Multiple sequence alignment - TraesCS1B01G400200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G400200 chr1B 100.000 4770 0 0 821 5590 630826502 630821733 0.000000e+00 8809.0
1 TraesCS1B01G400200 chr1B 100.000 360 0 0 1 360 630827322 630826963 0.000000e+00 665.0
2 TraesCS1B01G400200 chr1D 94.527 3965 170 24 821 4763 458882125 458878186 0.000000e+00 6076.0
3 TraesCS1B01G400200 chr1D 90.476 588 54 2 4808 5394 458878186 458877600 0.000000e+00 774.0
4 TraesCS1B01G400200 chr1D 84.153 183 13 9 5421 5590 458877615 458877436 4.480000e-36 163.0
5 TraesCS1B01G400200 chr1A 90.492 4102 245 48 1395 5443 551317143 551313134 0.000000e+00 5280.0
6 TraesCS1B01G400200 chr1A 87.692 585 35 22 821 1392 551317761 551317201 0.000000e+00 647.0
7 TraesCS1B01G400200 chr2A 80.876 251 26 14 841 1076 675204086 675203843 1.600000e-40 178.0
8 TraesCS1B01G400200 chr2B 79.752 242 31 7 848 1076 274990030 274990266 5.800000e-35 159.0
9 TraesCS1B01G400200 chr6B 79.012 243 33 10 848 1076 650676843 650677081 3.490000e-32 150.0
10 TraesCS1B01G400200 chr5A 78.455 246 30 10 841 1071 609688740 609688977 7.550000e-29 139.0
11 TraesCS1B01G400200 chr7B 90.909 66 4 2 841 906 412539572 412539635 2.770000e-13 87.9
12 TraesCS1B01G400200 chr3B 96.000 50 2 0 1026 1075 406828766 406828717 1.290000e-11 82.4
13 TraesCS1B01G400200 chr4B 90.000 50 4 1 857 906 546867161 546867113 4.680000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G400200 chr1B 630821733 630827322 5589 True 4737.000000 8809 100.000000 1 5590 2 chr1B.!!$R1 5589
1 TraesCS1B01G400200 chr1D 458877436 458882125 4689 True 2337.666667 6076 89.718667 821 5590 3 chr1D.!!$R1 4769
2 TraesCS1B01G400200 chr1A 551313134 551317761 4627 True 2963.500000 5280 89.092000 821 5443 2 chr1A.!!$R1 4622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 959 1.109323 GCGGCAGGCCCTAATTGATT 61.109 55.0 0.00 0.0 34.80 2.57 F
1547 1632 1.160137 ACGTCAGAAATTCCAGCAGC 58.840 50.0 0.00 0.0 0.00 5.25 F
1920 2027 0.837272 AAGGCTTGGCGCTTCCTATA 59.163 50.0 7.64 0.0 39.13 1.31 F
2708 2815 1.817357 TTGCTGCATCAGAACCTGAG 58.183 50.0 1.84 0.0 44.08 3.35 F
3939 4064 0.323302 TGCTGTACGGATCAAAGCCA 59.677 50.0 5.68 0.0 32.83 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2027 3.464828 ACTCATTATTGGTGGAGTCCCT 58.535 45.455 6.74 0.00 35.85 4.20 R
2973 3080 1.372087 CCTGCTTCAATGGCCTCGAC 61.372 60.000 3.32 0.00 0.00 4.20 R
3862 3987 2.089201 CTGATCCTGCAATTGCTCACA 58.911 47.619 29.37 19.45 42.66 3.58 R
4360 4485 0.735287 GTTCTCGCCTTCGGTACCAC 60.735 60.000 13.54 0.00 36.13 4.16 R
5363 5510 0.040058 AATGCAATGCAGACAGGGGA 59.960 50.000 14.98 0.00 43.65 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.514274 TGATTTCTAAATTGATTCGGCCC 57.486 39.130 0.00 0.00 0.00 5.80
23 24 5.200483 TGATTTCTAAATTGATTCGGCCCT 58.800 37.500 0.00 0.00 0.00 5.19
24 25 5.299279 TGATTTCTAAATTGATTCGGCCCTC 59.701 40.000 0.00 0.00 0.00 4.30
25 26 2.833794 TCTAAATTGATTCGGCCCTCG 58.166 47.619 0.00 0.00 40.90 4.63
34 35 3.635271 TCGGCCCTCGATTTTCAAA 57.365 47.368 0.00 0.00 43.74 2.69
35 36 2.122783 TCGGCCCTCGATTTTCAAAT 57.877 45.000 0.00 0.00 43.74 2.32
36 37 2.442413 TCGGCCCTCGATTTTCAAATT 58.558 42.857 0.00 0.00 43.74 1.82
37 38 2.163412 TCGGCCCTCGATTTTCAAATTG 59.837 45.455 0.00 0.00 43.74 2.32
38 39 2.094752 CGGCCCTCGATTTTCAAATTGT 60.095 45.455 0.00 0.00 42.43 2.71
39 40 3.613910 CGGCCCTCGATTTTCAAATTGTT 60.614 43.478 0.00 0.00 42.43 2.83
40 41 4.314961 GGCCCTCGATTTTCAAATTGTTT 58.685 39.130 0.00 0.00 32.68 2.83
41 42 4.754618 GGCCCTCGATTTTCAAATTGTTTT 59.245 37.500 0.00 0.00 32.68 2.43
42 43 5.107104 GGCCCTCGATTTTCAAATTGTTTTC 60.107 40.000 0.00 0.00 32.68 2.29
43 44 5.465056 GCCCTCGATTTTCAAATTGTTTTCA 59.535 36.000 0.00 0.00 32.68 2.69
44 45 6.147656 GCCCTCGATTTTCAAATTGTTTTCAT 59.852 34.615 0.00 0.00 32.68 2.57
45 46 7.330700 GCCCTCGATTTTCAAATTGTTTTCATA 59.669 33.333 0.00 0.00 32.68 2.15
46 47 9.369904 CCCTCGATTTTCAAATTGTTTTCATAT 57.630 29.630 0.00 0.00 32.68 1.78
57 58 9.890085 CAAATTGTTTTCATATTGATAGTTGCG 57.110 29.630 0.00 0.00 31.66 4.85
58 59 9.638239 AAATTGTTTTCATATTGATAGTTGCGT 57.362 25.926 0.00 0.00 0.00 5.24
60 61 9.716507 ATTGTTTTCATATTGATAGTTGCGTAC 57.283 29.630 0.00 0.00 0.00 3.67
61 62 7.395645 TGTTTTCATATTGATAGTTGCGTACG 58.604 34.615 11.84 11.84 0.00 3.67
62 63 7.275999 TGTTTTCATATTGATAGTTGCGTACGA 59.724 33.333 21.65 0.80 0.00 3.43
63 64 7.758613 TTTCATATTGATAGTTGCGTACGAA 57.241 32.000 21.65 5.28 0.00 3.85
64 65 6.742999 TCATATTGATAGTTGCGTACGAAC 57.257 37.500 21.65 18.92 0.00 3.95
78 79 2.905959 ACGAACGACGATGATGTACA 57.094 45.000 0.00 0.00 45.77 2.90
79 80 2.512885 ACGAACGACGATGATGTACAC 58.487 47.619 0.00 0.00 45.77 2.90
80 81 2.095617 ACGAACGACGATGATGTACACA 60.096 45.455 0.00 0.00 45.77 3.72
81 82 3.105937 CGAACGACGATGATGTACACAT 58.894 45.455 0.00 4.10 45.77 3.21
82 83 3.546271 CGAACGACGATGATGTACACATT 59.454 43.478 0.00 0.00 45.77 2.71
83 84 4.316446 CGAACGACGATGATGTACACATTC 60.316 45.833 0.00 0.00 45.77 2.67
84 85 3.444916 ACGACGATGATGTACACATTCC 58.555 45.455 0.00 0.00 36.57 3.01
85 86 2.794910 CGACGATGATGTACACATTCCC 59.205 50.000 0.00 0.00 36.57 3.97
86 87 3.736740 CGACGATGATGTACACATTCCCA 60.737 47.826 0.00 0.00 36.57 4.37
87 88 4.380531 GACGATGATGTACACATTCCCAT 58.619 43.478 0.00 0.00 36.57 4.00
88 89 5.538118 GACGATGATGTACACATTCCCATA 58.462 41.667 0.00 0.00 36.57 2.74
89 90 6.114187 ACGATGATGTACACATTCCCATAT 57.886 37.500 0.00 0.00 36.57 1.78
90 91 7.239763 ACGATGATGTACACATTCCCATATA 57.760 36.000 0.00 0.00 36.57 0.86
91 92 7.851228 ACGATGATGTACACATTCCCATATAT 58.149 34.615 0.00 0.00 36.57 0.86
92 93 8.321353 ACGATGATGTACACATTCCCATATATT 58.679 33.333 0.00 0.00 36.57 1.28
93 94 9.166173 CGATGATGTACACATTCCCATATATTT 57.834 33.333 0.00 0.00 36.57 1.40
99 100 9.958180 TGTACACATTCCCATATATTTCTATGG 57.042 33.333 0.00 3.59 45.26 2.74
100 101 9.959721 GTACACATTCCCATATATTTCTATGGT 57.040 33.333 8.80 0.00 44.53 3.55
101 102 8.868522 ACACATTCCCATATATTTCTATGGTG 57.131 34.615 8.80 0.00 44.53 4.17
102 103 8.448008 ACACATTCCCATATATTTCTATGGTGT 58.552 33.333 8.80 0.00 44.53 4.16
103 104 9.300681 CACATTCCCATATATTTCTATGGTGTT 57.699 33.333 8.80 0.00 44.53 3.32
107 108 9.802039 TTCCCATATATTTCTATGGTGTTAACC 57.198 33.333 2.48 0.00 44.53 2.85
120 121 5.696260 GGTGTTAACCGTATTAACCGTAC 57.304 43.478 13.87 7.88 36.51 3.67
121 122 4.264380 GGTGTTAACCGTATTAACCGTACG 59.736 45.833 8.69 8.69 43.26 3.67
122 123 5.090083 GTGTTAACCGTATTAACCGTACGA 58.910 41.667 18.76 0.00 45.69 3.43
123 124 5.569823 GTGTTAACCGTATTAACCGTACGAA 59.430 40.000 18.76 3.21 45.69 3.85
124 125 5.569823 TGTTAACCGTATTAACCGTACGAAC 59.430 40.000 18.76 8.64 45.69 3.95
125 126 3.840890 ACCGTATTAACCGTACGAACA 57.159 42.857 18.76 0.00 45.69 3.18
126 127 4.370364 ACCGTATTAACCGTACGAACAT 57.630 40.909 18.76 5.68 45.69 2.71
127 128 4.743493 ACCGTATTAACCGTACGAACATT 58.257 39.130 18.76 7.96 45.69 2.71
128 129 5.167845 ACCGTATTAACCGTACGAACATTT 58.832 37.500 18.76 4.22 45.69 2.32
129 130 5.288472 ACCGTATTAACCGTACGAACATTTC 59.712 40.000 18.76 1.56 45.69 2.17
130 131 5.516339 CCGTATTAACCGTACGAACATTTCT 59.484 40.000 18.76 0.00 45.69 2.52
131 132 6.690957 CCGTATTAACCGTACGAACATTTCTA 59.309 38.462 18.76 0.00 45.69 2.10
132 133 7.379529 CCGTATTAACCGTACGAACATTTCTAT 59.620 37.037 18.76 0.44 45.69 1.98
133 134 8.203346 CGTATTAACCGTACGAACATTTCTATG 58.797 37.037 18.76 0.00 45.69 2.23
134 135 6.890663 TTAACCGTACGAACATTTCTATGG 57.109 37.500 18.76 0.00 36.01 2.74
135 136 4.460948 ACCGTACGAACATTTCTATGGT 57.539 40.909 18.76 0.00 36.01 3.55
136 137 4.178540 ACCGTACGAACATTTCTATGGTG 58.821 43.478 18.76 0.00 34.40 4.17
137 138 4.178540 CCGTACGAACATTTCTATGGTGT 58.821 43.478 18.76 0.00 36.01 4.16
