527 536 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
528 537 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
529 538 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
530 539 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
531 540 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
532 541 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
533 542 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
534 543 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
535 544 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
537 546 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
538 547 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
539 548 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
540 549 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
541 550 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
586 595 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
587 596 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
588 597 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
589 598 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
590 599 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
591 600 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
592 601 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
596 605 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
597 606 1.002069 TGGGACGGAGGGAGTAGTTA 58.998 55.000 0.00 0.00 0.00 2.24
600 609 3.036819 GGGACGGAGGGAGTAGTTATTT 58.963 50.000 0.00 0.00 0.00 1.40
642 651 7.818930 AGTTTCACATGTTTCACACTGAAAAAT 59.181 29.630 0.00 0.00 46.53 1.82
667 676 7.418408 TGTTTCATATGCACGAGTTGTTTTTA 58.582 30.769 0.00 0.00 0.00 1.52
819 2522 3.306989 GCAAAAGGAGGGGAAAGAATTGG 60.307 47.826 0.00 0.00 0.00 3.16
822 2525 0.336392 GGAGGGGAAAGAATTGGGCT 59.664 55.000 0.00 0.00 0.00 5.19
853 2556 2.505982 CAATCGGACGGCCCAGAT 59.494 61.111 0.00 0.00 34.14 2.90
934 2644 1.532238 CTGGCCTAAACCCTAGCCC 59.468 63.158 3.32 0.00 45.14 5.19
935 2645 0.988678 CTGGCCTAAACCCTAGCCCT 60.989 60.000 3.32 0.00 45.14 5.19
936 2646 0.986550 TGGCCTAAACCCTAGCCCTC 60.987 60.000 3.32 0.00 45.14 4.30
937 2647 0.694783 GGCCTAAACCCTAGCCCTCT 60.695 60.000 0.00 0.00 39.60 3.69
938 2648 1.214217 GCCTAAACCCTAGCCCTCTT 58.786 55.000 0.00 0.00 0.00 2.85
943 2653 2.844839 CCCTAGCCCTCTTCCCCG 60.845 72.222 0.00 0.00 0.00 5.73
1334 3892 1.658686 ATGACCGACGAGCTGAGGAC 61.659 60.000 0.00 0.00 0.00 3.85
1565 4127 5.867330 TCCCGTCTAGTTTCCATGTTTTAA 58.133 37.500 0.00 0.00 0.00 1.52
1566 4128 6.478129 TCCCGTCTAGTTTCCATGTTTTAAT 58.522 36.000 0.00 0.00 0.00 1.40
1567 4129 6.943718 TCCCGTCTAGTTTCCATGTTTTAATT 59.056 34.615 0.00 0.00 0.00 1.40
1579 4180 8.755696 TCCATGTTTTAATTACATTGTTCTGC 57.244 30.769 0.00 0.00 34.11 4.26
1620 4234 9.601217 CAGTAAAGCTGTGTAGTAGGATAAATT 57.399 33.333 0.00 0.00 40.27 1.82
1656 4274 2.521708 ACTTGGGTTGTGGCTGGC 60.522 61.111 0.00 0.00 0.00 4.85
1722 4340 7.448748 AATGTTTTGGTGGTATGAACTACTC 57.551 36.000 0.00 0.00 37.27 2.59
1723 4341 5.310451 TGTTTTGGTGGTATGAACTACTCC 58.690 41.667 0.00 0.00 37.27 3.85
1724 4342 4.563140 TTTGGTGGTATGAACTACTCCC 57.437 45.455 0.00 0.00 37.27 4.30
1725 4343 3.484953 TGGTGGTATGAACTACTCCCT 57.515 47.619 0.00 0.00 37.27 4.20
1726 4344 3.371965 TGGTGGTATGAACTACTCCCTC 58.628 50.000 0.00 0.00 37.27 4.30
1727 4345 2.699321 GGTGGTATGAACTACTCCCTCC 59.301 54.545 0.00 0.00 37.27 4.30
1728 4346 2.361438 GTGGTATGAACTACTCCCTCCG 59.639 54.545 0.00 0.00 34.45 4.63
1729 4347 2.024655 TGGTATGAACTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
1730 4348 2.622470 GGTATGAACTACTCCCTCCGTC 59.378 54.545 0.00 0.00 0.00 4.79
1731 4349 1.777941 ATGAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
1732 4350 0.324091 TGAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
1734 4352 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
1735 4353 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1736 4354 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
1737 4355 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
1739 4357 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1740 4358 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1742 4360 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1743 4361 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1745 4363 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1746 4364 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1747 4365 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1754 4372 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1755 4373 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
1757 4375 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1766 4384 9.310716 GTGTCTCAACTTTGTACTAACTTAAGT 57.689 33.333 1.12 1.12 34.67 2.24
1793 4440 9.080097 ACAAAGTTATACTAGAGTTGAGACACT 57.920 33.333 0.00 0.00 0.00 3.55
1794 4441 9.562583 CAAAGTTATACTAGAGTTGAGACACTC 57.437 37.037 0.00 0.00 43.26 3.51
1795 4442 8.865420 AAGTTATACTAGAGTTGAGACACTCA 57.135 34.615 0.00 0.00 45.08 3.41
