Multiple sequence alignment - TraesCS1B01G400300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G400300 chr1B 100.000 4320 0 0 598 4917 630835028 630830709 0.000000e+00 7978.0
1 TraesCS1B01G400300 chr1B 100.000 221 0 0 1 221 630835625 630835405 4.580000e-110 409.0
2 TraesCS1B01G400300 chr1B 77.459 244 39 14 4581 4817 555623468 555623702 1.110000e-26 132.0
3 TraesCS1B01G400300 chr1B 74.295 319 40 25 4596 4892 600525886 600525588 4.050000e-16 97.1
4 TraesCS1B01G400300 chr1D 92.596 3039 131 39 1558 4550 458889866 458886876 0.000000e+00 4279.0
5 TraesCS1B01G400300 chr1D 94.830 793 35 3 616 1402 458890681 458889889 0.000000e+00 1232.0
6 TraesCS1B01G400300 chr1D 92.308 234 4 3 1 221 458891139 458890907 2.210000e-83 320.0
7 TraesCS1B01G400300 chr1A 93.594 2732 111 30 1764 4476 551322621 551319935 0.000000e+00 4017.0
8 TraesCS1B01G400300 chr1A 94.045 806 36 8 598 1402 551323719 551322925 0.000000e+00 1212.0
9 TraesCS1B01G400300 chr1A 87.586 145 4 3 1 132 551324196 551324053 6.590000e-34 156.0
10 TraesCS1B01G400300 chr2D 85.316 824 87 17 605 1402 500267640 500268455 0.000000e+00 821.0
11 TraesCS1B01G400300 chr2D 89.892 277 21 5 1597 1872 16556899 16556629 2.820000e-92 350.0
12 TraesCS1B01G400300 chr2D 88.235 221 17 6 1184 1402 648847580 648847793 6.320000e-64 255.0
13 TraesCS1B01G400300 chr3B 82.704 636 98 11 2895 3524 477885878 477885249 5.560000e-154 555.0
14 TraesCS1B01G400300 chr3B 90.614 277 18 6 1597 1872 787977719 787977450 1.300000e-95 361.0
15 TraesCS1B01G400300 chr3B 90.110 273 22 3 1597 1869 183642809 183643076 2.820000e-92 350.0
16 TraesCS1B01G400300 chr3B 88.038 209 20 4 1195 1402 183642557 183642761 4.920000e-60 243.0
17 TraesCS1B01G400300 chr3B 78.761 226 28 17 4602 4817 108895378 108895593 3.090000e-27 134.0
18 TraesCS1B01G400300 chr3D 82.830 629 92 12 2895 3515 366454356 366453736 2.590000e-152 549.0
19 TraesCS1B01G400300 chr3A 82.520 635 99 11 2895 3523 488722588 488721960 9.310000e-152 547.0
20 TraesCS1B01G400300 chr3A 100.000 169 0 0 1396 1564 353638874 353638706 3.700000e-81 313.0
21 TraesCS1B01G400300 chr6B 88.487 304 30 4 1100 1402 714479 714778 3.620000e-96 363.0
22 TraesCS1B01G400300 chr6B 90.421 261 19 4 1613 1872 714814 715069 6.100000e-89 339.0
23 TraesCS1B01G400300 chr6B 96.757 185 3 3 1382 1564 460504465 460504648 6.180000e-79 305.0
24 TraesCS1B01G400300 chr6B 88.235 221 20 5 1184 1402 711530149 711529933 4.880000e-65 259.0
25 TraesCS1B01G400300 chr5B 90.614 277 19 5 1597 1872 462479031 462478761 1.300000e-95 361.0
26 TraesCS1B01G400300 chr5B 90.253 277 20 5 1597 1872 533555922 533556192 6.050000e-94 355.0
27 TraesCS1B01G400300 chr2B 90.614 277 19 5 1597 1872 73468684 73468954 1.300000e-95 361.0
28 TraesCS1B01G400300 chr2B 94.872 39 0 2 4781 4817 122054356 122054318 5.320000e-05 60.2
29 TraesCS1B01G400300 chr7B 100.000 171 0 0 1394 1564 380068870 380069040 2.860000e-82 316.0
30 TraesCS1B01G400300 chr7B 78.414 227 30 11 4683 4892 144512283 144512059 3.990000e-26 130.0
31 TraesCS1B01G400300 chr2A 98.305 177 1 2 1388 1564 463183649 463183823 4.780000e-80 309.0
32 TraesCS1B01G400300 chr2A 96.277 188 3 4 1378 1564 50920002 50920186 6.180000e-79 305.0
33 TraesCS1B01G400300 chr4A 95.408 196 4 4 1374 1564 529621061 529621256 1.720000e-79 307.0
34 TraesCS1B01G400300 chr4A 97.765 179 2 2 1386 1564 569872868 569873044 1.720000e-79 307.0
35 TraesCS1B01G400300 chr4A 97.238 181 3 2 1385 1564 274757789 274757968 6.180000e-79 305.0
36 TraesCS1B01G400300 chr4B 97.253 182 1 4 1385 1564 28155298 28155119 6.180000e-79 305.0
37 TraesCS1B01G400300 chr4B 75.904 249 37 15 4661 4893 553853367 553853608 6.730000e-19 106.0
38 TraesCS1B01G400300 chr7D 89.140 221 18 5 1184 1402 45980863 45980647 2.260000e-68 270.0
39 TraesCS1B01G400300 chr5D 78.605 215 32 14 4609 4816 515340312 515340105 3.990000e-26 130.0
40 TraesCS1B01G400300 chr6D 75.532 282 41 14 4620 4883 287887590 287887861 4.020000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G400300 chr1B 630830709 630835625 4916 True 4193.500000 7978 100.000000 1 4917 2 chr1B.!!$R2 4916
1 TraesCS1B01G400300 chr1D 458886876 458891139 4263 True 1943.666667 4279 93.244667 1 4550 3 chr1D.!!$R1 4549
2 TraesCS1B01G400300 chr1A 551319935 551324196 4261 True 1795.000000 4017 91.741667 1 4476 3 chr1A.!!$R1 4475
3 TraesCS1B01G400300 chr2D 500267640 500268455 815 False 821.000000 821 85.316000 605 1402 1 chr2D.!!$F1 797
4 TraesCS1B01G400300 chr3B 477885249 477885878 629 True 555.000000 555 82.704000 2895 3524 1 chr3B.!!$R1 629
5 TraesCS1B01G400300 chr3B 183642557 183643076 519 False 296.500000 350 89.074000 1195 1869 2 chr3B.!!$F2 674
6 TraesCS1B01G400300 chr3D 366453736 366454356 620 True 549.000000 549 82.830000 2895 3515 1 chr3D.!!$R1 620
7 TraesCS1B01G400300 chr3A 488721960 488722588 628 True 547.000000 547 82.520000 2895 3523 1 chr3A.!!$R2 628
8 TraesCS1B01G400300 chr6B 714479 715069 590 False 351.000000 363 89.454000 1100 1872 2 chr6B.!!$F2 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 56 1.102978 CATCCCGAATCAAACACCCC 58.897 55.0 0.0 0.0 0.0 4.95 F
1413 1465 0.035630 CTGTCTGAAGGGGAGCCTTG 60.036 60.0 0.0 0.0 0.0 3.61 F
2625 2783 0.038159 AGTGTGCTCTTGTCTACGGC 60.038 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1606 0.034616 CTGCAGGCCTATGTAGCTCC 59.965 60.0 3.98 0.0 0.0 4.70 R
3089 3248 0.384309 TAGTAGCGTCAAGATGGGCG 59.616 55.0 0.00 0.0 0.0 6.13 R
4570 4754 0.246635 GAGGCCGAGACTACAAAGCA 59.753 55.0 0.00 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 1.102978 CATCCCGAATCAAACACCCC 58.897 55.000 0.00 0.00 0.00 4.95
627 641 3.591835 CTCTCCTCGCTCCTCCGC 61.592 72.222 0.00 0.00 0.00 5.54
1070 1113 3.331889 GGATCCCCCATCACTGTAATCAT 59.668 47.826 0.00 0.00 32.33 2.45
1086 1129 1.500474 TCATCGCATCTCCCTTTCCT 58.500 50.000 0.00 0.00 0.00 3.36
1196 1239 2.048222 ACTGGCACGTGTCGGATG 60.048 61.111 34.29 16.93 0.00 3.51
1205 1249 1.404391 ACGTGTCGGATGTACATCTCC 59.596 52.381 29.87 18.50 37.92 3.71
1235 1279 6.942005 TCTTTCATCATTACCAATATGCGGAT 59.058 34.615 0.00 0.00 0.00 4.18
1236 1280 7.448161 TCTTTCATCATTACCAATATGCGGATT 59.552 33.333 0.00 0.00 0.00 3.01
1237 1281 6.499234 TCATCATTACCAATATGCGGATTG 57.501 37.500 0.00 3.90 36.70 2.67
1238 1282 4.764679 TCATTACCAATATGCGGATTGC 57.235 40.909 0.00 0.00 46.70 3.56
1246 1290 4.261698 CCAATATGCGGATTGCTTGATTGA 60.262 41.667 8.80 0.00 46.63 2.57