138 139 4.628333 CCGTACGAACATTTCTATGGTGTT 59.372 41.667 18.76 0.00 38.66 3.32
139 140 5.220340 CCGTACGAACATTTCTATGGTGTTC 60.220 44.000 18.76 7.26 45.00 3.18
142 143 4.946784 GAACATTTCTATGGTGTTCGCT 57.053 40.909 2.24 0.00 41.34 4.93
143 144 4.898370 GAACATTTCTATGGTGTTCGCTC 58.102 43.478 2.24 0.00 41.34 5.03
144 145 3.937814 ACATTTCTATGGTGTTCGCTCA 58.062 40.909 0.00 0.00 36.01 4.26
145 146 4.323417 ACATTTCTATGGTGTTCGCTCAA 58.677 39.130 0.00 0.00 36.01 3.02
146 147 4.393062 ACATTTCTATGGTGTTCGCTCAAG 59.607 41.667 0.00 0.00 36.01 3.02
147 148 3.953712 TTCTATGGTGTTCGCTCAAGA 57.046 42.857 0.00 0.00 0.00 3.02
148 149 3.953712 TCTATGGTGTTCGCTCAAGAA 57.046 42.857 0.00 0.00 0.00 2.52
149 150 4.265904 TCTATGGTGTTCGCTCAAGAAA 57.734 40.909 0.00 0.00 0.00 2.52
150 151 4.832248 TCTATGGTGTTCGCTCAAGAAAT 58.168 39.130 0.00 0.00 0.00 2.17
151 152 5.972935 TCTATGGTGTTCGCTCAAGAAATA 58.027 37.500 0.00 0.00 0.00 1.40
152 153 4.946784 ATGGTGTTCGCTCAAGAAATAC 57.053 40.909 0.00 0.00 0.00 1.89
153 154 3.071479 TGGTGTTCGCTCAAGAAATACC 58.929 45.455 0.00 0.00 38.78 2.73
154 155 3.071479 GGTGTTCGCTCAAGAAATACCA 58.929 45.455 8.55 0.00 38.47 3.25
155 156 3.689649 GGTGTTCGCTCAAGAAATACCAT 59.310 43.478 8.55 0.00 38.47 3.55
156 157 4.873827 GGTGTTCGCTCAAGAAATACCATA 59.126 41.667 8.55 0.00 38.47 2.74
157 158 5.527582 GGTGTTCGCTCAAGAAATACCATAT 59.472 40.000 8.55 0.00 38.47 1.78
158 159 6.704493 GGTGTTCGCTCAAGAAATACCATATA 59.296 38.462 8.55 0.00 38.47 0.86
159 160 7.387948 GGTGTTCGCTCAAGAAATACCATATAT 59.612 37.037 8.55 0.00 38.47 0.86
160 161 8.774586 GTGTTCGCTCAAGAAATACCATATATT 58.225 33.333 0.00 0.00 0.00 1.28
161 162 9.337396 TGTTCGCTCAAGAAATACCATATATTT 57.663 29.630 0.00 0.00 0.00 1.40
222 223 6.320551 TGAAAAACCGAATTTCAAAACGAC 57.679 33.333 7.47 0.00 42.19 4.34
223 224 5.862323 TGAAAAACCGAATTTCAAAACGACA 59.138 32.000 7.47 0.00 42.19 4.35
224 225 6.531948 TGAAAAACCGAATTTCAAAACGACAT 59.468 30.769 7.47 0.00 42.19 3.06
225 226 6.505039 AAAACCGAATTTCAAAACGACATC 57.495 33.333 0.00 0.00 0.00 3.06
226 227 4.155310 ACCGAATTTCAAAACGACATCC 57.845 40.909 0.00 0.00 0.00 3.51
227 228 3.818773 ACCGAATTTCAAAACGACATCCT 59.181 39.130 0.00 0.00 0.00 3.24
228 229 4.998672 ACCGAATTTCAAAACGACATCCTA 59.001 37.500 0.00 0.00 0.00 2.94
229 230 5.646360 ACCGAATTTCAAAACGACATCCTAT 59.354 36.000 0.00 0.00 0.00 2.57
230 231 6.183360 ACCGAATTTCAAAACGACATCCTATC 60.183 38.462 0.00 0.00 0.00 2.08
231 232 6.183360 CCGAATTTCAAAACGACATCCTATCA 60.183 38.462 0.00 0.00 0.00 2.15
232 233 7.240674 CGAATTTCAAAACGACATCCTATCAA 58.759 34.615 0.00 0.00 0.00 2.57
233 234 7.748683 CGAATTTCAAAACGACATCCTATCAAA 59.251 33.333 0.00 0.00 0.00 2.69
234 235 9.405587 GAATTTCAAAACGACATCCTATCAAAA 57.594 29.630 0.00 0.00 0.00 2.44
235 236 9.757227 AATTTCAAAACGACATCCTATCAAAAA 57.243 25.926 0.00 0.00 0.00 1.94
236 237 8.568732 TTTCAAAACGACATCCTATCAAAAAC 57.431 30.769 0.00 0.00 0.00 2.43
237 238 7.265647 TCAAAACGACATCCTATCAAAAACA 57.734 32.000 0.00 0.00 0.00 2.83
238 239 7.708051 TCAAAACGACATCCTATCAAAAACAA 58.292 30.769 0.00 0.00 0.00 2.83
239 240 7.860373 TCAAAACGACATCCTATCAAAAACAAG 59.140 33.333 0.00 0.00 0.00 3.16
240 241 7.504924 AAACGACATCCTATCAAAAACAAGA 57.495 32.000 0.00 0.00 0.00 3.02
241 242 6.481954 ACGACATCCTATCAAAAACAAGAC 57.518 37.500 0.00 0.00 0.00 3.01
242 243 5.995282 ACGACATCCTATCAAAAACAAGACA 59.005 36.000 0.00 0.00 0.00 3.41
243 244 6.073222 ACGACATCCTATCAAAAACAAGACAC 60.073 38.462 0.00 0.00 0.00 3.67
244 245 6.575162 ACATCCTATCAAAAACAAGACACC 57.425 37.500 0.00 0.00 0.00 4.16
245 246 6.068010 ACATCCTATCAAAAACAAGACACCA 58.932 36.000 0.00 0.00 0.00 4.17
246 247 6.721208 ACATCCTATCAAAAACAAGACACCAT 59.279 34.615 0.00 0.00 0.00 3.55
247 248 7.888021 ACATCCTATCAAAAACAAGACACCATA 59.112 33.333 0.00 0.00 0.00 2.74
248 249 8.739039 CATCCTATCAAAAACAAGACACCATAA 58.261 33.333 0.00 0.00 0.00 1.90
249 250 8.698973 TCCTATCAAAAACAAGACACCATAAA 57.301 30.769 0.00 0.00 0.00 1.40
250 251 8.792633 TCCTATCAAAAACAAGACACCATAAAG 58.207 33.333 0.00 0.00 0.00 1.85
251 252 8.792633 CCTATCAAAAACAAGACACCATAAAGA 58.207 33.333 0.00 0.00 0.00 2.52
252 253 9.612620 CTATCAAAAACAAGACACCATAAAGAC 57.387 33.333 0.00 0.00 0.00 3.01
253 254 6.801575 TCAAAAACAAGACACCATAAAGACC 58.198 36.000 0.00 0.00 0.00 3.85
254 255 6.378564 TCAAAAACAAGACACCATAAAGACCA 59.621 34.615 0.00 0.00 0.00 4.02
255 256 6.976934 AAAACAAGACACCATAAAGACCAT 57.023 33.333 0.00 0.00 0.00 3.55
256 257 8.356657 CAAAAACAAGACACCATAAAGACCATA 58.643 33.333 0.00 0.00 0.00 2.74
257 258 7.687941 AAACAAGACACCATAAAGACCATAG 57.312 36.000 0.00 0.00 0.00 2.23
258 259 6.620877 ACAAGACACCATAAAGACCATAGA 57.379 37.500 0.00 0.00 0.00 1.98
259 260 7.016153 ACAAGACACCATAAAGACCATAGAA 57.984 36.000 0.00 0.00 0.00 2.10
260 261 7.633789 ACAAGACACCATAAAGACCATAGAAT 58.366 34.615 0.00 0.00 0.00 2.40
261 262 8.109634 ACAAGACACCATAAAGACCATAGAATT 58.890 33.333 0.00 0.00 0.00 2.17
262 263 8.960591 CAAGACACCATAAAGACCATAGAATTT 58.039 33.333 0.00 0.00 0.00 1.82
263 264 8.511604 AGACACCATAAAGACCATAGAATTTG 57.488 34.615 0.00 0.00 0.00 2.32
264 265 7.067494 AGACACCATAAAGACCATAGAATTTGC 59.933 37.037 0.00 0.00 0.00 3.68
265 266 6.891908 ACACCATAAAGACCATAGAATTTGCT 59.108 34.615 0.00 0.00 0.00 3.91
266 267 7.397192 ACACCATAAAGACCATAGAATTTGCTT 59.603 33.333 0.00 0.00 0.00 3.91
267 268 7.703621 CACCATAAAGACCATAGAATTTGCTTG 59.296 37.037 0.00 0.00 0.00 4.01
268 269 7.147846 ACCATAAAGACCATAGAATTTGCTTGG 60.148 37.037 0.00 0.00 0.00 3.61
269 270 7.147846 CCATAAAGACCATAGAATTTGCTTGGT 60.148 37.037 0.00 0.00 43.19 3.67
270 271 6.670695 AAAGACCATAGAATTTGCTTGGTT 57.329 33.333 0.00 0.00 40.67 3.67
271 272 5.904362 AGACCATAGAATTTGCTTGGTTC 57.096 39.130 0.00 0.00 40.67 3.62
272 273 4.396166 AGACCATAGAATTTGCTTGGTTCG 59.604 41.667 0.00 0.00 40.67 3.95
273 274 4.331968 ACCATAGAATTTGCTTGGTTCGA 58.668 39.130 0.00 0.00 37.40 3.71
274 275 4.949856 ACCATAGAATTTGCTTGGTTCGAT 59.050 37.500 0.00 0.00 37.40 3.59
275 276 5.418840 ACCATAGAATTTGCTTGGTTCGATT 59.581 36.000 0.00 0.00 37.40 3.34
276 277 6.071391 ACCATAGAATTTGCTTGGTTCGATTT 60.071 34.615 0.00 0.00 37.40 2.17
277 278 7.122055 ACCATAGAATTTGCTTGGTTCGATTTA 59.878 33.333 0.00 0.00 37.40 1.40
278 279 8.137437 CCATAGAATTTGCTTGGTTCGATTTAT 58.863 33.333 0.00 0.00 0.00 1.40
279 280 9.520204 CATAGAATTTGCTTGGTTCGATTTATT 57.480 29.630 0.00 0.00 0.00 1.40
281 282 8.831715 AGAATTTGCTTGGTTCGATTTATTTT 57.168 26.923 0.00 0.00 0.00 1.82
282 283 9.271828 AGAATTTGCTTGGTTCGATTTATTTTT 57.728 25.926 0.00 0.00 0.00 1.94
283 284 9.316859 GAATTTGCTTGGTTCGATTTATTTTTG 57.683 29.630 0.00 0.00 0.00 2.44
284 285 6.777526 TTGCTTGGTTCGATTTATTTTTGG 57.222 33.333 0.00 0.00 0.00 3.28
285 286 4.688413 TGCTTGGTTCGATTTATTTTTGGC 59.312 37.500 0.00 0.00 0.00 4.52
286 287 4.688413 GCTTGGTTCGATTTATTTTTGGCA 59.312 37.500 0.00 0.00 0.00 4.92
287 288 5.351189 GCTTGGTTCGATTTATTTTTGGCAT 59.649 36.000 0.00 0.00 0.00 4.40
288 289 6.672836 GCTTGGTTCGATTTATTTTTGGCATG 60.673 38.462 0.00 0.00 0.00 4.06
289 290 5.174395 TGGTTCGATTTATTTTTGGCATGG 58.826 37.500 0.00 0.00 0.00 3.66
290 291 5.175127 GGTTCGATTTATTTTTGGCATGGT 58.825 37.500 0.00 0.00 0.00 3.55
291 292 5.641636 GGTTCGATTTATTTTTGGCATGGTT 59.358 36.000 0.00 0.00 0.00 3.67
292 293 6.148645 GGTTCGATTTATTTTTGGCATGGTTT 59.851 34.615 0.00 0.00 0.00 3.27
293 294 7.308288 GGTTCGATTTATTTTTGGCATGGTTTT 60.308 33.333 0.00 0.00 0.00 2.43
294 295 7.736447 TCGATTTATTTTTGGCATGGTTTTT 57.264 28.000 0.00 0.00 0.00 1.94
295 296 7.579726 TCGATTTATTTTTGGCATGGTTTTTG 58.420 30.769 0.00 0.00 0.00 2.44
296 297 7.442364 TCGATTTATTTTTGGCATGGTTTTTGA 59.558 29.630 0.00 0.00 0.00 2.69