1797 4444 9.469097 AGTTATACTAGAGTTGAGACACTCATT 57.531 33.333 0.00 0.00 45.08 2.57
1800 4447 8.994429 ATACTAGAGTTGAGACACTCATTTTG 57.006 34.615 0.00 0.00 45.08 2.44
1801 4448 6.226787 ACTAGAGTTGAGACACTCATTTTGG 58.773 40.000 0.00 0.00 45.08 3.28
1802 4449 4.392940 AGAGTTGAGACACTCATTTTGGG 58.607 43.478 2.30 0.00 45.08 4.12
1803 4450 4.103153 AGAGTTGAGACACTCATTTTGGGA 59.897 41.667 2.30 0.00 45.08 4.37
1804 4451 4.137543 AGTTGAGACACTCATTTTGGGAC 58.862 43.478 2.30 0.00 40.39 4.46
1805 4452 3.855255 TGAGACACTCATTTTGGGACA 57.145 42.857 0.00 0.00 35.39 4.02
1806 4453 3.743521 TGAGACACTCATTTTGGGACAG 58.256 45.455 0.00 0.00 35.84 3.51
1807 4454 3.390967 TGAGACACTCATTTTGGGACAGA 59.609 43.478 0.00 0.00 35.84 3.41
1808 4455 3.999663 GAGACACTCATTTTGGGACAGAG 59.000 47.826 0.00 0.00 42.39 3.35
1810 4457 2.224867 ACACTCATTTTGGGACAGAGGG 60.225 50.000 0.00 0.00 42.39 4.30
1859 4506 3.009143 AGAGAGTTGGACAATTACCACCC 59.991 47.826 3.45 0.00 37.13 4.61
1920 4747 3.881688 AGATCATACAGTGAATTGCCTGC 59.118 43.478 0.00 0.00 40.97 4.85
1951 4781 6.847956 CAAATTGGTTGTTGACATGTTGAT 57.152 33.333 0.00 0.00 32.08 2.57
1953 4783 3.894782 TGGTTGTTGACATGTTGATCG 57.105 42.857 0.00 0.00 0.00 3.69
1958 4788 4.990543 TGTTGACATGTTGATCGTTCTC 57.009 40.909 0.00 0.00 0.00 2.87
2281 11802 0.734253 GCTGTCGCGATGAGACTTGT 60.734 55.000 14.06 0.00 39.24 3.16
2429 11960 5.183713 CACCATTTTCTGATTGCAGGAGTTA 59.816 40.000 0.00 0.00 42.53 2.24
2433 11964 7.330208 CCATTTTCTGATTGCAGGAGTTAAAAG 59.670 37.037 0.00 0.00 42.53 2.27
2492 12024 7.122948 TGCCTCTTCTTTTGTAACCAGTTTTTA 59.877 33.333 0.00 0.00 0.00 1.52
2635 13657 0.385751 CCAGTCACGTCACTGTCTGT 59.614 55.000 18.68 0.00 42.10 3.41
2745 13929 9.513906 TCACATGGTAGTGAAAGATCATTTTAA 57.486 29.630 0.00 0.00 44.92 1.52
2746 13930 9.559958 CACATGGTAGTGAAAGATCATTTTAAC 57.440 33.333 0.00 0.00 42.05 2.01
2747 13931 9.520515 ACATGGTAGTGAAAGATCATTTTAACT 57.479 29.630 0.00 0.00 38.01 2.24
2797 13981 9.624697 GATCATTTTAACTTATCAACTGTGCAA 57.375 29.630 0.00 0.00 0.00 4.08
2847 14274 4.497291 TCTTTGCGGGGAACACTATATT 57.503 40.909 0.00 0.00 0.00 1.28
2871 14298 3.426787 TCGGTGGGTGTAATGACATTT 57.573 42.857 5.89 0.00 38.04 2.32
2905 14333 3.688694 TTACCCTTGTTGACGCTGTAT 57.311 42.857 0.00 0.00 0.00 2.29
2917 14345 6.649141 TGTTGACGCTGTATCTAGTTTTGAAT 59.351 34.615 0.00 0.00 0.00 2.57
2972 14401 6.809689 GGGTGTATTAATTGTTGCTTAACCAC 59.190 38.462 0.00 0.00 0.00 4.16
3189 14618 4.321675 GGGTAACAACCATGTCCACAATTC 60.322 45.833 0.00 0.00 39.40 2.17
3230 14663 2.096614 CCACGGTTGCTTAGTTTACGTG 60.097 50.000 0.00 0.00 46.66 4.49
3341 14777 7.119699 TCTGAGTACCGTAAAAATCTCTACGAA 59.880 37.037 3.36 0.00 42.73 3.85
3455 14891 6.018507 GCAGTCTTTCAAATCTTGCAAAATGT 60.019 34.615 0.00 0.00 0.00 2.71
3518 14954 4.894784 TCTTCAGGTAATTGTGACTGACC 58.105 43.478 0.00 0.00 39.47 4.02
3550 14988 2.830923 TGCAATTCCCACACCCTATTTG 59.169 45.455 0.00 0.00 0.00 2.32
3630 15078 6.367422 GTCAAGTATTCAGACTTTGTCCTCTG 59.633 42.308 0.00 0.00 37.57 3.35
3644 15092 2.161211 GTCCTCTGTGCTTCTGAAATGC 59.839 50.000 0.00 0.00 0.00 3.56
3685 15140 5.591643 TTTACTGCAGAGCTCTTAAAACG 57.408 39.130 23.35 2.40 0.00 3.60
3869 15324 3.074538 AGGTTAAAACATCCTGACTGCCT 59.925 43.478 0.00 0.00 0.00 4.75
3921 15382 6.018589 TGAATTCCAGATATGAGTAGCTCG 57.981 41.667 2.27 0.00 32.35 5.03
3951 15412 2.351418 TGAGAAACTGCGTGAACAAGTG 59.649 45.455 0.00 0.00 0.00 3.16
4042 15503 1.191535 TGAGGAGGGTATGACCAACG 58.808 55.000 0.00 0.00 41.02 4.10
4169 15631 4.222114 CCTGAACAATTCTTTTCGCAGAC 58.778 43.478 0.00 0.00 34.32 3.51
4355 18335 0.250209 CCCAGGATCAAGAGATGGCG 60.250 60.000 0.00 0.00 33.72 5.69
4356 18336 0.250209 CCAGGATCAAGAGATGGCGG 60.250 60.000 0.00 0.00 33.72 6.13
4357 18337 0.883814 CAGGATCAAGAGATGGCGGC 60.884 60.000 0.00 0.00 33.72 6.53
4418 18398 7.027760 AGAAAAAGAAAAAGAAGAACCGTGAC 58.972 34.615 0.00 0.00 0.00 3.67
4433 18413 1.006314 GTGACGCTGCAGAGTCTGTC 61.006 60.000 38.58 27.67 43.76 3.51
4466 18446 2.431454 GCCACAGAAGGGAAGAAGAAG 58.569 52.381 0.00 0.00 0.00 2.85
4478 18458 5.760743 AGGGAAGAAGAAGAAAAAGAAGTCG 59.239 40.000 0.00 0.00 0.00 4.18
4496 18476 1.693083 CGAAAACCGAGGCCGATGAC 61.693 60.000 0.00 0.00 41.76 3.06
4507 18494 3.482436 AGGCCGATGACTAGACTAGAAG 58.518 50.000 16.55 2.74 0.00 2.85
4535 18522 9.814899 TCTTTGTTCTGCTTGATGAAATTAAAA 57.185 25.926 0.00 0.00 0.00 1.52
4536 18523 9.853921 CTTTGTTCTGCTTGATGAAATTAAAAC 57.146 29.630 0.00 0.00 0.00 2.43
4537 18524 8.939201 TTGTTCTGCTTGATGAAATTAAAACA 57.061 26.923 0.00 0.00 0.00 2.83
4538 18525 9.545105 TTGTTCTGCTTGATGAAATTAAAACAT 57.455 25.926 0.00 0.00 0.00 2.71
4539 18526 9.195411 TGTTCTGCTTGATGAAATTAAAACATC 57.805 29.630 0.00 0.00 40.22 3.06
4540 18527 9.415544 GTTCTGCTTGATGAAATTAAAACATCT 57.584 29.630 15.56 0.00 40.39 2.90
4584 18574 2.810274 CAAGCATGGATCTAATCGGGTG 59.190 50.000 0.00 0.00 0.00 4.61
4597 18587 2.863401 TCGGGTGTCGACTATTGATG 57.137 50.000 17.92 0.51 43.74 3.07
4598 18588 2.371306 TCGGGTGTCGACTATTGATGA 58.629 47.619 17.92 2.95 43.74 2.92