1253 1297 3.305094 CGGATTGCTTGATTGATTGTTGC 59.695 43.478 0.00 0.00 0.00 4.17
1398 1450 9.955208 TTAATTTTGATCATATGTGCATCTGTC 57.045 29.630 1.90 0.00 0.00 3.51
1402 1454 5.920903 TGATCATATGTGCATCTGTCTGAA 58.079 37.500 1.90 0.00 0.00 3.02
1403 1455 5.989777 TGATCATATGTGCATCTGTCTGAAG 59.010 40.000 1.90 0.00 0.00 3.02
1404 1456 4.700700 TCATATGTGCATCTGTCTGAAGG 58.299 43.478 1.90 0.00 0.00 3.46
1405 1457 2.414994 ATGTGCATCTGTCTGAAGGG 57.585 50.000 0.00 0.00 0.00 3.95
1406 1458 0.325933 TGTGCATCTGTCTGAAGGGG 59.674 55.000 0.00 0.00 0.00 4.79
1407 1459 0.615331 GTGCATCTGTCTGAAGGGGA 59.385 55.000 0.00 0.00 0.00 4.81
1408 1460 0.907486 TGCATCTGTCTGAAGGGGAG 59.093 55.000 0.00 0.00 0.00 4.30
1409 1461 0.463474 GCATCTGTCTGAAGGGGAGC 60.463 60.000 0.00 0.00 0.00 4.70
1410 1462 0.179936 CATCTGTCTGAAGGGGAGCC 59.820 60.000 0.00 0.00 0.00 4.70
1411 1463 0.043940 ATCTGTCTGAAGGGGAGCCT 59.956 55.000 0.00 0.00 0.00 4.58
1412 1464 0.178891 TCTGTCTGAAGGGGAGCCTT 60.179 55.000 0.00 0.00 0.00 4.35
1413 1465 0.035630 CTGTCTGAAGGGGAGCCTTG 60.036 60.000 0.00 0.00 0.00 3.61
1414 1466 1.301293 GTCTGAAGGGGAGCCTTGG 59.699 63.158 0.00 0.00 0.00 3.61
1415 1467 2.044551 CTGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
1416 1468 3.984193 CTGAAGGGGAGCCTTGGCG 62.984 68.421 5.95 0.00 0.00 5.69
1424 1476 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1425 1477 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1426 1478 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1427 1479 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1428 1480 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1429 1481 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1430 1482 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1435 1487 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1436 1488 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1437 1489 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1438 1490 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1439 1491 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1440 1492 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1441 1493 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1442 1494 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1443 1495 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1444 1496 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1445 1497 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1446 1498 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1447 1499 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1448 1500 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1449 1501 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1464 1516 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
1465 1517 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
1466 1518 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
1467 1519 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
1468 1520 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
1469 1521 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
1470 1522 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
1471 1523 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
1472 1524 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
1473 1525 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
1487 1539 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1488 1540 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1489 1541 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1490 1542 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1491 1543 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1492 1544 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1493 1545 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1494 1546 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1495 1547 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1496 1548 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1497 1549 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1498 1550 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1499 1551 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1500 1552 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1501 1553 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1502 1554 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1503 1555 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1504 1556 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1505 1557 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1506 1558 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1507 1559 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1508 1560 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1509 1561 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1510 1562 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1511 1563 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1512 1564 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1513 1565 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1514 1566 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1515 1567 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1516 1568 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1517 1569 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1518 1570 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1519 1571 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1520 1572 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1521 1573 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1522 1574 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1523 1575 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1524 1576 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1529 1581 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1530 1582 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1531 1583 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1532 1584 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1533 1585 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1534 1586 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1535 1587 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1536 1588 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1537 1589 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1538 1590 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1539 1591 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1540 1592 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1541 1593 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1542 1594 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1543 1595 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1544 1596 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1545 1597 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1546 1598 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1547 1599 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1548 1600 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1589 1641 1.805428 GCAGCCACCGGTTGTTCAAT 61.805 55.000 2.97 0.00 36.29 2.57