297 298 7.745594 CGATTTATTTTTGGCATGGTTTTTGAG 59.254 33.333 0.00 0.00 0.00 3.02
298 299 4.834357 ATTTTTGGCATGGTTTTTGAGC 57.166 36.364 0.00 0.00 0.00 4.26
299 300 3.557228 TTTTGGCATGGTTTTTGAGCT 57.443 38.095 0.00 0.00 0.00 4.09
300 301 2.818130 TTGGCATGGTTTTTGAGCTC 57.182 45.000 6.82 6.82 0.00 4.09
301 302 1.702182 TGGCATGGTTTTTGAGCTCA 58.298 45.000 13.74 13.74 0.00 4.26
302 303 1.614903 TGGCATGGTTTTTGAGCTCAG 59.385 47.619 17.43 3.66 0.00 3.35
303 304 1.615392 GGCATGGTTTTTGAGCTCAGT 59.385 47.619 17.43 0.00 0.00 3.41
304 305 2.036346 GGCATGGTTTTTGAGCTCAGTT 59.964 45.455 17.43 0.00 0.00 3.16
305 306 3.493176 GGCATGGTTTTTGAGCTCAGTTT 60.493 43.478 17.43 0.00 0.00 2.66
306 307 3.737774 GCATGGTTTTTGAGCTCAGTTTC 59.262 43.478 17.43 9.18 0.00 2.78
307 308 4.737352 GCATGGTTTTTGAGCTCAGTTTCA 60.737 41.667 17.43 12.86 0.00 2.69
308 309 5.350633 CATGGTTTTTGAGCTCAGTTTCAA 58.649 37.500 17.43 5.01 0.00 2.69
309 310 5.398603 TGGTTTTTGAGCTCAGTTTCAAA 57.601 34.783 17.43 11.28 40.46 2.69
310 311 5.788450 TGGTTTTTGAGCTCAGTTTCAAAA 58.212 33.333 17.43 16.47 46.06 2.44
311 312 6.405538 TGGTTTTTGAGCTCAGTTTCAAAAT 58.594 32.000 20.44 0.00 46.59 1.82
312 313 6.313411 TGGTTTTTGAGCTCAGTTTCAAAATG 59.687 34.615 20.44 0.00 46.59 2.32
313 314 6.313658 GGTTTTTGAGCTCAGTTTCAAAATGT 59.686 34.615 20.44 0.00 46.59 2.71
314 315 7.491048 GGTTTTTGAGCTCAGTTTCAAAATGTA 59.509 33.333 20.44 0.00 46.59 2.29
315 316 7.985634 TTTTGAGCTCAGTTTCAAAATGTAC 57.014 32.000 17.43 0.00 44.12 2.90
316 317 6.691754 TTGAGCTCAGTTTCAAAATGTACA 57.308 33.333 17.43 0.00 30.84 2.90
317 318 6.304356 TGAGCTCAGTTTCAAAATGTACAG 57.696 37.500 13.74 0.00 0.00 2.74
318 319 6.054941 TGAGCTCAGTTTCAAAATGTACAGA 58.945 36.000 13.74 0.00 0.00 3.41
319 320 6.203530 TGAGCTCAGTTTCAAAATGTACAGAG 59.796 38.462 13.74 0.00 0.00 3.35
320 321 6.058183 AGCTCAGTTTCAAAATGTACAGAGT 58.942 36.000 0.33 0.00 0.00 3.24
321 322 6.017605 AGCTCAGTTTCAAAATGTACAGAGTG 60.018 38.462 0.33 0.00 0.00 3.51
322 323 6.017934 GCTCAGTTTCAAAATGTACAGAGTGA 60.018 38.462 0.33 1.36 0.00 3.41
323 324 7.482654 TCAGTTTCAAAATGTACAGAGTGAG 57.517 36.000 0.33 0.00 0.00 3.51
324 325 7.047891 TCAGTTTCAAAATGTACAGAGTGAGT 58.952 34.615 0.33 0.00 0.00 3.41
325 326 7.011389 TCAGTTTCAAAATGTACAGAGTGAGTG 59.989 37.037 0.33 4.14 0.00 3.51
326 327 7.011389 CAGTTTCAAAATGTACAGAGTGAGTGA 59.989 37.037 0.33 0.00 0.00 3.41
327 328 7.716998 AGTTTCAAAATGTACAGAGTGAGTGAT 59.283 33.333 0.33 0.00 0.00 3.06
328 329 8.345565 GTTTCAAAATGTACAGAGTGAGTGATT 58.654 33.333 0.33 0.00 0.00 2.57
329 330 8.450578 TTCAAAATGTACAGAGTGAGTGATTT 57.549 30.769 0.33 0.00 0.00 2.17
330 331 7.864686 TCAAAATGTACAGAGTGAGTGATTTG 58.135 34.615 0.33 0.00 0.00 2.32
331 332 7.714813 TCAAAATGTACAGAGTGAGTGATTTGA 59.285 33.333 0.33 0.00 0.00 2.69
332 333 7.664082 AAATGTACAGAGTGAGTGATTTGAG 57.336 36.000 0.33 0.00 0.00 3.02
333 334 6.596309 ATGTACAGAGTGAGTGATTTGAGA 57.404 37.500 0.33 0.00 0.00 3.27
334 335 6.405278 TGTACAGAGTGAGTGATTTGAGAA 57.595 37.500 0.00 0.00 0.00 2.87
335 336 6.997655 TGTACAGAGTGAGTGATTTGAGAAT 58.002 36.000 0.00 0.00 0.00 2.40
336 337 6.870439 TGTACAGAGTGAGTGATTTGAGAATG 59.130 38.462 0.00 0.00 0.00 2.67
337 338 6.106648 ACAGAGTGAGTGATTTGAGAATGA 57.893 37.500 0.00 0.00 0.00 2.57
338 339 6.164876 ACAGAGTGAGTGATTTGAGAATGAG 58.835 40.000 0.00 0.00 0.00 2.90
339 340 6.014755 ACAGAGTGAGTGATTTGAGAATGAGA 60.015 38.462 0.00 0.00 0.00 3.27
340 341 6.872547 CAGAGTGAGTGATTTGAGAATGAGAA 59.127 38.462 0.00 0.00 0.00 2.87
341 342 7.549842 CAGAGTGAGTGATTTGAGAATGAGAAT 59.450 37.037 0.00 0.00 0.00 2.40
342 343 7.549842 AGAGTGAGTGATTTGAGAATGAGAATG 59.450 37.037 0.00 0.00 0.00 2.67
343 344 6.093771 AGTGAGTGATTTGAGAATGAGAATGC 59.906 38.462 0.00 0.00 0.00 3.56
344 345 5.941647 TGAGTGATTTGAGAATGAGAATGCA 59.058 36.000 0.00 0.00 0.00 3.96
345 346 6.602009 TGAGTGATTTGAGAATGAGAATGCAT 59.398 34.615 0.00 0.00 0.00 3.96
346 347 7.771826 TGAGTGATTTGAGAATGAGAATGCATA 59.228 33.333 0.00 0.00 0.00 3.14
347 348 8.155821 AGTGATTTGAGAATGAGAATGCATAG 57.844 34.615 0.00 0.00 0.00 2.23
348 349 7.991460 AGTGATTTGAGAATGAGAATGCATAGA 59.009 33.333 0.00 0.00 0.00 1.98
349 350 8.283992 GTGATTTGAGAATGAGAATGCATAGAG 58.716 37.037 0.00 0.00 0.00 2.43
350 351 7.991460 TGATTTGAGAATGAGAATGCATAGAGT 59.009 33.333 0.00 0.00 0.00 3.24
351 352 7.549615 TTTGAGAATGAGAATGCATAGAGTG 57.450 36.000 0.00 0.00 0.00 3.51
352 353 5.608449 TGAGAATGAGAATGCATAGAGTGG 58.392 41.667 0.00 0.00 0.00 4.00
353 354 4.970711 AGAATGAGAATGCATAGAGTGGG 58.029 43.478 0.00 0.00 0.00 4.61
354 355 3.784511 ATGAGAATGCATAGAGTGGGG 57.215 47.619 0.00 0.00 0.00 4.96
355 356 2.481441 TGAGAATGCATAGAGTGGGGT 58.519 47.619 0.00 0.00 0.00 4.95
356 357 2.846206 TGAGAATGCATAGAGTGGGGTT 59.154 45.455 0.00 0.00 0.00 4.11
357 358 3.266772 TGAGAATGCATAGAGTGGGGTTT 59.733 43.478 0.00 0.00 0.00 3.27
358 359 4.263905 TGAGAATGCATAGAGTGGGGTTTT 60.264 41.667 0.00 0.00 0.00 2.43
359 360 4.677182 AGAATGCATAGAGTGGGGTTTTT 58.323 39.130 0.00 0.00 0.00 1.94
907 916 1.840737 ACTGGTGAGTGAGCTCGTAT 58.159 50.000 9.64 0.00 44.48 3.06
908 917 1.746220 ACTGGTGAGTGAGCTCGTATC 59.254 52.381 9.64 7.43 44.48 2.24
909 918 1.745653 CTGGTGAGTGAGCTCGTATCA 59.254 52.381 9.64 10.05 44.48 2.15
946 959 1.109323 GCGGCAGGCCCTAATTGATT 61.109 55.000 0.00 0.00 34.80 2.57
965 978 2.444140 CCCTCGATTCGGTCCCCT 60.444 66.667 6.18 0.00 0.00 4.79
966 979 2.499827 CCCTCGATTCGGTCCCCTC 61.500 68.421 6.18 0.00 0.00 4.30
967 980 2.499827 CCTCGATTCGGTCCCCTCC 61.500 68.421 6.18 0.00 0.00 4.30
1164 1194 2.439338 TTGGCTGGTTGCGTGTGT 60.439 55.556 0.00 0.00 44.05 3.72
1165 1195 2.769539 TTGGCTGGTTGCGTGTGTG 61.770 57.895 0.00 0.00 44.05 3.82
1451 1536 4.013728 TGTAAATGAATTTCGGGTCCCTG 58.986 43.478 6.29 0.00 0.00 4.45
1470 1555 4.264253 CCTGCAATTCTGTTATCCAGTCA 58.736 43.478 0.00 0.00 42.19 3.41
1477 1562 6.723298 ATTCTGTTATCCAGTCAGTCCTAG 57.277 41.667 0.00 0.00 42.19 3.02
1478 1563 3.954904 TCTGTTATCCAGTCAGTCCTAGC 59.045 47.826 0.00 0.00 42.19 3.42
1499 1584 8.475639 CCTAGCTGTGTTAGGAACTTAATTCTA 58.524 37.037 0.00 0.00 38.52 2.10
1503 1588 7.534085 TGTGTTAGGAACTTAATTCTATGCG 57.466 36.000 0.00 0.00 41.75 4.73
1504 1589 7.101054 TGTGTTAGGAACTTAATTCTATGCGT 58.899 34.615 0.00 0.00 41.75 5.24
1505 1590 8.252417 TGTGTTAGGAACTTAATTCTATGCGTA 58.748 33.333 0.00 0.00 41.75 4.42
1506 1591 8.538039 GTGTTAGGAACTTAATTCTATGCGTAC 58.462 37.037 0.00 0.00 41.75 3.67
1507 1592 7.707893 TGTTAGGAACTTAATTCTATGCGTACC 59.292 37.037 0.00 0.00 41.75 3.34
1508 1593 6.229936 AGGAACTTAATTCTATGCGTACCA 57.770 37.500 0.00 0.00 37.48 3.25
1509 1594 6.047231 AGGAACTTAATTCTATGCGTACCAC 58.953 40.000 0.00 0.00 37.48 4.16
1525 1610 1.209128 CCACGCAGGTTAGCTATTCG 58.791 55.000 0.00 0.00 0.00 3.34
1526 1611 1.209128 CACGCAGGTTAGCTATTCGG 58.791 55.000 0.00 0.00 0.00 4.30
1545 1630 2.695359 GGTACGTCAGAAATTCCAGCA 58.305 47.619 0.00 0.00 0.00 4.41
1546 1631 2.673368 GGTACGTCAGAAATTCCAGCAG 59.327 50.000 0.00 0.00 0.00 4.24
1547 1632 1.160137 ACGTCAGAAATTCCAGCAGC 58.840 50.000 0.00 0.00 0.00 5.25
1548 1633 1.271054 ACGTCAGAAATTCCAGCAGCT 60.271 47.619 0.00 0.00 0.00 4.24
1550 1635 3.201290 CGTCAGAAATTCCAGCAGCTAT 58.799 45.455 0.00 0.00 0.00 2.97
1551 1636 3.624861 CGTCAGAAATTCCAGCAGCTATT 59.375 43.478 0.00 0.00 0.00 1.73
1552 1637 4.811024 CGTCAGAAATTCCAGCAGCTATTA 59.189 41.667 0.00 0.00 0.00 0.98
1557 1653 7.066284 TCAGAAATTCCAGCAGCTATTAGTTTC 59.934 37.037 0.00 2.97 0.00 2.78
1579 1675 9.736023 GTTTCTGTTACTTCTGTCATTTCATTT 57.264 29.630 0.00 0.00 0.00 2.32
1607 1703 9.910267 TCTGATGAGAAATCAGGATATTCAAAA 57.090 29.630 13.79 0.00 44.15 2.44
1635 1731 8.574251 AAACCCCCTTTCAAATAAATAAATGC 57.426 30.769 0.00 0.00 0.00 3.56
