Multiple sequence alignment - TraesCS1B01G400400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G400400 chr1B 100.000 4768 0 0 1 4768 630924822 630920055 0.000000e+00 8805
1 TraesCS1B01G400400 chr1B 93.247 696 44 2 3 696 630930138 630929444 0.000000e+00 1022
2 TraesCS1B01G400400 chr5D 92.944 3770 177 34 698 4415 27052753 27056485 0.000000e+00 5406
3 TraesCS1B01G400400 chr5D 91.947 3365 197 27 1211 4505 27261857 27258497 0.000000e+00 4645
4 TraesCS1B01G400400 chr5D 93.885 1292 78 1 2555 3846 22796746 22798036 0.000000e+00 1947
5 TraesCS1B01G400400 chr5D 85.334 1241 161 11 1280 2505 26926558 26925324 0.000000e+00 1264
6 TraesCS1B01G400400 chr5D 79.030 1216 220 27 2557 3753 27261786 27260587 0.000000e+00 800
7 TraesCS1B01G400400 chr5D 77.751 1245 236 32 2528 3753 27053292 27054514 0.000000e+00 726
8 TraesCS1B01G400400 chr5D 76.582 1217 244 29 2565 3753 26926554 26925351 8.710000e-177 630
9 TraesCS1B01G400400 chr5D 93.557 357 21 2 4413 4768 27058257 27058612 9.090000e-147 531
10 TraesCS1B01G400400 chr5D 86.469 303 37 4 1280 1580 26968666 26968366 3.560000e-86 329
11 TraesCS1B01G400400 chr5A 94.491 3013 143 12 782 3790 18678640 18681633 0.000000e+00 4623
12 TraesCS1B01G400400 chr5A 90.573 1570 110 21 2555 4101 16414852 16413298 0.000000e+00 2045
13 TraesCS1B01G400400 chr5A 93.048 935 61 2 1572 2505 62978360 62977429 0.000000e+00 1363
14 TraesCS1B01G400400 chr5A 86.378 1248 164 3 1261 2505 18663555 18662311 0.000000e+00 1358
15 TraesCS1B01G400400 chr5A 87.000 600 38 14 3832 4391 18681632 18682231 1.450000e-179 640
16 TraesCS1B01G400400 chr7B 85.703 1231 148 15 1281 2505 595531031 595532239 0.000000e+00 1273
17 TraesCS1B01G400400 chr5B 84.814 1238 167 14 1280 2504 19456928 19455699 0.000000e+00 1225
18 TraesCS1B01G400400 chr5B 81.760 1250 205 12 1261 2505 19460232 19459001 0.000000e+00 1024
19 TraesCS1B01G400400 chr5B 87.156 218 19 7 959 1174 19553520 19553730 6.170000e-59 239
20 TraesCS1B01G400400 chr5B 79.670 182 25 6 3932 4111 19458736 19458565 2.330000e-23 121
21 TraesCS1B01G400400 chr3B 75.241 727 156 21 2565 3278 43313144 43313859 1.660000e-84 324
22 TraesCS1B01G400400 chr2A 75.801 281 59 6 3495 3769 50917408 50917685 2.990000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G400400 chr1B 630920055 630924822 4767 True 8805.0 8805 100.000000 1 4768 1 chr1B.!!$R1 4767
1 TraesCS1B01G400400 chr1B 630929444 630930138 694 True 1022.0 1022 93.247000 3 696 1 chr1B.!!$R2 693
2 TraesCS1B01G400400 chr5D 27258497 27261857 3360 True 2722.5 4645 85.488500 1211 4505 2 chr5D.!!$R3 3294
3 TraesCS1B01G400400 chr5D 27052753 27058612 5859 False 2221.0 5406 88.084000 698 4768 3 chr5D.!!$F2 4070
4 TraesCS1B01G400400 chr5D 22796746 22798036 1290 False 1947.0 1947 93.885000 2555 3846 1 chr5D.!!$F1 1291
5 TraesCS1B01G400400 chr5D 26925324 26926558 1234 True 947.0 1264 80.958000 1280 3753 2 chr5D.!!$R2 2473
6 TraesCS1B01G400400 chr5A 18678640 18682231 3591 False 2631.5 4623 90.745500 782 4391 2 chr5A.!!$F1 3609
7 TraesCS1B01G400400 chr5A 16413298 16414852 1554 True 2045.0 2045 90.573000 2555 4101 1 chr5A.!!$R1 1546
8 TraesCS1B01G400400 chr5A 62977429 62978360 931 True 1363.0 1363 93.048000 1572 2505 1 chr5A.!!$R3 933
9 TraesCS1B01G400400 chr5A 18662311 18663555 1244 True 1358.0 1358 86.378000 1261 2505 1 chr5A.!!$R2 1244
10 TraesCS1B01G400400 chr7B 595531031 595532239 1208 False 1273.0 1273 85.703000 1281 2505 1 chr7B.!!$F1 1224
11 TraesCS1B01G400400 chr5B 19455699 19460232 4533 True 790.0 1225 82.081333 1261 4111 3 chr5B.!!$R1 2850
12 TraesCS1B01G400400 chr3B 43313144 43313859 715 False 324.0 324 75.241000 2565 3278 1 chr3B.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.031178 GCAGACAAAGTGGGCAAGTG 59.969 55.0 0.0 0.0 0.00 3.16 F
556 557 0.034756 ATGCCATCGCCGCAGTAATA 59.965 50.0 0.0 0.0 40.15 0.98 F
586 587 0.036388 AGTATGTGTGGCCCGTTGAG 60.036 55.0 0.0 0.0 0.00 3.02 F
668 669 0.242286 TGTTTGTTTGTGCAGTGCGT 59.758 45.0 11.2 0.0 0.00 5.24 F
1730 1753 0.388520 GTCATTTTGCAAGACGGGCC 60.389 55.0 0.0 0.0 0.00 5.80 F
2601 5946 0.806868 CATGATGCGTGTCTTTGCCT 59.193 50.0 0.0 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1795 0.674895 ACGCCTTGATCTGGAGTTGC 60.675 55.000 9.08 0.0 33.95 4.17 R
2373 2399 1.069049 GCGATTATTGCCCAAGCCAAT 59.931 47.619 0.00 0.0 38.69 3.16 R
2563 4609 1.007118 TGATGTCCTCTGGTAGCTCCA 59.993 52.381 0.00 0.0 45.01 3.86 R
2601 5946 0.719015 AGGTCAGGGATCTCAAGGGA 59.281 55.000 0.00 0.0 0.00 4.20 R
2750 6095 0.171455 CCACGAGGCTGTAGAGACAC 59.829 60.000 0.00 0.0 0.00 3.67 R
4151 7653 1.268999 GCTCCAAACAACAACATCGCA 60.269 47.619 0.00 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.261250 AGACATTGCTGCCTCCTTG 57.739 52.632 0.00 0.00 0.00 3.61
87 88 2.676342 GCACCCGTAAGTAATCAAGTGG 59.324 50.000 0.00 0.00 0.00 4.00
93 94 3.126343 CGTAAGTAATCAAGTGGCCCAAC 59.874 47.826 0.00 0.00 0.00 3.77
100 101 0.604578 CAAGTGGCCCAACAGGAATG 59.395 55.000 0.00 0.00 38.24 2.67
134 135 2.177594 GACCCTGGTGCTCAGTGAGG 62.178 65.000 21.54 6.53 41.83 3.86
139 140 2.431683 GTGCTCAGTGAGGCCCAA 59.568 61.111 21.54 0.00 0.00 4.12
140 141 1.001641 GTGCTCAGTGAGGCCCAAT 60.002 57.895 21.54 0.00 0.00 3.16
161 162 2.957680 TGGTCATGTTTGTCTGTTGCAT 59.042 40.909 0.00 0.00 0.00 3.96
171 172 4.335400 TGTCTGTTGCATAGAAGACACA 57.665 40.909 13.96 1.27 43.01 3.72
188 189 0.031994 ACATGCTTGGACGGTTTTGC 59.968 50.000 4.44 0.00 0.00 3.68
189 190 0.314935 CATGCTTGGACGGTTTTGCT 59.685 50.000 0.00 0.00 0.00 3.91
190 191 0.314935 ATGCTTGGACGGTTTTGCTG 59.685 50.000 0.00 0.00 0.00 4.41
191 192 1.661509 GCTTGGACGGTTTTGCTGC 60.662 57.895 0.00 0.00 0.00 5.25
192 193 1.007387 CTTGGACGGTTTTGCTGCC 60.007 57.895 0.00 0.00 0.00 4.85
197 198 3.030652 CGGTTTTGCTGCCGTCTT 58.969 55.556 0.00 0.00 42.73 3.01
198 199 1.370414 CGGTTTTGCTGCCGTCTTG 60.370 57.895 0.00 0.00 42.73 3.02
199 200 1.661509 GGTTTTGCTGCCGTCTTGC 60.662 57.895 0.00 0.00 0.00 4.01
200 201 1.360192 GTTTTGCTGCCGTCTTGCT 59.640 52.632 0.00 0.00 0.00 3.91
201 202 0.936297 GTTTTGCTGCCGTCTTGCTG 60.936 55.000 0.00 0.00 0.00 4.41
205 206 4.284123 CTGCCGTCTTGCTGCTTA 57.716 55.556 0.00 0.00 0.00 3.09
206 207 2.772739 CTGCCGTCTTGCTGCTTAT 58.227 52.632 0.00 0.00 0.00 1.73
207 208 0.654683 CTGCCGTCTTGCTGCTTATC 59.345 55.000 0.00 0.00 0.00 1.75
208 209 0.036483 TGCCGTCTTGCTGCTTATCA 60.036 50.000 0.00 0.00 0.00 2.15
209 210 1.303309 GCCGTCTTGCTGCTTATCAT 58.697 50.000 0.00 0.00 0.00 2.45
210 211 1.003116 GCCGTCTTGCTGCTTATCATG 60.003 52.381 0.00 0.00 0.00 3.07
211 212 1.600957 CCGTCTTGCTGCTTATCATGG 59.399 52.381 0.00 0.00 0.00 3.66
212 213 2.554142 CGTCTTGCTGCTTATCATGGA 58.446 47.619 0.00 0.00 0.00 3.41
213 214 3.136763 CGTCTTGCTGCTTATCATGGAT 58.863 45.455 0.00 0.00 0.00 3.41
214 215 3.059120 CGTCTTGCTGCTTATCATGGATG 60.059 47.826 0.00 0.00 0.00 3.51
215 216 4.132336 GTCTTGCTGCTTATCATGGATGA 58.868 43.478 0.00 0.00 41.70 2.92
216 217 4.213694 GTCTTGCTGCTTATCATGGATGAG 59.786 45.833 0.00 0.00 40.64 2.90
217 218 4.102054 TCTTGCTGCTTATCATGGATGAGA 59.898 41.667 0.00 0.00 40.64 3.27
218 219 3.736720 TGCTGCTTATCATGGATGAGAC 58.263 45.455 0.00 0.00 40.64 3.36
219 220 2.735663 GCTGCTTATCATGGATGAGACG 59.264 50.000 2.57 0.00 40.64 4.18
220 221 2.735663 CTGCTTATCATGGATGAGACGC 59.264 50.000 5.94 5.94 41.72 5.19
221 222 2.102925 TGCTTATCATGGATGAGACGCA 59.897 45.455 10.39 10.39 46.36 5.24
222 223 2.478134 GCTTATCATGGATGAGACGCAC 59.522 50.000 7.61 0.00 41.23 5.34
223 224 2.820059 TATCATGGATGAGACGCACC 57.180 50.000 0.00 0.00 40.64 5.01
224 225 0.107456 ATCATGGATGAGACGCACCC 59.893 55.000 0.00 0.00 40.64 4.61
225 226 1.221566 CATGGATGAGACGCACCCA 59.778 57.895 0.00 0.00 0.00 4.51
226 227 0.179037 CATGGATGAGACGCACCCAT 60.179 55.000 0.00 0.00 38.07 4.00
227 228 1.070601 CATGGATGAGACGCACCCATA 59.929 52.381 4.53 0.00 35.99 2.74
228 229 0.752658 TGGATGAGACGCACCCATAG 59.247 55.000 0.00 0.00 0.00 2.23
229 230 1.040646 GGATGAGACGCACCCATAGA 58.959 55.000 0.00 0.00 0.00 1.98
230 231 1.412710 GGATGAGACGCACCCATAGAA 59.587 52.381 0.00 0.00 0.00 2.10
231 232 2.474816 GATGAGACGCACCCATAGAAC 58.525 52.381 0.00 0.00 0.00 3.01
232 233 0.535335 TGAGACGCACCCATAGAACC 59.465 55.000 0.00 0.00 0.00 3.62
233 234 0.179081 GAGACGCACCCATAGAACCC 60.179 60.000 0.00 0.00 0.00 4.11
234 235 0.617820 AGACGCACCCATAGAACCCT 60.618 55.000 0.00 0.00 0.00 4.34