1590 1642 0.673437 CAGCCACCGGTTGTTCAATT 59.327 50.000 2.97 0.00 0.00 2.32
1591 1643 1.883275 CAGCCACCGGTTGTTCAATTA 59.117 47.619 2.97 0.00 0.00 1.40
1592 1644 2.294791 CAGCCACCGGTTGTTCAATTAA 59.705 45.455 2.97 0.00 0.00 1.40
1593 1645 2.556622 AGCCACCGGTTGTTCAATTAAG 59.443 45.455 2.97 0.00 0.00 1.85
1594 1646 2.295070 GCCACCGGTTGTTCAATTAAGT 59.705 45.455 2.97 0.00 0.00 2.24
1595 1647 3.610821 GCCACCGGTTGTTCAATTAAGTC 60.611 47.826 2.97 0.00 0.00 3.01
1657 1709 7.103641 TGCTTAGTGAATACTAGAAACTTGGG 58.896 38.462 0.00 0.00 40.33 4.12
1661 1713 9.856162 TTAGTGAATACTAGAAACTTGGGTTTT 57.144 29.630 0.00 0.00 40.04 2.43
1742 1799 5.914743 ATGTATACATGTACACTGGTGGTGC 60.915 44.000 17.60 0.00 41.22 5.01
1872 2013 5.749596 TCATTAATGTTATTGGTGAGCCG 57.250 39.130 14.97 0.00 37.67 5.52
1955 2097 7.842743 ACCTATTTATGGAGGAGTTGTGTACTA 59.157 37.037 0.00 0.00 37.17 1.82
2139 2297 4.374843 TCATGTAACCATTGAATGCAGC 57.625 40.909 0.00 0.00 0.00 5.25
2176 2334 9.579768 GTGCCATAATGTAACAAATGTTAATCA 57.420 29.630 7.53 3.81 41.58 2.57
2376 2534 4.455533 TGTGTAGCTGCTTCTTATGGTTTG 59.544 41.667 7.79 0.00 0.00 2.93
2406 2564 2.823747 ACCCGGCTTATTTGTTTTCCTC 59.176 45.455 0.00 0.00 0.00 3.71
2434 2592 2.325583 TCTCTGTTTTCGCTGGTGTT 57.674 45.000 0.00 0.00 0.00 3.32
2500 2658 6.939730 TGATTGAAAGTGGTGTCATTAAGCTA 59.060 34.615 0.00 0.00 0.00 3.32
2509 2667 6.818644 GTGGTGTCATTAAGCTAGATGAGAAA 59.181 38.462 11.11 2.12 33.27 2.52
2625 2783 0.038159 AGTGTGCTCTTGTCTACGGC 60.038 55.000 0.00 0.00 0.00 5.68
2700 2858 2.884012 TGTTGCTGAACATTTCCGTGAT 59.116 40.909 0.00 0.00 37.15 3.06
2819 2977 3.255395 TGTGCTCCATATTGTGTTGTTGG 59.745 43.478 0.00 0.00 0.00 3.77
2832 2990 7.581213 TTGTGTTGTTGGACAATATTTCTCT 57.419 32.000 0.00 0.00 40.59 3.10
2868 3026 6.127897 GCTGTTACCATTGCTATCAAGTCTTT 60.128 38.462 0.00 0.00 35.37 2.52
3089 3248 0.107945 CTGCTCCTGCTACCACCTTC 60.108 60.000 0.00 0.00 40.48 3.46
3142 3301 2.232941 GACAGGTTTGTCCATCGTCCTA 59.767 50.000 0.00 0.00 46.47 2.94
3143 3302 2.028385 ACAGGTTTGTCCATCGTCCTAC 60.028 50.000 0.00 0.00 39.02 3.18
3159 3318 9.010366 CATCGTCCTACGTACATAATCATTATG 57.990 37.037 14.85 14.85 43.99 1.90
3506 3665 3.648545 AGTATGTGGATCTAAAGGAGGGC 59.351 47.826 0.00 0.00 0.00 5.19
3538 3697 5.512942 TTCCAGGTGAGAATTGAACCATA 57.487 39.130 4.17 0.00 36.37 2.74
3586 3745 8.903820 AGTAATGCCATTATTTTAGAAGTGTCC 58.096 33.333 0.00 0.00 0.00 4.02
3614 3773 6.375736 TCATGAAAATTAGTCGGTATTTGCCA 59.624 34.615 0.00 0.00 0.00 4.92
3615 3774 6.767524 TGAAAATTAGTCGGTATTTGCCAT 57.232 33.333 0.00 0.00 0.00 4.40
3634 3793 1.255882 TATGCTTGCAAACCTGTGGG 58.744 50.000 0.00 0.00 38.88 4.61
3672 3831 8.658609 GCATGAACATTGCACAAAACTTATTAT 58.341 29.630 0.00 0.00 0.00 1.28
3693 3852 7.936496 TTATGTTTCTGTTGCTTATGATCCA 57.064 32.000 0.00 0.00 0.00 3.41
3694 3853 8.523915 TTATGTTTCTGTTGCTTATGATCCAT 57.476 30.769 0.00 0.00 0.00 3.41
3695 3854 6.441093 TGTTTCTGTTGCTTATGATCCATC 57.559 37.500 0.00 0.00 0.00 3.51
3697 3856 6.660521 TGTTTCTGTTGCTTATGATCCATCTT 59.339 34.615 0.00 0.00 0.00 2.40
3698 3857 7.828717 TGTTTCTGTTGCTTATGATCCATCTTA 59.171 33.333 0.00 0.00 0.00 2.10
3699 3858 7.792374 TTCTGTTGCTTATGATCCATCTTAC 57.208 36.000 0.00 0.00 0.00 2.34
3700 3859 7.129457 TCTGTTGCTTATGATCCATCTTACT 57.871 36.000 0.00 0.00 0.00 2.24
3701 3860 6.988580 TCTGTTGCTTATGATCCATCTTACTG 59.011 38.462 0.00 0.00 0.00 2.74
3772 3943 3.194861 TGACTGCTCGGTTATATTGTGC 58.805 45.455 0.00 0.00 0.00 4.57
3783 3954 0.523968 ATATTGTGCGCGCTTTGCTG 60.524 50.000 33.29 0.00 43.27 4.41
3789 3960 2.202388 CGCGCTTTGCTGACATGG 60.202 61.111 5.56 0.00 43.27 3.66
3919 4090 0.443869 CCAACGAGAACGCTTGATGG 59.556 55.000 0.00 0.00 40.72 3.51
3928 4099 3.490890 GCTTGATGGCGAGGTGTC 58.509 61.111 0.00 0.00 0.00 3.67
3932 4103 2.509336 GATGGCGAGGTGTCACCG 60.509 66.667 16.44 6.81 44.90 4.94
4118 4289 2.880890 CAGCAACACTACTCTTGGCTTT 59.119 45.455 0.00 0.00 0.00 3.51
4120 4291 2.030805 GCAACACTACTCTTGGCTTTGG 60.031 50.000 0.00 0.00 0.00 3.28
4121 4292 3.476552 CAACACTACTCTTGGCTTTGGA 58.523 45.455 0.00 0.00 0.00 3.53
4122 4293 3.857157 ACACTACTCTTGGCTTTGGAA 57.143 42.857 0.00 0.00 0.00 3.53
4209 4381 2.201732 GCGAAGTTGTCTGTGTTCAGA 58.798 47.619 0.00 0.00 46.85 3.27
4225 4397 7.278875 TGTGTTCAGATTTTTAAAATGGCCTT 58.721 30.769 7.72 0.00 0.00 4.35
4231 4403 9.838339 TCAGATTTTTAAAATGGCCTTGTTTTA 57.162 25.926 7.72 10.35 0.00 1.52
4259 4431 3.695816 GTGTCTTGTTTGGTTTCTCTGC 58.304 45.455 0.00 0.00 0.00 4.26
4260 4432 2.687935 TGTCTTGTTTGGTTTCTCTGCC 59.312 45.455 0.00 0.00 0.00 4.85
4269 4442 4.574674 TGGTTTCTCTGCCAACATAGAT 57.425 40.909 0.00 0.00 29.97 1.98
4270 4443 4.264253 TGGTTTCTCTGCCAACATAGATG 58.736 43.478 0.00 0.00 29.97 2.90
4271 4444 3.065925 GGTTTCTCTGCCAACATAGATGC 59.934 47.826 0.00 0.00 29.97 3.91
4273 4446 3.632643 TCTCTGCCAACATAGATGCAA 57.367 42.857 0.00 0.00 32.58 4.08
4303 4476 3.367992 TCAACGCAAGCAATGTCAAAT 57.632 38.095 0.00 0.00 45.62 2.32
4330 4503 0.248012 CGTGTGTGCCACTATGGGTA 59.752 55.000 0.00 0.00 42.20 3.69
4343 4516 5.823045 CCACTATGGGTATCCTGTTTCTTTC 59.177 44.000 0.00 0.00 32.67 2.62
4345 4518 7.112779 CACTATGGGTATCCTGTTTCTTTCTT 58.887 38.462 0.00 0.00 0.00 2.52
4348 4521 7.855784 ATGGGTATCCTGTTTCTTTCTTTTT 57.144 32.000 0.00 0.00 0.00 1.94
4349 4522 7.049799 TGGGTATCCTGTTTCTTTCTTTTTG 57.950 36.000 0.00 0.00 0.00 2.44
4356 4540 7.264947 TCCTGTTTCTTTCTTTTTGATGGTTC 58.735 34.615 0.00 0.00 0.00 3.62
4360 4544 8.100164 TGTTTCTTTCTTTTTGATGGTTCCTTT 58.900 29.630 0.00 0.00 0.00 3.11
4413 4597 2.493035 TGTCAAACATCGCATCTGTGT 58.507 42.857 0.00 0.00 0.00 3.72