1637 1733 7.109501 ACCCCCTTTCAAATAAATAAATGCAC 58.890 34.615 0.00 0.00 0.00 4.57
1638 1734 6.257630 CCCCCTTTCAAATAAATAAATGCACG 59.742 38.462 0.00 0.00 0.00 5.34
1681 1788 2.423926 AGTATGCCTAATCGTCAGCG 57.576 50.000 0.00 0.00 39.92 5.18
1715 1822 5.680619 TGATGGGTTCATAATGGTAGTGAC 58.319 41.667 0.00 0.00 32.98 3.67
1716 1823 5.063880 GATGGGTTCATAATGGTAGTGACC 58.936 45.833 0.00 0.00 38.90 4.02
1743 1850 3.119245 CCAATCCATGCAGAGGAAAACTG 60.119 47.826 13.98 9.27 38.93 3.16
1794 1901 8.058235 TCATACCATTTTGATTCCATCCTAACA 58.942 33.333 0.00 0.00 0.00 2.41
1801 1908 3.523157 TGATTCCATCCTAACAAGGCAGA 59.477 43.478 0.00 0.00 0.00 4.26
1807 1914 3.057969 TCCTAACAAGGCAGATGTGTG 57.942 47.619 0.00 0.00 0.00 3.82
1857 1964 9.683069 AAAACACAGTTTCAGAATAATGATGTC 57.317 29.630 0.00 0.00 0.00 3.06
1860 1967 5.643348 ACAGTTTCAGAATAATGATGTCGCA 59.357 36.000 0.00 0.00 0.00 5.10
1920 2027 0.837272 AAGGCTTGGCGCTTCCTATA 59.163 50.000 7.64 0.00 39.13 1.31
1947 2054 7.996644 GGGACTCCACCAATAATGAGTATTTTA 59.003 37.037 0.00 0.00 38.15 1.52
1948 2055 9.574516 GGACTCCACCAATAATGAGTATTTTAT 57.425 33.333 0.00 0.00 38.15 1.40
2171 2278 8.627233 ATCAATCTGATCTATCCTGCAGAAGGT 61.627 40.741 17.39 5.67 38.93 3.50
2589 2696 2.420269 GGCCCTTAACTCTGTTAGCTCC 60.420 54.545 0.00 0.00 0.00 4.70
2708 2815 1.817357 TTGCTGCATCAGAACCTGAG 58.183 50.000 1.84 0.00 44.08 3.35
2744 2851 3.025978 TGCCCTTTCCATTGATGTCATC 58.974 45.455 5.83 5.83 0.00 2.92
2780 2887 3.229276 TGTGTTGTTTGCAGAACTTGG 57.771 42.857 11.34 0.00 0.00 3.61
2942 3049 4.160635 CGACGGGCGCATTTGGTC 62.161 66.667 10.83 7.57 0.00 4.02
2973 3080 7.085746 TGAACATTATGCAACTCAGTTCAATG 58.914 34.615 17.17 0.00 40.33 2.82
3012 3119 9.740710 AAGCAGGTATGTTTCTAGTTTTCTAAT 57.259 29.630 0.00 0.00 31.45 1.73
3352 3477 8.415950 ACTTGATCCAGGTCTATATCAACTAG 57.584 38.462 0.00 0.00 34.34 2.57
3415 3540 2.206322 TATAATGCTGGGAGGGGTGT 57.794 50.000 0.00 0.00 0.00 4.16
3514 3639 9.128107 ACATACGATTTTCTGCTTGTTATTTTG 57.872 29.630 0.00 0.00 0.00 2.44
3525 3650 7.598493 TCTGCTTGTTATTTTGAAAATACTGCC 59.402 33.333 9.70 0.78 0.00 4.85
3529 3654 6.451393 TGTTATTTTGAAAATACTGCCGCTT 58.549 32.000 9.70 0.00 0.00 4.68
3549 3674 5.456497 CGCTTATCTGTTTATTGTTGCATGG 59.544 40.000 0.00 0.00 0.00 3.66
3628 3753 3.062234 GCACTGAGTTTACTTACGATGGC 59.938 47.826 0.00 0.00 0.00 4.40
3645 3770 4.264614 CGATGGCGTATGTATCCGTAATTC 59.735 45.833 0.00 0.00 0.00 2.17
3650 3775 4.986659 GCGTATGTATCCGTAATTCCACTT 59.013 41.667 0.00 0.00 0.00 3.16
3811 3936 4.744631 GCAAAGGGTATTCATATTTTGCCG 59.255 41.667 8.17 0.00 42.56 5.69
3815 3940 4.274950 AGGGTATTCATATTTTGCCGAACG 59.725 41.667 0.00 0.00 0.00 3.95
3819 3944 7.188157 GGTATTCATATTTTGCCGAACGTTTA 58.812 34.615 0.46 0.00 0.00 2.01
3820 3945 7.858879 GGTATTCATATTTTGCCGAACGTTTAT 59.141 33.333 0.46 0.00 0.00 1.40
3821 3946 9.228636 GTATTCATATTTTGCCGAACGTTTATT 57.771 29.630 0.46 0.00 0.00 1.40
3862 3987 2.319844 TCTGCGGATGGTATCTGATGT 58.680 47.619 0.00 0.00 37.90 3.06
3869 3994 3.181462 GGATGGTATCTGATGTGTGAGCA 60.181 47.826 0.00 0.00 0.00 4.26
3891 4016 2.687700 TGCAGGATCAGAAGAAGCTC 57.312 50.000 0.00 0.00 0.00 4.09
3939 4064 0.323302 TGCTGTACGGATCAAAGCCA 59.677 50.000 5.68 0.00 32.83 4.75
3963 4088 3.045601 CCTTCATCAAGGTCGAACAGT 57.954 47.619 1.87 0.00 44.11 3.55
3973 4098 1.608283 GGTCGAACAGTGGGAAGAAGG 60.608 57.143 0.00 0.00 0.00 3.46
3985 4110 3.720002 TGGGAAGAAGGTTACCAGAAACT 59.280 43.478 3.51 0.00 0.00 2.66
4155 4280 4.136796 AGCTGATGCAGTTGTTCAGTTTA 58.863 39.130 14.13 0.00 42.74 2.01
4165 4290 7.642194 TGCAGTTGTTCAGTTTATTTACTTTCG 59.358 33.333 0.00 0.00 0.00 3.46
4449 4574 3.209410 GTGACCTCTCCTATGCAAATGG 58.791 50.000 0.00 0.00 0.00 3.16
4476 4601 2.125229 CTGCTCTGACTGCCGCAT 60.125 61.111 0.00 0.00 0.00 4.73
4478 4603 3.200593 GCTCTGACTGCCGCATGG 61.201 66.667 0.00 0.00 38.77 3.66
4547 4672 1.402613 GAGAGCACCGAGTACTCCTTC 59.597 57.143 17.23 7.74 0.00 3.46
4562 4687 1.226831 CTTCGAAGAGAGGCGCCTC 60.227 63.158 43.08 43.08 43.03 4.70
4614 4739 3.595758 GGAATGCCGGGGAATGCG 61.596 66.667 2.18 0.00 0.00 4.73
4628 4753 0.462047 AATGCGGTGTAGGTAGCTGC 60.462 55.000 4.27 3.46 0.00 5.25
4681 4806 1.343142 TGTGAGAGACGCTTGGCTAAA 59.657 47.619 0.00 0.00 0.00 1.85
4713 4838 5.297776 AGGCACATATTTTTCTGATCGAAGG 59.702 40.000 0.00 0.00 32.21 3.46
4736 4861 4.576053 GCACAGCCATATGTCATGTTTCTA 59.424 41.667 1.24 0.00 0.00 2.10
4737 4862 5.240183 GCACAGCCATATGTCATGTTTCTAT 59.760 40.000 1.24 0.00 0.00 1.98
4738 4863 6.567321 GCACAGCCATATGTCATGTTTCTATC 60.567 42.308 1.24 0.00 0.00 2.08
4739 4864 6.484308 CACAGCCATATGTCATGTTTCTATCA 59.516 38.462 1.24 0.00 0.00 2.15
4743 4868 7.228108 AGCCATATGTCATGTTTCTATCAGTTG 59.772 37.037 1.24 0.00 0.00 3.16
4771 4896 4.708726 AACAGATTTACATTGCTGCCTC 57.291 40.909 0.00 0.00 31.74 4.70
4772 4897 3.019564 ACAGATTTACATTGCTGCCTCC 58.980 45.455 0.00 0.00 31.74 4.30
4832 4957 3.738282 GCGGAGATGCTTAACTCTATGTG 59.262 47.826 0.00 0.00 34.11 3.21
4865 4990 8.574251 TGCTTGTGATATTAAACCTACACAAT 57.426 30.769 0.00 0.00 43.65 2.71
4882 5007 8.458052 CCTACACAATTGAACATAACATTGCTA 58.542 33.333 13.59 0.00 0.00 3.49
4908 5033 4.955450 AGCATTACATTTTCCATGTAGCCA 59.045 37.500 0.00 0.00 36.09 4.75
4978 5103 8.630054 AATGCAGAAACCAGTATGTACTAAAA 57.370 30.769 0.00 0.00 34.13 1.52
5015 5140 8.296713 TCCTGCAGACTAATTTGTAAAATGAAC 58.703 33.333 17.39 0.00 0.00 3.18
5041 5166 0.678950 CCAACCATTGAACCCCACAC 59.321 55.000 0.00 0.00 0.00 3.82
5046 5171 1.901464 ATTGAACCCCACACGCACC 60.901 57.895 0.00 0.00 0.00 5.01
5086 5211 1.602191 CAATCGCGCCAAGTTACAAC 58.398 50.000 0.00 0.00 0.00 3.32
5131 5257 6.097839 TCCTCAAGTTAGAGCATACGGTTTAT 59.902 38.462 0.00 0.00 34.26 1.40
5143 5269 2.454464 GGTTTATGCCGCGCGTGTA 61.454 57.895 29.95 19.52 0.00 2.90
5190 5316 3.576078 ACAAACAGGTGGAGTGATGAA 57.424 42.857 0.00 0.00 0.00 2.57
5193 5319 2.680312 ACAGGTGGAGTGATGAATCG 57.320 50.000 0.00 0.00 0.00 3.34
5230 5356 6.806120 CATGCAAACTGACATGAACATATG 57.194 37.500 0.00 0.00 45.23 1.78
5243 5369 8.750515 ACATGAACATATGGACAATAATGTGA 57.249 30.769 7.80 0.00 40.74 3.58
5248 5374 8.985315 AACATATGGACAATAATGTGATCACT 57.015 30.769 25.55 9.97 40.74 3.41
5293 5440 2.290323 CCAGAAGGGAAGTGTAACAGGG 60.290 54.545 0.00 0.00 38.16 4.45
5308 5455 2.060980 AGGGTCGAAGCAGCTAGGG 61.061 63.158 0.00 0.00 0.00 3.53
5324 5471 5.300034 CAGCTAGGGTATCAATTGATTGCAA 59.700 40.000 25.26 0.00 37.68 4.08
5387 5534 2.602878 CTGTCTGCATTGCATTCAACC 58.397 47.619 12.53 0.00 38.13 3.77
5389 5536 1.068333 GTCTGCATTGCATTCAACCGT 60.068 47.619 12.53 0.00 38.13 4.83
5390 5537 1.068402 TCTGCATTGCATTCAACCGTG 60.068 47.619 12.53 0.00 38.13 4.94
5391 5538 0.666880 TGCATTGCATTCAACCGTGC 60.667 50.000 7.38 0.00 41.61 5.34
5393 5540 1.936203 GCATTGCATTCAACCGTGCTT 60.936 47.619 3.15 0.00 41.78 3.91
5394 5541 2.406130 CATTGCATTCAACCGTGCTTT 58.594 42.857 0.00 0.00 41.78 3.51
5397 5544 0.388520 GCATTCAACCGTGCTTTCCC 60.389 55.000 0.00 0.00 38.30 3.97
5398 5545 0.243636 CATTCAACCGTGCTTTCCCC 59.756 55.000 0.00 0.00 0.00 4.81
5399 5546 1.241315 ATTCAACCGTGCTTTCCCCG 61.241 55.000 0.00 0.00 0.00 5.73
5400 5547 3.361977 CAACCGTGCTTTCCCCGG 61.362 66.667 0.00 0.00 46.93 5.73
5404 5551 2.983592 CGTGCTTTCCCCGGCTTT 60.984 61.111 0.00 0.00 0.00 3.51
5408 5556 1.289066 GCTTTCCCCGGCTTTTCAC 59.711 57.895 0.00 0.00 0.00 3.18
5423 5571 4.549458 CTTTTCACCGAAATTGACAGCAT 58.451 39.130 0.00 0.00 31.34 3.79
5429 5577 3.244976 CCGAAATTGACAGCATTCAACC 58.755 45.455 2.38 0.00 38.31 3.77
5430 5578 3.305267 CCGAAATTGACAGCATTCAACCA 60.305 43.478 2.38 0.00 38.31 3.67
5448 5596 1.404047 CCATGCTTAAAAACAGGGGCG 60.404 52.381 0.00 0.00 34.14 6.13