235 236 0.462047 GACGCACCCATAGAACCCTG 60.462 60.000 0.00 0.00 0.00 4.45
236 237 1.153168 CGCACCCATAGAACCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
237 238 1.622607 CGCACCCATAGAACCCTGGA 61.623 60.000 0.00 0.00 34.24 3.86
238 239 0.181350 GCACCCATAGAACCCTGGAG 59.819 60.000 0.00 0.00 34.24 3.86
239 240 1.584724 CACCCATAGAACCCTGGAGT 58.415 55.000 0.00 0.00 34.24 3.85
240 241 1.916181 CACCCATAGAACCCTGGAGTT 59.084 52.381 0.00 0.00 34.24 3.01
241 242 2.308866 CACCCATAGAACCCTGGAGTTT 59.691 50.000 0.00 0.00 34.24 2.66
242 243 2.308866 ACCCATAGAACCCTGGAGTTTG 59.691 50.000 0.00 0.00 34.24 2.93
243 244 2.576191 CCCATAGAACCCTGGAGTTTGA 59.424 50.000 0.00 0.00 34.24 2.69
244 245 3.610911 CCATAGAACCCTGGAGTTTGAC 58.389 50.000 0.00 0.00 34.24 3.18
245 246 3.009033 CCATAGAACCCTGGAGTTTGACA 59.991 47.826 0.00 0.00 34.24 3.58
246 247 4.324563 CCATAGAACCCTGGAGTTTGACAT 60.325 45.833 0.00 0.00 34.24 3.06
247 248 3.146104 AGAACCCTGGAGTTTGACATG 57.854 47.619 0.00 0.00 0.00 3.21
248 249 2.443255 AGAACCCTGGAGTTTGACATGT 59.557 45.455 0.00 0.00 0.00 3.21
249 250 2.568623 ACCCTGGAGTTTGACATGTC 57.431 50.000 19.27 19.27 0.00 3.06
250 251 1.774254 ACCCTGGAGTTTGACATGTCA 59.226 47.619 24.56 24.56 37.91 3.58
251 252 2.174639 ACCCTGGAGTTTGACATGTCAA 59.825 45.455 32.36 32.36 46.72 3.18
257 258 4.395519 TTGACATGTCAAGGCCGG 57.604 55.556 32.36 0.00 43.90 6.13
258 259 1.454104 TTGACATGTCAAGGCCGGT 59.546 52.632 32.36 0.00 43.90 5.28
259 260 0.605319 TTGACATGTCAAGGCCGGTC 60.605 55.000 32.36 0.00 43.90 4.79
260 261 1.296715 GACATGTCAAGGCCGGTCT 59.703 57.895 21.07 0.35 0.00 3.85
261 262 0.741221 GACATGTCAAGGCCGGTCTC 60.741 60.000 21.07 0.00 0.00 3.36
262 263 1.811266 CATGTCAAGGCCGGTCTCG 60.811 63.158 10.20 0.00 0.00 4.04
263 264 3.665675 ATGTCAAGGCCGGTCTCGC 62.666 63.158 10.20 2.88 34.56 5.03
266 267 4.473520 CAAGGCCGGTCTCGCCAT 62.474 66.667 10.20 0.00 35.86 4.40
267 268 4.162690 AAGGCCGGTCTCGCCATC 62.163 66.667 10.20 0.00 35.86 3.51
277 278 2.184322 TCGCCATCGAGCAGGAAC 59.816 61.111 5.60 0.00 40.21 3.62
278 279 2.125552 CGCCATCGAGCAGGAACA 60.126 61.111 5.60 0.00 38.10 3.18
279 280 2.456119 CGCCATCGAGCAGGAACAC 61.456 63.158 5.60 0.00 38.10 3.32
280 281 2.456119 GCCATCGAGCAGGAACACG 61.456 63.158 5.60 0.00 0.00 4.49
281 282 2.456119 CCATCGAGCAGGAACACGC 61.456 63.158 0.00 0.00 0.00 5.34
282 283 2.125512 ATCGAGCAGGAACACGCC 60.126 61.111 0.00 0.00 0.00 5.68
283 284 3.989698 ATCGAGCAGGAACACGCCG 62.990 63.158 0.00 0.00 0.00 6.46
298 299 2.589540 CCGGGGCACTGCTTGATA 59.410 61.111 0.00 0.00 0.00 2.15
299 300 1.524621 CCGGGGCACTGCTTGATAG 60.525 63.158 0.00 0.00 0.00 2.08
300 301 1.524621 CGGGGCACTGCTTGATAGG 60.525 63.158 0.00 0.00 0.00 2.57
301 302 1.609783 GGGGCACTGCTTGATAGGT 59.390 57.895 0.00 0.00 0.00 3.08
302 303 0.464554 GGGGCACTGCTTGATAGGTC 60.465 60.000 0.00 0.00 0.00 3.85
303 304 0.543749 GGGCACTGCTTGATAGGTCT 59.456 55.000 0.00 0.00 0.00 3.85
304 305 1.065126 GGGCACTGCTTGATAGGTCTT 60.065 52.381 0.00 0.00 0.00 3.01
305 306 2.284190 GGCACTGCTTGATAGGTCTTC 58.716 52.381 0.00 0.00 0.00 2.87
306 307 1.929836 GCACTGCTTGATAGGTCTTCG 59.070 52.381 0.00 0.00 0.00 3.79
307 308 1.929836 CACTGCTTGATAGGTCTTCGC 59.070 52.381 0.00 0.00 0.00 4.70
308 309 1.203928 CTGCTTGATAGGTCTTCGCG 58.796 55.000 0.00 0.00 0.00 5.87
309 310 0.179111 TGCTTGATAGGTCTTCGCGG 60.179 55.000 6.13 0.00 0.00 6.46
310 311 1.491505 GCTTGATAGGTCTTCGCGGC 61.492 60.000 6.13 0.00 0.00 6.53
311 312 0.103208 CTTGATAGGTCTTCGCGGCT 59.897 55.000 6.13 0.00 0.00 5.52
312 313 0.179111 TTGATAGGTCTTCGCGGCTG 60.179 55.000 6.13 0.00 0.00 4.85
313 314 1.951631 GATAGGTCTTCGCGGCTGC 60.952 63.158 7.70 7.70 37.91 5.25
314 315 2.629050 GATAGGTCTTCGCGGCTGCA 62.629 60.000 19.50 1.50 42.97 4.41
315 316 2.635229 ATAGGTCTTCGCGGCTGCAG 62.635 60.000 19.50 10.11 42.97 4.41
316 317 4.742201 GGTCTTCGCGGCTGCAGA 62.742 66.667 20.43 11.07 42.97 4.26
317 318 3.482783 GTCTTCGCGGCTGCAGAC 61.483 66.667 20.43 18.95 42.97 3.51
318 319 3.989787 TCTTCGCGGCTGCAGACA 61.990 61.111 22.03 0.00 42.97 3.41
319 320 3.043713 CTTCGCGGCTGCAGACAA 61.044 61.111 22.03 5.40 42.97 3.18
320 321 2.590291 TTCGCGGCTGCAGACAAA 60.590 55.556 22.03 7.70 42.97 2.83
321 322 2.504461 CTTCGCGGCTGCAGACAAAG 62.504 60.000 22.03 15.49 42.97 2.77
322 323 3.349006 CGCGGCTGCAGACAAAGT 61.349 61.111 22.03 0.00 42.97 2.66
323 324 2.253452 GCGGCTGCAGACAAAGTG 59.747 61.111 22.03 3.31 42.15 3.16
324 325 2.949106 CGGCTGCAGACAAAGTGG 59.051 61.111 22.03 0.00 0.00 4.00
325 326 2.620112 CGGCTGCAGACAAAGTGGG 61.620 63.158 22.03 0.00 0.00 4.61
326 327 2.647297 GCTGCAGACAAAGTGGGC 59.353 61.111 20.43 0.00 0.00 5.36
327 328 2.195567 GCTGCAGACAAAGTGGGCA 61.196 57.895 20.43 0.00 0.00 5.36
328 329 1.737355 GCTGCAGACAAAGTGGGCAA 61.737 55.000 20.43 0.00 33.58 4.52
329 330 0.313043 CTGCAGACAAAGTGGGCAAG 59.687 55.000 8.42 0.00 33.58 4.01
330 331 0.395586 TGCAGACAAAGTGGGCAAGT 60.396 50.000 0.00 0.00 0.00 3.16
331 332 0.031178 GCAGACAAAGTGGGCAAGTG 59.969 55.000 0.00 0.00 0.00 3.16
332 333 0.670162 CAGACAAAGTGGGCAAGTGG 59.330 55.000 0.00 0.00 0.00 4.00
333 334 1.109323 AGACAAAGTGGGCAAGTGGC 61.109 55.000 0.00 0.00 43.74 5.01
343 344 1.505353 GCAAGTGGCACAGATCTGC 59.495 57.895 22.83 15.22 41.80 4.26
344 345 1.239296 GCAAGTGGCACAGATCTGCA 61.239 55.000 22.83 9.93 41.80 4.41
345 346 1.460504 CAAGTGGCACAGATCTGCAT 58.539 50.000 22.83 0.73 41.80 3.96
346 347 1.132453 CAAGTGGCACAGATCTGCATG 59.868 52.381 22.83 15.07 41.80 4.06
347 348 0.327259 AGTGGCACAGATCTGCATGT 59.673 50.000 22.83 0.51 41.80 3.21
362 363 2.060326 CATGTGCTGCTTTGTCAAGG 57.940 50.000 0.00 0.00 0.00 3.61
363 364 0.963962 ATGTGCTGCTTTGTCAAGGG 59.036 50.000 0.00 0.00 0.00 3.95
364 365 1.108727 TGTGCTGCTTTGTCAAGGGG 61.109 55.000 0.00 0.00 0.00 4.79
365 366 0.823356 GTGCTGCTTTGTCAAGGGGA 60.823 55.000 0.00 0.00 0.00 4.81
366 367 0.112995 TGCTGCTTTGTCAAGGGGAT 59.887 50.000 0.00 0.00 0.00 3.85
367 368 0.529378 GCTGCTTTGTCAAGGGGATG 59.471 55.000 0.00 0.00 0.00 3.51
368 369 0.529378 CTGCTTTGTCAAGGGGATGC 59.471 55.000 0.00 0.00 0.00 3.91
369 370 0.178967 TGCTTTGTCAAGGGGATGCA 60.179 50.000 0.00 0.00 0.00 3.96
370 371 1.188863 GCTTTGTCAAGGGGATGCAT 58.811 50.000 0.00 0.00 0.00 3.96
371 372 1.551883 GCTTTGTCAAGGGGATGCATT 59.448 47.619 0.00 0.00 0.00 3.56
372 373 2.027837 GCTTTGTCAAGGGGATGCATTT 60.028 45.455 0.00 0.00 0.00 2.32
373 374 3.592059 CTTTGTCAAGGGGATGCATTTG 58.408 45.455 0.00 1.03 0.00 2.32
374 375 2.601240 TGTCAAGGGGATGCATTTGA 57.399 45.000 0.00 3.83 0.00 2.69
375 376 3.104519 TGTCAAGGGGATGCATTTGAT 57.895 42.857 13.21 0.00 32.76 2.57
376 377 2.761767 TGTCAAGGGGATGCATTTGATG 59.238 45.455 13.21 4.88 32.76 3.07
377 378 3.025978 GTCAAGGGGATGCATTTGATGA 58.974 45.455 13.21 6.86 32.76 2.92
378 379 3.025978 TCAAGGGGATGCATTTGATGAC 58.974 45.455 0.00 0.00 0.00 3.06
379 380 2.761767 CAAGGGGATGCATTTGATGACA 59.238 45.455 0.00 0.00 0.00 3.58
380 381 2.381911 AGGGGATGCATTTGATGACAC 58.618 47.619 0.00 0.00 0.00 3.67
381 382 2.024655 AGGGGATGCATTTGATGACACT 60.025 45.455 0.00 0.00 0.00 3.55
382 383 2.100252 GGGGATGCATTTGATGACACTG 59.900 50.000 0.00 0.00 0.00 3.66
383 384 2.100252 GGGATGCATTTGATGACACTGG 59.900 50.000 0.00 0.00 0.00 4.00
384 385 3.018856 GGATGCATTTGATGACACTGGA 58.981 45.455 0.00 0.00 0.00 3.86
385 386 3.444742 GGATGCATTTGATGACACTGGAA 59.555 43.478 0.00 0.00 0.00 3.53
386 387 4.439700 GGATGCATTTGATGACACTGGAAG 60.440 45.833 0.00 0.00 42.29 3.46
387 388 2.821378 TGCATTTGATGACACTGGAAGG 59.179 45.455 0.00 0.00 39.30 3.46
389 390 3.689347 CATTTGATGACACTGGAAGGGA 58.311 45.455 0.00 0.00 43.23 4.20
390 391 3.423539 TTTGATGACACTGGAAGGGAG 57.576 47.619 0.00 0.00 43.23 4.30
391 392 1.279496 TGATGACACTGGAAGGGAGG 58.721 55.000 0.00 0.00 43.23 4.30
392 393 1.280457 GATGACACTGGAAGGGAGGT 58.720 55.000 0.00 0.00 43.23 3.85
393 394 2.225522 TGATGACACTGGAAGGGAGGTA 60.226 50.000 0.00 0.00 43.23 3.08
394 395 2.409064 TGACACTGGAAGGGAGGTAA 57.591 50.000 0.00 0.00 43.23 2.85
395 396 2.696775 TGACACTGGAAGGGAGGTAAA 58.303 47.619 0.00 0.00 43.23 2.01
396 397 3.050089 TGACACTGGAAGGGAGGTAAAA 58.950 45.455 0.00 0.00 43.23 1.52
397 398 3.072476 TGACACTGGAAGGGAGGTAAAAG 59.928 47.826 0.00 0.00 43.23 2.27
398 399 2.375509 ACACTGGAAGGGAGGTAAAAGG 59.624 50.000 0.00 0.00 43.23 3.11
399 400 1.354705 ACTGGAAGGGAGGTAAAAGGC 59.645 52.381 0.00 0.00 39.30 4.35
400 401 1.354368 CTGGAAGGGAGGTAAAAGGCA 59.646 52.381 0.00 0.00 0.00 4.75