4414 4598 2.223845 TGTCAAACATCGCATCTGTGTG 59.776 45.455 0.00 0.00 33.86 3.82
4415 4599 2.224079 GTCAAACATCGCATCTGTGTGT 59.776 45.455 1.68 0.00 34.17 3.72
4416 4600 3.431912 GTCAAACATCGCATCTGTGTGTA 59.568 43.478 1.68 0.00 34.17 2.90
4420 4604 2.138320 CATCGCATCTGTGTGTATCCC 58.862 52.381 0.00 0.00 37.16 3.85
4437 4621 7.069877 TGTATCCCACACTTGTTTAAGTACT 57.930 36.000 0.00 0.00 45.12 2.73
4438 4622 6.932400 TGTATCCCACACTTGTTTAAGTACTG 59.068 38.462 0.00 0.00 45.12 2.74
4439 4623 5.362105 TCCCACACTTGTTTAAGTACTGT 57.638 39.130 0.00 0.00 45.12 3.55
4440 4624 5.747342 TCCCACACTTGTTTAAGTACTGTT 58.253 37.500 0.00 0.00 45.12 3.16
4441 4625 5.587043 TCCCACACTTGTTTAAGTACTGTTG 59.413 40.000 0.00 0.00 45.12 3.33
4442 4626 5.355910 CCCACACTTGTTTAAGTACTGTTGT 59.644 40.000 0.00 0.00 45.12 3.32
4451 4635 7.104939 TGTTTAAGTACTGTTGTTACTGTGGT 58.895 34.615 0.00 0.00 37.10 4.16
4490 4674 8.732746 TTAGTTATGTAGATTCTTGGGAAAGC 57.267 34.615 0.00 0.00 34.90 3.51
4507 4691 5.451520 GGGAAAGCTGATCTTGAATGAATGG 60.452 44.000 0.00 0.00 34.67 3.16
4514 4698 5.957798 TGATCTTGAATGAATGGTTTGCTC 58.042 37.500 0.00 0.00 0.00 4.26
4557 4741 3.240069 CATGCTTTGCTTTGTACTCTGC 58.760 45.455 0.00 0.00 0.00 4.26
4558 4742 2.296792 TGCTTTGCTTTGTACTCTGCA 58.703 42.857 0.00 0.00 0.00 4.41
4559 4743 2.886523 TGCTTTGCTTTGTACTCTGCAT 59.113 40.909 7.75 0.00 35.27 3.96
4560 4744 4.071423 TGCTTTGCTTTGTACTCTGCATA 58.929 39.130 7.75 3.82 35.27 3.14
4561 4745 4.701651 TGCTTTGCTTTGTACTCTGCATAT 59.298 37.500 7.75 0.00 35.27 1.78
4562 4746 5.032863 GCTTTGCTTTGTACTCTGCATATG 58.967 41.667 0.00 0.00 35.27 1.78
4563 4747 4.621068 TTGCTTTGTACTCTGCATATGC 57.379 40.909 21.09 21.09 42.50 3.14
4584 4768 3.740590 CATGCTTTGCTTTGTAGTCTCG 58.259 45.455 0.00 0.00 0.00 4.04
4585 4769 2.143122 TGCTTTGCTTTGTAGTCTCGG 58.857 47.619 0.00 0.00 0.00 4.63
4586 4770 1.135944 GCTTTGCTTTGTAGTCTCGGC 60.136 52.381 0.00 0.00 0.00 5.54
4587 4771 1.464997 CTTTGCTTTGTAGTCTCGGCC 59.535 52.381 0.00 0.00 0.00 6.13
4588 4772 0.685097 TTGCTTTGTAGTCTCGGCCT 59.315 50.000 0.00 0.00 0.00 5.19
4589 4773 0.246635 TGCTTTGTAGTCTCGGCCTC 59.753 55.000 0.00 0.00 0.00 4.70
4590 4774 0.460459 GCTTTGTAGTCTCGGCCTCC 60.460 60.000 0.00 0.00 0.00 4.30
4602 4786 4.115199 GCCTCCGTGGGGCTGATT 62.115 66.667 7.47 0.00 45.57 2.57
4603 4787 2.677228 CCTCCGTGGGGCTGATTT 59.323 61.111 0.00 0.00 0.00 2.17
4604 4788 1.000896 CCTCCGTGGGGCTGATTTT 60.001 57.895 0.00 0.00 0.00 1.82
4605 4789 0.611896 CCTCCGTGGGGCTGATTTTT 60.612 55.000 0.00 0.00 0.00 1.94
4655 4839 9.883142 TTGGTTTCAAAAAGTCTGAAAATATGT 57.117 25.926 0.00 0.00 42.73 2.29
4677 4861 7.905604 TGTATTGAGTAAACAAGGATGTGAG 57.094 36.000 0.00 0.00 40.46 3.51
4678 4862 6.878923 TGTATTGAGTAAACAAGGATGTGAGG 59.121 38.462 0.00 0.00 40.46 3.86
4679 4863 3.674997 TGAGTAAACAAGGATGTGAGGC 58.325 45.455 0.00 0.00 40.46 4.70
4680 4864 2.673368 GAGTAAACAAGGATGTGAGGCG 59.327 50.000 0.00 0.00 40.46 5.52
4681 4865 2.038557 AGTAAACAAGGATGTGAGGCGT 59.961 45.455 0.00 0.00 40.46 5.68
4682 4866 2.851263 AAACAAGGATGTGAGGCGTA 57.149 45.000 0.00 0.00 40.46 4.42
4683 4867 3.350219 AAACAAGGATGTGAGGCGTAT 57.650 42.857 0.00 0.00 40.46 3.06
4684 4868 2.315925 ACAAGGATGTGAGGCGTATG 57.684 50.000 0.00 0.00 38.69 2.39
4685 4869 1.555075 ACAAGGATGTGAGGCGTATGT 59.445 47.619 0.00 0.00 38.69 2.29
4686 4870 1.935873 CAAGGATGTGAGGCGTATGTG 59.064 52.381 0.00 0.00 0.00 3.21
4687 4871 0.179073 AGGATGTGAGGCGTATGTGC 60.179 55.000 0.00 0.00 0.00 4.57
4688 4872 1.490693 GGATGTGAGGCGTATGTGCG 61.491 60.000 0.00 0.00 35.06 5.34
4689 4873 0.806102 GATGTGAGGCGTATGTGCGT 60.806 55.000 0.00 0.00 35.06 5.24
4690 4874 0.458260 ATGTGAGGCGTATGTGCGTA 59.542 50.000 0.00 0.00 35.06 4.42
4691 4875 0.244178 TGTGAGGCGTATGTGCGTAA 59.756 50.000 0.00 0.00 35.06 3.18
4692 4876 1.336980 TGTGAGGCGTATGTGCGTAAA 60.337 47.619 0.00 0.00 35.06 2.01
4693 4877 1.323534 GTGAGGCGTATGTGCGTAAAG 59.676 52.381 0.00 0.00 35.06 1.85
4694 4878 1.067425 TGAGGCGTATGTGCGTAAAGT 60.067 47.619 0.00 0.00 35.06 2.66
4695 4879 1.997606 GAGGCGTATGTGCGTAAAGTT 59.002 47.619 0.00 0.00 35.06 2.66
4696 4880 3.181397 GAGGCGTATGTGCGTAAAGTTA 58.819 45.455 0.00 0.00 35.06 2.24
4697 4881 3.788937 AGGCGTATGTGCGTAAAGTTAT 58.211 40.909 0.00 0.00 35.06 1.89
4698 4882 4.186159 AGGCGTATGTGCGTAAAGTTATT 58.814 39.130 0.00 0.00 35.06 1.40
4699 4883 4.269363 AGGCGTATGTGCGTAAAGTTATTC 59.731 41.667 0.00 0.00 35.06 1.75
4700 4884 4.033129 GGCGTATGTGCGTAAAGTTATTCA 59.967 41.667 0.00 0.00 35.06 2.57
4701 4885 5.188194 GCGTATGTGCGTAAAGTTATTCAG 58.812 41.667 0.00 0.00 0.00 3.02
4702 4886 5.724239 CGTATGTGCGTAAAGTTATTCAGG 58.276 41.667 0.00 0.00 0.00 3.86
4703 4887 5.517411 CGTATGTGCGTAAAGTTATTCAGGA 59.483 40.000 0.00 0.00 0.00 3.86
4704 4888 6.200286 CGTATGTGCGTAAAGTTATTCAGGAT 59.800 38.462 0.00 0.00 0.00 3.24
4705 4889 7.380333 CGTATGTGCGTAAAGTTATTCAGGATA 59.620 37.037 0.00 0.00 0.00 2.59
4706 4890 9.037737 GTATGTGCGTAAAGTTATTCAGGATAA 57.962 33.333 0.00 0.00 0.00 1.75
4707 4891 7.908827 TGTGCGTAAAGTTATTCAGGATAAA 57.091 32.000 0.00 0.00 32.20 1.40
4708 4892 8.325421 TGTGCGTAAAGTTATTCAGGATAAAA 57.675 30.769 0.00 0.00 32.20 1.52
4709 4893 8.952278 TGTGCGTAAAGTTATTCAGGATAAAAT 58.048 29.630 0.00 0.00 32.20 1.82
4712 4896 9.577003 GCGTAAAGTTATTCAGGATAAAATACG 57.423 33.333 13.07 13.07 38.96 3.06
4731 4915 3.845231 CGTTGAAACGTGACATGTACA 57.155 42.857 0.00 0.00 46.63 2.90
4732 4916 4.184889 CGTTGAAACGTGACATGTACAA 57.815 40.909 0.00 8.22 46.63 2.41
4733 4917 4.768145 CGTTGAAACGTGACATGTACAAT 58.232 39.130 17.31 0.00 46.63 2.71
4734 4918 5.907004 CGTTGAAACGTGACATGTACAATA 58.093 37.500 17.31 1.60 46.63 1.90
4735 4919 6.356417 CGTTGAAACGTGACATGTACAATAA 58.644 36.000 17.31 2.82 46.63 1.40
4736 4920 6.846786 CGTTGAAACGTGACATGTACAATAAA 59.153 34.615 17.31 1.14 46.63 1.40
4737 4921 7.373703 CGTTGAAACGTGACATGTACAATAAAA 59.626 33.333 17.31 0.00 46.63 1.52
4738 4922 8.678510 GTTGAAACGTGACATGTACAATAAAAG 58.321 33.333 17.31 0.00 0.00 2.27
4739 4923 8.144155 TGAAACGTGACATGTACAATAAAAGA 57.856 30.769 0.00 0.00 0.00 2.52
4740 4924 8.779303 TGAAACGTGACATGTACAATAAAAGAT 58.221 29.630 0.00 0.00 0.00 2.40
4773 4957 9.781425 ATGGTCTTAGAGGATGAATAGTATCAT 57.219 33.333 0.00 0.00 42.62 2.45
4774 4958 9.029368 TGGTCTTAGAGGATGAATAGTATCATG 57.971 37.037 0.00 0.00 40.08 3.07
4775 4959 9.030452 GGTCTTAGAGGATGAATAGTATCATGT 57.970 37.037 0.00 0.00 40.08 3.21
