AutoCloner

Multiple sequence alignment - TraesCS1B01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G400100	chr1B	100.000	2867	0	0	1	2867	630819472	630822338	0.000000e+00	5295.0
1	TraesCS1B01G400100	chr1B	85.965	285	40	0	625	909	630725138	630725422	3.590000e-79	305.0
2	TraesCS1B01G400100	chr1B	93.846	65	2	2	1	63	655578554	655578618	2.350000e-16	97.1
3	TraesCS1B01G400100	chr1A	93.779	2363	105	18	57	2380	551310679	551313038	0.000000e+00	3511.0
4	TraesCS1B01G400100	chr1A	82.565	1692	220	38	453	2112	551307144	551308792	0.000000e+00	1421.0
5	TraesCS1B01G400100	chr1A	80.913	482	42	21	2409	2865	551313134	551313590	4.580000e-88	335.0
6	TraesCS1B01G400100	chr1D	91.708	2436	123	36	57	2431	458875198	458877615	0.000000e+00	3306.0
7	TraesCS1B01G400100	chr1D	83.998	1606	187	35	456	2046	458872069	458873619	0.000000e+00	1478.0
8	TraesCS1B01G400100	chr1D	90.511	411	38	1	2458	2867	458877600	458878010	2.510000e-150	542.0
9	TraesCS1B01G400100	chr3A	75.067	1496	270	71	671	2113	696348243	696346798	4.090000e-168	601.0
10	TraesCS1B01G400100	chr5D	75.053	1427	249	70	751	2110	47531150	47532536	5.360000e-157	564.0
11	TraesCS1B01G400100	chr5D	73.690	878	176	41	676	1513	423535299	423534437	1.000000e-74	291.0
12	TraesCS1B01G400100	chr3B	74.668	1508	269	65	671	2113	747099327	747100786	5.360000e-157	564.0
13	TraesCS1B01G400100	chr3D	73.907	1510	272	76	671	2113	560280971	560279517	7.140000e-136	494.0
14	TraesCS1B01G400100	chr6D	77.284	810	160	17	652	1443	24933975	24934778	3.370000e-124	455.0
15	TraesCS1B01G400100	chr6D	75.580	819	162	25	671	1462	472931114	472931921	1.250000e-98	370.0
16	TraesCS1B01G400100	chr6D	73.274	565	114	31	671	1214	473114913	473114365	3.800000e-39	172.0
17	TraesCS1B01G400100	chr6D	89.474	57	3	2	58	112	307526347	307526402	5.130000e-08	69.4
18	TraesCS1B01G400100	chr7B	87.332	371	45	2	1474	1843	620678217	620677848	9.500000e-115	424.0
19	TraesCS1B01G400100	chr7B	96.774	62	2	0	1	62	429157920	429157859	1.410000e-18	104.0
20	TraesCS1B01G400100	chr6B	76.398	805	153	29	671	1450	718256163	718256955	1.600000e-107	399.0
21	TraesCS1B01G400100	chr6B	84.677	124	13	5	2187	2305	718232434	718232556	5.020000e-23	119.0
22	TraesCS1B01G400100	chr6B	98.305	59	1	0	1	59	279940164	279940106	1.410000e-18	104.0
23	TraesCS1B01G400100	chr7D	75.421	891	178	30	630	1494	560677075	560676200	7.450000e-106	394.0
24	TraesCS1B01G400100	chr7D	78.243	478	85	17	956	1419	602292158	602292630	3.610000e-74	289.0
25	TraesCS1B01G400100	chr5A	73.654	873	182	36	676	1513	537124940	537124081	7.770000e-76	294.0
26	TraesCS1B01G400100	chrUn	96.721	61	2	0	1	61	3110558	3110498	5.050000e-18	102.0
27	TraesCS1B01G400100	chr4D	96.721	61	2	0	1	61	353826912	353826852	5.050000e-18	102.0
28	TraesCS1B01G400100	chr4D	96.721	61	2	0	1	61	362529372	362529312	5.050000e-18	102.0
29	TraesCS1B01G400100	chr4D	96.721	61	2	0	1	61	387347734	387347794	5.050000e-18	102.0
30	TraesCS1B01G400100	chr2D	96.774	62	1	1	1	62	277485242	277485182	5.050000e-18	102.0
31	TraesCS1B01G400100	chr7A	94.118	68	1	3	1	68	689114984	689114920	1.820000e-17	100.0
32	TraesCS1B01G400100	chr6A	80.142	141	22	5	646	784	616892480	616892344	1.820000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G400100	chr1B	630819472	630822338	2866	False	5295.000000	5295	100.000000	1	2867	1	chr1B.!!$F2	2866
1	TraesCS1B01G400100	chr1A	551307144	551313590	6446	False	1755.666667	3511	85.752333	57	2865	3	chr1A.!!$F1	2808
2	TraesCS1B01G400100	chr1D	458872069	458878010	5941	False	1775.333333	3306	88.739000	57	2867	3	chr1D.!!$F1	2810
3	TraesCS1B01G400100	chr3A	696346798	696348243	1445	True	601.000000	601	75.067000	671	2113	1	chr3A.!!$R1	1442