401 402 1.783979 TGGAAGGGAGGTAAAAGGCAA 59.216 47.619 0.00 0.00 0.00 4.52
402 403 2.225017 TGGAAGGGAGGTAAAAGGCAAG 60.225 50.000 0.00 0.00 0.00 4.01
403 404 2.447443 GAAGGGAGGTAAAAGGCAAGG 58.553 52.381 0.00 0.00 0.00 3.61
404 405 1.755200 AGGGAGGTAAAAGGCAAGGA 58.245 50.000 0.00 0.00 0.00 3.36
405 406 1.636003 AGGGAGGTAAAAGGCAAGGAG 59.364 52.381 0.00 0.00 0.00 3.69
406 407 1.341089 GGGAGGTAAAAGGCAAGGAGG 60.341 57.143 0.00 0.00 0.00 4.30
407 408 1.464734 GAGGTAAAAGGCAAGGAGGC 58.535 55.000 0.00 0.00 44.61 4.70
424 425 2.124983 CCATCCTGGCTGTCGTGG 60.125 66.667 0.00 0.00 0.00 4.94
425 426 2.659063 CCATCCTGGCTGTCGTGGA 61.659 63.158 0.00 0.00 0.00 4.02
426 427 1.153489 CATCCTGGCTGTCGTGGAG 60.153 63.158 0.78 0.00 31.59 3.86
427 428 3.023949 ATCCTGGCTGTCGTGGAGC 62.024 63.158 0.78 0.00 35.57 4.70
428 429 4.007644 CCTGGCTGTCGTGGAGCA 62.008 66.667 0.00 0.00 38.27 4.26
429 430 2.740055 CTGGCTGTCGTGGAGCAC 60.740 66.667 0.00 0.00 38.27 4.40
430 431 4.314440 TGGCTGTCGTGGAGCACC 62.314 66.667 0.00 0.00 38.27 5.01
431 432 4.314440 GGCTGTCGTGGAGCACCA 62.314 66.667 0.00 0.00 44.76 4.17
440 441 3.995526 TGGAGCACCATGATCGATC 57.004 52.632 18.72 18.72 41.77 3.69
441 442 0.394192 TGGAGCACCATGATCGATCC 59.606 55.000 22.31 5.96 41.77 3.36
442 443 0.668706 GGAGCACCATGATCGATCCG 60.669 60.000 22.31 13.20 32.73 4.18
443 444 0.668706 GAGCACCATGATCGATCCGG 60.669 60.000 22.31 22.65 0.00 5.14
444 445 2.320587 GCACCATGATCGATCCGGC 61.321 63.158 23.94 15.88 0.00 6.13
445 446 1.368950 CACCATGATCGATCCGGCT 59.631 57.895 23.94 12.78 0.00 5.52
446 447 0.250038 CACCATGATCGATCCGGCTT 60.250 55.000 23.94 8.87 0.00 4.35
447 448 0.469917 ACCATGATCGATCCGGCTTT 59.530 50.000 23.94 8.29 0.00 3.51
448 449 1.691976 ACCATGATCGATCCGGCTTTA 59.308 47.619 23.94 6.38 0.00 1.85
449 450 2.104111 ACCATGATCGATCCGGCTTTAA 59.896 45.455 23.94 5.72 0.00 1.52
450 451 2.480419 CCATGATCGATCCGGCTTTAAC 59.520 50.000 22.31 0.00 0.00 2.01
451 452 3.393800 CATGATCGATCCGGCTTTAACT 58.606 45.455 22.31 0.00 0.00 2.24
452 453 2.821546 TGATCGATCCGGCTTTAACTG 58.178 47.619 22.31 0.00 0.00 3.16
453 454 2.429250 TGATCGATCCGGCTTTAACTGA 59.571 45.455 22.31 0.00 0.00 3.41
454 455 3.069586 TGATCGATCCGGCTTTAACTGAT 59.930 43.478 22.31 0.00 0.00 2.90
455 456 2.821546 TCGATCCGGCTTTAACTGATG 58.178 47.619 0.00 0.00 0.00 3.07
456 457 1.261619 CGATCCGGCTTTAACTGATGC 59.738 52.381 0.00 0.00 0.00 3.91
457 458 1.261619 GATCCGGCTTTAACTGATGCG 59.738 52.381 0.00 0.00 0.00 4.73
458 459 0.036765 TCCGGCTTTAACTGATGCGT 60.037 50.000 0.00 0.00 0.00 5.24
459 460 1.205179 TCCGGCTTTAACTGATGCGTA 59.795 47.619 0.00 0.00 0.00 4.42
460 461 2.004017 CCGGCTTTAACTGATGCGTAA 58.996 47.619 0.00 0.00 0.00 3.18
461 462 2.030457 CCGGCTTTAACTGATGCGTAAG 59.970 50.000 0.00 0.00 43.44 2.34
462 463 2.927477 CGGCTTTAACTGATGCGTAAGA 59.073 45.455 0.00 0.00 43.02 2.10
463 464 3.369756 CGGCTTTAACTGATGCGTAAGAA 59.630 43.478 0.00 0.00 43.02 2.52
464 465 4.492570 CGGCTTTAACTGATGCGTAAGAAG 60.493 45.833 0.00 0.00 43.02 2.85
465 466 4.392138 GGCTTTAACTGATGCGTAAGAAGT 59.608 41.667 0.00 0.00 43.02 3.01
466 467 5.446073 GGCTTTAACTGATGCGTAAGAAGTC 60.446 44.000 0.00 0.00 43.02 3.01
467 468 5.721510 GCTTTAACTGATGCGTAAGAAGTCG 60.722 44.000 0.00 0.00 43.02 4.18
468 469 3.570926 AACTGATGCGTAAGAAGTCGA 57.429 42.857 0.00 0.00 43.02 4.20
469 470 3.138205 ACTGATGCGTAAGAAGTCGAG 57.862 47.619 0.00 0.00 43.02 4.04
470 471 1.849219 CTGATGCGTAAGAAGTCGAGC 59.151 52.381 0.00 0.00 43.02 5.03
471 472 0.840729 GATGCGTAAGAAGTCGAGCG 59.159 55.000 0.00 0.00 43.02 5.03
472 473 0.450583 ATGCGTAAGAAGTCGAGCGA 59.549 50.000 0.00 0.00 43.02 4.93
473 474 0.179197 TGCGTAAGAAGTCGAGCGAG 60.179 55.000 0.00 0.00 43.02 5.03
474 475 0.096628 GCGTAAGAAGTCGAGCGAGA 59.903 55.000 0.00 0.00 43.02 4.04
475 476 1.800399 CGTAAGAAGTCGAGCGAGAC 58.200 55.000 6.51 6.51 39.89 3.36
476 477 1.800399 GTAAGAAGTCGAGCGAGACG 58.200 55.000 8.55 0.00 45.26 4.18
491 492 4.943373 ACGCCTTTGGGGTCAATT 57.057 50.000 0.25 0.00 45.92 2.32
492 493 2.350738 ACGCCTTTGGGGTCAATTG 58.649 52.632 0.00 0.00 45.92 2.32
493 494 1.184970 ACGCCTTTGGGGTCAATTGG 61.185 55.000 5.42 0.00 45.92 3.16
494 495 0.897863 CGCCTTTGGGGTCAATTGGA 60.898 55.000 5.42 0.00 37.43 3.53
495 496 0.897621 GCCTTTGGGGTCAATTGGAG 59.102 55.000 5.42 0.00 37.43 3.86
496 497 1.560505 CCTTTGGGGTCAATTGGAGG 58.439 55.000 5.42 0.00 32.36 4.30
497 498 0.897621 CTTTGGGGTCAATTGGAGGC 59.102 55.000 5.42 0.00 32.28 4.70
498 499 0.486879 TTTGGGGTCAATTGGAGGCT 59.513 50.000 5.42 0.00 32.28 4.58
499 500 0.486879 TTGGGGTCAATTGGAGGCTT 59.513 50.000 5.42 0.00 0.00 4.35
500 501 0.039618 TGGGGTCAATTGGAGGCTTC 59.960 55.000 5.42 0.00 0.00 3.86
501 502 0.684479 GGGGTCAATTGGAGGCTTCC 60.684 60.000 8.18 8.18 44.31 3.46
502 503 0.684479 GGGTCAATTGGAGGCTTCCC 60.684 60.000 13.07 0.00 43.33 3.97
503 504 0.684479 GGTCAATTGGAGGCTTCCCC 60.684 60.000 13.07 0.80 43.33 4.81
513 514 4.821589 GCTTCCCCTCCGTCGCAG 62.822 72.222 0.00 0.00 0.00 5.18
514 515 4.821589 CTTCCCCTCCGTCGCAGC 62.822 72.222 0.00 0.00 0.00 5.25
538 539 3.798758 GGCGGAGATAGGCCTGAT 58.201 61.111 17.99 4.84 45.93 2.90
539 540 1.294780 GGCGGAGATAGGCCTGATG 59.705 63.158 17.99 0.00 45.93 3.07
540 541 1.375268 GCGGAGATAGGCCTGATGC 60.375 63.158 17.99 7.01 40.16 3.91
551 552 3.646976 CTGATGCCATCGCCGCAG 61.647 66.667 0.00 0.00 40.15 5.18
552 553 4.471908 TGATGCCATCGCCGCAGT 62.472 61.111 0.00 0.00 40.15 4.40
553 554 2.280119 GATGCCATCGCCGCAGTA 60.280 61.111 0.00 0.00 40.15 2.74
554 555 1.887242 GATGCCATCGCCGCAGTAA 60.887 57.895 0.00 0.00 40.15 2.24
555 556 1.227943 ATGCCATCGCCGCAGTAAT 60.228 52.632 0.00 0.00 40.15 1.89
556 557 0.034756 ATGCCATCGCCGCAGTAATA 59.965 50.000 0.00 0.00 40.15 0.98
557 558 0.034756 TGCCATCGCCGCAGTAATAT 59.965 50.000 0.00 0.00 0.00 1.28
558 559 1.156736 GCCATCGCCGCAGTAATATT 58.843 50.000 0.00 0.00 0.00 1.28
559 560 1.135972 GCCATCGCCGCAGTAATATTG 60.136 52.381 0.00 0.00 0.00 1.90
560 561 1.464608 CCATCGCCGCAGTAATATTGG 59.535 52.381 0.00 0.00 0.00 3.16
561 562 1.135972 CATCGCCGCAGTAATATTGGC 60.136 52.381 0.00 0.81 42.29 4.52
567 568 1.860676 GCAGTAATATTGGCGACCGA 58.139 50.000 0.00 0.00 0.00 4.69
568 569 1.792949 GCAGTAATATTGGCGACCGAG 59.207 52.381 0.00 0.00 0.00 4.63
569 570 2.802057 GCAGTAATATTGGCGACCGAGT 60.802 50.000 0.00 0.00 0.00 4.18
570 571 3.551454 GCAGTAATATTGGCGACCGAGTA 60.551 47.826 0.00 0.00 0.00 2.59
571 572 4.806330 CAGTAATATTGGCGACCGAGTAT 58.194 43.478 0.00 0.00 0.00 2.12
572 573 4.621460 CAGTAATATTGGCGACCGAGTATG 59.379 45.833 0.00 0.00 0.00 2.39
573 574 3.746045 AATATTGGCGACCGAGTATGT 57.254 42.857 0.00 0.00 0.00 2.29
574 575 2.502213 TATTGGCGACCGAGTATGTG 57.498 50.000 0.00 0.00 0.00 3.21
575 576 0.535335 ATTGGCGACCGAGTATGTGT 59.465 50.000 0.00 0.00 0.00 3.72
576 577 0.389296 TTGGCGACCGAGTATGTGTG 60.389 55.000 0.00 0.00 0.00 3.82
577 578 1.518572 GGCGACCGAGTATGTGTGG 60.519 63.158 0.00 0.00 0.00 4.17
578 579 2.165301 GCGACCGAGTATGTGTGGC 61.165 63.158 0.00 0.00 0.00 5.01
579 580 1.518572 CGACCGAGTATGTGTGGCC 60.519 63.158 0.00 0.00 0.00 5.36
580 581 1.153429 GACCGAGTATGTGTGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
581 582 2.202878 CCGAGTATGTGTGGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
582 583 2.577059 CGAGTATGTGTGGCCCGT 59.423 61.111 0.00 0.00 0.00 5.28
583 584 1.079405 CGAGTATGTGTGGCCCGTT 60.079 57.895 0.00 0.00 0.00 4.44
584 585 1.358725 CGAGTATGTGTGGCCCGTTG 61.359 60.000 0.00 0.00 0.00 4.10
585 586 0.036765 GAGTATGTGTGGCCCGTTGA 60.037 55.000 0.00 0.00 0.00 3.18
586 587 0.036388 AGTATGTGTGGCCCGTTGAG 60.036 55.000 0.00 0.00 0.00 3.02
587 588 1.024579 GTATGTGTGGCCCGTTGAGG 61.025 60.000 0.00 0.00 40.63 3.86
588 589 1.485294 TATGTGTGGCCCGTTGAGGT 61.485 55.000 0.00 0.00 38.74 3.85
589 590 2.978010 GTGTGGCCCGTTGAGGTG 60.978 66.667 0.00 0.00 38.74 4.00
590 591 4.263572 TGTGGCCCGTTGAGGTGG 62.264 66.667 0.00 0.00 38.74 4.61
591 592 3.948719 GTGGCCCGTTGAGGTGGA 61.949 66.667 0.00 0.00 38.74 4.02
592 593 3.636231 TGGCCCGTTGAGGTGGAG 61.636 66.667 0.00 0.00 38.74 3.86
593 594 4.410400 GGCCCGTTGAGGTGGAGG 62.410 72.222 0.00 0.00 38.74 4.30
594 595 3.319198 GCCCGTTGAGGTGGAGGA 61.319 66.667 0.00 0.00 38.74 3.71
595 596 2.890766 GCCCGTTGAGGTGGAGGAA 61.891 63.158 0.00 0.00 38.74 3.36
596 597 1.296715 CCCGTTGAGGTGGAGGAAG 59.703 63.158 0.00 0.00 38.74 3.46