4776 4960 9.853555 GTCTTAGAGGATGAATAGTATCATGTG 57.146 37.037 0.00 0.00 40.08 3.21
4777 4961 9.593565 TCTTAGAGGATGAATAGTATCATGTGT 57.406 33.333 0.00 0.00 40.08 3.72
4778 4962 9.853555 CTTAGAGGATGAATAGTATCATGTGTC 57.146 37.037 0.00 0.00 40.08 3.67
4779 4963 6.918626 AGAGGATGAATAGTATCATGTGTCG 58.081 40.000 0.00 0.00 40.08 4.35
4780 4964 6.717084 AGAGGATGAATAGTATCATGTGTCGA 59.283 38.462 0.00 0.00 40.08 4.20
4781 4965 7.231519 AGAGGATGAATAGTATCATGTGTCGAA 59.768 37.037 0.00 0.00 40.08 3.71
4782 4966 7.726216 AGGATGAATAGTATCATGTGTCGAAA 58.274 34.615 0.00 0.00 40.08 3.46
4783 4967 7.869937 AGGATGAATAGTATCATGTGTCGAAAG 59.130 37.037 0.00 0.00 40.08 2.62
4784 4968 6.828502 TGAATAGTATCATGTGTCGAAAGC 57.171 37.500 0.00 0.00 0.00 3.51
4785 4969 5.753438 TGAATAGTATCATGTGTCGAAAGCC 59.247 40.000 0.00 0.00 0.00 4.35
4786 4970 2.906354 AGTATCATGTGTCGAAAGCCC 58.094 47.619 0.00 0.00 0.00 5.19
4787 4971 2.501723 AGTATCATGTGTCGAAAGCCCT 59.498 45.455 0.00 0.00 0.00 5.19
4788 4972 3.704566 AGTATCATGTGTCGAAAGCCCTA 59.295 43.478 0.00 0.00 0.00 3.53
4789 4973 2.672961 TCATGTGTCGAAAGCCCTAG 57.327 50.000 0.00 0.00 0.00 3.02
4790 4974 2.176045 TCATGTGTCGAAAGCCCTAGA 58.824 47.619 0.00 0.00 0.00 2.43
4791 4975 2.766263 TCATGTGTCGAAAGCCCTAGAT 59.234 45.455 0.00 0.00 0.00 1.98
4792 4976 3.197766 TCATGTGTCGAAAGCCCTAGATT 59.802 43.478 0.00 0.00 0.00 2.40
4793 4977 3.695830 TGTGTCGAAAGCCCTAGATTT 57.304 42.857 0.00 0.00 33.35 2.17
4794 4978 3.334691 TGTGTCGAAAGCCCTAGATTTG 58.665 45.455 0.00 0.00 30.04 2.32
4795 4979 3.244422 TGTGTCGAAAGCCCTAGATTTGT 60.244 43.478 0.00 0.00 30.04 2.83
4796 4980 3.371285 GTGTCGAAAGCCCTAGATTTGTC 59.629 47.826 0.00 0.00 30.04 3.18
4797 4981 3.260884 TGTCGAAAGCCCTAGATTTGTCT 59.739 43.478 0.00 0.00 30.04 3.41
4798 4982 4.254492 GTCGAAAGCCCTAGATTTGTCTT 58.746 43.478 0.00 0.00 30.04 3.01
4799 4983 4.695928 GTCGAAAGCCCTAGATTTGTCTTT 59.304 41.667 0.00 0.00 30.04 2.52
4800 4984 5.181433 GTCGAAAGCCCTAGATTTGTCTTTT 59.819 40.000 0.00 0.00 30.04 2.27
4801 4985 5.768164 TCGAAAGCCCTAGATTTGTCTTTTT 59.232 36.000 0.00 0.00 30.04 1.94
4820 5004 5.957842 TTTTTGCACATCCTATTTCGTCT 57.042 34.783 0.00 0.00 0.00 4.18
4821 5005 5.957842 TTTTGCACATCCTATTTCGTCTT 57.042 34.783 0.00 0.00 0.00 3.01
4822 5006 4.944962 TTGCACATCCTATTTCGTCTTG 57.055 40.909 0.00 0.00 0.00 3.02
4823 5007 4.200838 TGCACATCCTATTTCGTCTTGA 57.799 40.909 0.00 0.00 0.00 3.02
4824 5008 4.574892 TGCACATCCTATTTCGTCTTGAA 58.425 39.130 0.00 0.00 33.85 2.69
4836 5020 5.412526 TTCGTCTTGAAAATTTACACGCT 57.587 34.783 0.00 0.00 32.37 5.07
4837 5021 5.412526 TCGTCTTGAAAATTTACACGCTT 57.587 34.783 0.00 0.00 0.00 4.68
4838 5022 6.528014 TCGTCTTGAAAATTTACACGCTTA 57.472 33.333 0.00 0.00 0.00 3.09
4839 5023 7.124347 TCGTCTTGAAAATTTACACGCTTAT 57.876 32.000 0.00 0.00 0.00 1.73
4840 5024 8.242085 TCGTCTTGAAAATTTACACGCTTATA 57.758 30.769 0.00 0.00 0.00 0.98
4841 5025 8.164153 TCGTCTTGAAAATTTACACGCTTATAC 58.836 33.333 0.00 0.00 0.00 1.47
4842 5026 7.953173 CGTCTTGAAAATTTACACGCTTATACA 59.047 33.333 0.00 0.00 0.00 2.29
4843 5027 9.047871 GTCTTGAAAATTTACACGCTTATACAC 57.952 33.333 0.00 0.00 0.00 2.90
4844 5028 8.995220 TCTTGAAAATTTACACGCTTATACACT 58.005 29.630 0.00 0.00 0.00 3.55
4852 5036 9.688592 ATTTACACGCTTATACACTATACCTTC 57.311 33.333 0.00 0.00 0.00 3.46
4853 5037 6.704289 ACACGCTTATACACTATACCTTCA 57.296 37.500 0.00 0.00 0.00 3.02
4854 5038 7.286215 ACACGCTTATACACTATACCTTCAT 57.714 36.000 0.00 0.00 0.00 2.57
4855 5039 7.368833 ACACGCTTATACACTATACCTTCATC 58.631 38.462 0.00 0.00 0.00 2.92
4856 5040 7.230913 ACACGCTTATACACTATACCTTCATCT 59.769 37.037 0.00 0.00 0.00 2.90
4857 5041 8.727910 CACGCTTATACACTATACCTTCATCTA 58.272 37.037 0.00 0.00 0.00 1.98
4858 5042 9.463902 ACGCTTATACACTATACCTTCATCTAT 57.536 33.333 0.00 0.00 0.00 1.98
4859 5043 9.938670 CGCTTATACACTATACCTTCATCTATC 57.061 37.037 0.00 0.00 0.00 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.690778 ATTGTGGCTTCGCTTCGCC 61.691 57.895 0.00 0.00 46.46 5.54
17 18 0.810648 TGGATTCATTGTGGCTTCGC 59.189 50.000 0.00 0.00 0.00 4.70
164 178 0.602905 GGTATCGAAGGGCGGAATGG 60.603 60.000 0.00 0.00 41.33 3.16
783 826 3.691110 GACGTACTTGTCGGAGGTC 57.309 57.895 0.00 0.00 0.00 3.85
1070 1113 1.115467 GAGAGGAAAGGGAGATGCGA 58.885 55.000 0.00 0.00 0.00 5.10
1115 1158 1.926561 TTTCATCAGATCGAGCACGG 58.073 50.000 2.38 0.00 40.21 4.94
1232 1276 3.305094 CGCAACAATCAATCAAGCAATCC 59.695 43.478 0.00 0.00 0.00 3.01
1235 1279 3.367992 ACGCAACAATCAATCAAGCAA 57.632 38.095 0.00 0.00 0.00 3.91
1236 1280 3.307674 GAACGCAACAATCAATCAAGCA 58.692 40.909 0.00 0.00 0.00 3.91
1237 1281 2.663119 GGAACGCAACAATCAATCAAGC 59.337 45.455 0.00 0.00 0.00 4.01
1406 1458 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1407 1459 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1408 1460 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1409 1461 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1410 1462 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1411 1463 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1412 1464 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1413 1465 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1417 1469 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1418 1470 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1419 1471 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1420 1472 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1421 1473 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1422 1474 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1423 1475 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1424 1476 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1425 1477 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1426 1478 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1427 1479 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1428 1480 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1429 1481 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1430 1482 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1431 1483 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1432 1484 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1444 1496 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
1445 1497 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