4628 18621 2.105306 TCATCCTATGGTGGTGCTGATG 59.895 50.000 0.00 0.00 0.00 3.07
4647 18644 7.280876 TGCTGATGACATTTTGAGGTCTATAAC 59.719 37.037 0.00 0.00 35.11 1.89
4669 18666 1.918262 TGGAAGAGCATGGATTGAGGT 59.082 47.619 0.00 0.00 0.00 3.85
4686 18684 3.820467 TGAGGTGGCTGTTCAACTATTTG 59.180 43.478 0.00 0.00 34.38 2.32
4687 18685 2.558359 AGGTGGCTGTTCAACTATTTGC 59.442 45.455 0.00 0.00 32.09 3.68
4688 18686 2.558359 GGTGGCTGTTCAACTATTTGCT 59.442 45.455 0.00 0.00 32.17 3.91
4689 18687 3.568538 GTGGCTGTTCAACTATTTGCTG 58.431 45.455 0.00 0.00 32.17 4.41
4721 18815 4.261578 AGCACTTGGGATGTTTTGATTG 57.738 40.909 0.00 0.00 0.00 2.67
4722 18816 3.007182 AGCACTTGGGATGTTTTGATTGG 59.993 43.478 0.00 0.00 0.00 3.16
4723 18817 3.006752 GCACTTGGGATGTTTTGATTGGA 59.993 43.478 0.00 0.00 0.00 3.53
4724 18818 4.322953 GCACTTGGGATGTTTTGATTGGAT 60.323 41.667 0.00 0.00 0.00 3.41
4725 18819 5.172934 CACTTGGGATGTTTTGATTGGATG 58.827 41.667 0.00 0.00 0.00 3.51
4726 18820 4.840115 ACTTGGGATGTTTTGATTGGATGT 59.160 37.500 0.00 0.00 0.00 3.06
4727 18821 4.804868 TGGGATGTTTTGATTGGATGTG 57.195 40.909 0.00 0.00 0.00 3.21
4728 18822 3.055963 TGGGATGTTTTGATTGGATGTGC 60.056 43.478 0.00 0.00 0.00 4.57
4729 18823 3.181397 GGATGTTTTGATTGGATGTGCG 58.819 45.455 0.00 0.00 0.00 5.34
4730 18824 3.367292 GGATGTTTTGATTGGATGTGCGT 60.367 43.478 0.00 0.00 0.00 5.24
4731 18825 3.724508 TGTTTTGATTGGATGTGCGTT 57.275 38.095 0.00 0.00 0.00 4.84
4732 18826 3.379240 TGTTTTGATTGGATGTGCGTTG 58.621 40.909 0.00 0.00 0.00 4.10
4741 18835 0.238289 GATGTGCGTTGTTGAGGGTG 59.762 55.000 0.00 0.00 0.00 4.61
4757 18851 5.141182 TGAGGGTGTTTTATTGCTTGGTTA 58.859 37.500 0.00 0.00 0.00 2.85
4793 18887 6.723298 TTTCCAAGTTATTTTCCTCTGCAA 57.277 33.333 0.00 0.00 0.00 4.08
4794 18888 6.723298 TTCCAAGTTATTTTCCTCTGCAAA 57.277 33.333 0.00 0.00 0.00 3.68
4821 18915 7.093814 TGCACACATTTTGAGGCTTCTATAATT 60.094 33.333 0.00 0.00 32.48 1.40
4846 19104 8.654230 TTAGAAGAAGATGAATCGAATTGAGG 57.346 34.615 0.00 0.00 0.00 3.86
4847 19105 6.882656 AGAAGAAGATGAATCGAATTGAGGA 58.117 36.000 0.00 0.00 0.00 3.71
4848 19106 6.985645 AGAAGAAGATGAATCGAATTGAGGAG 59.014 38.462 0.00 0.00 0.00 3.69
4849 19107 5.055812 AGAAGATGAATCGAATTGAGGAGC 58.944 41.667 0.00 0.00 0.00 4.70
4850 19108 4.412796 AGATGAATCGAATTGAGGAGCA 57.587 40.909 0.00 0.00 0.00 4.26
4851 19109 4.970711 AGATGAATCGAATTGAGGAGCAT 58.029 39.130 0.00 0.00 0.00 3.79
4853 19111 3.877559 TGAATCGAATTGAGGAGCATGT 58.122 40.909 0.00 0.00 0.00 3.21
4855 19113 4.095334 TGAATCGAATTGAGGAGCATGTTG 59.905 41.667 0.00 0.00 0.00 3.33
4856 19114 3.333029 TCGAATTGAGGAGCATGTTGA 57.667 42.857 0.00 0.00 0.00 3.18
5010 19394 6.862608 TGTGCATGTGATTTCTGAAAACATAC 59.137 34.615 16.09 12.76 29.82 2.39
5052 19642 2.811431 TGGCACTGGAGTTACAAAATCG 59.189 45.455 0.00 0.00 0.00 3.34
5054 19644 2.414161 GCACTGGAGTTACAAAATCGCC 60.414 50.000 0.00 0.00 0.00 5.54
5069 19668 0.601046 TCGCCTCAGTTGCAGACTTG 60.601 55.000 0.00 0.00 36.10 3.16
5082 19682 2.352127 GCAGACTTGGTGATTTTGCTCC 60.352 50.000 0.00 0.00 0.00 4.70
5105 19714 2.802816 CCTGTTTTTCGTCTGGACTGAG 59.197 50.000 0.00 0.00 0.00 3.35
5130 19739 0.322816 ATGCTGGGTTGCTGGTGTAG 60.323 55.000 0.00 0.00 0.00 2.74
5145 19778 3.563808 TGGTGTAGTGAAATGCTGTGTTC 59.436 43.478 0.00 0.00 0.00 3.18
5173 19806 3.424703 TCTGCCTTTTCTCCATTCCTTG 58.575 45.455 0.00 0.00 0.00 3.61
5187 19824 1.948104 TCCTTGTTGACACCGTCTTG 58.052 50.000 0.00 0.00 33.15 3.02
5207 19844 1.483004 GGCTCTTCCTACTCTTGGTCC 59.517 57.143 0.00 0.00 0.00 4.46
5208 19845 2.180276 GCTCTTCCTACTCTTGGTCCA 58.820 52.381 0.00 0.00 0.00 4.02
5219 19856 1.635487 TCTTGGTCCATCCCTTCCTTG 59.365 52.381 0.00 0.00 34.77 3.61
5249 19886 0.517755 CACTCTGCTTGCTCTTGCTG 59.482 55.000 0.00 0.00 40.48 4.41
5251 19888 2.176055 CTGCTTGCTCTTGCTGCG 59.824 61.111 0.00 0.00 40.26 5.18
5254 19891 2.479650 CTTGCTCTTGCTGCGCTC 59.520 61.111 9.73 0.28 40.48 5.03
5259 19896 2.431430 TCTTGCTGCGCTCACTCG 60.431 61.111 9.73 0.00 0.00 4.18
5269 19906 1.446966 GCTCACTCGCTTCCTCCAC 60.447 63.158 0.00 0.00 0.00 4.02
5282 19919 3.302347 CTCCACGACCTGCTCCACC 62.302 68.421 0.00 0.00 0.00 4.61
5285 19922 3.374402 ACGACCTGCTCCACCTCG 61.374 66.667 0.00 0.00 0.00 4.63
5295 19932 1.754380 CTCCACCTCGTGAACCACCA 61.754 60.000 0.00 0.00 35.23 4.17
5296 19933 1.125093 TCCACCTCGTGAACCACCAT 61.125 55.000 0.00 0.00 35.23 3.55
5297 19934 0.955428 CCACCTCGTGAACCACCATG 60.955 60.000 0.00 0.00 35.23 3.66
5298 19935 0.034756 CACCTCGTGAACCACCATGA 59.965 55.000 0.00 0.00 35.23 3.07
5299 19936 0.321671 ACCTCGTGAACCACCATGAG 59.678 55.000 0.00 0.00 45.28 2.90
5356 20003 2.874010 ATCACGACGCCGCTCTCTTG 62.874 60.000 0.00 0.00 39.95 3.02
5369 20016 3.382803 CTCTTGGAGCTCCGCCAGG 62.383 68.421 27.43 11.81 39.43 4.45
5385 20040 0.107312 CAGGAACTCCATCCAGCCTG 60.107 60.000 0.00 0.00 42.27 4.85
5386 20041 1.452833 GGAACTCCATCCAGCCTGC 60.453 63.158 0.00 0.00 39.42 4.85
5413 20068 1.535896 TCTCATACGCGCTGAGTATCC 59.464 52.381 28.13 0.00 40.79 2.59
5414 20069 0.596577 TCATACGCGCTGAGTATCCC 59.403 55.000 5.73 0.00 32.96 3.85