597 598 1.376037 CCGTTGAGGTGGAGGAAGC 60.376 63.158 0.00 0.00 34.51 3.86
598 599 1.376037 CGTTGAGGTGGAGGAAGCC 60.376 63.158 0.00 0.00 0.00 4.35
599 600 1.376037 GTTGAGGTGGAGGAAGCCG 60.376 63.158 0.00 0.00 0.00 5.52
600 601 1.841556 TTGAGGTGGAGGAAGCCGT 60.842 57.895 0.00 0.00 0.00 5.68
601 602 1.827399 TTGAGGTGGAGGAAGCCGTC 61.827 60.000 0.00 0.00 0.00 4.79
602 603 3.358076 GAGGTGGAGGAAGCCGTCG 62.358 68.421 0.00 0.00 0.00 5.12
622 623 3.576356 GGATCACACGGCGCCATG 61.576 66.667 28.98 26.07 0.00 3.66
623 624 3.576356 GATCACACGGCGCCATGG 61.576 66.667 28.09 17.17 0.00 3.66
634 635 4.066139 GCCATGGCCTCCTTGGGT 62.066 66.667 27.24 0.00 45.54 4.51
635 636 2.043652 CCATGGCCTCCTTGGGTG 60.044 66.667 3.32 0.00 42.84 4.61
636 637 2.765969 CATGGCCTCCTTGGGTGT 59.234 61.111 3.32 0.00 36.00 4.16
637 638 1.679977 CATGGCCTCCTTGGGTGTG 60.680 63.158 3.32 0.00 36.00 3.82
638 639 1.852157 ATGGCCTCCTTGGGTGTGA 60.852 57.895 3.32 0.00 36.00 3.58
639 640 2.034221 GGCCTCCTTGGGTGTGAC 59.966 66.667 0.00 0.00 36.00 3.67
640 641 2.529744 GGCCTCCTTGGGTGTGACT 61.530 63.158 0.00 0.00 36.00 3.41
641 642 1.198759 GGCCTCCTTGGGTGTGACTA 61.199 60.000 0.00 0.00 36.00 2.59
642 643 0.250513 GCCTCCTTGGGTGTGACTAG 59.749 60.000 0.00 0.00 36.00 2.57
643 644 0.250513 CCTCCTTGGGTGTGACTAGC 59.749 60.000 0.00 0.00 0.00 3.42
644 645 1.270907 CTCCTTGGGTGTGACTAGCT 58.729 55.000 0.00 0.00 0.00 3.32
645 646 2.457598 CTCCTTGGGTGTGACTAGCTA 58.542 52.381 0.00 0.00 0.00 3.32
646 647 2.428890 CTCCTTGGGTGTGACTAGCTAG 59.571 54.545 19.44 19.44 0.00 3.42
647 648 1.134670 CCTTGGGTGTGACTAGCTAGC 60.135 57.143 20.91 6.62 0.00 3.42
648 649 1.827969 CTTGGGTGTGACTAGCTAGCT 59.172 52.381 23.12 23.12 0.00 3.32
649 650 1.938585 TGGGTGTGACTAGCTAGCTT 58.061 50.000 24.88 5.38 0.00 3.74
650 651 1.550524 TGGGTGTGACTAGCTAGCTTG 59.449 52.381 24.88 23.43 0.00 4.01
651 652 1.550976 GGGTGTGACTAGCTAGCTTGT 59.449 52.381 28.23 28.23 34.94 3.16
652 653 2.028020 GGGTGTGACTAGCTAGCTTGTT 60.028 50.000 28.43 15.07 32.61 2.83
653 654 3.557264 GGGTGTGACTAGCTAGCTTGTTT 60.557 47.826 28.43 10.72 32.61 2.83
654 655 3.433615 GGTGTGACTAGCTAGCTTGTTTG 59.566 47.826 28.43 14.27 32.61 2.93
655 656 4.058817 GTGTGACTAGCTAGCTTGTTTGT 58.941 43.478 28.43 16.91 32.61 2.83
656 657 4.511826 GTGTGACTAGCTAGCTTGTTTGTT 59.488 41.667 28.43 9.32 32.61 2.83
657 658 5.007724 GTGTGACTAGCTAGCTTGTTTGTTT 59.992 40.000 28.43 8.63 32.61 2.83
658 659 5.007626 TGTGACTAGCTAGCTTGTTTGTTTG 59.992 40.000 28.43 4.95 32.61 2.93
659 660 5.007724 GTGACTAGCTAGCTTGTTTGTTTGT 59.992 40.000 28.43 8.03 32.61 2.83
660 661 5.007626 TGACTAGCTAGCTTGTTTGTTTGTG 59.992 40.000 28.43 6.61 32.61 3.33
661 662 3.084070 AGCTAGCTTGTTTGTTTGTGC 57.916 42.857 12.68 0.00 0.00 4.57
662 663 2.426738 AGCTAGCTTGTTTGTTTGTGCA 59.573 40.909 12.68 0.00 0.00 4.57
663 664 2.791004 GCTAGCTTGTTTGTTTGTGCAG 59.209 45.455 7.70 0.00 0.00 4.41
664 665 3.734902 GCTAGCTTGTTTGTTTGTGCAGT 60.735 43.478 7.70 0.00 0.00 4.40
665 666 2.609350 AGCTTGTTTGTTTGTGCAGTG 58.391 42.857 0.00 0.00 0.00 3.66
666 667 1.060986 GCTTGTTTGTTTGTGCAGTGC 59.939 47.619 8.58 8.58 0.00 4.40
667 668 1.321148 CTTGTTTGTTTGTGCAGTGCG 59.679 47.619 11.20 0.00 0.00 5.34
668 669 0.242286 TGTTTGTTTGTGCAGTGCGT 59.758 45.000 11.20 0.00 0.00 5.24
669 670 1.468914 TGTTTGTTTGTGCAGTGCGTA 59.531 42.857 11.20 0.00 0.00 4.42
670 671 2.108700 GTTTGTTTGTGCAGTGCGTAG 58.891 47.619 11.20 0.00 0.00 3.51
690 691 7.639162 CGTAGCCTTAATTAATGAAGACGAT 57.361 36.000 13.46 0.35 0.00 3.73
691 692 7.721402 CGTAGCCTTAATTAATGAAGACGATC 58.279 38.462 13.46 0.00 0.00 3.69
692 693 7.595502 CGTAGCCTTAATTAATGAAGACGATCT 59.404 37.037 13.46 5.66 0.00 2.75
693 694 9.262358 GTAGCCTTAATTAATGAAGACGATCTT 57.738 33.333 13.46 0.00 39.87 2.40
694 695 8.147642 AGCCTTAATTAATGAAGACGATCTTG 57.852 34.615 13.46 0.00 36.73 3.02
695 696 7.770897 AGCCTTAATTAATGAAGACGATCTTGT 59.229 33.333 13.46 0.00 36.73 3.16
696 697 8.398665 GCCTTAATTAATGAAGACGATCTTGTT 58.601 33.333 13.46 0.00 36.73 2.83
711 712 6.803320 ACGATCTTGTTTGTTTATCAATGCAG 59.197 34.615 0.00 0.00 35.84 4.41
728 729 6.593770 TCAATGCAGCGAGACTTATTTCTTTA 59.406 34.615 0.00 0.00 0.00 1.85
804 806 9.983804 GAAATAGTAATCGTTTCCAGTAAAAGG 57.016 33.333 0.00 0.00 0.00 3.11
818 820 6.562608 TCCAGTAAAAGGCTGAATAGGGATAT 59.437 38.462 0.00 0.00 36.12 1.63
877 882 8.487313 ACAAGTGAAAAATAAAAACCAGAACC 57.513 30.769 0.00 0.00 0.00 3.62
1004 1015 2.232452 CCGTCTCAAGACTTCAGATGGT 59.768 50.000 17.03 0.00 42.66 3.55
1191 1202 1.208165 TTCCTTTCCCCTGGCTCTCC 61.208 60.000 0.00 0.00 0.00 3.71
1195 1206 1.281925 TTTCCCCTGGCTCTCCCATC 61.282 60.000 0.00 0.00 44.33 3.51
1248 1271 5.545588 TCTCTTCCAGTTCACTGAAGAATG 58.454 41.667 8.61 5.66 46.59 2.67
1602 1625 5.482908 ACGATATATCTGAAATGCACCTCC 58.517 41.667 10.93 0.00 0.00 4.30
1730 1753 0.388520 GTCATTTTGCAAGACGGGCC 60.389 55.000 0.00 0.00 0.00 5.80
1733 1756 1.047801 ATTTTGCAAGACGGGCCTTT 58.952 45.000 0.84 0.00 0.00 3.11
1751 1774 3.181497 CCTTTTTCACGCCATCGATCATT 60.181 43.478 0.00 0.00 39.41 2.57
1873 1899 1.412710 TCACCTCTCGTTTGCAAGAGT 59.587 47.619 13.62 0.64 37.84 3.24
1874 1900 2.626266 TCACCTCTCGTTTGCAAGAGTA 59.374 45.455 13.62 2.95 37.84 2.59
1875 1901 2.731976 CACCTCTCGTTTGCAAGAGTAC 59.268 50.000 13.62 2.71 37.84 2.73
1886 1912 3.719871 TGCAAGAGTACTAGGGGATGAA 58.280 45.455 0.00 0.00 0.00 2.57
2114 2140 8.856490 TGCTTGTTTCAAGATTTAAAGAGTTC 57.144 30.769 12.77 0.00 0.00 3.01
2182 2208 8.662141 ACATACTACGGAAATCAAATTACACAC 58.338 33.333 0.00 0.00 0.00 3.82
2255 2281 1.412079 TGCTGTTTCTTGGGCACAAT 58.588 45.000 0.00 0.00 35.73 2.71
2297 2323 4.530875 CCAAAGATTACCCTGCTCTCAAT 58.469 43.478 0.00 0.00 0.00 2.57
2373 2399 6.363065 AGTAGTCCTCGTGATATTGGAGTAA 58.637 40.000 0.00 0.00 36.58 2.24
2547 3222 1.107114 ATCACCGACTGAGGCTACAG 58.893 55.000 10.98 10.98 42.78 2.74
2583 4629 1.007118 TGGAGCTACCAGAGGACATCA 59.993 52.381 0.00 0.00 44.64 3.07
2601 5946 0.806868 CATGATGCGTGTCTTTGCCT 59.193 50.000 0.00 0.00 0.00 4.75
2672 6017 1.986413 CTCTGCCTACACTGCCCTT 59.014 57.895 0.00 0.00 0.00 3.95
2674 6019 0.835971 TCTGCCTACACTGCCCTTCA 60.836 55.000 0.00 0.00 0.00 3.02
2750 6095 0.095935 CTTCCAGCGAGAATGTTGCG 59.904 55.000 0.00 0.00 41.06 4.85
2787 6132 2.638363 GTGGAGAAGAGGGTTTACAGGT 59.362 50.000 0.00 0.00 0.00 4.00
2892 6237 3.833650 TGAAATGCACCTTGTCAATCCAT 59.166 39.130 0.00 0.00 0.00 3.41
2990 6335 3.780902 TGTCCACAAGTATGCATACTCG 58.219 45.455 33.71 27.40 42.47 4.18
3192 6537 1.830587 CTGGCTGCCACCTCACACTA 61.831 60.000 19.30 0.00 0.00 2.74
3236 6581 3.077359 GGATGGGCTATTGTATGCAGTC 58.923 50.000 0.00 0.00 0.00 3.51
3274 6619 7.939039 AGAAATTCACACCTTTGATCTTAGTGA 59.061 33.333 11.10 0.00 33.23 3.41
3280 6625 3.840666 ACCTTTGATCTTAGTGAGCCTGA 59.159 43.478 0.00 0.00 0.00 3.86
3590 6938 6.522054 TCTCAAGGAAAATCGTGTCTACTTT 58.478 36.000 0.00 0.00 0.00 2.66
3658 7006 4.379603 CGATATAGGACTACTTCGCTTGGG 60.380 50.000 1.46 0.00 0.00 4.12
3941 7398 0.108138 GGAGGCTGTATCGTGCTGTT 60.108 55.000 0.00 0.00 0.00 3.16
3987 7447 2.290641 AGCTTCATGGACGTGTTTGTTC 59.709 45.455 0.00 0.00 0.00 3.18
4007 7467 3.033909 TCTATCATGTGTGGGACTCTGG 58.966 50.000 0.00 0.00 0.00 3.86
4063 7543 6.151985 TGTGTGGTTGTGTCTTTTTATGACTT 59.848 34.615 0.00 0.00 35.63 3.01
4112 7614 7.289587 ACTTTGTTATGCTTGTTTTGTTGTC 57.710 32.000 0.00 0.00 0.00 3.18
4147 7649 2.669300 TTTGCAAGCTGCTGTTTTGA 57.331 40.000 1.35 0.00 45.31 2.69
4151 7653 1.202452 GCAAGCTGCTGTTTTGAACCT 60.202 47.619 1.35 0.00 40.96 3.50
4155 7657 0.662619 CTGCTGTTTTGAACCTGCGA 59.337 50.000 0.00 0.00 34.18 5.10
4210 7715 7.526860 GCTCCTATGAGATAGATGTGTTCCAAT 60.527 40.741 0.00 0.00 41.42 3.16
4216 7721 7.855375 TGAGATAGATGTGTTCCAATTCTTCT 58.145 34.615 0.00 0.00 0.00 2.85
4224 7729 5.299279 TGTGTTCCAATTCTTCTCCTTTGTC 59.701 40.000 0.00 0.00 0.00 3.18
4239 7747 4.946772 TCCTTTGTCAGTGTTGTTCATTCA 59.053 37.500 0.00 0.00 0.00 2.57
4286 7796 2.810274 TCTCTGTGATTGCTTGCTGTTC 59.190 45.455 0.00 0.00 0.00 3.18
4354 7868 5.080969 AGCATGAATGTAAATTGCTGCTT 57.919 34.783 0.00 0.00 41.79 3.91
4546 9837 8.684386 TGGCCTGATTATTATATTTTGTCGAA 57.316 30.769 3.32 0.00 0.00 3.71
4577 9868 6.295719 ACTTATAGGTTCGTTCTGGACATT 57.704 37.500 0.00 0.00 0.00 2.71
4602 9893 8.213518 TGTTTTGATAATGCAGGTAGAAGATC 57.786 34.615 0.00 0.00 0.00 2.75
4616 9907 3.330267 AGAAGATCTCCGTGCAAAGAAC 58.670 45.455 0.00 0.00 0.00 3.01
4618 9909 0.095417 GATCTCCGTGCAAAGAACGC 59.905 55.000 0.00 0.00 39.69 4.84