1446 1498 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
1447 1499 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
1448 1500 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
1449 1501 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
1450 1502 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
1451 1503 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
1452 1504 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
1453 1505 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
1454 1506 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1464 1516 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1465 1517 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1477 1529 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1478 1530 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1479 1531 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1480 1532 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1481 1533 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1482 1534 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1483 1535 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1484 1536 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1485 1537 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1486 1538 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1487 1539 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1488 1540 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1489 1541 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1490 1542 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1491 1543 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1492 1544 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1493 1545 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1494 1546 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1495 1547 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1496 1548 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1497 1549 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1498 1550 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1499 1551 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1500 1552 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1501 1553 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1502 1554 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1503 1555 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1513 1565 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1514 1566 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1515 1567 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1516 1568 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1517 1569 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1518 1570 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1519 1571 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1520 1572 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1521 1573 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1522 1574 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1523 1575 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1524 1576 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1525 1577 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1526 1578 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1527 1579 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1528 1580 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1529 1581 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1530 1582 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1531 1583 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1543 1595 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1545 1597 2.971428 TATGTAGCTCCCGCTTGCGC 62.971 60.000 9.71 0.00 46.47 6.09
1546 1598 0.941463 CTATGTAGCTCCCGCTTGCG 60.941 60.000 8.14 8.14 46.47 4.85
1547 1599 0.601311 CCTATGTAGCTCCCGCTTGC 60.601 60.000 0.00 0.00 46.47 4.01
1548 1600 0.601311 GCCTATGTAGCTCCCGCTTG 60.601 60.000 0.00 0.00 46.47 4.01
1549 1601 1.749033 GCCTATGTAGCTCCCGCTT 59.251 57.895 0.00 0.00 46.47 4.68
1551 1603 2.210711 AGGCCTATGTAGCTCCCGC 61.211 63.158 1.29 0.00 0.00 6.13
1552 1604 1.668294 CAGGCCTATGTAGCTCCCG 59.332 63.158 3.98 0.00 0.00 5.14
1553 1605 1.373059 GCAGGCCTATGTAGCTCCC 59.627 63.158 3.98 0.00 0.00 4.30
1554 1606 0.034616 CTGCAGGCCTATGTAGCTCC 59.965 60.000 3.98 0.00 0.00 4.70
1555 1607 3.603144 CTGCAGGCCTATGTAGCTC 57.397 57.895 3.98 0.00 0.00 4.09
1579 1631 8.837389 ACAGACTTAAGACTTAATTGAACAACC 58.163 33.333 10.09 0.00 0.00 3.77
1589 1641 9.444600 ACTGAAACAAACAGACTTAAGACTTAA 57.555 29.630 10.09 7.42 38.55 1.85
1590 1642 9.444600 AACTGAAACAAACAGACTTAAGACTTA 57.555 29.630 10.09 0.00 38.55 2.24
1591 1643 7.923414 ACTGAAACAAACAGACTTAAGACTT 57.077 32.000 10.09 0.00 38.55 3.01
1592 1644 7.923414 AACTGAAACAAACAGACTTAAGACT 57.077 32.000 10.09 5.42 38.55 3.24
1625 1677 8.758633 TTCTAGTATTCACTAAGCAACACTTC 57.241 34.615 0.00 0.00 39.97 3.01
1657 1709 3.217681 TCCCACTAAGGACACCAAAAC 57.782 47.619 0.00 0.00 41.22 2.43
1661 1713 2.335681 TGATCCCACTAAGGACACCA 57.664 50.000 0.00 0.00 39.24 4.17
1712 1764 9.143631 CACCAGTGTACATGTATACATCATATG 57.856 37.037 27.93 18.16 37.40 1.78
1742 1799 8.786898 TGAGTATGATTCAACTTCCAAAAAGAG 58.213 33.333 0.00 0.00 0.00 2.85
1857 1998 3.006940 GTCAATCGGCTCACCAATAACA 58.993 45.455 0.00 0.00 34.57 2.41
2167 2325 8.049117 ACAGAACCATCACACTATGATTAACAT 58.951 33.333 0.00 0.00 46.54 2.71
2176 2334 6.381133 TGTCAGATACAGAACCATCACACTAT 59.619 38.462 0.00 0.00 33.01 2.12
2350 2508 4.637534 ACCATAAGAAGCAGCTACACAATG 59.362 41.667 0.00 0.00 0.00 2.82
2376 2534 2.256117 ATAAGCCGGGTACAATCAGC 57.744 50.000 6.57 0.00 0.00 4.26
2406 2564 2.287009 GCGAAAACAGAGAAACCACCTG 60.287 50.000 0.00 0.00 0.00 4.00
2500 2658 8.328758 TCCATAACAATTACCTGTTTCTCATCT 58.671 33.333 0.00 0.00 40.08 2.90
2509 2667 8.472007 TTTCAAACTCCATAACAATTACCTGT 57.528 30.769 0.00 0.00 0.00 4.00
2625 2783 2.406616 CGGGGGCTCGTTCATTTGG 61.407 63.158 0.00 0.00 0.00 3.28
2700 2858 1.072806 AGCACATCTTGTCCTTCAGCA 59.927 47.619 0.00 0.00 0.00 4.41
2819 2977 8.951243 AGCAGGTTAGAAAAGAGAAATATTGTC 58.049 33.333 0.00 0.00 0.00 3.18
3089 3248 0.384309 TAGTAGCGTCAAGATGGGCG 59.616 55.000 0.00 0.00 0.00 6.13
3134 3293 7.701078 GCATAATGATTATGTACGTAGGACGAT 59.299 37.037 22.16 0.00 43.34 3.73