5457 5605 2.346284 AAACAGGGGCGCACCTACAA 62.346 55.000 34.99 0.00 39.34 2.41
5494 5642 0.042731 TCCGACCTTCCTCTCCCATT 59.957 55.000 0.00 0.00 0.00 3.16
5521 5669 0.538057 CCAGCCAAGGAGAACAGCAA 60.538 55.000 0.00 0.00 0.00 3.91
5523 5671 1.682854 CAGCCAAGGAGAACAGCAAAA 59.317 47.619 0.00 0.00 0.00 2.44
5528 5676 2.426738 CAAGGAGAACAGCAAAACACCA 59.573 45.455 0.00 0.00 0.00 4.17
5529 5677 2.301346 AGGAGAACAGCAAAACACCAG 58.699 47.619 0.00 0.00 0.00 4.00
5530 5678 1.269257 GGAGAACAGCAAAACACCAGC 60.269 52.381 0.00 0.00 0.00 4.85
5531 5679 1.678101 GAGAACAGCAAAACACCAGCT 59.322 47.619 0.00 0.00 39.63 4.24
5532 5680 2.099756 GAGAACAGCAAAACACCAGCTT 59.900 45.455 0.00 0.00 36.26 3.74
5534 5682 3.055891 AGAACAGCAAAACACCAGCTTTT 60.056 39.130 0.00 0.00 36.26 2.27
5547 5705 5.774690 ACACCAGCTTTTTGGATCAAGATTA 59.225 36.000 0.00 0.00 40.87 1.75
5548 5706 6.095377 CACCAGCTTTTTGGATCAAGATTAC 58.905 40.000 0.00 0.00 40.87 1.89
5549 5707 5.774690 ACCAGCTTTTTGGATCAAGATTACA 59.225 36.000 0.00 0.00 40.87 2.41
5550 5708 6.438425 ACCAGCTTTTTGGATCAAGATTACAT 59.562 34.615 0.00 0.00 40.87 2.29
5551 5709 6.755141 CCAGCTTTTTGGATCAAGATTACATG 59.245 38.462 0.00 0.00 40.87 3.21
5552 5710 7.318141 CAGCTTTTTGGATCAAGATTACATGT 58.682 34.615 2.69 2.69 0.00 3.21
5553 5711 7.816031 CAGCTTTTTGGATCAAGATTACATGTT 59.184 33.333 2.30 0.00 0.00 2.71
5554 5712 8.031277 AGCTTTTTGGATCAAGATTACATGTTC 58.969 33.333 2.30 0.00 0.00 3.18
5557 5715 9.912634 TTTTTGGATCAAGATTACATGTTCTTC 57.087 29.630 2.30 0.00 29.85 2.87
5576 5734 7.013274 TGTTCTTCTTGATAACCACTGGAAAAG 59.987 37.037 0.71 0.00 0.00 2.27
5577 5735 6.003950 TCTTCTTGATAACCACTGGAAAAGG 58.996 40.000 0.71 0.00 0.00 3.11
5578 5736 5.576563 TCTTGATAACCACTGGAAAAGGA 57.423 39.130 0.71 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.200483 AGGGCCGAATCAATTTAGAAATCA 58.800 37.500 0.00 0.00 0.00 2.57
1 2 5.560953 CGAGGGCCGAATCAATTTAGAAATC 60.561 44.000 0.00 0.00 41.76 2.17
2 3 4.275936 CGAGGGCCGAATCAATTTAGAAAT 59.724 41.667 0.00 0.00 41.76 2.17
3 4 3.625764 CGAGGGCCGAATCAATTTAGAAA 59.374 43.478 0.00 0.00 41.76 2.52
4 5 3.118555 TCGAGGGCCGAATCAATTTAGAA 60.119 43.478 0.00 0.00 45.43 2.10
5 6 2.432874 TCGAGGGCCGAATCAATTTAGA 59.567 45.455 0.00 0.00 45.43 2.10
6 7 2.833794 TCGAGGGCCGAATCAATTTAG 58.166 47.619 0.00 0.00 45.43 1.85
7 8 2.992124 TCGAGGGCCGAATCAATTTA 57.008 45.000 0.00 0.00 45.43 1.40
8 9 3.873781 TCGAGGGCCGAATCAATTT 57.126 47.368 0.00 0.00 45.43 1.82
17 18 2.094752 ACAATTTGAAAATCGAGGGCCG 60.095 45.455 2.79 0.00 40.25 6.13
18 19 3.592898 ACAATTTGAAAATCGAGGGCC 57.407 42.857 2.79 0.00 0.00 5.80
19 20 5.465056 TGAAAACAATTTGAAAATCGAGGGC 59.535 36.000 2.79 0.00 0.00 5.19
20 21 7.656707 ATGAAAACAATTTGAAAATCGAGGG 57.343 32.000 2.79 0.00 0.00 4.30
31 32 9.890085 CGCAACTATCAATATGAAAACAATTTG 57.110 29.630 0.00 0.00 0.00 2.32
32 33 9.638239 ACGCAACTATCAATATGAAAACAATTT 57.362 25.926 0.00 0.00 0.00 1.82
34 35 9.716507 GTACGCAACTATCAATATGAAAACAAT 57.283 29.630 0.00 0.00 0.00 2.71
35 36 7.900864 CGTACGCAACTATCAATATGAAAACAA 59.099 33.333 0.52 0.00 0.00 2.83
36 37 7.275999 TCGTACGCAACTATCAATATGAAAACA 59.724 33.333 11.24 0.00 0.00 2.83
37 38 7.614908 TCGTACGCAACTATCAATATGAAAAC 58.385 34.615 11.24 0.00 0.00 2.43
38 39 7.758613 TCGTACGCAACTATCAATATGAAAA 57.241 32.000 11.24 0.00 0.00 2.29
39 40 7.513969 CGTTCGTACGCAACTATCAATATGAAA 60.514 37.037 11.24 0.00 41.41 2.69
40 41 6.075257 CGTTCGTACGCAACTATCAATATGAA 60.075 38.462 11.24 0.00 41.41 2.57
41 42 5.397240 CGTTCGTACGCAACTATCAATATGA 59.603 40.000 11.24 0.00 41.41 2.15
42 43 5.586755 CGTTCGTACGCAACTATCAATATG 58.413 41.667 11.24 0.00 41.41 1.78
43 44 5.801176 CGTTCGTACGCAACTATCAATAT 57.199 39.130 11.24 0.00 41.41 1.28
57 58 3.476379 GTGTACATCATCGTCGTTCGTAC 59.524 47.826 0.00 0.00 40.80 3.67
58 59 3.124976 TGTGTACATCATCGTCGTTCGTA 59.875 43.478 0.00 0.00 40.80 3.43
59 60 2.095617 TGTGTACATCATCGTCGTTCGT 60.096 45.455 0.00 0.00 40.80 3.85
60 61 2.511879 TGTGTACATCATCGTCGTTCG 58.488 47.619 0.00 0.00 41.41 3.95
61 62 4.026804 GGAATGTGTACATCATCGTCGTTC 60.027 45.833 0.00 1.45 35.10 3.95
62 63 3.863424 GGAATGTGTACATCATCGTCGTT 59.137 43.478 0.00 0.00 35.10 3.85
63 64 3.444916 GGAATGTGTACATCATCGTCGT 58.555 45.455 0.00 0.00 35.10 4.34
64 65 2.794910 GGGAATGTGTACATCATCGTCG 59.205 50.000 0.00 0.00 35.10 5.12
65 66 3.792401 TGGGAATGTGTACATCATCGTC 58.208 45.455 0.00 1.00 35.10 4.20
66 67 3.904800 TGGGAATGTGTACATCATCGT 57.095 42.857 0.00 0.00 35.10 3.73
67 68 8.722480 AATATATGGGAATGTGTACATCATCG 57.278 34.615 0.00 0.00 35.10 3.84
73 74 9.958180 CCATAGAAATATATGGGAATGTGTACA 57.042 33.333 6.25 0.00 45.78 2.90
90 91 9.112725 GGTTAATACGGTTAACACCATAGAAAT 57.887 33.333 20.22 0.00 44.53 2.17
91 92 7.277539 CGGTTAATACGGTTAACACCATAGAAA 59.722 37.037 20.22 0.00 44.53 2.52
92 93 6.756074 CGGTTAATACGGTTAACACCATAGAA 59.244 38.462 20.22 0.00 44.53 2.10
93 94 6.127479 ACGGTTAATACGGTTAACACCATAGA 60.127 38.462 20.22 0.00 44.53 1.98
94 95 6.042143 ACGGTTAATACGGTTAACACCATAG 58.958 40.000 20.22 10.62 44.53 2.23
95 96 5.971763 ACGGTTAATACGGTTAACACCATA 58.028 37.500 20.22 0.00 44.53 2.74
96 97 4.831107 ACGGTTAATACGGTTAACACCAT 58.169 39.130 20.22 0.00 44.53 3.55
97 98 4.264460 ACGGTTAATACGGTTAACACCA 57.736 40.909 20.22 0.00 44.53 4.17
98 99 4.264380 CGTACGGTTAATACGGTTAACACC 59.736 45.833 20.22 3.55 41.33 4.16
99 100 5.090083 TCGTACGGTTAATACGGTTAACAC 58.910 41.667 16.52 12.59 44.36 3.32
100 101 5.298197 TCGTACGGTTAATACGGTTAACA 57.702 39.130 16.52 4.86 44.36 2.41
101 102 5.569823 TGTTCGTACGGTTAATACGGTTAAC 59.430 40.000 16.52 13.97 44.36 2.01
102 103 5.700846 TGTTCGTACGGTTAATACGGTTAA 58.299 37.500 16.52 0.00 44.36 2.01
103 104 5.298197 TGTTCGTACGGTTAATACGGTTA 57.702 39.130 16.52 0.00 44.36 2.85
104 105 4.167554 TGTTCGTACGGTTAATACGGTT 57.832 40.909 16.52 0.00 44.36 4.44
105 106 3.840890 TGTTCGTACGGTTAATACGGT 57.159 42.857 16.52 0.00 44.36 4.83
106 107 5.516339 AGAAATGTTCGTACGGTTAATACGG 59.484 40.000 16.52 0.00 44.36 4.02
107 108 6.559042 AGAAATGTTCGTACGGTTAATACG 57.441 37.500 16.52 1.53 45.35 3.06
108 109 8.482429 CCATAGAAATGTTCGTACGGTTAATAC 58.518 37.037 16.52 5.22 34.02 1.89
109 110 8.196771 ACCATAGAAATGTTCGTACGGTTAATA 58.803 33.333 16.52 1.01 34.02 0.98
110 111 7.010738 CACCATAGAAATGTTCGTACGGTTAAT 59.989 37.037 16.52 1.71 34.02 1.40
111 112 6.310956 CACCATAGAAATGTTCGTACGGTTAA 59.689 38.462 16.52 0.00 34.02 2.01
112 113 5.806502 CACCATAGAAATGTTCGTACGGTTA 59.193 40.000 16.52 1.95 34.02 2.85
113 114 4.628333 CACCATAGAAATGTTCGTACGGTT 59.372 41.667 16.52 3.01 34.02 4.44
114 115 4.178540 CACCATAGAAATGTTCGTACGGT 58.821 43.478 16.52 0.00 34.02 4.83
115 116 4.178540 ACACCATAGAAATGTTCGTACGG 58.821 43.478 16.52 0.00 34.02 4.02
116 117 5.773239 AACACCATAGAAATGTTCGTACG 57.227 39.130 9.53 9.53 30.82 3.67
121 122 4.391830 TGAGCGAACACCATAGAAATGTTC 59.608 41.667 6.32 6.32 45.67 3.18
122 123 4.323417 TGAGCGAACACCATAGAAATGTT 58.677 39.130 0.00 0.00 39.23 2.71
123 124 3.937814 TGAGCGAACACCATAGAAATGT 58.062 40.909 0.00 0.00 0.00 2.71
124 125 4.631377 TCTTGAGCGAACACCATAGAAATG 59.369 41.667 0.00 0.00 0.00 2.32
125 126 4.832248 TCTTGAGCGAACACCATAGAAAT 58.168 39.130 0.00 0.00 0.00 2.17
126 127 4.265904 TCTTGAGCGAACACCATAGAAA 57.734 40.909 0.00 0.00 0.00 2.52
127 128 3.953712 TCTTGAGCGAACACCATAGAA 57.046 42.857 0.00 0.00 0.00 2.10
128 129 3.953712 TTCTTGAGCGAACACCATAGA 57.046 42.857 0.00 0.00 0.00 1.98
129 130 5.006746 GGTATTTCTTGAGCGAACACCATAG 59.993 44.000 0.00 0.00 32.43 2.23
130 131 4.873827 GGTATTTCTTGAGCGAACACCATA 59.126 41.667 0.00 0.00 32.43 2.74
131 132 3.689649 GGTATTTCTTGAGCGAACACCAT 59.310 43.478 0.00 0.00 32.43 3.55
132 133 3.071479 GGTATTTCTTGAGCGAACACCA 58.929 45.455 0.00 0.00 32.43 4.17