4626 9917 1.372128 GCAAAGAACGCCAAGCTGG 60.372 57.895 0.00 0.00 41.55 4.85
4657 9948 3.078837 GACGACCAGGGCAAGAAAATTA 58.921 45.455 0.00 0.00 0.00 1.40
4680 9971 0.400213 CAAACTGCTCTGGTACCCCA 59.600 55.000 10.07 0.48 38.87 4.96
4695 9986 1.619332 ACCCCAGTCTTTCTCTTCGTC 59.381 52.381 0.00 0.00 0.00 4.20
4701 9992 3.978217 CAGTCTTTCTCTTCGTCTGTGAC 59.022 47.826 0.00 0.00 0.00 3.67
4728 10019 2.526304 TTGTCGTGCTCTTGTTAGCT 57.474 45.000 0.00 0.00 43.19 3.32
4748 10039 1.685224 GGTGGAAGCAGGATCACCA 59.315 57.895 6.48 0.00 46.39 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.323178 CCAAGGAGGCAGCAATGTCT 60.323 55.000 0.00 0.00 0.00 3.41
1 2 0.322816 TCCAAGGAGGCAGCAATGTC 60.323 55.000 0.00 0.00 37.29 3.06
18 19 1.134848 GCTCACTCTCATGGTCTGTCC 60.135 57.143 0.00 0.00 0.00 4.02
80 81 0.482446 ATTCCTGTTGGGCCACTTGA 59.518 50.000 5.23 0.00 34.39 3.02
87 88 0.734889 CGACATCATTCCTGTTGGGC 59.265 55.000 0.00 0.00 34.39 5.36
93 94 1.293924 GGCTGACGACATCATTCCTG 58.706 55.000 0.00 0.00 36.48 3.86
134 135 1.895131 AGACAAACATGACCATTGGGC 59.105 47.619 7.78 4.17 37.90 5.36
139 140 2.957680 TGCAACAGACAAACATGACCAT 59.042 40.909 0.00 0.00 0.00 3.55
140 141 2.373224 TGCAACAGACAAACATGACCA 58.627 42.857 0.00 0.00 0.00 4.02
161 162 2.353704 CCGTCCAAGCATGTGTCTTCTA 60.354 50.000 0.00 0.00 0.00 2.10
171 172 0.314935 CAGCAAAACCGTCCAAGCAT 59.685 50.000 0.00 0.00 0.00 3.79
188 189 0.654683 GATAAGCAGCAAGACGGCAG 59.345 55.000 0.00 0.00 42.62 4.85
189 190 0.036483 TGATAAGCAGCAAGACGGCA 60.036 50.000 0.00 0.00 42.62 5.69
190 191 1.003116 CATGATAAGCAGCAAGACGGC 60.003 52.381 0.00 0.00 40.15 5.68
191 192 1.600957 CCATGATAAGCAGCAAGACGG 59.399 52.381 0.00 0.00 0.00 4.79
192 193 2.554142 TCCATGATAAGCAGCAAGACG 58.446 47.619 0.00 0.00 0.00 4.18
193 194 4.132336 TCATCCATGATAAGCAGCAAGAC 58.868 43.478 0.00 0.00 0.00 3.01
194 195 4.102054 TCTCATCCATGATAAGCAGCAAGA 59.898 41.667 0.00 0.00 36.02 3.02
195 196 4.213694 GTCTCATCCATGATAAGCAGCAAG 59.786 45.833 0.00 0.00 36.02 4.01
196 197 4.132336 GTCTCATCCATGATAAGCAGCAA 58.868 43.478 0.00 0.00 36.02 3.91
197 198 3.736720 GTCTCATCCATGATAAGCAGCA 58.263 45.455 0.00 0.00 36.02 4.41
198 199 2.735663 CGTCTCATCCATGATAAGCAGC 59.264 50.000 0.00 0.00 36.02 5.25
199 200 2.735663 GCGTCTCATCCATGATAAGCAG 59.264 50.000 0.00 0.00 37.94 4.24
200 201 2.102925 TGCGTCTCATCCATGATAAGCA 59.897 45.455 10.19 10.19 42.54 3.91
201 202 2.478134 GTGCGTCTCATCCATGATAAGC 59.522 50.000 0.00 6.08 38.30 3.09
202 203 3.062763 GGTGCGTCTCATCCATGATAAG 58.937 50.000 0.00 0.00 36.02 1.73
203 204 2.224281 GGGTGCGTCTCATCCATGATAA 60.224 50.000 0.00 0.00 45.60 1.75
204 205 1.344438 GGGTGCGTCTCATCCATGATA 59.656 52.381 0.00 0.00 45.60 2.15
205 206 0.107456 GGGTGCGTCTCATCCATGAT 59.893 55.000 0.00 0.00 45.60 2.45
206 207 1.522092 GGGTGCGTCTCATCCATGA 59.478 57.895 0.00 0.00 45.60 3.07
207 208 4.131376 GGGTGCGTCTCATCCATG 57.869 61.111 0.00 0.00 45.60 3.66
210 211 1.040646 TCTATGGGTGCGTCTCATCC 58.959 55.000 0.00 0.00 46.51 3.51
211 212 2.474816 GTTCTATGGGTGCGTCTCATC 58.525 52.381 0.00 0.00 38.36 2.92
212 213 1.139058 GGTTCTATGGGTGCGTCTCAT 59.861 52.381 0.05 0.05 40.75 2.90
213 214 0.535335 GGTTCTATGGGTGCGTCTCA 59.465 55.000 0.00 0.00 0.00 3.27
214 215 0.179081 GGGTTCTATGGGTGCGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
215 216 0.617820 AGGGTTCTATGGGTGCGTCT 60.618 55.000 0.00 0.00 0.00 4.18
216 217 0.462047 CAGGGTTCTATGGGTGCGTC 60.462 60.000 0.00 0.00 0.00 5.19
217 218 1.602237 CAGGGTTCTATGGGTGCGT 59.398 57.895 0.00 0.00 0.00 5.24
218 219 1.153168 CCAGGGTTCTATGGGTGCG 60.153 63.158 0.00 0.00 32.63 5.34
219 220 0.181350 CTCCAGGGTTCTATGGGTGC 59.819 60.000 0.00 0.00 37.19 5.01
220 221 1.584724 ACTCCAGGGTTCTATGGGTG 58.415 55.000 0.00 0.00 37.19 4.61
221 222 2.308866 CAAACTCCAGGGTTCTATGGGT 59.691 50.000 0.00 0.00 37.19 4.51
222 223 2.576191 TCAAACTCCAGGGTTCTATGGG 59.424 50.000 0.00 0.00 37.19 4.00
223 224 3.009033 TGTCAAACTCCAGGGTTCTATGG 59.991 47.826 0.00 0.00 37.97 2.74
224 225 4.286297 TGTCAAACTCCAGGGTTCTATG 57.714 45.455 0.00 0.00 0.00 2.23
225 226 4.289672 ACATGTCAAACTCCAGGGTTCTAT 59.710 41.667 0.00 0.00 0.00 1.98
226 227 3.650942 ACATGTCAAACTCCAGGGTTCTA 59.349 43.478 0.00 0.00 0.00 2.10
227 228 2.443255 ACATGTCAAACTCCAGGGTTCT 59.557 45.455 0.00 0.00 0.00 3.01
228 229 2.814336 GACATGTCAAACTCCAGGGTTC 59.186 50.000 21.07 0.00 0.00 3.62
229 230 2.174639 TGACATGTCAAACTCCAGGGTT 59.825 45.455 26.02 0.00 36.53 4.11
230 231 1.774254 TGACATGTCAAACTCCAGGGT 59.226 47.619 26.02 0.00 36.53 4.34
231 232 2.566833 TGACATGTCAAACTCCAGGG 57.433 50.000 26.02 0.00 36.53 4.45
240 241 0.605319 GACCGGCCTTGACATGTCAA 60.605 55.000 33.20 33.20 46.27 3.18
241 242 1.003839 GACCGGCCTTGACATGTCA 60.004 57.895 24.56 24.56 37.91 3.58
242 243 0.741221 GAGACCGGCCTTGACATGTC 60.741 60.000 19.27 19.27 0.00 3.06
243 244 1.296715 GAGACCGGCCTTGACATGT 59.703 57.895 0.00 0.00 0.00 3.21
244 245 1.811266 CGAGACCGGCCTTGACATG 60.811 63.158 0.00 0.00 0.00 3.21
245 246 2.579201 CGAGACCGGCCTTGACAT 59.421 61.111 0.00 0.00 0.00 3.06
246 247 4.373116 GCGAGACCGGCCTTGACA 62.373 66.667 9.58 0.00 36.06 3.58
260 261 2.184322 GTTCCTGCTCGATGGCGA 59.816 61.111 0.00 0.00 45.71 5.54
261 262 2.125552 TGTTCCTGCTCGATGGCG 60.126 61.111 0.00 0.00 39.35 5.69
262 263 2.456119 CGTGTTCCTGCTCGATGGC 61.456 63.158 0.00 0.00 0.00 4.40
263 264 2.456119 GCGTGTTCCTGCTCGATGG 61.456 63.158 0.00 0.00 0.00 3.51
264 265 2.456119 GGCGTGTTCCTGCTCGATG 61.456 63.158 0.00 0.00 0.00 3.84
265 266 2.125512 GGCGTGTTCCTGCTCGAT 60.126 61.111 0.00 0.00 0.00 3.59
266 267 4.717629 CGGCGTGTTCCTGCTCGA 62.718 66.667 0.00 0.00 0.00 4.04
280 281 3.697439 TATCAAGCAGTGCCCCGGC 62.697 63.158 12.58 0.00 42.35 6.13
281 282 1.524621 CTATCAAGCAGTGCCCCGG 60.525 63.158 12.58 0.00 0.00 5.73
282 283 1.524621 CCTATCAAGCAGTGCCCCG 60.525 63.158 12.58 0.00 0.00 5.73
283 284 0.464554 GACCTATCAAGCAGTGCCCC 60.465 60.000 12.58 0.00 0.00 5.80
284 285 0.543749 AGACCTATCAAGCAGTGCCC 59.456 55.000 12.58 0.00 0.00 5.36
285 286 2.284190 GAAGACCTATCAAGCAGTGCC 58.716 52.381 12.58 0.00 0.00 5.01
286 287 1.929836 CGAAGACCTATCAAGCAGTGC 59.070 52.381 7.13 7.13 0.00 4.40
287 288 1.929836 GCGAAGACCTATCAAGCAGTG 59.070 52.381 0.00 0.00 0.00 3.66
288 289 1.469940 CGCGAAGACCTATCAAGCAGT 60.470 52.381 0.00 0.00 0.00 4.40
289 290 1.203928 CGCGAAGACCTATCAAGCAG 58.796 55.000 0.00 0.00 0.00 4.24
290 291 0.179111 CCGCGAAGACCTATCAAGCA 60.179 55.000 8.23 0.00 0.00 3.91
291 292 1.491505 GCCGCGAAGACCTATCAAGC 61.492 60.000 8.23 0.00 0.00 4.01
292 293 0.103208 AGCCGCGAAGACCTATCAAG 59.897 55.000 8.23 0.00 0.00 3.02
293 294 0.179111 CAGCCGCGAAGACCTATCAA 60.179 55.000 8.23 0.00 0.00 2.57
294 295 1.437573 CAGCCGCGAAGACCTATCA 59.562 57.895 8.23 0.00 0.00 2.15
295 296 1.951631 GCAGCCGCGAAGACCTATC 60.952 63.158 8.23 0.00 0.00 2.08
296 297 2.107141 GCAGCCGCGAAGACCTAT 59.893 61.111 8.23 0.00 0.00 2.57
297 298 3.356639 CTGCAGCCGCGAAGACCTA 62.357 63.158 8.23 0.00 42.97 3.08
298 299 4.749310 CTGCAGCCGCGAAGACCT 62.749 66.667 8.23 0.00 42.97 3.85
299 300 4.742201 TCTGCAGCCGCGAAGACC 62.742 66.667 8.23 0.00 42.97 3.85
300 301 3.482783 GTCTGCAGCCGCGAAGAC 61.483 66.667 8.23 8.81 42.97 3.01
301 302 2.987282 TTTGTCTGCAGCCGCGAAGA 62.987 55.000 8.23 0.00 42.97 2.87
302 303 2.504461 CTTTGTCTGCAGCCGCGAAG 62.504 60.000 8.23 12.58 42.97 3.79
303 304 2.590291 TTTGTCTGCAGCCGCGAA 60.590 55.556 8.23 5.16 42.97 4.70
304 305 3.043713 CTTTGTCTGCAGCCGCGA 61.044 61.111 8.23 0.00 42.97 5.87
305 306 3.349006 ACTTTGTCTGCAGCCGCG 61.349 61.111 9.47 0.00 42.97 6.46
306 307 2.253452 CACTTTGTCTGCAGCCGC 59.747 61.111 9.47 2.18 39.24 6.53
307 308 2.620112 CCCACTTTGTCTGCAGCCG 61.620 63.158 9.47 0.00 0.00 5.52
308 309 2.924105 GCCCACTTTGTCTGCAGCC 61.924 63.158 9.47 0.00 0.00 4.85
309 310 1.737355 TTGCCCACTTTGTCTGCAGC 61.737 55.000 9.47 4.92 32.88 5.25
310 311 0.313043 CTTGCCCACTTTGTCTGCAG 59.687 55.000 7.63 7.63 32.88 4.41
311 312 0.395586 ACTTGCCCACTTTGTCTGCA 60.396 50.000 0.00 0.00 0.00 4.41
312 313 0.031178 CACTTGCCCACTTTGTCTGC 59.969 55.000 0.00 0.00 0.00 4.26
313 314 0.670162 CCACTTGCCCACTTTGTCTG 59.330 55.000 0.00 0.00 0.00 3.51
314 315 1.109323 GCCACTTGCCCACTTTGTCT 61.109 55.000 0.00 0.00 0.00 3.41
315 316 1.363807 GCCACTTGCCCACTTTGTC 59.636 57.895 0.00 0.00 0.00 3.18
316 317 1.381056 TGCCACTTGCCCACTTTGT 60.381 52.632 0.00 0.00 40.16 2.83