3142 3301 5.235401 TGCGTTGCATAATGATTATGTACGT 59.765 36.000 31.01 0.00 45.08 3.57
3143 3302 5.560005 GTGCGTTGCATAATGATTATGTACG 59.440 40.000 29.20 29.20 45.50 3.67
3159 3318 0.984109 GCATATTGTGTGTGCGTTGC 59.016 50.000 0.00 0.00 35.18 4.17
3506 3665 1.873591 CTCACCTGGAAACTTTGGACG 59.126 52.381 0.00 0.00 0.00 4.79
3584 3743 3.194861 CCGACTAATTTTCATGAGCGGA 58.805 45.455 0.00 0.00 38.57 5.54
3586 3745 5.907197 ATACCGACTAATTTTCATGAGCG 57.093 39.130 0.00 0.00 0.00 5.03
3614 3773 1.826720 CCCACAGGTTTGCAAGCATAT 59.173 47.619 15.54 0.00 0.00 1.78
3615 3774 1.255882 CCCACAGGTTTGCAAGCATA 58.744 50.000 15.54 0.00 0.00 3.14
3672 3831 6.182627 AGATGGATCATAAGCAACAGAAACA 58.817 36.000 0.00 0.00 0.00 2.83
3692 3851 6.233430 CACAAAAGAGTGTCCAGTAAGATG 57.767 41.667 0.00 0.00 34.83 2.90
3783 3954 0.729116 CACGATTCACCAGCCATGTC 59.271 55.000 0.00 0.00 0.00 3.06
3789 3960 2.401766 CCCTGCACGATTCACCAGC 61.402 63.158 0.00 0.00 0.00 4.85
3889 4060 0.456221 TCTCGTTGGCGATCTTCTCC 59.544 55.000 0.00 0.00 46.80 3.71
3903 4074 3.876300 GCCATCAAGCGTTCTCGT 58.124 55.556 0.00 0.00 39.49 4.18
3928 4099 4.690719 TTGTACAGGGCGGCGGTG 62.691 66.667 9.78 11.16 0.00 4.94
3932 4103 1.525941 TTTAACTTGTACAGGGCGGC 58.474 50.000 10.04 0.00 0.00 6.53
4127 4298 2.697751 TGCATTACAAAGGGCACAAGTT 59.302 40.909 0.00 0.00 0.00 2.66
4225 4397 6.412460 CAAACAAGACACGACGTATAAAACA 58.588 36.000 0.00 0.00 0.00 2.83
4231 4403 3.102052 ACCAAACAAGACACGACGTAT 57.898 42.857 0.00 0.00 0.00 3.06
4273 4446 8.477984 ACATTGCTTGCGTTGATTATATTTTT 57.522 26.923 2.42 0.00 0.00 1.94
4277 4450 6.375945 TGACATTGCTTGCGTTGATTATAT 57.624 33.333 2.42 0.00 0.00 0.86
4279 4452 4.700268 TGACATTGCTTGCGTTGATTAT 57.300 36.364 2.42 0.00 0.00 1.28
4280 4453 4.495911 TTGACATTGCTTGCGTTGATTA 57.504 36.364 2.42 0.00 0.00 1.75
4303 4476 1.216710 TGGCACACACGATGCGATA 59.783 52.632 0.00 0.00 44.37 2.92
4330 4503 7.365497 ACCATCAAAAAGAAAGAAACAGGAT 57.635 32.000 0.00 0.00 0.00 3.24
4343 4516 9.709495 TTATCATCAAAAGGAACCATCAAAAAG 57.291 29.630 0.00 0.00 0.00 2.27
4345 4518 8.646004 TGTTATCATCAAAAGGAACCATCAAAA 58.354 29.630 0.00 0.00 0.00 2.44
4348 4521 7.959658 ATGTTATCATCAAAAGGAACCATCA 57.040 32.000 0.00 0.00 0.00 3.07
4349 4522 9.342308 TCTATGTTATCATCAAAAGGAACCATC 57.658 33.333 0.00 0.00 35.70 3.51
4413 4597 6.932400 CAGTACTTAAACAAGTGTGGGATACA 59.068 38.462 0.00 0.00 36.82 2.29
4414 4598 6.932960 ACAGTACTTAAACAAGTGTGGGATAC 59.067 38.462 0.00 0.00 34.37 2.24
4415 4599 7.069877 ACAGTACTTAAACAAGTGTGGGATA 57.930 36.000 0.00 0.00 34.37 2.59
4416 4600 5.937111 ACAGTACTTAAACAAGTGTGGGAT 58.063 37.500 0.00 0.00 34.37 3.85
4420 4604 8.662141 AGTAACAACAGTACTTAAACAAGTGTG 58.338 33.333 0.00 1.35 34.37 3.82
4434 4618 5.521010 CGAAGAAACCACAGTAACAACAGTA 59.479 40.000 0.00 0.00 0.00 2.74
4435 4619 4.331717 CGAAGAAACCACAGTAACAACAGT 59.668 41.667 0.00 0.00 0.00 3.55
4436 4620 4.331717 ACGAAGAAACCACAGTAACAACAG 59.668 41.667 0.00 0.00 0.00 3.16
4437 4621 4.255301 ACGAAGAAACCACAGTAACAACA 58.745 39.130 0.00 0.00 0.00 3.33
4438 4622 4.870221 ACGAAGAAACCACAGTAACAAC 57.130 40.909 0.00 0.00 0.00 3.32
4439 4623 6.108015 ACTTACGAAGAAACCACAGTAACAA 58.892 36.000 0.00 0.00 0.00 2.83
4440 4624 5.663456 ACTTACGAAGAAACCACAGTAACA 58.337 37.500 0.00 0.00 0.00 2.41
4441 4625 6.594284 AACTTACGAAGAAACCACAGTAAC 57.406 37.500 0.00 0.00 0.00 2.50
4442 4626 7.614124 AAAACTTACGAAGAAACCACAGTAA 57.386 32.000 0.00 0.00 0.00 2.24
4478 4662 4.371624 TCAAGATCAGCTTTCCCAAGAA 57.628 40.909 0.00 0.00 33.60 2.52
4488 4672 5.623824 GCAAACCATTCATTCAAGATCAGCT 60.624 40.000 0.00 0.00 0.00 4.24
4490 4674 5.962433 AGCAAACCATTCATTCAAGATCAG 58.038 37.500 0.00 0.00 0.00 2.90
4507 4691 3.184581 CAGAGTACTTCCGTTGAGCAAAC 59.815 47.826 0.00 0.00 35.25 2.93
4514 4698 3.246226 GCATATGCAGAGTACTTCCGTTG 59.754 47.826 22.84 0.00 41.59 4.10
4563 4747 3.425359 CCGAGACTACAAAGCAAAGCATG 60.425 47.826 0.00 0.00 0.00 4.06
4564 4748 2.744202 CCGAGACTACAAAGCAAAGCAT 59.256 45.455 0.00 0.00 0.00 3.79
4565 4749 2.143122 CCGAGACTACAAAGCAAAGCA 58.857 47.619 0.00 0.00 0.00 3.91
4566 4750 1.135944 GCCGAGACTACAAAGCAAAGC 60.136 52.381 0.00 0.00 0.00 3.51
4567 4751 1.464997 GGCCGAGACTACAAAGCAAAG 59.535 52.381 0.00 0.00 0.00 2.77
4568 4752 1.071699 AGGCCGAGACTACAAAGCAAA 59.928 47.619 0.00 0.00 0.00 3.68
4569 4753 0.685097 AGGCCGAGACTACAAAGCAA 59.315 50.000 0.00 0.00 0.00 3.91
4570 4754 0.246635 GAGGCCGAGACTACAAAGCA 59.753 55.000 0.00 0.00 0.00 3.91
4571 4755 0.460459 GGAGGCCGAGACTACAAAGC 60.460 60.000 0.00 0.00 0.00 3.51
4572 4756 3.742983 GGAGGCCGAGACTACAAAG 57.257 57.895 0.00 0.00 0.00 2.77
4586 4770 0.611896 AAAAATCAGCCCCACGGAGG 60.612 55.000 0.00 0.00 37.03 4.30
4587 4771 2.961424 AAAAATCAGCCCCACGGAG 58.039 52.632 0.00 0.00 0.00 4.63
4620 4804 9.890352 CAGACTTTTTGAAACCAAAATTTTCAA 57.110 25.926 0.00 6.23 46.36 2.69
4621 4805 9.277783 TCAGACTTTTTGAAACCAAAATTTTCA 57.722 25.926 0.00 0.00 41.49 2.69
4629 4813 9.883142 ACATATTTTCAGACTTTTTGAAACCAA 57.117 25.926 0.31 0.00 42.44 3.67
4651 4835 9.599866 CTCACATCCTTGTTTACTCAATACATA 57.400 33.333 0.00 0.00 32.34 2.29
4652 4836 7.554118 CCTCACATCCTTGTTTACTCAATACAT 59.446 37.037 0.00 0.00 32.34 2.29
4653 4837 6.878923 CCTCACATCCTTGTTTACTCAATACA 59.121 38.462 0.00 0.00 32.34 2.29
4654 4838 6.183360 GCCTCACATCCTTGTTTACTCAATAC 60.183 42.308 0.00 0.00 32.34 1.89
4655 4839 5.880332 GCCTCACATCCTTGTTTACTCAATA 59.120 40.000 0.00 0.00 32.34 1.90
4656 4840 4.702131 GCCTCACATCCTTGTTTACTCAAT 59.298 41.667 0.00 0.00 32.34 2.57
4657 4841 4.072131 GCCTCACATCCTTGTTTACTCAA 58.928 43.478 0.00 0.00 32.34 3.02
4658 4842 3.674997 GCCTCACATCCTTGTTTACTCA 58.325 45.455 0.00 0.00 32.34 3.41
4659 4843 2.673368 CGCCTCACATCCTTGTTTACTC 59.327 50.000 0.00 0.00 32.34 2.59
4660 4844 2.038557 ACGCCTCACATCCTTGTTTACT 59.961 45.455 0.00 0.00 32.34 2.24
4661 4845 2.423577 ACGCCTCACATCCTTGTTTAC 58.576 47.619 0.00 0.00 32.34 2.01
4662 4846 2.851263 ACGCCTCACATCCTTGTTTA 57.149 45.000 0.00 0.00 32.34 2.01
4663 4847 2.851263 TACGCCTCACATCCTTGTTT 57.149 45.000 0.00 0.00 32.34 2.83
4664 4848 2.027192 ACATACGCCTCACATCCTTGTT 60.027 45.455 0.00 0.00 32.34 2.83
4665 4849 1.555075 ACATACGCCTCACATCCTTGT 59.445 47.619 0.00 0.00 36.15 3.16
4666 4850 1.935873 CACATACGCCTCACATCCTTG 59.064 52.381 0.00 0.00 0.00 3.61
4667 4851 1.743772 GCACATACGCCTCACATCCTT 60.744 52.381 0.00 0.00 0.00 3.36
4668 4852 0.179073 GCACATACGCCTCACATCCT 60.179 55.000 0.00 0.00 0.00 3.24