133 134 3.071479 TGGTATTTCTTGAGCGAACACC 58.929 45.455 0.00 0.00 32.63 4.16
134 135 4.946784 ATGGTATTTCTTGAGCGAACAC 57.053 40.909 0.00 0.00 0.00 3.32
135 136 8.902540 AATATATGGTATTTCTTGAGCGAACA 57.097 30.769 0.00 0.00 0.00 3.18
191 192 8.582433 TTGAAATTCGGTTTTTCAAATCTACC 57.418 30.769 14.44 0.00 45.29 3.18
198 199 6.365247 TGTCGTTTTGAAATTCGGTTTTTCAA 59.635 30.769 13.41 13.41 46.09 2.69
199 200 5.862323 TGTCGTTTTGAAATTCGGTTTTTCA 59.138 32.000 4.82 4.82 40.37 2.69
200 201 6.320551 TGTCGTTTTGAAATTCGGTTTTTC 57.679 33.333 3.97 0.00 34.40 2.29
201 202 6.019398 GGATGTCGTTTTGAAATTCGGTTTTT 60.019 34.615 3.97 0.00 0.00 1.94
202 203 5.460748 GGATGTCGTTTTGAAATTCGGTTTT 59.539 36.000 3.97 0.00 0.00 2.43
203 204 4.979815 GGATGTCGTTTTGAAATTCGGTTT 59.020 37.500 3.97 0.00 0.00 3.27
204 205 4.277423 AGGATGTCGTTTTGAAATTCGGTT 59.723 37.500 3.97 0.00 0.00 4.44
205 206 3.818773 AGGATGTCGTTTTGAAATTCGGT 59.181 39.130 3.97 0.00 0.00 4.69
206 207 4.419522 AGGATGTCGTTTTGAAATTCGG 57.580 40.909 3.97 0.00 0.00 4.30
207 208 6.771076 TGATAGGATGTCGTTTTGAAATTCG 58.229 36.000 0.00 0.00 0.00 3.34
208 209 8.964420 TTTGATAGGATGTCGTTTTGAAATTC 57.036 30.769 0.00 0.00 0.00 2.17
209 210 9.757227 TTTTTGATAGGATGTCGTTTTGAAATT 57.243 25.926 0.00 0.00 0.00 1.82
210 211 9.191995 GTTTTTGATAGGATGTCGTTTTGAAAT 57.808 29.630 0.00 0.00 0.00 2.17
211 212 8.191446 TGTTTTTGATAGGATGTCGTTTTGAAA 58.809 29.630 0.00 0.00 0.00 2.69
212 213 7.708051 TGTTTTTGATAGGATGTCGTTTTGAA 58.292 30.769 0.00 0.00 0.00 2.69
213 214 7.265647 TGTTTTTGATAGGATGTCGTTTTGA 57.734 32.000 0.00 0.00 0.00 2.69
214 215 7.860373 TCTTGTTTTTGATAGGATGTCGTTTTG 59.140 33.333 0.00 0.00 0.00 2.44
215 216 7.860872 GTCTTGTTTTTGATAGGATGTCGTTTT 59.139 33.333 0.00 0.00 0.00 2.43
216 217 7.012894 TGTCTTGTTTTTGATAGGATGTCGTTT 59.987 33.333 0.00 0.00 0.00 3.60
217 218 6.485313 TGTCTTGTTTTTGATAGGATGTCGTT 59.515 34.615 0.00 0.00 0.00 3.85
218 219 5.995282 TGTCTTGTTTTTGATAGGATGTCGT 59.005 36.000 0.00 0.00 0.00 4.34
219 220 6.307155 GTGTCTTGTTTTTGATAGGATGTCG 58.693 40.000 0.00 0.00 0.00 4.35
220 221 6.206634 TGGTGTCTTGTTTTTGATAGGATGTC 59.793 38.462 0.00 0.00 0.00 3.06
221 222 6.068010 TGGTGTCTTGTTTTTGATAGGATGT 58.932 36.000 0.00 0.00 0.00 3.06
222 223 6.573664 TGGTGTCTTGTTTTTGATAGGATG 57.426 37.500 0.00 0.00 0.00 3.51
223 224 8.877864 TTATGGTGTCTTGTTTTTGATAGGAT 57.122 30.769 0.00 0.00 0.00 3.24
224 225 8.698973 TTTATGGTGTCTTGTTTTTGATAGGA 57.301 30.769 0.00 0.00 0.00 2.94
225 226 8.792633 TCTTTATGGTGTCTTGTTTTTGATAGG 58.207 33.333 0.00 0.00 0.00 2.57
226 227 9.612620 GTCTTTATGGTGTCTTGTTTTTGATAG 57.387 33.333 0.00 0.00 0.00 2.08
227 228 8.573035 GGTCTTTATGGTGTCTTGTTTTTGATA 58.427 33.333 0.00 0.00 0.00 2.15
228 229 7.069331 TGGTCTTTATGGTGTCTTGTTTTTGAT 59.931 33.333 0.00 0.00 0.00 2.57
229 230 6.378564 TGGTCTTTATGGTGTCTTGTTTTTGA 59.621 34.615 0.00 0.00 0.00 2.69
230 231 6.568869 TGGTCTTTATGGTGTCTTGTTTTTG 58.431 36.000 0.00 0.00 0.00 2.44
231 232 6.783708 TGGTCTTTATGGTGTCTTGTTTTT 57.216 33.333 0.00 0.00 0.00 1.94
232 233 6.976934 ATGGTCTTTATGGTGTCTTGTTTT 57.023 33.333 0.00 0.00 0.00 2.43
233 234 7.458397 TCTATGGTCTTTATGGTGTCTTGTTT 58.542 34.615 0.00 0.00 0.00 2.83
234 235 7.016153 TCTATGGTCTTTATGGTGTCTTGTT 57.984 36.000 0.00 0.00 0.00 2.83
235 236 6.620877 TCTATGGTCTTTATGGTGTCTTGT 57.379 37.500 0.00 0.00 0.00 3.16
236 237 8.511604 AATTCTATGGTCTTTATGGTGTCTTG 57.488 34.615 0.00 0.00 0.00 3.02
237 238 8.960591 CAAATTCTATGGTCTTTATGGTGTCTT 58.039 33.333 0.00 0.00 0.00 3.01
238 239 7.067494 GCAAATTCTATGGTCTTTATGGTGTCT 59.933 37.037 0.00 0.00 0.00 3.41
239 240 7.067494 AGCAAATTCTATGGTCTTTATGGTGTC 59.933 37.037 0.00 0.00 0.00 3.67
240 241 6.891908 AGCAAATTCTATGGTCTTTATGGTGT 59.108 34.615 0.00 0.00 0.00 4.16
241 242 7.338800 AGCAAATTCTATGGTCTTTATGGTG 57.661 36.000 0.00 0.00 0.00 4.17
242 243 7.147846 CCAAGCAAATTCTATGGTCTTTATGGT 60.148 37.037 0.00 0.00 0.00 3.55
243 244 7.147846 ACCAAGCAAATTCTATGGTCTTTATGG 60.148 37.037 0.00 0.00 40.23 2.74
244 245 7.775120 ACCAAGCAAATTCTATGGTCTTTATG 58.225 34.615 0.00 0.00 40.23 1.90
245 246 7.961326 ACCAAGCAAATTCTATGGTCTTTAT 57.039 32.000 0.00 0.00 40.23 1.40
246 247 7.361713 CGAACCAAGCAAATTCTATGGTCTTTA 60.362 37.037 5.85 0.00 43.34 1.85
247 248 6.570378 CGAACCAAGCAAATTCTATGGTCTTT 60.570 38.462 5.85 0.00 43.34 2.52
248 249 5.106157 CGAACCAAGCAAATTCTATGGTCTT 60.106 40.000 5.85 0.00 43.34 3.01
249 250 4.396166 CGAACCAAGCAAATTCTATGGTCT 59.604 41.667 5.85 0.00 43.34 3.85
250 251 4.394920 TCGAACCAAGCAAATTCTATGGTC 59.605 41.667 5.85 1.41 43.34 4.02
251 252 4.331968 TCGAACCAAGCAAATTCTATGGT 58.668 39.130 0.00 0.00 45.97 3.55
252 253 4.963276 TCGAACCAAGCAAATTCTATGG 57.037 40.909 0.00 0.00 37.19 2.74
253 254 9.520204 AATAAATCGAACCAAGCAAATTCTATG 57.480 29.630 0.00 0.00 0.00 2.23
255 256 9.921637 AAAATAAATCGAACCAAGCAAATTCTA 57.078 25.926 0.00 0.00 0.00 2.10
256 257 8.831715 AAAATAAATCGAACCAAGCAAATTCT 57.168 26.923 0.00 0.00 0.00 2.40
257 258 9.316859 CAAAAATAAATCGAACCAAGCAAATTC 57.683 29.630 0.00 0.00 0.00 2.17
258 259 8.288913 CCAAAAATAAATCGAACCAAGCAAATT 58.711 29.630 0.00 0.00 0.00 1.82
259 260 7.572910 GCCAAAAATAAATCGAACCAAGCAAAT 60.573 33.333 0.00 0.00 0.00 2.32
260 261 6.293135 GCCAAAAATAAATCGAACCAAGCAAA 60.293 34.615 0.00 0.00 0.00 3.68
261 262 5.178438 GCCAAAAATAAATCGAACCAAGCAA 59.822 36.000 0.00 0.00 0.00 3.91
262 263 4.688413 GCCAAAAATAAATCGAACCAAGCA 59.312 37.500 0.00 0.00 0.00 3.91
263 264 4.688413 TGCCAAAAATAAATCGAACCAAGC 59.312 37.500 0.00 0.00 0.00 4.01
264 265 6.183360 CCATGCCAAAAATAAATCGAACCAAG 60.183 38.462 0.00 0.00 0.00 3.61
265 266 5.641209 CCATGCCAAAAATAAATCGAACCAA 59.359 36.000 0.00 0.00 0.00 3.67
266 267 5.174395 CCATGCCAAAAATAAATCGAACCA 58.826 37.500 0.00 0.00 0.00 3.67
267 268 5.175127 ACCATGCCAAAAATAAATCGAACC 58.825 37.500 0.00 0.00 0.00 3.62
268 269 6.720012 AACCATGCCAAAAATAAATCGAAC 57.280 33.333 0.00 0.00 0.00 3.95
269 270 7.736447 AAAACCATGCCAAAAATAAATCGAA 57.264 28.000 0.00 0.00 0.00 3.71
270 271 7.442364 TCAAAAACCATGCCAAAAATAAATCGA 59.558 29.630 0.00 0.00 0.00 3.59
271 272 7.579726 TCAAAAACCATGCCAAAAATAAATCG 58.420 30.769 0.00 0.00 0.00 3.34
272 273 7.538334 GCTCAAAAACCATGCCAAAAATAAATC 59.462 33.333 0.00 0.00 0.00 2.17
273 274 7.231115 AGCTCAAAAACCATGCCAAAAATAAAT 59.769 29.630 0.00 0.00 0.00 1.40
274 275 6.545298 AGCTCAAAAACCATGCCAAAAATAAA 59.455 30.769 0.00 0.00 0.00 1.40
275 276 6.060788 AGCTCAAAAACCATGCCAAAAATAA 58.939 32.000 0.00 0.00 0.00 1.40
276 277 5.619220 AGCTCAAAAACCATGCCAAAAATA 58.381 33.333 0.00 0.00 0.00 1.40
277 278 4.463070 AGCTCAAAAACCATGCCAAAAAT 58.537 34.783 0.00 0.00 0.00 1.82
278 279 3.876320 GAGCTCAAAAACCATGCCAAAAA 59.124 39.130 9.40 0.00 0.00 1.94
279 280 3.118482 TGAGCTCAAAAACCATGCCAAAA 60.118 39.130 15.67 0.00 0.00 2.44
280 281 2.433604 TGAGCTCAAAAACCATGCCAAA 59.566 40.909 15.67 0.00 0.00 3.28
281 282 2.036217 CTGAGCTCAAAAACCATGCCAA 59.964 45.455 18.85 0.00 0.00 4.52
282 283 1.614903 CTGAGCTCAAAAACCATGCCA 59.385 47.619 18.85 0.00 0.00 4.92
283 284 1.615392 ACTGAGCTCAAAAACCATGCC 59.385 47.619 18.85 0.00 0.00 4.40
284 285 3.375782 AACTGAGCTCAAAAACCATGC 57.624 42.857 18.85 0.00 0.00 4.06
285 286 4.935702 TGAAACTGAGCTCAAAAACCATG 58.064 39.130 18.85 5.82 0.00 3.66
286 287 5.596836 TTGAAACTGAGCTCAAAAACCAT 57.403 34.783 18.85 0.00 0.00 3.55
287 288 5.398603 TTTGAAACTGAGCTCAAAAACCA 57.601 34.783 18.85 9.33 38.32 3.67
292 293 7.066887 TCTGTACATTTTGAAACTGAGCTCAAA 59.933 33.333 18.85 7.55 39.24 2.69
293 294 6.542005 TCTGTACATTTTGAAACTGAGCTCAA 59.458 34.615 18.85 0.00 0.00 3.02
294 295 6.054941 TCTGTACATTTTGAAACTGAGCTCA 58.945 36.000 17.19 17.19 0.00 4.26