5415 20070 0.313987 CATACGCGCTGAGTATCCCA 59.686 55.000 5.73 0.00 32.96 4.37
5416 20071 1.067565 CATACGCGCTGAGTATCCCAT 60.068 52.381 5.73 0.00 32.96 4.00
5417 20072 0.596577 TACGCGCTGAGTATCCCATC 59.403 55.000 5.73 0.00 0.00 3.51
5418 20073 1.730902 CGCGCTGAGTATCCCATCG 60.731 63.158 5.56 0.00 0.00 3.84
5419 20074 1.373497 GCGCTGAGTATCCCATCGG 60.373 63.158 0.00 0.00 0.00 4.18
5420 20075 1.806461 GCGCTGAGTATCCCATCGGA 61.806 60.000 0.00 0.00 44.33 4.55
5421 20076 0.242286 CGCTGAGTATCCCATCGGAG 59.758 60.000 0.00 0.00 43.12 4.63
5422 20077 1.621992 GCTGAGTATCCCATCGGAGA 58.378 55.000 0.00 0.00 43.12 3.71
5423 20078 1.543802 GCTGAGTATCCCATCGGAGAG 59.456 57.143 0.00 0.00 43.12 3.20
5424 20079 2.166829 CTGAGTATCCCATCGGAGAGG 58.833 57.143 0.00 0.00 43.12 3.69
5425 20080 0.892063 GAGTATCCCATCGGAGAGGC 59.108 60.000 0.00 0.00 43.12 4.70
5426 20081 0.896019 AGTATCCCATCGGAGAGGCG 60.896 60.000 0.00 0.00 43.12 5.52
5427 20082 1.606601 TATCCCATCGGAGAGGCGG 60.607 63.158 0.00 0.00 43.12 6.13
5428 20083 2.367586 TATCCCATCGGAGAGGCGGT 62.368 60.000 0.00 0.00 43.12 5.68
5429 20084 2.367586 ATCCCATCGGAGAGGCGGTA 62.368 60.000 0.00 0.00 43.12 4.02
5430 20085 2.728817 CCATCGGAGAGGCGGTAC 59.271 66.667 0.00 0.00 43.63 3.34
5445 20100 2.566010 TACGCGTTCACCGTACCC 59.434 61.111 20.78 0.00 39.88 3.69
5446 20101 2.988688 TACGCGTTCACCGTACCCC 61.989 63.158 20.78 0.00 39.88 4.95
5448 20103 4.362476 GCGTTCACCGTACCCCGT 62.362 66.667 0.00 0.00 39.32 5.28
5449 20104 2.126346 CGTTCACCGTACCCCGTC 60.126 66.667 0.00 0.00 33.66 4.79
5450 20105 2.126346 GTTCACCGTACCCCGTCG 60.126 66.667 0.00 0.00 33.66 5.12
5451 20106 2.282110 TTCACCGTACCCCGTCGA 60.282 61.111 0.00 0.00 33.66 4.20
5452 20107 1.900981 TTCACCGTACCCCGTCGAA 60.901 57.895 0.00 0.00 33.66 3.71
5453 20108 1.459455 TTCACCGTACCCCGTCGAAA 61.459 55.000 0.00 0.00 33.66 3.46
5454 20109 1.006337 CACCGTACCCCGTCGAAAA 60.006 57.895 0.00 0.00 33.66 2.29
5455 20110 1.006220 ACCGTACCCCGTCGAAAAC 60.006 57.895 0.00 0.00 33.66 2.43
5456 20111 1.290009 CCGTACCCCGTCGAAAACT 59.710 57.895 0.00 0.00 33.66 2.66
5457 20112 0.733909 CCGTACCCCGTCGAAAACTC 60.734 60.000 0.00 0.00 33.66 3.01
5458 20113 1.067199 CGTACCCCGTCGAAAACTCG 61.067 60.000 0.00 0.00 0.00 4.18
5459 20114 0.039165 GTACCCCGTCGAAAACTCGT 60.039 55.000 0.00 0.00 0.00 4.18
5460 20115 0.673437 TACCCCGTCGAAAACTCGTT 59.327 50.000 0.00 0.00 0.00 3.85
5461 20116 0.877213 ACCCCGTCGAAAACTCGTTG 60.877 55.000 0.00 0.00 0.00 4.10
5462 20117 1.203313 CCCGTCGAAAACTCGTTGC 59.797 57.895 0.00 0.00 0.00 4.17
5463 20118 1.154908 CCGTCGAAAACTCGTTGCG 60.155 57.895 0.00 0.00 0.00 4.85
5464 20119 1.783264 CGTCGAAAACTCGTTGCGC 60.783 57.895 0.00 0.00 0.00 6.09
5465 20120 1.438222 GTCGAAAACTCGTTGCGCC 60.438 57.895 4.18 0.00 0.00 6.53
5466 20121 1.593209 TCGAAAACTCGTTGCGCCT 60.593 52.632 4.18 0.00 0.00 5.52
5467 20122 1.154654 CGAAAACTCGTTGCGCCTC 60.155 57.895 4.18 0.00 0.00 4.70
5468 20123 1.206831 GAAAACTCGTTGCGCCTCC 59.793 57.895 4.18 0.00 0.00 4.30
5469 20124 1.227853 AAAACTCGTTGCGCCTCCT 60.228 52.632 4.18 0.00 0.00 3.69
5470 20125 1.228657 AAAACTCGTTGCGCCTCCTC 61.229 55.000 4.18 0.00 0.00 3.71
5471 20126 2.100879 AAACTCGTTGCGCCTCCTCT 62.101 55.000 4.18 0.00 0.00 3.69
5472 20127 2.507992 CTCGTTGCGCCTCCTCTG 60.508 66.667 4.18 0.00 0.00 3.35
5473 20128 2.989253 TCGTTGCGCCTCCTCTGA 60.989 61.111 4.18 0.00 0.00 3.27
5474 20129 2.048222 CGTTGCGCCTCCTCTGAA 60.048 61.111 4.18 0.00 0.00 3.02
5475 20130 1.448540 CGTTGCGCCTCCTCTGAAT 60.449 57.895 4.18 0.00 0.00 2.57
5476 20131 1.424493 CGTTGCGCCTCCTCTGAATC 61.424 60.000 4.18 0.00 0.00 2.52
5477 20132 1.153568 TTGCGCCTCCTCTGAATCG 60.154 57.895 4.18 0.00 0.00 3.34
5478 20133 2.964389 GCGCCTCCTCTGAATCGC 60.964 66.667 0.00 0.00 35.28 4.58
5479 20134 2.279784 CGCCTCCTCTGAATCGCC 60.280 66.667 0.00 0.00 0.00 5.54
5480 20135 2.790791 CGCCTCCTCTGAATCGCCT 61.791 63.158 0.00 0.00 0.00 5.52
5481 20136 1.524482 GCCTCCTCTGAATCGCCTT 59.476 57.895 0.00 0.00 0.00 4.35
5482 20137 0.107459 GCCTCCTCTGAATCGCCTTT 60.107 55.000 0.00 0.00 0.00 3.11
5483 20138 1.661341 CCTCCTCTGAATCGCCTTTG 58.339 55.000 0.00 0.00 0.00 2.77
5484 20139 1.065854 CCTCCTCTGAATCGCCTTTGT 60.066 52.381 0.00 0.00 0.00 2.83
5485 20140 2.168521 CCTCCTCTGAATCGCCTTTGTA 59.831 50.000 0.00 0.00 0.00 2.41
5486 20141 3.190874 CTCCTCTGAATCGCCTTTGTAC 58.809 50.000 0.00 0.00 0.00 2.90
5487 20142 1.927174 CCTCTGAATCGCCTTTGTACG 59.073 52.381 0.00 0.00 0.00 3.67
5488 20143 2.416836 CCTCTGAATCGCCTTTGTACGA 60.417 50.000 0.00 0.00 43.33 3.43
5489 20144 2.854777 CTCTGAATCGCCTTTGTACGAG 59.145 50.000 0.00 0.00 42.31 4.18
5490 20145 2.230508 TCTGAATCGCCTTTGTACGAGT 59.769 45.455 0.00 0.00 42.31 4.18
5491 20146 3.441222 TCTGAATCGCCTTTGTACGAGTA 59.559 43.478 0.00 0.00 42.31 2.59
5492 20147 3.766151 TGAATCGCCTTTGTACGAGTAG 58.234 45.455 0.00 0.00 42.31 2.57
5493 20148 2.865343 ATCGCCTTTGTACGAGTAGG 57.135 50.000 0.00 0.00 42.31 3.18
5498 20153 3.152261 CCTTTGTACGAGTAGGCTCTG 57.848 52.381 0.00 0.00 39.53 3.35