317 318 1.067916 GTGCCACTTGCCCACTTTG 59.932 57.895 0.00 0.00 40.16 2.77
318 319 1.381056 TGTGCCACTTGCCCACTTT 60.381 52.632 0.00 0.00 40.16 2.66
319 320 1.829533 CTGTGCCACTTGCCCACTT 60.830 57.895 0.00 0.00 40.16 3.16
320 321 2.072874 ATCTGTGCCACTTGCCCACT 62.073 55.000 0.00 0.00 40.16 4.00
321 322 1.589716 GATCTGTGCCACTTGCCCAC 61.590 60.000 0.00 0.00 40.16 4.61
322 323 1.303561 GATCTGTGCCACTTGCCCA 60.304 57.895 0.00 0.00 40.16 5.36
323 324 1.001641 AGATCTGTGCCACTTGCCC 60.002 57.895 0.00 0.00 40.16 5.36
324 325 1.930908 GCAGATCTGTGCCACTTGCC 61.931 60.000 23.38 0.00 40.16 4.52
325 326 1.239296 TGCAGATCTGTGCCACTTGC 61.239 55.000 23.38 7.65 43.28 4.01
326 327 1.132453 CATGCAGATCTGTGCCACTTG 59.868 52.381 23.38 10.77 43.28 3.16
327 328 1.271762 ACATGCAGATCTGTGCCACTT 60.272 47.619 23.38 2.59 43.28 3.16
328 329 0.327259 ACATGCAGATCTGTGCCACT 59.673 50.000 23.38 0.64 43.28 4.00
329 330 0.450583 CACATGCAGATCTGTGCCAC 59.549 55.000 23.38 7.41 43.28 5.01
330 331 2.862738 CACATGCAGATCTGTGCCA 58.137 52.632 23.38 13.56 43.28 4.92
343 344 1.336517 CCCTTGACAAAGCAGCACATG 60.337 52.381 0.00 0.00 31.51 3.21
344 345 0.963962 CCCTTGACAAAGCAGCACAT 59.036 50.000 0.00 0.00 31.51 3.21
345 346 1.108727 CCCCTTGACAAAGCAGCACA 61.109 55.000 0.00 0.00 31.51 4.57
346 347 0.823356 TCCCCTTGACAAAGCAGCAC 60.823 55.000 0.00 0.00 31.51 4.40
347 348 0.112995 ATCCCCTTGACAAAGCAGCA 59.887 50.000 0.00 0.00 31.51 4.41
348 349 0.529378 CATCCCCTTGACAAAGCAGC 59.471 55.000 0.00 0.00 31.51 5.25
349 350 0.529378 GCATCCCCTTGACAAAGCAG 59.471 55.000 0.00 0.00 31.51 4.24
350 351 0.178967 TGCATCCCCTTGACAAAGCA 60.179 50.000 0.00 0.00 31.51 3.91
351 352 1.188863 ATGCATCCCCTTGACAAAGC 58.811 50.000 0.00 0.00 31.51 3.51
352 353 3.258872 TCAAATGCATCCCCTTGACAAAG 59.741 43.478 0.00 0.00 0.00 2.77
353 354 3.237746 TCAAATGCATCCCCTTGACAAA 58.762 40.909 0.00 0.00 0.00 2.83
354 355 2.886913 TCAAATGCATCCCCTTGACAA 58.113 42.857 0.00 0.00 0.00 3.18
355 356 2.601240 TCAAATGCATCCCCTTGACA 57.399 45.000 0.00 0.00 0.00 3.58
356 357 3.025978 TCATCAAATGCATCCCCTTGAC 58.974 45.455 12.53 0.00 31.00 3.18
357 358 3.025978 GTCATCAAATGCATCCCCTTGA 58.974 45.455 12.63 12.63 32.67 3.02
358 359 2.761767 TGTCATCAAATGCATCCCCTTG 59.238 45.455 0.00 0.40 0.00 3.61
359 360 2.762327 GTGTCATCAAATGCATCCCCTT 59.238 45.455 0.00 0.00 0.00 3.95
360 361 2.024655 AGTGTCATCAAATGCATCCCCT 60.025 45.455 0.00 0.00 0.00 4.79
361 362 2.100252 CAGTGTCATCAAATGCATCCCC 59.900 50.000 0.00 0.00 0.00 4.81
362 363 2.100252 CCAGTGTCATCAAATGCATCCC 59.900 50.000 0.00 0.00 0.00 3.85
363 364 3.018856 TCCAGTGTCATCAAATGCATCC 58.981 45.455 0.00 0.00 0.00 3.51
364 365 4.439700 CCTTCCAGTGTCATCAAATGCATC 60.440 45.833 0.00 0.00 0.00 3.91
365 366 3.446161 CCTTCCAGTGTCATCAAATGCAT 59.554 43.478 0.00 0.00 0.00 3.96
366 367 2.821378 CCTTCCAGTGTCATCAAATGCA 59.179 45.455 0.00 0.00 0.00 3.96
367 368 2.165030 CCCTTCCAGTGTCATCAAATGC 59.835 50.000 0.00 0.00 0.00 3.56
368 369 3.689347 TCCCTTCCAGTGTCATCAAATG 58.311 45.455 0.00 0.00 0.00 2.32
369 370 3.308688 CCTCCCTTCCAGTGTCATCAAAT 60.309 47.826 0.00 0.00 0.00 2.32
370 371 2.040278 CCTCCCTTCCAGTGTCATCAAA 59.960 50.000 0.00 0.00 0.00 2.69
371 372 1.630369 CCTCCCTTCCAGTGTCATCAA 59.370 52.381 0.00 0.00 0.00 2.57
372 373 1.279496 CCTCCCTTCCAGTGTCATCA 58.721 55.000 0.00 0.00 0.00 3.07
373 374 1.280457 ACCTCCCTTCCAGTGTCATC 58.720 55.000 0.00 0.00 0.00 2.92
374 375 2.642171 TACCTCCCTTCCAGTGTCAT 57.358 50.000 0.00 0.00 0.00 3.06
375 376 2.409064 TTACCTCCCTTCCAGTGTCA 57.591 50.000 0.00 0.00 0.00 3.58
376 377 3.559384 CCTTTTACCTCCCTTCCAGTGTC 60.559 52.174 0.00 0.00 0.00 3.67
377 378 2.375509 CCTTTTACCTCCCTTCCAGTGT 59.624 50.000 0.00 0.00 0.00 3.55
378 379 2.880167 GCCTTTTACCTCCCTTCCAGTG 60.880 54.545 0.00 0.00 0.00 3.66
379 380 1.354705 GCCTTTTACCTCCCTTCCAGT 59.645 52.381 0.00 0.00 0.00 4.00
380 381 1.354368 TGCCTTTTACCTCCCTTCCAG 59.646 52.381 0.00 0.00 0.00 3.86
381 382 1.451449 TGCCTTTTACCTCCCTTCCA 58.549 50.000 0.00 0.00 0.00 3.53
382 383 2.447443 CTTGCCTTTTACCTCCCTTCC 58.553 52.381 0.00 0.00 0.00 3.46
383 384 2.041216 TCCTTGCCTTTTACCTCCCTTC 59.959 50.000 0.00 0.00 0.00 3.46
384 385 2.041755 CTCCTTGCCTTTTACCTCCCTT 59.958 50.000 0.00 0.00 0.00 3.95
385 386 1.636003 CTCCTTGCCTTTTACCTCCCT 59.364 52.381 0.00 0.00 0.00 4.20
386 387 1.341089 CCTCCTTGCCTTTTACCTCCC 60.341 57.143 0.00 0.00 0.00 4.30
387 388 1.955683 GCCTCCTTGCCTTTTACCTCC 60.956 57.143 0.00 0.00 0.00 4.30
388 389 1.464734 GCCTCCTTGCCTTTTACCTC 58.535 55.000 0.00 0.00 0.00 3.85
389 390 3.672066 GCCTCCTTGCCTTTTACCT 57.328 52.632 0.00 0.00 0.00 3.08
408 409 1.153489 CTCCACGACAGCCAGGATG 60.153 63.158 2.11 2.11 0.00 3.51
409 410 3.023949 GCTCCACGACAGCCAGGAT 62.024 63.158 0.00 0.00 0.00 3.24
410 411 3.695606 GCTCCACGACAGCCAGGA 61.696 66.667 0.00 0.00 0.00 3.86
411 412 4.007644 TGCTCCACGACAGCCAGG 62.008 66.667 0.00 0.00 35.89 4.45
412 413 2.740055 GTGCTCCACGACAGCCAG 60.740 66.667 0.00 0.00 35.89 4.85
413 414 4.314440 GGTGCTCCACGACAGCCA 62.314 66.667 0.00 0.00 35.89 4.75
414 415 4.314440 TGGTGCTCCACGACAGCC 62.314 66.667 2.64 0.00 39.03 4.85
423 424 0.668706 CGGATCGATCATGGTGCTCC 60.669 60.000 25.93 6.79 0.00 4.70
424 425 0.668706 CCGGATCGATCATGGTGCTC 60.669 60.000 25.93 5.91 0.00 4.26
425 426 1.368950 CCGGATCGATCATGGTGCT 59.631 57.895 25.93 0.00 0.00 4.40
426 427 2.320587 GCCGGATCGATCATGGTGC 61.321 63.158 27.07 17.87 0.00 5.01
427 428 0.250038 AAGCCGGATCGATCATGGTG 60.250 55.000 27.07 13.40 0.00 4.17
428 429 0.469917 AAAGCCGGATCGATCATGGT 59.530 50.000 27.07 19.77 0.00 3.55
429 430 2.455674 TAAAGCCGGATCGATCATGG 57.544 50.000 25.93 24.99 0.00 3.66
430 431 3.185188 CAGTTAAAGCCGGATCGATCATG 59.815 47.826 25.93 17.14 0.00 3.07
431 432 3.069586 TCAGTTAAAGCCGGATCGATCAT 59.930 43.478 25.93 6.78 0.00 2.45
432 433 2.429250 TCAGTTAAAGCCGGATCGATCA 59.571 45.455 25.93 1.35 0.00 2.92
433 434 3.093717 TCAGTTAAAGCCGGATCGATC 57.906 47.619 17.36 17.36 0.00 3.69
434 435 3.393800 CATCAGTTAAAGCCGGATCGAT 58.606 45.455 5.05 0.00 0.00 3.59
435 436 2.821546 CATCAGTTAAAGCCGGATCGA 58.178 47.619 5.05 0.00 0.00 3.59
436 437 1.261619 GCATCAGTTAAAGCCGGATCG 59.738 52.381 5.05 0.00 0.00 3.69
437 438 1.261619 CGCATCAGTTAAAGCCGGATC 59.738 52.381 5.05 0.00 0.00 3.36
438 439 1.299541 CGCATCAGTTAAAGCCGGAT 58.700 50.000 5.05 0.00 0.00 4.18
439 440 0.036765 ACGCATCAGTTAAAGCCGGA 60.037 50.000 5.05 0.00 0.00 5.14
440 441 1.647346 TACGCATCAGTTAAAGCCGG 58.353 50.000 0.00 0.00 0.00 6.13
441 442 2.927477 TCTTACGCATCAGTTAAAGCCG 59.073 45.455 0.00 0.00 0.00 5.52
442 443 4.392138 ACTTCTTACGCATCAGTTAAAGCC 59.608 41.667 0.00 0.00 0.00 4.35
443 444 5.532025 ACTTCTTACGCATCAGTTAAAGC 57.468 39.130 0.00 0.00 0.00 3.51
444 445 5.571741 TCGACTTCTTACGCATCAGTTAAAG 59.428 40.000 0.00 0.00 0.00 1.85
445 446 5.463286 TCGACTTCTTACGCATCAGTTAAA 58.537 37.500 0.00 0.00 0.00 1.52
446 447 5.050644 TCGACTTCTTACGCATCAGTTAA 57.949 39.130 0.00 0.00 0.00 2.01
447 448 4.659088 CTCGACTTCTTACGCATCAGTTA 58.341 43.478 0.00 0.00 0.00 2.24
448 449 3.502920 CTCGACTTCTTACGCATCAGTT 58.497 45.455 0.00 0.00 0.00 3.16
449 450 2.732597 GCTCGACTTCTTACGCATCAGT 60.733 50.000 0.00 0.00 0.00 3.41
450 451 1.849219 GCTCGACTTCTTACGCATCAG 59.151 52.381 0.00 0.00 0.00 2.90
451 452 1.794076 CGCTCGACTTCTTACGCATCA 60.794 52.381 0.00 0.00 0.00 3.07
452 453 0.840729 CGCTCGACTTCTTACGCATC 59.159 55.000 0.00 0.00 0.00 3.91
453 454 0.450583 TCGCTCGACTTCTTACGCAT 59.549 50.000 0.00 0.00 0.00 4.73
454 455 0.179197 CTCGCTCGACTTCTTACGCA 60.179 55.000 0.00 0.00 0.00 5.24
455 456 0.096628 TCTCGCTCGACTTCTTACGC 59.903 55.000 0.00 0.00 0.00 4.42
456 457 1.800399 GTCTCGCTCGACTTCTTACG 58.200 55.000 0.00 0.00 0.00 3.18
457 458 1.800399 CGTCTCGCTCGACTTCTTAC 58.200 55.000 1.61 0.00 0.00 2.34
470 471 2.434359 GACCCCAAAGGCGTCTCG 60.434 66.667 0.00 0.00 40.58 4.04
471 472 0.322546 ATTGACCCCAAAGGCGTCTC 60.323 55.000 0.00 0.00 40.58 3.36
472 473 0.112412 AATTGACCCCAAAGGCGTCT 59.888 50.000 2.88 0.00 40.58 4.18
473 474 0.243636 CAATTGACCCCAAAGGCGTC 59.756 55.000 0.00 0.00 40.58 5.19
474 475 1.184970 CCAATTGACCCCAAAGGCGT 61.185 55.000 7.12 0.00 40.58 5.68
475 476 0.897863 TCCAATTGACCCCAAAGGCG 60.898 55.000 7.12 0.00 40.58 5.52
476 477 0.897621 CTCCAATTGACCCCAAAGGC 59.102 55.000 7.12 0.00 40.58 4.35
477 478 1.560505 CCTCCAATTGACCCCAAAGG 58.439 55.000 7.12 0.00 43.78 3.11