295 296 6.203723 ACTCTGTACATTTTGAAACTGAGCTC 59.796 38.462 6.82 6.82 36.91 4.09
296 297 6.017605 CACTCTGTACATTTTGAAACTGAGCT 60.018 38.462 2.14 0.00 36.91 4.09
297 298 6.017934 TCACTCTGTACATTTTGAAACTGAGC 60.018 38.462 2.14 0.00 36.91 4.26
298 299 7.225538 ACTCACTCTGTACATTTTGAAACTGAG 59.774 37.037 2.14 0.00 38.02 3.35
299 300 7.011389 CACTCACTCTGTACATTTTGAAACTGA 59.989 37.037 2.14 0.00 0.00 3.41
300 301 7.011389 TCACTCACTCTGTACATTTTGAAACTG 59.989 37.037 0.00 0.00 0.00 3.16
301 302 7.047891 TCACTCACTCTGTACATTTTGAAACT 58.952 34.615 0.00 0.00 0.00 2.66
302 303 7.246674 TCACTCACTCTGTACATTTTGAAAC 57.753 36.000 0.00 0.00 0.00 2.78
303 304 8.450578 AATCACTCACTCTGTACATTTTGAAA 57.549 30.769 0.00 0.00 0.00 2.69
304 305 8.344831 CAAATCACTCACTCTGTACATTTTGAA 58.655 33.333 0.00 0.00 0.00 2.69
305 306 7.714813 TCAAATCACTCACTCTGTACATTTTGA 59.285 33.333 0.00 0.00 0.00 2.69
306 307 7.864686 TCAAATCACTCACTCTGTACATTTTG 58.135 34.615 0.00 0.00 0.00 2.44
307 308 7.933577 TCTCAAATCACTCACTCTGTACATTTT 59.066 33.333 0.00 0.00 0.00 1.82
308 309 7.445121 TCTCAAATCACTCACTCTGTACATTT 58.555 34.615 0.00 0.00 0.00 2.32
309 310 6.997655 TCTCAAATCACTCACTCTGTACATT 58.002 36.000 0.00 0.00 0.00 2.71
310 311 6.596309 TCTCAAATCACTCACTCTGTACAT 57.404 37.500 0.00 0.00 0.00 2.29
311 312 6.405278 TTCTCAAATCACTCACTCTGTACA 57.595 37.500 0.00 0.00 0.00 2.90
312 313 7.093354 TCATTCTCAAATCACTCACTCTGTAC 58.907 38.462 0.00 0.00 0.00 2.90
313 314 7.177392 TCTCATTCTCAAATCACTCACTCTGTA 59.823 37.037 0.00 0.00 0.00 2.74
314 315 6.014755 TCTCATTCTCAAATCACTCACTCTGT 60.015 38.462 0.00 0.00 0.00 3.41
315 316 6.396450 TCTCATTCTCAAATCACTCACTCTG 58.604 40.000 0.00 0.00 0.00 3.35
316 317 6.602410 TCTCATTCTCAAATCACTCACTCT 57.398 37.500 0.00 0.00 0.00 3.24
317 318 7.676807 GCATTCTCATTCTCAAATCACTCACTC 60.677 40.741 0.00 0.00 0.00 3.51
318 319 6.093771 GCATTCTCATTCTCAAATCACTCACT 59.906 38.462 0.00 0.00 0.00 3.41
319 320 6.128090 TGCATTCTCATTCTCAAATCACTCAC 60.128 38.462 0.00 0.00 0.00 3.51
320 321 5.941647 TGCATTCTCATTCTCAAATCACTCA 59.058 36.000 0.00 0.00 0.00 3.41
321 322 6.432607 TGCATTCTCATTCTCAAATCACTC 57.567 37.500 0.00 0.00 0.00 3.51
322 323 7.991460 TCTATGCATTCTCATTCTCAAATCACT 59.009 33.333 3.54 0.00 0.00 3.41
323 324 8.151141 TCTATGCATTCTCATTCTCAAATCAC 57.849 34.615 3.54 0.00 0.00 3.06
324 325 7.991460 ACTCTATGCATTCTCATTCTCAAATCA 59.009 33.333 3.54 0.00 0.00 2.57
325 326 8.283992 CACTCTATGCATTCTCATTCTCAAATC 58.716 37.037 3.54 0.00 0.00 2.17
326 327 7.228906 CCACTCTATGCATTCTCATTCTCAAAT 59.771 37.037 3.54 0.00 0.00 2.32
327 328 6.541278 CCACTCTATGCATTCTCATTCTCAAA 59.459 38.462 3.54 0.00 0.00 2.69
328 329 6.053650 CCACTCTATGCATTCTCATTCTCAA 58.946 40.000 3.54 0.00 0.00 3.02
329 330 5.454329 CCCACTCTATGCATTCTCATTCTCA 60.454 44.000 3.54 0.00 0.00 3.27
330 331 4.996122 CCCACTCTATGCATTCTCATTCTC 59.004 45.833 3.54 0.00 0.00 2.87
331 332 4.202440 CCCCACTCTATGCATTCTCATTCT 60.202 45.833 3.54 0.00 0.00 2.40
332 333 4.070716 CCCCACTCTATGCATTCTCATTC 58.929 47.826 3.54 0.00 0.00 2.67
333 334 3.461085 ACCCCACTCTATGCATTCTCATT 59.539 43.478 3.54 0.00 0.00 2.57
334 335 3.051581 ACCCCACTCTATGCATTCTCAT 58.948 45.455 3.54 0.00 0.00 2.90
335 336 2.481441 ACCCCACTCTATGCATTCTCA 58.519 47.619 3.54 0.00 0.00 3.27
336 337 3.567478 AACCCCACTCTATGCATTCTC 57.433 47.619 3.54 0.00 0.00 2.87
337 338 4.322057 AAAACCCCACTCTATGCATTCT 57.678 40.909 3.54 0.00 0.00 2.40
879 888 4.662961 CTCACCAGTGTGCGGCGA 62.663 66.667 12.98 0.00 42.46 5.54
907 916 0.323629 GGATTTCCACCTCCGTGTGA 59.676 55.000 0.00 0.00 38.55 3.58
908 917 2.854522 GGATTTCCACCTCCGTGTG 58.145 57.895 0.00 0.00 38.41 3.82
915 924 3.976701 CTGCCGCGGATTTCCACCT 62.977 63.158 33.48 0.00 35.14 4.00
941 954 1.138266 GACCGAATCGAGGGGAATCAA 59.862 52.381 3.36 0.00 0.00 2.57
946 959 2.443390 GGGACCGAATCGAGGGGA 60.443 66.667 3.36 0.00 0.00 4.81
1082 1095 1.523032 GGCACGTAATCGAAGGGGG 60.523 63.158 0.00 0.00 40.62 5.40
1123 1137 0.817654 ACCACGAGCGATCATCAGAA 59.182 50.000 0.00 0.00 0.00 3.02
1372 1402 2.046892 CAACCTGCCTGACGAGGG 60.047 66.667 0.00 0.00 40.19 4.30
1401 1486 2.687425 ACACTGCACACAATTAGCACAA 59.313 40.909 0.00 0.00 34.13 3.33
1470 1555 3.780626 AGTTCCTAACACAGCTAGGACT 58.219 45.455 1.44 1.24 43.74 3.85
1477 1562 7.410485 GCATAGAATTAAGTTCCTAACACAGC 58.590 38.462 0.00 0.00 37.56 4.40
1478 1563 7.277981 ACGCATAGAATTAAGTTCCTAACACAG 59.722 37.037 0.00 0.00 37.56 3.66
1506 1591 1.209128 CGAATAGCTAACCTGCGTGG 58.791 55.000 0.00 0.00 42.93 4.94
1507 1592 1.209128 CCGAATAGCTAACCTGCGTG 58.791 55.000 0.00 0.00 38.13 5.34
1508 1593 0.822164 ACCGAATAGCTAACCTGCGT 59.178 50.000 0.00 0.00 38.13 5.24
1509 1594 2.391879 GTACCGAATAGCTAACCTGCG 58.608 52.381 0.00 0.00 38.13 5.18
1511 1596 3.065786 TGACGTACCGAATAGCTAACCTG 59.934 47.826 0.00 0.00 0.00 4.00
1512 1597 3.282021 TGACGTACCGAATAGCTAACCT 58.718 45.455 0.00 0.00 0.00 3.50
1513 1598 3.313526 TCTGACGTACCGAATAGCTAACC 59.686 47.826 0.00 0.00 0.00 2.85
1515 1600 5.565592 TTTCTGACGTACCGAATAGCTAA 57.434 39.130 0.00 0.00 0.00 3.09
1516 1601 5.762825 ATTTCTGACGTACCGAATAGCTA 57.237 39.130 0.00 0.00 0.00 3.32
1517 1602 4.650754 ATTTCTGACGTACCGAATAGCT 57.349 40.909 0.00 0.00 0.00 3.32
1518 1603 4.208666 GGAATTTCTGACGTACCGAATAGC 59.791 45.833 0.00 0.00 0.00 2.97
1519 1604 5.345702 TGGAATTTCTGACGTACCGAATAG 58.654 41.667 0.00 0.00 0.00 1.73
1520 1605 5.327616 TGGAATTTCTGACGTACCGAATA 57.672 39.130 0.00 0.00 0.00 1.75
1521 1606 4.181578 CTGGAATTTCTGACGTACCGAAT 58.818 43.478 0.00 0.00 0.00 3.34
1522 1607 3.581755 CTGGAATTTCTGACGTACCGAA 58.418 45.455 0.00 0.00 0.00 4.30
1524 1609 1.659098 GCTGGAATTTCTGACGTACCG 59.341 52.381 0.00 0.00 0.00 4.02
1525 1610 2.673368 CTGCTGGAATTTCTGACGTACC 59.327 50.000 0.00 0.00 0.00 3.34
1526 1611 2.094417 GCTGCTGGAATTTCTGACGTAC 59.906 50.000 0.00 0.00 0.00 3.67
1532 1617 6.690194 AACTAATAGCTGCTGGAATTTCTG 57.310 37.500 13.43 1.85 0.00 3.02
1542 1627 7.547370 CAGAAGTAACAGAAACTAATAGCTGCT 59.453 37.037 7.57 7.57 31.74 4.24
1545 1630 8.585881 TGACAGAAGTAACAGAAACTAATAGCT 58.414 33.333 0.00 0.00 0.00 3.32
1546 1631 8.758633 TGACAGAAGTAACAGAAACTAATAGC 57.241 34.615 0.00 0.00 0.00 2.97
1550 1635 9.607988 TGAAATGACAGAAGTAACAGAAACTAA 57.392 29.630 0.00 0.00 0.00 2.24
1551 1636 9.778741 ATGAAATGACAGAAGTAACAGAAACTA 57.221 29.630 0.00 0.00 0.00 2.24
1552 1637 8.682936 ATGAAATGACAGAAGTAACAGAAACT 57.317 30.769 0.00 0.00 0.00 2.66
1593 1689 7.426667 AGGGGGTTTAATTTTGAATATCCTGA 58.573 34.615 0.00 0.00 0.00 3.86
1610 1706 8.166726 TGCATTTATTTATTTGAAAGGGGGTTT 58.833 29.630 0.00 0.00 0.00 3.27
1674 1781 3.050703 AGCCAACTTATCGCTGACG 57.949 52.632 0.00 0.00 42.01 4.35
1681 1788 3.620488 TGAACCCATCAGCCAACTTATC 58.380 45.455 0.00 0.00 33.04 1.75
1684 1791 2.610438 ATGAACCCATCAGCCAACTT 57.390 45.000 0.00 0.00 42.53 2.66
1715 1822 0.324552 TCTGCATGGATTGGTTGGGG 60.325 55.000 0.00 0.00 0.00 4.96
1716 1823 1.108776 CTCTGCATGGATTGGTTGGG 58.891 55.000 0.00 0.00 0.00 4.12
1743 1850 3.821841 CAACCAAATTTACACGAGCCTC 58.178 45.455 0.00 0.00 0.00 4.70
1794 1901 5.643777 GTCAGTTAATACACACATCTGCCTT 59.356 40.000 0.00 0.00 0.00 4.35
1801 1908 8.296713 GTCAAATTGGTCAGTTAATACACACAT 58.703 33.333 0.00 0.00 0.00 3.21
1840 1947 4.629634 ACGTGCGACATCATTATTCTGAAA 59.370 37.500 0.00 0.00 0.00 2.69
1857 1964 4.059459 GTGTGGAGCGAACGTGCG 62.059 66.667 12.84 12.84 40.67 5.34
1860 1967 3.728076 ATATATGTGTGGAGCGAACGT 57.272 42.857 0.00 0.00 0.00 3.99
1920 2027 3.464828 ACTCATTATTGGTGGAGTCCCT 58.535 45.455 6.74 0.00 35.85 4.20
2171 2278 6.109359 GCAGCTCCATTCTTAACTCTTCTAA 58.891 40.000 0.00 0.00 0.00 2.10
2372 2479 4.768130 TTGTTTGTTTGAAGTCAACGGA 57.232 36.364 0.00 0.00 35.28 4.69