4669 4853 1.490693 CGCACATACGCCTCACATCC 61.491 60.000 0.00 0.00 0.00 3.51
4670 4854 0.806102 ACGCACATACGCCTCACATC 60.806 55.000 0.00 0.00 36.19 3.06
4671 4855 0.458260 TACGCACATACGCCTCACAT 59.542 50.000 0.00 0.00 36.19 3.21
4672 4856 0.244178 TTACGCACATACGCCTCACA 59.756 50.000 0.00 0.00 36.19 3.58
4673 4857 1.323534 CTTTACGCACATACGCCTCAC 59.676 52.381 0.00 0.00 36.19 3.51
4674 4858 1.067425 ACTTTACGCACATACGCCTCA 60.067 47.619 0.00 0.00 36.19 3.86
4675 4859 1.636988 ACTTTACGCACATACGCCTC 58.363 50.000 0.00 0.00 36.19 4.70
4676 4860 2.088950 AACTTTACGCACATACGCCT 57.911 45.000 0.00 0.00 36.19 5.52
4677 4861 4.033129 TGAATAACTTTACGCACATACGCC 59.967 41.667 0.00 0.00 36.19 5.68
4678 4862 5.133707 TGAATAACTTTACGCACATACGC 57.866 39.130 0.00 0.00 36.19 4.42
4679 4863 5.517411 TCCTGAATAACTTTACGCACATACG 59.483 40.000 0.00 0.00 39.50 3.06
4680 4864 6.897259 TCCTGAATAACTTTACGCACATAC 57.103 37.500 0.00 0.00 0.00 2.39
4681 4865 9.602568 TTTATCCTGAATAACTTTACGCACATA 57.397 29.630 0.00 0.00 29.39 2.29
4682 4866 8.500753 TTTATCCTGAATAACTTTACGCACAT 57.499 30.769 0.00 0.00 29.39 3.21
4683 4867 7.908827 TTTATCCTGAATAACTTTACGCACA 57.091 32.000 0.00 0.00 29.39 4.57
4686 4870 9.577003 CGTATTTTATCCTGAATAACTTTACGC 57.423 33.333 0.00 0.00 32.00 4.42
4694 4878 9.976255 CGTTTCAACGTATTTTATCCTGAATAA 57.024 29.630 3.85 0.00 46.63 1.40
4712 4896 8.549777 TTTTATTGTACATGTCACGTTTCAAC 57.450 30.769 0.00 0.00 0.00 3.18
4713 4897 8.613482 TCTTTTATTGTACATGTCACGTTTCAA 58.387 29.630 0.00 0.00 0.00 2.69
4714 4898 8.144155 TCTTTTATTGTACATGTCACGTTTCA 57.856 30.769 0.00 0.00 0.00 2.69
4747 4931 9.781425 ATGATACTATTCATCCTCTAAGACCAT 57.219 33.333 0.00 0.00 30.45 3.55
4748 4932 9.029368 CATGATACTATTCATCCTCTAAGACCA 57.971 37.037 0.00 0.00 34.09 4.02
4749 4933 9.030452 ACATGATACTATTCATCCTCTAAGACC 57.970 37.037 0.00 0.00 34.09 3.85
4750 4934 9.853555 CACATGATACTATTCATCCTCTAAGAC 57.146 37.037 0.00 0.00 34.09 3.01
4751 4935 9.593565 ACACATGATACTATTCATCCTCTAAGA 57.406 33.333 0.00 0.00 34.09 2.10
4752 4936 9.853555 GACACATGATACTATTCATCCTCTAAG 57.146 37.037 0.00 0.00 34.09 2.18
4753 4937 8.515414 CGACACATGATACTATTCATCCTCTAA 58.485 37.037 0.00 0.00 34.09 2.10
4754 4938 7.883311 TCGACACATGATACTATTCATCCTCTA 59.117 37.037 0.00 0.00 34.09 2.43
4755 4939 6.717084 TCGACACATGATACTATTCATCCTCT 59.283 38.462 0.00 0.00 34.09 3.69
4756 4940 6.914259 TCGACACATGATACTATTCATCCTC 58.086 40.000 0.00 0.00 34.09 3.71
4757 4941 6.901081 TCGACACATGATACTATTCATCCT 57.099 37.500 0.00 0.00 34.09 3.24
4758 4942 7.359598 GCTTTCGACACATGATACTATTCATCC 60.360 40.741 0.00 0.00 34.09 3.51
4759 4943 7.359598 GGCTTTCGACACATGATACTATTCATC 60.360 40.741 0.00 0.00 34.09 2.92
4760 4944 6.425114 GGCTTTCGACACATGATACTATTCAT 59.575 38.462 0.00 0.00 36.79 2.57
4761 4945 5.753438 GGCTTTCGACACATGATACTATTCA 59.247 40.000 0.00 0.00 0.00 2.57
4762 4946 5.177696 GGGCTTTCGACACATGATACTATTC 59.822 44.000 0.00 0.00 0.00 1.75
4763 4947 5.057149 GGGCTTTCGACACATGATACTATT 58.943 41.667 0.00 0.00 0.00 1.73
4764 4948 4.345257 AGGGCTTTCGACACATGATACTAT 59.655 41.667 0.00 0.00 0.00 2.12
4765 4949 3.704566 AGGGCTTTCGACACATGATACTA 59.295 43.478 0.00 0.00 0.00 1.82
4766 4950 2.501723 AGGGCTTTCGACACATGATACT 59.498 45.455 0.00 0.00 0.00 2.12
4767 4951 2.906354 AGGGCTTTCGACACATGATAC 58.094 47.619 0.00 0.00 0.00 2.24
4768 4952 3.958147 TCTAGGGCTTTCGACACATGATA 59.042 43.478 0.00 0.00 0.00 2.15
4769 4953 2.766263 TCTAGGGCTTTCGACACATGAT 59.234 45.455 0.00 0.00 0.00 2.45
4770 4954 2.176045 TCTAGGGCTTTCGACACATGA 58.824 47.619 0.00 0.00 0.00 3.07
4771 4955 2.672961 TCTAGGGCTTTCGACACATG 57.327 50.000 0.00 0.00 0.00 3.21
4772 4956 3.914426 AATCTAGGGCTTTCGACACAT 57.086 42.857 0.00 0.00 0.00 3.21
4773 4957 3.244422 ACAAATCTAGGGCTTTCGACACA 60.244 43.478 0.00 0.00 0.00 3.72
4774 4958 3.335579 ACAAATCTAGGGCTTTCGACAC 58.664 45.455 0.00 0.00 0.00 3.67
4775 4959 3.260884 AGACAAATCTAGGGCTTTCGACA 59.739 43.478 0.00 0.00 31.46 4.35
4776 4960 3.863041 AGACAAATCTAGGGCTTTCGAC 58.137 45.455 0.00 0.00 31.46 4.20
4777 4961 4.553330 AAGACAAATCTAGGGCTTTCGA 57.447 40.909 0.00 0.00 33.57 3.71
4778 4962 5.629079 AAAAGACAAATCTAGGGCTTTCG 57.371 39.130 0.00 0.00 33.57 3.46
4798 4982 5.957842 AGACGAAATAGGATGTGCAAAAA 57.042 34.783 0.00 0.00 0.00 1.94
4799 4983 5.471797 TCAAGACGAAATAGGATGTGCAAAA 59.528 36.000 0.00 0.00 0.00 2.44
4800 4984 5.000591 TCAAGACGAAATAGGATGTGCAAA 58.999 37.500 0.00 0.00 0.00 3.68
4801 4985 4.574892 TCAAGACGAAATAGGATGTGCAA 58.425 39.130 0.00 0.00 0.00 4.08
4802 4986 4.200838 TCAAGACGAAATAGGATGTGCA 57.799 40.909 0.00 0.00 0.00 4.57
4803 4987 5.545658 TTTCAAGACGAAATAGGATGTGC 57.454 39.130 0.00 0.00 38.72 4.57
4804 4988 8.970691 AAATTTTCAAGACGAAATAGGATGTG 57.029 30.769 0.00 0.00 43.12 3.21
4808 4992 8.225107 CGTGTAAATTTTCAAGACGAAATAGGA 58.775 33.333 5.07 0.00 43.12 2.94
4809 4993 7.007099 GCGTGTAAATTTTCAAGACGAAATAGG 59.993 37.037 13.37 0.00 43.12 2.57
4810 4994 7.744715 AGCGTGTAAATTTTCAAGACGAAATAG 59.255 33.333 13.37 0.00 43.12 1.73
4811 4995 7.577979 AGCGTGTAAATTTTCAAGACGAAATA 58.422 30.769 13.37 0.00 43.12 1.40
4812 4996 6.435428 AGCGTGTAAATTTTCAAGACGAAAT 58.565 32.000 13.37 0.00 43.12 2.17
4813 4997 5.812652 AGCGTGTAAATTTTCAAGACGAAA 58.187 33.333 13.37 0.00 41.95 3.46
4814 4998 5.412526 AGCGTGTAAATTTTCAAGACGAA 57.587 34.783 13.37 0.00 0.00 3.85
4815 4999 5.412526 AAGCGTGTAAATTTTCAAGACGA 57.587 34.783 13.37 0.00 0.00 4.20
4816 5000 7.953173 TGTATAAGCGTGTAAATTTTCAAGACG 59.047 33.333 13.37 9.23 0.00 4.18
4817 5001 9.047871 GTGTATAAGCGTGTAAATTTTCAAGAC 57.952 33.333 13.37 6.15 0.00 3.01
4818 5002 8.995220 AGTGTATAAGCGTGTAAATTTTCAAGA 58.005 29.630 13.37 0.00 0.00 3.02
4826 5010 9.688592 GAAGGTATAGTGTATAAGCGTGTAAAT 57.311 33.333 0.00 0.00 0.00 1.40
4827 5011 8.685427 TGAAGGTATAGTGTATAAGCGTGTAAA 58.315 33.333 0.00 0.00 0.00 2.01
4828 5012 8.224389 TGAAGGTATAGTGTATAAGCGTGTAA 57.776 34.615 0.00 0.00 0.00 2.41
4829 5013 7.806409 TGAAGGTATAGTGTATAAGCGTGTA 57.194 36.000 0.00 0.00 0.00 2.90
4830 5014 6.704289 TGAAGGTATAGTGTATAAGCGTGT 57.296 37.500 0.00 0.00 0.00 4.49
4831 5015 7.594714 AGATGAAGGTATAGTGTATAAGCGTG 58.405 38.462 0.00 0.00 0.00 5.34
4832 5016 7.762588 AGATGAAGGTATAGTGTATAAGCGT 57.237 36.000 0.00 0.00 0.00 5.07
4833 5017 9.938670 GATAGATGAAGGTATAGTGTATAAGCG 57.061 37.037 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.