478 479 0.897621 GCCTCCAATTGACCCCAAAG 59.102 55.000 7.12 0.00 35.67 2.77
479 480 0.486879 AGCCTCCAATTGACCCCAAA 59.513 50.000 7.12 0.00 35.67 3.28
480 481 0.486879 AAGCCTCCAATTGACCCCAA 59.513 50.000 7.12 0.00 36.61 4.12
481 482 0.039618 GAAGCCTCCAATTGACCCCA 59.960 55.000 7.12 0.00 0.00 4.96
482 483 0.684479 GGAAGCCTCCAATTGACCCC 60.684 60.000 7.12 0.00 41.96 4.95
483 484 0.684479 GGGAAGCCTCCAATTGACCC 60.684 60.000 7.12 4.44 44.51 4.46
484 485 0.684479 GGGGAAGCCTCCAATTGACC 60.684 60.000 7.12 0.00 44.51 4.02
485 486 0.332972 AGGGGAAGCCTCCAATTGAC 59.667 55.000 7.12 0.00 44.51 3.18
486 487 0.625849 GAGGGGAAGCCTCCAATTGA 59.374 55.000 7.12 0.00 44.51 2.57
487 488 3.197664 GAGGGGAAGCCTCCAATTG 57.802 57.895 3.19 0.00 44.51 2.32
493 494 3.839432 CGACGGAGGGGAAGCCTC 61.839 72.222 0.00 0.00 0.00 4.70
496 497 4.821589 CTGCGACGGAGGGGAAGC 62.822 72.222 8.71 0.00 0.00 3.86
497 498 4.821589 GCTGCGACGGAGGGGAAG 62.822 72.222 18.44 0.00 0.00 3.46
521 522 1.294780 CATCAGGCCTATCTCCGCC 59.705 63.158 3.98 0.00 46.09 6.13
522 523 1.375268 GCATCAGGCCTATCTCCGC 60.375 63.158 3.98 0.00 36.11 5.54
534 535 2.976692 TACTGCGGCGATGGCATCAG 62.977 60.000 25.88 17.81 42.25 2.90
535 536 2.585791 TTACTGCGGCGATGGCATCA 62.586 55.000 25.88 6.95 42.47 3.07
536 537 1.230635 ATTACTGCGGCGATGGCATC 61.231 55.000 17.58 17.58 42.47 3.91
537 538 0.034756 TATTACTGCGGCGATGGCAT 59.965 50.000 12.98 0.00 42.47 4.40
538 539 0.034756 ATATTACTGCGGCGATGGCA 59.965 50.000 12.98 0.00 42.47 4.92
539 540 1.135972 CAATATTACTGCGGCGATGGC 60.136 52.381 12.98 0.00 38.90 4.40
540 541 1.464608 CCAATATTACTGCGGCGATGG 59.535 52.381 12.98 1.25 0.00 3.51
541 542 1.135972 GCCAATATTACTGCGGCGATG 60.136 52.381 12.98 4.24 32.14 3.84
542 543 1.156736 GCCAATATTACTGCGGCGAT 58.843 50.000 12.98 0.00 32.14 4.58
543 544 2.612200 GCCAATATTACTGCGGCGA 58.388 52.632 12.98 0.00 32.14 5.54
545 546 0.234884 GTCGCCAATATTACTGCGGC 59.765 55.000 19.63 16.43 46.51 6.53
546 547 0.865769 GGTCGCCAATATTACTGCGG 59.134 55.000 19.63 5.62 46.51 5.69
548 549 1.792949 CTCGGTCGCCAATATTACTGC 59.207 52.381 0.00 0.00 0.00 4.40
549 550 3.093717 ACTCGGTCGCCAATATTACTG 57.906 47.619 0.00 0.00 0.00 2.74
550 551 4.280174 ACATACTCGGTCGCCAATATTACT 59.720 41.667 0.00 0.00 0.00 2.24
551 552 4.384846 CACATACTCGGTCGCCAATATTAC 59.615 45.833 0.00 0.00 0.00 1.89
552 553 4.038282 ACACATACTCGGTCGCCAATATTA 59.962 41.667 0.00 0.00 0.00 0.98
553 554 3.181469 ACACATACTCGGTCGCCAATATT 60.181 43.478 0.00 0.00 0.00 1.28
554 555 2.364324 ACACATACTCGGTCGCCAATAT 59.636 45.455 0.00 0.00 0.00 1.28
555 556 1.752498 ACACATACTCGGTCGCCAATA 59.248 47.619 0.00 0.00 0.00 1.90
556 557 0.535335 ACACATACTCGGTCGCCAAT 59.465 50.000 0.00 0.00 0.00 3.16
557 558 0.389296 CACACATACTCGGTCGCCAA 60.389 55.000 0.00 0.00 0.00 4.52
558 559 1.214325 CACACATACTCGGTCGCCA 59.786 57.895 0.00 0.00 0.00 5.69
559 560 1.518572 CCACACATACTCGGTCGCC 60.519 63.158 0.00 0.00 0.00 5.54
560 561 2.165301 GCCACACATACTCGGTCGC 61.165 63.158 0.00 0.00 0.00 5.19
561 562 1.518572 GGCCACACATACTCGGTCG 60.519 63.158 0.00 0.00 0.00 4.79
562 563 1.153429 GGGCCACACATACTCGGTC 60.153 63.158 4.39 0.00 0.00 4.79
563 564 2.987125 GGGCCACACATACTCGGT 59.013 61.111 4.39 0.00 0.00 4.69
564 565 2.202878 CGGGCCACACATACTCGG 60.203 66.667 4.39 0.00 0.00 4.63
565 566 1.079405 AACGGGCCACACATACTCG 60.079 57.895 4.39 0.00 0.00 4.18
566 567 0.036765 TCAACGGGCCACACATACTC 60.037 55.000 4.39 0.00 0.00 2.59
567 568 0.036388 CTCAACGGGCCACACATACT 60.036 55.000 4.39 0.00 0.00 2.12
568 569 1.024579 CCTCAACGGGCCACACATAC 61.025 60.000 4.39 0.00 0.00 2.39
569 570 1.298340 CCTCAACGGGCCACACATA 59.702 57.895 4.39 0.00 0.00 2.29
570 571 2.034066 CCTCAACGGGCCACACAT 59.966 61.111 4.39 0.00 0.00 3.21
571 572 3.484806 ACCTCAACGGGCCACACA 61.485 61.111 4.39 0.00 36.97 3.72
572 573 2.978010 CACCTCAACGGGCCACAC 60.978 66.667 4.39 0.00 36.97 3.82
573 574 4.263572 CCACCTCAACGGGCCACA 62.264 66.667 4.39 0.00 36.97 4.17
574 575 3.901797 CTCCACCTCAACGGGCCAC 62.902 68.421 4.39 0.00 36.97 5.01
575 576 3.636231 CTCCACCTCAACGGGCCA 61.636 66.667 4.39 0.00 36.97 5.36
576 577 4.410400 CCTCCACCTCAACGGGCC 62.410 72.222 0.00 0.00 36.97 5.80
577 578 2.804828 CTTCCTCCACCTCAACGGGC 62.805 65.000 0.00 0.00 36.97 6.13
578 579 1.296715 CTTCCTCCACCTCAACGGG 59.703 63.158 0.00 0.00 36.97 5.28
579 580 1.376037 GCTTCCTCCACCTCAACGG 60.376 63.158 0.00 0.00 39.35 4.44
580 581 1.376037 GGCTTCCTCCACCTCAACG 60.376 63.158 0.00 0.00 0.00 4.10
581 582 1.376037 CGGCTTCCTCCACCTCAAC 60.376 63.158 0.00 0.00 0.00 3.18
582 583 1.827399 GACGGCTTCCTCCACCTCAA 61.827 60.000 0.00 0.00 0.00 3.02
583 584 2.203788 ACGGCTTCCTCCACCTCA 60.204 61.111 0.00 0.00 0.00 3.86
584 585 2.579738 GACGGCTTCCTCCACCTC 59.420 66.667 0.00 0.00 0.00 3.85
585 586 3.382832 CGACGGCTTCCTCCACCT 61.383 66.667 0.00 0.00 0.00 4.00
605 606 3.576356 CATGGCGCCGTGTGATCC 61.576 66.667 35.66 3.90 0.00 3.36
606 607 3.576356 CCATGGCGCCGTGTGATC 61.576 66.667 39.05 8.48 0.00 2.92
617 618 4.066139 ACCCAAGGAGGCCATGGC 62.066 66.667 29.47 29.47 40.67 4.40
618 619 2.043652 CACCCAAGGAGGCCATGG 60.044 66.667 7.63 7.63 41.56 3.66
619 620 1.679977 CACACCCAAGGAGGCCATG 60.680 63.158 5.01 0.00 35.39 3.66
620 621 1.852157 TCACACCCAAGGAGGCCAT 60.852 57.895 5.01 0.00 35.39 4.40
621 622 2.449518 TCACACCCAAGGAGGCCA 60.450 61.111 5.01 0.00 35.39 5.36
622 623 1.198759 TAGTCACACCCAAGGAGGCC 61.199 60.000 0.00 0.00 35.39 5.19
623 624 0.250513 CTAGTCACACCCAAGGAGGC 59.749 60.000 0.00 0.00 35.39 4.70
624 625 0.250513 GCTAGTCACACCCAAGGAGG 59.749 60.000 0.00 0.00 37.03 4.30
625 626 1.270907 AGCTAGTCACACCCAAGGAG 58.729 55.000 0.00 0.00 0.00 3.69
626 627 2.457598 CTAGCTAGTCACACCCAAGGA 58.542 52.381 12.92 0.00 0.00 3.36
627 628 1.134670 GCTAGCTAGTCACACCCAAGG 60.135 57.143 21.62 0.00 0.00 3.61
628 629 1.827969 AGCTAGCTAGTCACACCCAAG 59.172 52.381 17.69 0.00 0.00 3.61
629 630 1.938585 AGCTAGCTAGTCACACCCAA 58.061 50.000 17.69 0.00 0.00 4.12
630 631 1.550524 CAAGCTAGCTAGTCACACCCA 59.449 52.381 19.70 0.00 0.00 4.51
631 632 1.550976 ACAAGCTAGCTAGTCACACCC 59.449 52.381 19.70 3.54 0.00 4.61
632 633 3.320673 AACAAGCTAGCTAGTCACACC 57.679 47.619 19.70 4.26 0.00 4.16
633 634 4.058817 ACAAACAAGCTAGCTAGTCACAC 58.941 43.478 19.70 4.98 0.00 3.82
634 635 4.336889 ACAAACAAGCTAGCTAGTCACA 57.663 40.909 19.70 0.00 0.00 3.58
635 636 5.007724 ACAAACAAACAAGCTAGCTAGTCAC 59.992 40.000 19.70 5.72 0.00 3.67
636 637 5.007626 CACAAACAAACAAGCTAGCTAGTCA 59.992 40.000 19.70 0.00 0.00 3.41
637 638 5.444122 CACAAACAAACAAGCTAGCTAGTC 58.556 41.667 19.70 13.74 0.00 2.59
638 639 4.261197 GCACAAACAAACAAGCTAGCTAGT 60.261 41.667 19.70 9.10 0.00 2.57
639 640 4.222114 GCACAAACAAACAAGCTAGCTAG 58.778 43.478 19.70 16.84 0.00 3.42
640 641 3.629855 TGCACAAACAAACAAGCTAGCTA 59.370 39.130 19.70 0.00 0.00 3.32
641 642 2.426738 TGCACAAACAAACAAGCTAGCT 59.573 40.909 12.68 12.68 0.00 3.32
642 643 2.791004 CTGCACAAACAAACAAGCTAGC 59.209 45.455 6.62 6.62 0.00 3.42
643 644 3.792956 CACTGCACAAACAAACAAGCTAG 59.207 43.478 0.00 0.00 0.00 3.42
644 645 3.768406 CACTGCACAAACAAACAAGCTA 58.232 40.909 0.00 0.00 0.00 3.32
645 646 2.609350 CACTGCACAAACAAACAAGCT 58.391 42.857 0.00 0.00 0.00 3.74
646 647 1.060986 GCACTGCACAAACAAACAAGC 59.939 47.619 0.00 0.00 0.00 4.01
647 648 1.321148 CGCACTGCACAAACAAACAAG 59.679 47.619 1.11 0.00 0.00 3.16
648 649 1.336332 ACGCACTGCACAAACAAACAA 60.336 42.857 1.11 0.00 0.00 2.83
649 650 0.242286 ACGCACTGCACAAACAAACA 59.758 45.000 1.11 0.00 0.00 2.83
650 651 2.108700 CTACGCACTGCACAAACAAAC 58.891 47.619 1.11 0.00 0.00 2.93
651 652 1.532921 GCTACGCACTGCACAAACAAA 60.533 47.619 1.11 0.00 0.00 2.83
652 653 0.028770 GCTACGCACTGCACAAACAA 59.971 50.000 1.11 0.00 0.00 2.83
653 654 1.646540 GCTACGCACTGCACAAACA 59.353 52.632 1.11 0.00 0.00 2.83
654 655 1.082104 GGCTACGCACTGCACAAAC 60.082 57.895 1.11 0.00 0.00 2.93
655 656 0.817634 AAGGCTACGCACTGCACAAA 60.818 50.000 1.11 0.00 0.00 2.83
656 657 0.034198 TAAGGCTACGCACTGCACAA 59.966 50.000 1.11 0.00 0.00 3.33
657 658 0.034198 TTAAGGCTACGCACTGCACA 59.966 50.000 1.11 0.00 0.00 4.57
658 659 1.369625 ATTAAGGCTACGCACTGCAC 58.630 50.000 1.11 0.00 0.00 4.57
659 660 2.107950 AATTAAGGCTACGCACTGCA 57.892 45.000 1.11 0.00 0.00 4.41
660 661 4.272504 TCATTAATTAAGGCTACGCACTGC 59.727 41.667 4.99 0.00 0.00 4.40
661 662 5.984233 TCATTAATTAAGGCTACGCACTG 57.016 39.130 4.99 0.00 0.00 3.66