5499 20154 2.753452 CCTTTGTACGAGTAGGCTCTGA 59.247 50.000 0.00 0.00 39.53 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.098355 CGGTGAAATCAGTCTCTTAATGATTAA 57.902 33.333 1.63 0.00 41.56 1.40
51 53 4.647424 TTTCTTGCAAAGTCGGTGAAAT 57.353 36.364 0.00 0.00 46.34 2.17
179 181 9.360093 ACACGAAATTTTGATTGTGTAAAAGAA 57.640 25.926 12.54 0.00 38.65 2.52
180 182 8.802856 CACACGAAATTTTGATTGTGTAAAAGA 58.197 29.630 12.54 0.00 38.40 2.52
181 183 8.591312 ACACACGAAATTTTGATTGTGTAAAAG 58.409 29.630 23.48 11.12 44.30 2.27
182 184 8.467402 ACACACGAAATTTTGATTGTGTAAAA 57.533 26.923 23.48 0.00 44.30 1.52
185 187 7.755373 TCAAACACACGAAATTTTGATTGTGTA 59.245 29.630 24.37 13.35 45.13 2.90
187 189 6.987223 TCAAACACACGAAATTTTGATTGTG 58.013 32.000 20.02 20.02 40.16 3.33
192 194 9.360093 AGTTATTTCAAACACACGAAATTTTGA 57.640 25.926 12.54 0.00 41.08 2.69
282 286 9.822185 AAGTGAAATAAGTGAAATCTGCTTTTT 57.178 25.926 0.00 0.00 0.00 1.94
287 291 7.362662 TCACAAGTGAAATAAGTGAAATCTGC 58.637 34.615 0.00 0.00 36.39 4.26
420 425 9.712305 TTGGAACTACTGAAATTGTTTTTGAAA 57.288 25.926 0.00 0.00 0.00 2.69
423 428 8.930760 TGTTTGGAACTACTGAAATTGTTTTTG 58.069 29.630 0.00 0.00 0.00 2.44
443 452 3.214696 AGGGAGTGAAGTCTTGTTTGG 57.785 47.619 0.00 0.00 0.00 3.28
476 485 5.597813 AAACGTGAAGCTAATTGTCTCAG 57.402 39.130 0.00 0.00 0.00 3.35
502 511 3.036819 GGGACGGAGGGAGTAGTTATTT 58.963 50.000 0.00 0.00 0.00 1.40
505 514 1.002069 TGGGACGGAGGGAGTAGTTA 58.998 55.000 0.00 0.00 0.00 2.24
506 515 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
508 517 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
509 518 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
510 519 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
511 520 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
512 521 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
513 522 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
514 523 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
515 524 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
516 525 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
561 570 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
562 571 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
563 572 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
564 573 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
565 574 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
567 576 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
568 577 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
569 578 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
570 579 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
571 580 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
572 581 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
573 582 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
574 583 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
575 584 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
576 585 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
577 586 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
578 587 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
579 588 2.378378 ATAACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
580 589 6.416631 AATAAATAACTACTCCCTCCGTCC 57.583 41.667 0.00 0.00 0.00 4.79
581 590 8.610035 CAAAAATAAATAACTACTCCCTCCGTC 58.390 37.037 0.00 0.00 0.00 4.79
582 591 8.323567 TCAAAAATAAATAACTACTCCCTCCGT 58.676 33.333 0.00 0.00 0.00 4.69
583 592 8.726870 TCAAAAATAAATAACTACTCCCTCCG 57.273 34.615 0.00 0.00 0.00 4.63
642 651 5.431420 AAACAACTCGTGCATATGAAACA 57.569 34.783 6.97 0.00 0.00 2.83
652 661 5.798434 ACTTTTCTGTAAAAACAACTCGTGC 59.202 36.000 0.00 0.00 34.26 5.34
819 2522 0.106708 TTGGATCAGTGCCGATAGCC 59.893 55.000 0.00 0.00 42.71 3.93
822 2525 1.000843 CCGATTGGATCAGTGCCGATA 59.999 52.381 0.00 0.00 37.49 2.92
853 2556 0.947180 GTTGACGCTACGCTGGGAAA 60.947 55.000 0.00 0.00 0.00 3.13
1218 3753 3.039526 AGAGGGAGGGAGGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
1220 3755 3.036959 GGAGAGGGAGGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
1334 3892 0.035630 CAGGTTGAGCTCCAGGAAGG 60.036 60.000 12.15 0.00 39.47 3.46
1544 4102 8.723311 TGTAATTAAAACATGGAAACTAGACGG 58.277 33.333 0.00 0.00 0.00 4.79
1565 4127 8.362639 AGTTCAATCTTTGCAGAACAATGTAAT 58.637 29.630 14.43 0.00 42.01 1.89
1566 4128 7.648908 CAGTTCAATCTTTGCAGAACAATGTAA 59.351 33.333 14.43 0.00 42.01 2.41
1567 4129 7.140705 CAGTTCAATCTTTGCAGAACAATGTA 58.859 34.615 14.43 0.00 42.01 2.29
1579 4180 6.963796 AGCTTTACTGACAGTTCAATCTTTG 58.036 36.000 14.50 0.00 0.00 2.77
1620 4234 5.473162 CCAAGTCAGACCACAATGTGATTTA 59.527 40.000 15.91 0.00 35.23 1.40
1656 4274 7.471721 TGCACAATCCTCTAAAATCAAATACG 58.528 34.615 0.00 0.00 0.00 3.06
1722 4340 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1723 4341 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1724 4342 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1725 4343 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1726 4344 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1727 4345 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1728 4346 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1729 4347 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