2589 2696 3.583806 ACGAGAGATCTTGAAGCTGTTG 58.416 45.455 0.00 0.00 0.00 3.33
2744 2851 5.401550 ACAACACATTGACTCACAAAGTTG 58.598 37.500 16.27 16.27 44.84 3.16
2942 3049 4.571984 TGAGTTGCATAATGTTCATCTCCG 59.428 41.667 0.00 0.00 0.00 4.63
2973 3080 1.372087 CCTGCTTCAATGGCCTCGAC 61.372 60.000 3.32 0.00 0.00 4.20
3490 3615 9.906660 TTCAAAATAACAAGCAGAAAATCGTAT 57.093 25.926 0.00 0.00 0.00 3.06
3514 3639 5.485662 AACAGATAAGCGGCAGTATTTTC 57.514 39.130 1.45 0.00 0.00 2.29
3525 3650 5.456497 CCATGCAACAATAAACAGATAAGCG 59.544 40.000 0.00 0.00 0.00 4.68
3529 3654 6.135290 GCTCCATGCAACAATAAACAGATA 57.865 37.500 0.00 0.00 42.31 1.98
3549 3674 3.851098 AGAACGTCTACAATTCCTGCTC 58.149 45.455 0.00 0.00 0.00 4.26
3628 3753 6.444633 AGAAGTGGAATTACGGATACATACG 58.555 40.000 0.00 0.00 40.74 3.06
3645 3770 7.441157 TGTGTTTACTCACAAGAATAGAAGTGG 59.559 37.037 0.00 0.00 43.92 4.00
3688 3813 3.899734 TGAATGGCATGAACTTTTGACG 58.100 40.909 0.00 0.00 0.00 4.35
3729 3854 6.393171 TCCTATAATCATCAAGCATCGACAG 58.607 40.000 0.00 0.00 0.00 3.51
3810 3935 6.246332 CAGATACAAGTGCAAATAAACGTTCG 59.754 38.462 0.00 0.00 0.00 3.95
3811 3936 7.059488 CACAGATACAAGTGCAAATAAACGTTC 59.941 37.037 0.00 0.00 0.00 3.95
3815 3940 7.860373 TGAACACAGATACAAGTGCAAATAAAC 59.140 33.333 0.00 0.00 39.30 2.01
3819 3944 6.432162 AGATGAACACAGATACAAGTGCAAAT 59.568 34.615 0.00 0.00 39.30 2.32
3820 3945 5.764686 AGATGAACACAGATACAAGTGCAAA 59.235 36.000 0.00 0.00 39.30 3.68
3821 3946 5.179929 CAGATGAACACAGATACAAGTGCAA 59.820 40.000 0.00 0.00 39.30 4.08
3862 3987 2.089201 CTGATCCTGCAATTGCTCACA 58.911 47.619 29.37 19.45 42.66 3.58
3869 3994 3.946558 GAGCTTCTTCTGATCCTGCAATT 59.053 43.478 0.00 0.00 0.00 2.32
3891 4016 3.242673 GCTCAGCTTTGAATTGATCCTCG 60.243 47.826 0.00 0.00 0.00 4.63
3963 4088 3.720002 AGTTTCTGGTAACCTTCTTCCCA 59.280 43.478 0.00 0.00 0.00 4.37
3973 4098 1.275573 AGCCGAGGAGTTTCTGGTAAC 59.724 52.381 0.00 0.00 0.00 2.50
3985 4110 1.675219 GGTTTGTACCAGCCGAGGA 59.325 57.895 0.00 0.00 44.36 3.71
4035 4160 4.761739 TGAGGTGTCAATGATTTTGGAGTC 59.238 41.667 0.00 0.00 0.00 3.36
4356 4481 2.267961 GCCTTCGGTACCACTGGG 59.732 66.667 13.54 9.07 41.29 4.45
4360 4485 0.735287 GTTCTCGCCTTCGGTACCAC 60.735 60.000 13.54 0.00 36.13 4.16
4449 4574 3.730761 CAGAGCAGGCGTTGTGGC 61.731 66.667 0.00 0.00 45.27 5.01
4476 4601 4.648626 GCAGACAGGTGCAGCCCA 62.649 66.667 13.29 0.00 43.41 5.36
4478 4603 4.996434 ACGCAGACAGGTGCAGCC 62.996 66.667 13.29 4.65 44.21 4.85
4590 4715 2.419198 CCCGGCATTCCTCGAGAG 59.581 66.667 15.71 4.11 0.00 3.20
4614 4739 3.118738 ACATACTTGCAGCTACCTACACC 60.119 47.826 0.00 0.00 0.00 4.16
4628 4753 2.292569 GCCATGCCAGATGACATACTTG 59.707 50.000 0.00 0.00 0.00 3.16
4681 4806 8.523915 TCAGAAAAATATGTGCCTGTATCAAT 57.476 30.769 0.00 0.00 0.00 2.57
4713 4838 3.379372 AGAAACATGACATATGGCTGTGC 59.621 43.478 10.60 7.82 0.00 4.57
4736 4861 7.001674 TGTAAATCTGTTACCAACCAACTGAT 58.998 34.615 0.00 0.00 42.71 2.90
4737 4862 6.358178 TGTAAATCTGTTACCAACCAACTGA 58.642 36.000 0.00 0.00 37.96 3.41
4738 4863 6.627395 TGTAAATCTGTTACCAACCAACTG 57.373 37.500 0.00 0.00 0.00 3.16
4739 4864 7.657336 CAATGTAAATCTGTTACCAACCAACT 58.343 34.615 0.00 0.00 0.00 3.16
4743 4868 6.092748 CAGCAATGTAAATCTGTTACCAACC 58.907 40.000 0.00 0.00 0.00 3.77
4810 4935 3.738282 CACATAGAGTTAAGCATCTCCGC 59.262 47.826 0.00 0.00 0.00 5.54
4832 4957 1.006832 ATATCACAAGCAACGCGGAC 58.993 50.000 12.47 0.00 0.00 4.79
4865 4990 4.985413 GCTGCTAGCAATGTTATGTTCAA 58.015 39.130 19.86 0.00 41.89 2.69
4882 5007 5.450965 GCTACATGGAAAATGTAATGCTGCT 60.451 40.000 0.00 0.00 34.50 4.24
4915 5040 1.130373 ACATGTTGCCTGTTTATCGCG 59.870 47.619 0.00 0.00 0.00 5.87
4996 5121 8.655970 GCCAATGGTTCATTTTACAAATTAGTC 58.344 33.333 0.00 0.00 31.05 2.59
5031 5156 2.668550 GAGGTGCGTGTGGGGTTC 60.669 66.667 0.00 0.00 0.00 3.62
5046 5171 2.631418 CACAATGGCTTTGAGCAGAG 57.369 50.000 18.73 0.00 44.75 3.35
5086 5211 1.792006 AACTAGGTGCTTTTCGACGG 58.208 50.000 0.00 0.00 0.00 4.79
5131 5257 1.084935 AAATATGTACACGCGCGGCA 61.085 50.000 35.22 25.11 0.00 5.69
5135 5261 4.039703 TCAGAGTAAATATGTACACGCGC 58.960 43.478 5.73 0.00 0.00 6.86
5137 5263 7.595130 TCATCATCAGAGTAAATATGTACACGC 59.405 37.037 5.84 0.00 0.00 5.34
5190 5316 3.181462 TGCATGAAAGCAGAGGATACGAT 60.181 43.478 0.00 0.00 40.11 3.73
5193 5319 4.397417 AGTTTGCATGAAAGCAGAGGATAC 59.603 41.667 2.80 0.00 46.54 2.24
5230 5356 6.925610 TTAGCAGTGATCACATTATTGTCC 57.074 37.500 27.02 5.30 32.34 4.02
5243 5369 6.595326 TCAGAATCGAAACATTTAGCAGTGAT 59.405 34.615 0.00 0.00 0.00 3.06
5248 5374 6.260050 GGGTATCAGAATCGAAACATTTAGCA 59.740 38.462 0.00 0.00 0.00 3.49
5276 5402 1.346722 CGACCCTGTTACACTTCCCTT 59.653 52.381 0.00 0.00 0.00 3.95
5278 5404 0.971386 TCGACCCTGTTACACTTCCC 59.029 55.000 0.00 0.00 0.00 3.97
5283 5430 1.429463 CTGCTTCGACCCTGTTACAC 58.571 55.000 0.00 0.00 0.00 2.90
5293 5440 1.681793 TGATACCCTAGCTGCTTCGAC 59.318 52.381 7.79 0.00 0.00 4.20
5363 5510 0.040058 AATGCAATGCAGACAGGGGA 59.960 50.000 14.98 0.00 43.65 4.81
5387 5534 2.472232 GAAAAGCCGGGGAAAGCACG 62.472 60.000 2.18 0.00 0.00 5.34
5389 5536 1.152652 TGAAAAGCCGGGGAAAGCA 60.153 52.632 2.18 0.00 0.00 3.91
5390 5537 1.289066 GTGAAAAGCCGGGGAAAGC 59.711 57.895 2.18 0.00 0.00 3.51
5391 5538 1.862602 CGGTGAAAAGCCGGGGAAAG 61.863 60.000 2.18 0.00 44.98 2.62
5393 5540 2.281900 CGGTGAAAAGCCGGGGAA 60.282 61.111 2.18 0.00 44.98 3.97
5399 5546 3.308530 CTGTCAATTTCGGTGAAAAGCC 58.691 45.455 0.00 0.00 35.11 4.35
5400 5547 2.726241 GCTGTCAATTTCGGTGAAAAGC 59.274 45.455 0.00 0.00 35.11 3.51
5401 5548 3.963665 TGCTGTCAATTTCGGTGAAAAG 58.036 40.909 0.00 0.00 35.11 2.27
5404 5551 3.567585 TGAATGCTGTCAATTTCGGTGAA 59.432 39.130 0.00 0.00 0.00 3.18
5408 5556 3.244976 GGTTGAATGCTGTCAATTTCGG 58.755 45.455 6.02 0.00 39.61 4.30
5423 5571 4.202305 CCCCTGTTTTTAAGCATGGTTGAA 60.202 41.667 20.13 15.16 0.00 2.69
5429 5577 1.994916 CGCCCCTGTTTTTAAGCATG 58.005 50.000 0.00 0.00 0.00 4.06
5430 5578 0.246360 GCGCCCCTGTTTTTAAGCAT 59.754 50.000 0.00 0.00 0.00 3.79
5436 5584 1.151908 TAGGTGCGCCCCTGTTTTT 59.848 52.632 22.71 0.00 35.97 1.94
5448 5596 3.189287 CAGAAGTCCAATGTTGTAGGTGC 59.811 47.826 0.00 0.00 0.00 5.01
5457 5605 1.280421 GGAGCTCCAGAAGTCCAATGT 59.720 52.381 28.43 0.00 35.64 2.71
5521 5669 4.405358 TCTTGATCCAAAAAGCTGGTGTTT 59.595 37.500 0.00 0.00 37.74 2.83
5523 5671 3.565307 TCTTGATCCAAAAAGCTGGTGT 58.435 40.909 0.00 0.00 37.74 4.16
5528 5676 7.472334 ACATGTAATCTTGATCCAAAAAGCT 57.528 32.000 0.00 0.00 0.00 3.74
5529 5677 8.031277 AGAACATGTAATCTTGATCCAAAAAGC 58.969 33.333 0.00 0.00 0.00 3.51
5530 5678 9.918630 AAGAACATGTAATCTTGATCCAAAAAG 57.081 29.630 11.20 0.00 34.70 2.27
5531 5679 9.912634 GAAGAACATGTAATCTTGATCCAAAAA 57.087 29.630 15.82 0.00 36.08 1.94
5532 5680 9.300681 AGAAGAACATGTAATCTTGATCCAAAA 57.699 29.630 15.82 0.00 36.08 2.44
5534 5682 8.733458 CAAGAAGAACATGTAATCTTGATCCAA 58.267 33.333 27.57 0.00 46.16 3.53
5547 5705 5.707298 CCAGTGGTTATCAAGAAGAACATGT 59.293 40.000 0.00 0.00 0.00 3.21
5548 5706 5.939883 TCCAGTGGTTATCAAGAAGAACATG 59.060 40.000 9.54 0.00 0.00 3.21
5549 5707 6.126863 TCCAGTGGTTATCAAGAAGAACAT 57.873 37.500 9.54 0.00 0.00 2.71
5550 5708 5.560722 TCCAGTGGTTATCAAGAAGAACA 57.439 39.130 9.54 0.00 0.00 3.18
5551 5709 6.877611 TTTCCAGTGGTTATCAAGAAGAAC 57.122 37.500 9.54 0.00 0.00 3.01
5552 5710 6.490040 CCTTTTCCAGTGGTTATCAAGAAGAA 59.510 38.462 9.54 0.00 0.00 2.52
5553 5711 6.003950 CCTTTTCCAGTGGTTATCAAGAAGA 58.996 40.000 9.54 0.00 0.00 2.87
5554 5712 6.003950 TCCTTTTCCAGTGGTTATCAAGAAG 58.996 40.000 9.54 0.00 0.00 2.85
5557 5715 6.840780 ATTCCTTTTCCAGTGGTTATCAAG 57.159 37.500 9.54 5.49 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.