662 663 6.258068 GTCTTCATTAATTAAGGCTACGCACT 59.742 38.462 6.72 0.00 0.00 4.40
663 664 6.419771 GTCTTCATTAATTAAGGCTACGCAC 58.580 40.000 6.72 0.00 0.00 5.34
664 665 5.233476 CGTCTTCATTAATTAAGGCTACGCA 59.767 40.000 11.21 0.00 0.00 5.24
665 666 5.461078 TCGTCTTCATTAATTAAGGCTACGC 59.539 40.000 18.22 4.86 0.00 4.42
666 667 7.595502 AGATCGTCTTCATTAATTAAGGCTACG 59.404 37.037 17.51 17.51 0.00 3.51
667 668 8.819643 AGATCGTCTTCATTAATTAAGGCTAC 57.180 34.615 11.21 2.87 0.00 3.58
668 669 9.261180 CAAGATCGTCTTCATTAATTAAGGCTA 57.739 33.333 11.21 2.31 33.78 3.93
669 670 7.770897 ACAAGATCGTCTTCATTAATTAAGGCT 59.229 33.333 11.21 0.00 33.78 4.58
670 671 7.920738 ACAAGATCGTCTTCATTAATTAAGGC 58.079 34.615 9.05 6.71 33.78 4.35
675 676 9.965824 AAACAAACAAGATCGTCTTCATTAATT 57.034 25.926 0.00 0.00 33.78 1.40
679 680 8.783093 TGATAAACAAACAAGATCGTCTTCATT 58.217 29.630 0.00 0.00 33.78 2.57
680 681 8.322906 TGATAAACAAACAAGATCGTCTTCAT 57.677 30.769 0.00 0.00 33.78 2.57
681 682 7.722795 TGATAAACAAACAAGATCGTCTTCA 57.277 32.000 0.00 0.00 33.78 3.02
682 683 9.055248 CATTGATAAACAAACAAGATCGTCTTC 57.945 33.333 0.00 0.00 42.03 2.87
683 684 7.538678 GCATTGATAAACAAACAAGATCGTCTT 59.461 33.333 0.00 0.00 42.03 3.01
684 685 7.023575 GCATTGATAAACAAACAAGATCGTCT 58.976 34.615 0.00 0.00 42.03 4.18
685 686 6.801377 TGCATTGATAAACAAACAAGATCGTC 59.199 34.615 0.00 0.00 42.03 4.20
686 687 6.676950 TGCATTGATAAACAAACAAGATCGT 58.323 32.000 0.00 0.00 42.03 3.73
687 688 6.237384 GCTGCATTGATAAACAAACAAGATCG 60.237 38.462 0.00 0.00 42.03 3.69
688 689 6.237384 CGCTGCATTGATAAACAAACAAGATC 60.237 38.462 0.00 0.00 42.03 2.75
689 690 5.574055 CGCTGCATTGATAAACAAACAAGAT 59.426 36.000 0.00 0.00 42.03 2.40
690 691 4.916831 CGCTGCATTGATAAACAAACAAGA 59.083 37.500 0.00 0.00 42.03 3.02
691 692 4.916831 TCGCTGCATTGATAAACAAACAAG 59.083 37.500 0.00 0.00 42.03 3.16
692 693 4.864633 TCGCTGCATTGATAAACAAACAA 58.135 34.783 0.00 0.00 42.03 2.83
693 694 4.215185 TCTCGCTGCATTGATAAACAAACA 59.785 37.500 0.00 0.00 42.03 2.83
694 695 4.554973 GTCTCGCTGCATTGATAAACAAAC 59.445 41.667 0.00 0.00 42.03 2.93
695 696 4.455533 AGTCTCGCTGCATTGATAAACAAA 59.544 37.500 0.00 0.00 42.03 2.83
696 697 4.002982 AGTCTCGCTGCATTGATAAACAA 58.997 39.130 0.00 0.00 42.95 2.83
794 796 4.503714 TCCCTATTCAGCCTTTTACTGG 57.496 45.455 0.00 0.00 35.78 4.00
795 797 9.442047 CTTATATCCCTATTCAGCCTTTTACTG 57.558 37.037 0.00 0.00 36.44 2.74
945 950 2.363147 AGACGGGAGCCTGGAGAC 60.363 66.667 0.00 0.00 0.00 3.36
946 951 2.043852 GAGACGGGAGCCTGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
947 952 3.151022 GGAGACGGGAGCCTGGAG 61.151 72.222 0.00 0.00 0.00 3.86
948 953 3.965026 CTGGAGACGGGAGCCTGGA 62.965 68.421 0.00 0.00 0.00 3.86
949 954 3.465403 CTGGAGACGGGAGCCTGG 61.465 72.222 0.00 0.00 0.00 4.45
985 990 4.249661 GGAACCATCTGAAGTCTTGAGAC 58.750 47.826 3.68 2.93 45.08 3.36
986 991 4.543590 GGAACCATCTGAAGTCTTGAGA 57.456 45.455 4.11 4.11 0.00 3.27
1191 1202 6.376581 AGCTTAGGTGAAATTCTCAAAGATGG 59.623 38.462 11.16 0.00 35.22 3.51
1195 1206 5.182760 AGCAGCTTAGGTGAAATTCTCAAAG 59.817 40.000 16.12 0.66 35.22 2.77
1248 1271 1.062294 CGTAGTCTCTGTCCGTACTGC 59.938 57.143 0.00 0.00 0.00 4.40
1255 1278 2.772691 CCCGCCGTAGTCTCTGTCC 61.773 68.421 0.00 0.00 0.00 4.02
1602 1625 3.118775 TGTTGACCGGTGATAGGATTGAG 60.119 47.826 14.63 0.00 0.00 3.02
1730 1753 3.680642 ATGATCGATGGCGTGAAAAAG 57.319 42.857 0.54 0.00 38.98 2.27
1733 1756 1.063912 GCAATGATCGATGGCGTGAAA 59.936 47.619 0.54 0.00 38.98 2.69
1772 1795 0.674895 ACGCCTTGATCTGGAGTTGC 60.675 55.000 9.08 0.00 33.95 4.17
1873 1899 3.778629 GGTCCACTTTTCATCCCCTAGTA 59.221 47.826 0.00 0.00 0.00 1.82
1874 1900 2.576648 GGTCCACTTTTCATCCCCTAGT 59.423 50.000 0.00 0.00 0.00 2.57
1875 1901 2.846827 AGGTCCACTTTTCATCCCCTAG 59.153 50.000 0.00 0.00 0.00 3.02
1886 1912 1.109323 GTGGCAGCAAGGTCCACTTT 61.109 55.000 0.00 0.00 45.04 2.66
2033 2059 3.117701 TGGCATCGGGATAAAAATCCTCA 60.118 43.478 4.50 0.00 40.54 3.86
2114 2140 1.270199 CCATCTTCAGCAGGATCCTCG 60.270 57.143 12.69 9.05 0.00 4.63
2182 2208 2.937149 CTCTCTGTGCCATCATCAACTG 59.063 50.000 0.00 0.00 0.00 3.16
2255 2281 2.550855 GGCACTCAGACAAAGTGGATCA 60.551 50.000 5.51 0.00 43.50 2.92
2297 2323 5.880332 GTCAGTAAAGTAGGCATGATTTCCA 59.120 40.000 0.00 0.00 0.00 3.53
2373 2399 1.069049 GCGATTATTGCCCAAGCCAAT 59.931 47.619 0.00 0.00 38.69 3.16
2547 3222 1.751924 CTCCAGGAGTGTAGTGCCTAC 59.248 57.143 8.54 5.65 37.46 3.18
2551 3226 1.135333 GTAGCTCCAGGAGTGTAGTGC 59.865 57.143 18.37 2.25 31.39 4.40
2563 4609 1.007118 TGATGTCCTCTGGTAGCTCCA 59.993 52.381 0.00 0.00 45.01 3.86
2583 4629 1.089920 GAGGCAAAGACACGCATCAT 58.910 50.000 0.00 0.00 38.73 2.45
2601 5946 0.719015 AGGTCAGGGATCTCAAGGGA 59.281 55.000 0.00 0.00 0.00 4.20
2666 6011 2.123409 GCCAAGTTTGTGAAGGGCA 58.877 52.632 0.00 0.00 41.02 5.36
2672 6017 1.539157 TGTGTGTGCCAAGTTTGTGA 58.461 45.000 0.00 0.00 0.00 3.58
2674 6019 1.404047 GCTTGTGTGTGCCAAGTTTGT 60.404 47.619 0.00 0.00 41.08 2.83
2750 6095 0.171455 CCACGAGGCTGTAGAGACAC 59.829 60.000 0.00 0.00 0.00 3.67
2787 6132 2.718073 GCGGCTCCGGGAGAGTTAA 61.718 63.158 27.95 0.00 45.21 2.01
2892 6237 3.141398 GAGCAATCTGTTGACCAGTGAA 58.859 45.455 0.00 0.00 42.19 3.18
2990 6335 2.406452 CTTGGTTTGCCGTGTGCCTC 62.406 60.000 0.00 0.00 40.16 4.70
3062 6407 7.765695 ATCATAAAACAAAAGAGCCTTCTGA 57.234 32.000 0.00 0.00 32.79 3.27
3192 6537 6.719370 TCCTTGTAGGTGCAGTCAAAATAATT 59.281 34.615 0.00 0.00 36.53 1.40
3236 6581 5.355350 GGTGTGAATTTCTCCCATTAGAGTG 59.645 44.000 0.00 0.00 35.28 3.51
3274 6619 7.886629 ATAATGTTCATTGTAACATCAGGCT 57.113 32.000 8.11 0.00 46.72 4.58
3299 6644 6.419484 AAATCGTCATCATCCACACCTATA 57.581 37.500 0.00 0.00 0.00 1.31
3302 6647 3.634397 AAATCGTCATCATCCACACCT 57.366 42.857 0.00 0.00 0.00 4.00
3590 6938 9.333724 TCAGTTATGTACTCATTATCGTCAGTA 57.666 33.333 0.00 0.00 33.85 2.74
3817 7251 2.273449 CAATCGGCCCTCCAGCTT 59.727 61.111 0.00 0.00 0.00 3.74
3987 7447 3.033909 TCCAGAGTCCCACACATGATAG 58.966 50.000 0.00 0.00 0.00 2.08
4063 7543 6.256819 TCTTATTTCTCTGACTTCTCCCAGA 58.743 40.000 0.00 0.00 37.77 3.86
4112 7614 5.742453 GCTTGCAAATGTTCTAGTGATCATG 59.258 40.000 0.00 0.00 34.09 3.07
4147 7649 2.481104 CCAAACAACAACATCGCAGGTT 60.481 45.455 0.00 0.00 0.00 3.50
4151 7653 1.268999 GCTCCAAACAACAACATCGCA 60.269 47.619 0.00 0.00 0.00 5.10
4155 7657 3.890756 TCATCAGCTCCAAACAACAACAT 59.109 39.130 0.00 0.00 0.00 2.71
4197 7699 5.511386 AGGAGAAGAATTGGAACACATCT 57.489 39.130 0.00 0.00 39.29 2.90
4210 7715 4.843728 ACAACACTGACAAAGGAGAAGAA 58.156 39.130 0.00 0.00 0.00 2.52
4216 7721 4.946772 TGAATGAACAACACTGACAAAGGA 59.053 37.500 0.00 0.00 0.00 3.36
4224 7729 8.131100 AGTTAACTGAATGAATGAACAACACTG 58.869 33.333 7.48 0.00 0.00 3.66
4259 7767 3.310227 GCAAGCAATCACAGAGATCAGAG 59.690 47.826 0.00 0.00 35.39 3.35
4286 7796 3.603532 TCTTGGCTTCTGTCTTGCATAG 58.396 45.455 0.00 0.00 0.00 2.23
4502 9792 6.099557 CAGGCCAAAGAATAATAAAATCCCCA 59.900 38.462 5.01 0.00 0.00 4.96
4503 9793 6.326323 TCAGGCCAAAGAATAATAAAATCCCC 59.674 38.462 5.01 0.00 0.00 4.81
4546 9837 6.761714 CAGAACGAACCTATAAGTAATGCCTT 59.238 38.462 0.00 0.00 0.00 4.35
4552 9843 6.839124 TGTCCAGAACGAACCTATAAGTAA 57.161 37.500 0.00 0.00 0.00 2.24
4557 9848 5.670792 ACAATGTCCAGAACGAACCTATA 57.329 39.130 0.00 0.00 0.00 1.31
4560 9851 2.930826 ACAATGTCCAGAACGAACCT 57.069 45.000 0.00 0.00 0.00 3.50
4562 9853 4.915704 TCAAAACAATGTCCAGAACGAAC 58.084 39.130 0.00 0.00 0.00 3.95
4577 9868 8.049117 AGATCTTCTACCTGCATTATCAAAACA 58.951 33.333 0.00 0.00 0.00 2.83
4602 9893 1.781025 TTGGCGTTCTTTGCACGGAG 61.781 55.000 0.00 0.00 38.13 4.63
4616 9907 1.600636 TCTTGTTCCCAGCTTGGCG 60.601 57.895 0.00 0.00 35.79 5.69
4618 9909 0.250295 TCGTCTTGTTCCCAGCTTGG 60.250 55.000 0.00 0.00 37.25 3.61
4626 9917 0.666577 CCTGGTCGTCGTCTTGTTCC 60.667 60.000 0.00 0.00 0.00 3.62
4680 9971 4.231718 GTCACAGACGAAGAGAAAGACT 57.768 45.455 0.00 0.00 0.00 3.24
4695 9986 3.783377 CACGACAATTTGTACGTCACAG 58.217 45.455 17.89 8.51 38.72 3.66
4701 9992 3.059868 ACAAGAGCACGACAATTTGTACG 60.060 43.478 1.15 10.23 0.00 3.67
4710 10001 2.135139 CAAGCTAACAAGAGCACGACA 58.865 47.619 0.00 0.00 45.43 4.35
4728 10019 0.038166 GGTGATCCTGCTTCCACCAA 59.962 55.000 0.00 0.00 46.13 3.67
4745 10036 2.158608 CCAACAGAAAGGTCCTCTTGGT 60.159 50.000 0.00 0.00 35.55 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.