1730 4348 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
1731 4349 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
1739 4357 9.530633 CTTAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 30.71 3.55
1740 4358 9.310716 ACTTAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.12 0.00 32.19 3.67
1767 4385 9.080097 AGTGTCTCAACTCTAGTATAACTTTGT 57.920 33.333 0.00 0.00 0.00 2.83
1768 4386 9.562583 GAGTGTCTCAACTCTAGTATAACTTTG 57.437 37.037 0.00 0.00 42.78 2.77
1770 4388 8.865420 TGAGTGTCTCAACTCTAGTATAACTT 57.135 34.615 5.97 0.00 45.69 2.66
1771 4389 9.469097 AATGAGTGTCTCAACTCTAGTATAACT 57.531 33.333 3.58 0.00 44.04 2.24
1781 4428 4.214332 GTCCCAAAATGAGTGTCTCAACTC 59.786 45.833 3.58 0.00 44.04 3.01
1787 4434 3.244700 CCTCTGTCCCAAAATGAGTGTCT 60.245 47.826 0.00 0.00 0.00 3.41
1788 4435 3.077359 CCTCTGTCCCAAAATGAGTGTC 58.923 50.000 0.00 0.00 0.00 3.67
1789 4436 2.224867 CCCTCTGTCCCAAAATGAGTGT 60.225 50.000 0.00 0.00 0.00 3.55
1792 4439 2.307098 ACTCCCTCTGTCCCAAAATGAG 59.693 50.000 0.00 0.00 0.00 2.90
1793 4440 2.348472 ACTCCCTCTGTCCCAAAATGA 58.652 47.619 0.00 0.00 0.00 2.57
1794 4441 2.887151 ACTCCCTCTGTCCCAAAATG 57.113 50.000 0.00 0.00 0.00 2.32
1795 4442 4.111577 TCATACTCCCTCTGTCCCAAAAT 58.888 43.478 0.00 0.00 0.00 1.82
1797 4444 3.199442 TCATACTCCCTCTGTCCCAAA 57.801 47.619 0.00 0.00 0.00 3.28
1800 4447 4.455606 CAAAATCATACTCCCTCTGTCCC 58.544 47.826 0.00 0.00 0.00 4.46
1801 4448 3.879892 GCAAAATCATACTCCCTCTGTCC 59.120 47.826 0.00 0.00 0.00 4.02
1802 4449 4.517285 TGCAAAATCATACTCCCTCTGTC 58.483 43.478 0.00 0.00 0.00 3.51
1803 4450 4.574674 TGCAAAATCATACTCCCTCTGT 57.425 40.909 0.00 0.00 0.00 3.41
1804 4451 5.128205 TGATGCAAAATCATACTCCCTCTG 58.872 41.667 0.00 0.00 0.00 3.35
1805 4452 5.378230 TGATGCAAAATCATACTCCCTCT 57.622 39.130 0.00 0.00 0.00 3.69
1806 4453 5.591877 ACTTGATGCAAAATCATACTCCCTC 59.408 40.000 0.00 0.00 0.00 4.30
1807 4454 5.513233 ACTTGATGCAAAATCATACTCCCT 58.487 37.500 0.00 0.00 0.00 4.20
1808 4455 5.504665 CGACTTGATGCAAAATCATACTCCC 60.505 44.000 0.00 0.00 0.00 4.30
1810 4457 5.065218 ACCGACTTGATGCAAAATCATACTC 59.935 40.000 0.00 0.00 0.00 2.59
1939 4766 4.001618 TGGAGAACGATCAACATGTCAA 57.998 40.909 0.00 0.00 0.00 3.18
1951 4781 4.202482 TGGAATAAAACCCTTGGAGAACGA 60.202 41.667 0.00 0.00 0.00 3.85
1953 4783 5.714806 TGATGGAATAAAACCCTTGGAGAAC 59.285 40.000 0.00 0.00 0.00 3.01
1958 4788 4.381932 GCAGTGATGGAATAAAACCCTTGG 60.382 45.833 0.00 0.00 0.00 3.61
2060 4895 2.398588 CTATGCCCCAGACCTAACTGA 58.601 52.381 0.00 0.00 39.94 3.41
2492 12024 6.778834 TGATTGATGCCACTGATGTAAAAT 57.221 33.333 0.00 0.00 0.00 1.82
2635 13657 3.254903 ACAGCACGTATGTCACTGTAAGA 59.745 43.478 15.48 0.00 39.54 2.10
2685 13869 9.520515 AGTTAAAATGATCTTTCACTACCATGT 57.479 29.630 0.00 0.00 33.85 3.21
2716 13900 9.857656 AAATGATCTTTCACTACCATGTGATAT 57.142 29.630 0.00 0.00 45.03 1.63
2717 13901 9.685276 AAAATGATCTTTCACTACCATGTGATA 57.315 29.630 0.00 0.00 45.03 2.15
2718 13902 8.585471 AAAATGATCTTTCACTACCATGTGAT 57.415 30.769 0.00 0.00 45.03 3.06
2719 13903 9.513906 TTAAAATGATCTTTCACTACCATGTGA 57.486 29.630 0.00 0.00 44.17 3.58
2720 13904 9.559958 GTTAAAATGATCTTTCACTACCATGTG 57.440 33.333 0.00 0.00 39.15 3.21
2721 13905 9.520515 AGTTAAAATGATCTTTCACTACCATGT 57.479 29.630 0.00 0.00 33.85 3.21
2745 13929 9.770097 CTTTCACTACCATGTGATATGATAAGT 57.230 33.333 0.00 0.00 45.03 2.24
2746 13930 9.987272 TCTTTCACTACCATGTGATATGATAAG 57.013 33.333 0.00 0.00 45.03 1.73
2749 13933 8.654094 TGATCTTTCACTACCATGTGATATGAT 58.346 33.333 0.00 0.00 45.03 2.45
2750 13934 8.021898 TGATCTTTCACTACCATGTGATATGA 57.978 34.615 0.00 0.00 45.03 2.15
2751 13935 8.843885 ATGATCTTTCACTACCATGTGATATG 57.156 34.615 0.00 0.00 45.03 1.78
2752 13936 9.857656 AAATGATCTTTCACTACCATGTGATAT 57.142 29.630 0.00 0.00 45.03 1.63
2753 13937 9.685276 AAAATGATCTTTCACTACCATGTGATA 57.315 29.630 0.00 0.00 45.03 2.15
2754 13938 8.585471 AAAATGATCTTTCACTACCATGTGAT 57.415 30.769 0.00 0.00 45.03 3.06
2755 13939 9.513906 TTAAAATGATCTTTCACTACCATGTGA 57.486 29.630 0.00 0.00 44.17 3.58
2756 13940 9.559958 GTTAAAATGATCTTTCACTACCATGTG 57.440 33.333 0.00 0.00 39.15 3.21
2757 13941 9.520515 AGTTAAAATGATCTTTCACTACCATGT 57.479 29.630 0.00 0.00 33.85 3.21
2769 13953 9.846248 GCACAGTTGATAAGTTAAAATGATCTT 57.154 29.630 2.65 0.00 0.00 2.40
2770 13954 9.013229 TGCACAGTTGATAAGTTAAAATGATCT 57.987 29.630 2.65 0.00 0.00 2.75
2771 13955 9.624697 TTGCACAGTTGATAAGTTAAAATGATC 57.375 29.630 2.65 0.00 0.00 2.92
2807 13991 6.644592 GCAAAGAAAACAAAGCATACATGGTA 59.355 34.615 0.00 0.00 37.57 3.25
2822 14245 1.407618 AGTGTTCCCCGCAAAGAAAAC 59.592 47.619 0.00 0.00 31.48 2.43
2847 14274 2.369203 TGTCATTACACCCACCGAAAGA 59.631 45.455 0.00 0.00 0.00 2.52
2871 14298 9.780186 TCAACAAGGGTAAAAAGAAAAAGAAAA 57.220 25.926 0.00 0.00 0.00 2.29
2917 14345 8.822855 CAACTAACACAACTACAGTGACAAATA 58.177 33.333 0.00 0.00 40.16 1.40
2972 14401 0.250038 CCATACCACTCCCTGCATCG 60.250 60.000 0.00 0.00 0.00 3.84
3082 14511 4.697352 GCTAAAGCTGGAATGTCTTTCTCA 59.303 41.667 0.00 0.00 38.21 3.27
3189 14618 4.272018 GTGGCAACTACTGAGAAGCATATG 59.728 45.833 0.00 0.00 37.61 1.78
3230 14663 7.721399 TCCTGGCCTGAATATAAAAAGAAGATC 59.279 37.037 11.88 0.00 0.00 2.75
3244 14677 1.075601 TGAAAGGTCCTGGCCTGAAT 58.924 50.000 11.88 1.57 39.17 2.57
3455 14891 1.305633 CTGGAGAGTGGAGGCAGGA 60.306 63.158 0.00 0.00 0.00 3.86
3630 15078 3.844577 ATCACAGCATTTCAGAAGCAC 57.155 42.857 0.00 0.00 0.00 4.40
3644 15092 9.294030 GCAGTAAAATTAGGAAATCAATCACAG 57.706 33.333 0.00 0.00 0.00 3.66
3855 15310 3.152341 CAGAAAAAGGCAGTCAGGATGT 58.848 45.455 0.00 0.00 37.40 3.06
3869 15324 6.162777 CCAGTGAGGAAAACAAACAGAAAAA 58.837 36.000 0.00 0.00 41.22 1.94
3921 15382 2.223377 ACGCAGTTTCTCACCGAAAATC 59.777 45.455 0.00 0.00 37.78 2.17
3951 15412 8.012957 TGTCATAAAAGTCTAATCTCTCCTCC 57.987 38.462 0.00 0.00 0.00 4.30
4042 15503 1.754226 CTTACCCTCCTCTGAGACTGC 59.246 57.143 6.17 0.00 41.42 4.40
4082 15543 5.432680 AGTGATTCATCAGAGACCAACAT 57.567 39.130 0.00 0.00 37.51 2.71
4083 15544 4.897509 AGTGATTCATCAGAGACCAACA 57.102 40.909 0.00 0.00 37.51 3.33
4087 15548 8.498054 TGAAATTAAGTGATTCATCAGAGACC 57.502 34.615 0.00 0.00 37.51 3.85
4088 15549 9.985318 CTTGAAATTAAGTGATTCATCAGAGAC 57.015 33.333 0.00 0.00 37.51 3.36
4091 15552 9.730705 AGACTTGAAATTAAGTGATTCATCAGA 57.269 29.630 0.00 0.00 40.78 3.27
4169 15631 1.618837 TCACCGTTCTCCTTCTCCTTG 59.381 52.381 0.00 0.00 0.00 3.61
4286 18260 4.625607 TTTCTTCTTCTCTGTCCCTTCC 57.374 45.455 0.00 0.00 0.00 3.46
4355 18335 3.499737 CCGTCGACATTGGCTGCC 61.500 66.667 17.16 12.87 0.00 4.85
4356 18336 4.166011 GCCGTCGACATTGGCTGC 62.166 66.667 21.43 6.65 45.40 5.25
4357 18337 3.853330 CGCCGTCGACATTGGCTG 61.853 66.667 24.44 16.48 46.67 4.85
4384 18364 6.465439 TCTTTTTCTTTTTCTTGGGAGTCC 57.535 37.500 0.00 0.00 0.00 3.85
4418 18398 1.513800 CTCGACAGACTCTGCAGCG 60.514 63.158 9.47 5.22 34.37 5.18
4466 18446 4.524749 CCTCGGTTTTCGACTTCTTTTTC 58.475 43.478 0.00 0.00 43.74 2.29
4478 18458 0.391263 AGTCATCGGCCTCGGTTTTC 60.391 55.000 0.00 0.00 36.95 2.29
4496 18476 5.804979 GCAGAACAAAGAGCTTCTAGTCTAG 59.195 44.000 0.00 0.00 0.00 2.43
4507 18494 4.494350 TTCATCAAGCAGAACAAAGAGC 57.506 40.909 0.00 0.00 0.00 4.09
4596 18586 6.126390 ACCACCATAGGATGATGAAAGATTCA 60.126 38.462 0.00 0.00 45.01 2.57
4597 18587 6.206243 CACCACCATAGGATGATGAAAGATTC 59.794 42.308 0.00 0.00 0.00 2.52
4598 18588 6.066690 CACCACCATAGGATGATGAAAGATT 58.933 40.000 0.00 0.00 0.00 2.40
4628 18621 6.103997 TCCACGTTATAGACCTCAAAATGTC 58.896 40.000 0.00 0.00 0.00 3.06
4647 18644 1.938577 CTCAATCCATGCTCTTCCACG 59.061 52.381 0.00 0.00 0.00 4.94
4669 18666 3.221771 ACAGCAAATAGTTGAACAGCCA 58.778 40.909 7.18 0.00 36.83 4.75
4686 18684 4.479619 CCAAGTGCTAATCAAGAAACAGC 58.520 43.478 0.00 0.00 0.00 4.40
4687 18685 4.761739 TCCCAAGTGCTAATCAAGAAACAG 59.238 41.667 0.00 0.00 0.00 3.16
4688 18686 4.724399 TCCCAAGTGCTAATCAAGAAACA 58.276 39.130 0.00 0.00 0.00 2.83
4689 18687 5.183904 ACATCCCAAGTGCTAATCAAGAAAC 59.816 40.000 0.00 0.00 0.00 2.78
4721 18815 0.889186 ACCCTCAACAACGCACATCC 60.889 55.000 0.00 0.00 0.00 3.51
4722 18816 0.238289 CACCCTCAACAACGCACATC 59.762 55.000 0.00 0.00 0.00 3.06
4723 18817 0.465460 ACACCCTCAACAACGCACAT 60.465 50.000 0.00 0.00 0.00 3.21
4724 18818 0.678366 AACACCCTCAACAACGCACA 60.678 50.000 0.00 0.00 0.00 4.57
4725 18819 0.454196 AAACACCCTCAACAACGCAC 59.546 50.000 0.00 0.00 0.00 5.34
4726 18820 1.178276 AAAACACCCTCAACAACGCA 58.822 45.000 0.00 0.00 0.00 5.24
4727 18821 3.636282 ATAAAACACCCTCAACAACGC 57.364 42.857 0.00 0.00 0.00 4.84
4728 18822 3.733727 GCAATAAAACACCCTCAACAACG 59.266 43.478 0.00 0.00 0.00 4.10
4729 18823 4.944048 AGCAATAAAACACCCTCAACAAC 58.056 39.130 0.00 0.00 0.00 3.32
4730 18824 5.355596 CAAGCAATAAAACACCCTCAACAA 58.644 37.500 0.00 0.00 0.00 2.83
4731 18825 4.202202 CCAAGCAATAAAACACCCTCAACA 60.202 41.667 0.00 0.00 0.00 3.33
4732 18826 4.202212 ACCAAGCAATAAAACACCCTCAAC 60.202 41.667 0.00 0.00 0.00 3.18
4741 18835 9.423061 AGATTTGACATAACCAAGCAATAAAAC 57.577 29.630 0.00 0.00 0.00 2.43
4793 18887 3.322828 AGAAGCCTCAAAATGTGTGCATT 59.677 39.130 0.00 0.00 46.38 3.56
4794 18888 2.895404 AGAAGCCTCAAAATGTGTGCAT 59.105 40.909 0.00 0.00 36.80 3.96
4821 18915 8.478066 TCCTCAATTCGATTCATCTTCTTCTAA 58.522 33.333 0.00 0.00 0.00 2.10
4829 19087 4.412796 TGCTCCTCAATTCGATTCATCT 57.587 40.909 0.00 0.00 0.00 2.90
4830 19088 4.514441 ACATGCTCCTCAATTCGATTCATC 59.486 41.667 0.00 0.00 0.00 2.92
4840 19098 2.089980 GTGCTCAACATGCTCCTCAAT 58.910 47.619 0.00 0.00 0.00 2.57
4841 19099 1.072806 AGTGCTCAACATGCTCCTCAA 59.927 47.619 0.00 0.00 0.00 3.02
4842 19100 0.689055 AGTGCTCAACATGCTCCTCA 59.311 50.000 0.00 0.00 0.00 3.86
4844 19102 2.168106 CTCTAGTGCTCAACATGCTCCT 59.832 50.000 0.00 0.00 0.00 3.69
4845 19103 2.093764 ACTCTAGTGCTCAACATGCTCC 60.094 50.000 0.00 0.00 0.00 4.70
4846 19104 3.119173 AGACTCTAGTGCTCAACATGCTC 60.119 47.826 0.00 0.00 0.00 4.26
4847 19105 2.830923 AGACTCTAGTGCTCAACATGCT 59.169 45.455 0.00 0.00 0.00 3.79
4848 19106 2.928757 CAGACTCTAGTGCTCAACATGC 59.071 50.000 0.00 0.00 0.00 4.06
4849 19107 2.928757 GCAGACTCTAGTGCTCAACATG 59.071 50.000 0.00 0.00 36.71 3.21
4850 19108 3.244033 GCAGACTCTAGTGCTCAACAT 57.756 47.619 0.00 0.00 36.71 2.71
4851 19109 2.732412 GCAGACTCTAGTGCTCAACA 57.268 50.000 0.00 0.00 36.71 3.33
4968 19340 2.742053 GCACAATCATGAGTAACCACGT 59.258 45.455 0.09 0.00 0.00 4.49
4971 19343 4.156373 CACATGCACAATCATGAGTAACCA 59.844 41.667 10.31 0.00 44.94 3.67
5010 19394 6.147581 GCCATTAGCATTCACATTATGACAG 58.852 40.000 0.00 0.00 42.97 3.51
5052 19642 0.536006 ACCAAGTCTGCAACTGAGGC 60.536 55.000 14.78 0.00 38.58 4.70
5054 19644 2.245159 TCACCAAGTCTGCAACTGAG 57.755 50.000 2.88 1.40 38.58 3.35
5069 19668 2.206576 ACAGGAGGAGCAAAATCACC 57.793 50.000 0.00 0.00 0.00 4.02
5082 19682 2.802816 CAGTCCAGACGAAAAACAGGAG 59.197 50.000 0.00 0.00 36.20 3.69
5105 19714 0.389426 CAGCAACCCAGCATTTCAGC 60.389 55.000 0.00 0.00 36.85 4.26
5130 19739 1.400242 GGAGCGAACACAGCATTTCAC 60.400 52.381 0.00 0.00 37.01 3.18
5145 19778 1.082690 GAGAAAAGGCAGAAGGAGCG 58.917 55.000 0.00 0.00 0.00 5.03
5173 19806 0.249911 AGAGCCAAGACGGTGTCAAC 60.250 55.000 0.00 0.00 36.97 3.18
5187 19824 1.483004 GGACCAAGAGTAGGAAGAGCC 59.517 57.143 0.00 0.00 0.00 4.70
5207 19844 2.191400 TCACTCCTCAAGGAAGGGATG 58.809 52.381 0.00 0.00 44.91 3.51
5208 19845 2.649742 TCACTCCTCAAGGAAGGGAT 57.350 50.000 0.00 0.00 44.91 3.85
5251 19888 1.446966 GTGGAGGAAGCGAGTGAGC 60.447 63.158 0.00 0.00 37.41 4.26
5254 19891 1.444553 GTCGTGGAGGAAGCGAGTG 60.445 63.158 0.00 0.00 35.22 3.51
5259 19896 2.435059 GCAGGTCGTGGAGGAAGC 60.435 66.667 0.00 0.00 0.00 3.86
5269 19906 3.374402 ACGAGGTGGAGCAGGTCG 61.374 66.667 0.00 0.00 36.71 4.79
5282 19919 1.354337 CGCTCATGGTGGTTCACGAG 61.354 60.000 0.00 0.00 34.83 4.18
5285 19922 1.639298 GCTCGCTCATGGTGGTTCAC 61.639 60.000 0.00 0.00 0.00 3.18
5295 19932 1.519719 GTTCAGGAGGCTCGCTCAT 59.480 57.895 8.69 0.00 0.00 2.90
5296 19933 2.650116 GGTTCAGGAGGCTCGCTCA 61.650 63.158 8.69 0.00 0.00 4.26
5297 19934 1.965754 ATGGTTCAGGAGGCTCGCTC 61.966 60.000 8.69 0.00 0.00 5.03
5298 19935 1.992277 ATGGTTCAGGAGGCTCGCT 60.992 57.895 8.69 4.02 0.00 4.93
5299 19936 1.817099 CATGGTTCAGGAGGCTCGC 60.817 63.158 8.69 1.48 0.00 5.03
5369 20016 0.747283 CAGCAGGCTGGATGGAGTTC 60.747 60.000 17.64 0.00 40.17 3.01
5385 20040 1.566563 CGCGTATGAGAATGCCAGC 59.433 57.895 0.00 0.00 0.00 4.85
5386 20041 0.877649 AGCGCGTATGAGAATGCCAG 60.878 55.000 8.43 0.00 0.00 4.85
5391 20046 3.366476 GGATACTCAGCGCGTATGAGAAT 60.366 47.826 34.72 22.54 45.80 2.40
5397 20052 1.202582 GATGGGATACTCAGCGCGTAT 59.797 52.381 8.43 3.64 0.00 3.06
5413 20068 2.728817 GTACCGCCTCTCCGATGG 59.271 66.667 0.00 0.00 0.00 3.51
5414 20069 2.331805 CGTACCGCCTCTCCGATG 59.668 66.667 0.00 0.00 0.00 3.84
5450 20105 1.206831 GGAGGCGCAACGAGTTTTC 59.793 57.895 10.83 0.00 0.00 2.29
5451 20106 1.227853 AGGAGGCGCAACGAGTTTT 60.228 52.632 10.83 0.00 0.00 2.43
5452 20107 1.668151 GAGGAGGCGCAACGAGTTT 60.668 57.895 10.83 0.00 0.00 2.66
5453 20108 2.048127 GAGGAGGCGCAACGAGTT 60.048 61.111 10.83 0.00 0.00 3.01
5454 20109 2.992114 AGAGGAGGCGCAACGAGT 60.992 61.111 10.83 0.00 0.00 4.18
5455 20110 2.492449 TTCAGAGGAGGCGCAACGAG 62.492 60.000 10.83 0.00 0.00 4.18
5456 20111 1.888436 ATTCAGAGGAGGCGCAACGA 61.888 55.000 10.83 0.00 0.00 3.85
5457 20112 1.424493 GATTCAGAGGAGGCGCAACG 61.424 60.000 10.83 0.00 0.00 4.10
5458 20113 1.424493 CGATTCAGAGGAGGCGCAAC 61.424 60.000 10.83 1.38 0.00 4.17
5459 20114 1.153568 CGATTCAGAGGAGGCGCAA 60.154 57.895 10.83 0.00 0.00 4.85
5460 20115 2.496341 CGATTCAGAGGAGGCGCA 59.504 61.111 10.83 0.00 0.00 6.09
5461 20116 2.964389 GCGATTCAGAGGAGGCGC 60.964 66.667 0.00 0.00 39.16 6.53
5462 20117 2.279784 GGCGATTCAGAGGAGGCG 60.280 66.667 0.00 0.00 0.00 5.52
5463 20118 0.107459 AAAGGCGATTCAGAGGAGGC 60.107 55.000 0.00 0.00 0.00 4.70
5464 20119 1.065854 ACAAAGGCGATTCAGAGGAGG 60.066 52.381 0.00 0.00 0.00 4.30
5465 20120 2.393271 ACAAAGGCGATTCAGAGGAG 57.607 50.000 0.00 0.00 0.00 3.69
5466 20121 2.416836 CGTACAAAGGCGATTCAGAGGA 60.417 50.000 0.00 0.00 0.00 3.71
5467 20122 1.927174 CGTACAAAGGCGATTCAGAGG 59.073 52.381 0.00 0.00 0.00 3.69
5468 20123 2.854777 CTCGTACAAAGGCGATTCAGAG 59.145 50.000 0.00 0.00 36.50 3.35
5469 20124 2.230508 ACTCGTACAAAGGCGATTCAGA 59.769 45.455 0.00 0.00 36.50 3.27
5470 20125 2.607187 ACTCGTACAAAGGCGATTCAG 58.393 47.619 0.00 0.00 36.50 3.02
5471 20126 2.736144 ACTCGTACAAAGGCGATTCA 57.264 45.000 0.00 0.00 36.50 2.57
5472 20127 3.114065 CCTACTCGTACAAAGGCGATTC 58.886 50.000 0.00 0.00 36.50 2.52
5473 20128 2.737679 GCCTACTCGTACAAAGGCGATT 60.738 50.000 8.49 0.00 44.63 3.34
5474 20129 1.202382 GCCTACTCGTACAAAGGCGAT 60.202 52.381 8.49 0.00 44.63 4.58
5475 20130 0.171903 GCCTACTCGTACAAAGGCGA 59.828 55.000 8.49 0.00 44.63 5.54
5476 20131 2.662150 GCCTACTCGTACAAAGGCG 58.338 57.895 8.49 0.00 44.63 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.