4	TraesCS1B01G400100	chr5D	47531150	47532536	1386	False	564.000000	564	75.053000	751	2110	1	chr5D.!!$F1	1359
5	TraesCS1B01G400100	chr5D	423534437	423535299	862	True	291.000000	291	73.690000	676	1513	1	chr5D.!!$R1	837
6	TraesCS1B01G400100	chr3B	747099327	747100786	1459	False	564.000000	564	74.668000	671	2113	1	chr3B.!!$F1	1442
7	TraesCS1B01G400100	chr3D	560279517	560280971	1454	True	494.000000	494	73.907000	671	2113	1	chr3D.!!$R1	1442
8	TraesCS1B01G400100	chr6D	24933975	24934778	803	False	455.000000	455	77.284000	652	1443	1	chr6D.!!$F1	791
9	TraesCS1B01G400100	chr6D	472931114	472931921	807	False	370.000000	370	75.580000	671	1462	1	chr6D.!!$F3	791
10	TraesCS1B01G400100	chr6B	718256163	718256955	792	False	399.000000	399	76.398000	671	1450	1	chr6B.!!$F2	779
11	TraesCS1B01G400100	chr7D	560676200	560677075	875	True	394.000000	394	75.421000	630	1494	1	chr7D.!!$R1	864
12	TraesCS1B01G400100	chr5A	537124081	537124940	859	True	294.000000	294	73.654000	676	1513	1	chr5A.!!$R1	837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
440	3935	0.329596	CCTAACTCTTGGCAGGCCTT	59.67	55.0	0.0	0.0	36.94	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2356	9640	0.042731	TCCGACCTTCCTCTCCCATT	59.957	55.0	0.0	0.0	0.0	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	8.748412	TCTTCAATACACCAAAATCATTAAGGG	58.252	33.333	0.00	0.00	0.00	3.95
39	40	5.869649	ATACACCAAAATCATTAAGGGGC	57.130	39.130	0.00	0.00	0.00	5.80
40	41	3.515562	ACACCAAAATCATTAAGGGGCA	58.484	40.909	0.00	0.00	0.00	5.36
41	42	3.260632	ACACCAAAATCATTAAGGGGCAC	59.739	43.478	0.00	0.00	0.00	5.01
42	43	3.515104	CACCAAAATCATTAAGGGGCACT	59.485	43.478	0.00	0.00	0.00	4.40
44	45	4.956075	ACCAAAATCATTAAGGGGCACTAG	59.044	41.667	0.00	0.00	0.00	2.57
46	47	5.835280	CCAAAATCATTAAGGGGCACTAGAT	59.165	40.000	0.00	0.00	0.00	1.98
47	48	6.239120	CCAAAATCATTAAGGGGCACTAGATG	60.239	42.308	0.00	0.00	0.00	2.90
73	3560	7.699391	GCACTTACACTCTCACGTTAATGTATA	59.301	37.037	0.00	0.00	0.00	1.47
79	3566	8.630037	ACACTCTCACGTTAATGTATATCATCA	58.370	33.333	0.00	0.00	35.48	3.07
120	3607	6.923508	ACGTAGTATACATCCATGTGAACATG	59.076	38.462	15.13	15.13	46.31	3.21
123	3610	7.307396	GTAGTATACATCCATGTGAACATGTGC	60.307	40.741	19.30	0.00	45.33	4.57
140	3627	9.511022	GAACATGTGCGATTATTTTTACAAAAC	57.489	29.630	0.00	0.00	0.00	2.43
141	3628	8.810652	ACATGTGCGATTATTTTTACAAAACT	57.189	26.923	0.00	0.00	0.00	2.66
214	3702	5.511088	GCATCTGCATTTTTCAAGTGAAG	57.489	39.130	0.00	0.00	41.59	3.02
223	3711	8.955388	TGCATTTTTCAAGTGAAGTGCTATATA	58.045	29.630	19.58	5.85	38.43	0.86
254	3742	9.775854	TCCGTAAATGAAAACCGGATTATATTA	57.224	29.630	9.46	0.00	42.33	0.98
328	3818	0.601841	TCGTTTCAGGCTTCGGTTCC	60.602	55.000	0.00	0.00	0.00	3.62
438	3933	1.077429	CCCTAACTCTTGGCAGGCC	60.077	63.158	2.62	2.62	0.00	5.19
439	3934	1.566298	CCCTAACTCTTGGCAGGCCT	61.566	60.000	12.19	0.00	36.94	5.19
440	3935	0.329596	CCTAACTCTTGGCAGGCCTT	59.670	55.000	0.00	0.00	36.94	4.35
515	4014	2.108168	CATACTCTGTTTCCGGGGAGA	58.892	52.381	0.00	0.00	0.00	3.71
623	4122	3.006430	TCGCCATGTCAACTCTGAACTTA	59.994	43.478	0.00	0.00	31.88	2.24
664	4164	3.430565	ATCCGCTCGCAGATTCGCA	62.431	57.895	0.00	0.00	33.89	5.10
984	4536	0.601057	TCAGTTTCATCGACGAGGCA	59.399	50.000	4.29	0.00	0.00	4.75
1111	4672	3.922910	TCAGCGAATCTGATGGATGATC	58.077	45.455	5.99	0.00	46.34	2.92
1157	4724	0.320771	GTCTGCAACACCGAGGATGT	60.321	55.000	0.00	0.00	0.00	3.06
1250	4841	3.588955	CTGATGTGACATTCGAGGTCAA	58.411	45.455	19.54	12.36	45.96	3.18
1306	4897	0.531200	AGCCCGTTCTAAGGTCTTCG	59.469	55.000	0.00	0.00	0.00	3.79
1546	8746	3.307129	GGAACAAGGAGAAGGAGAGGAAC	60.307	52.174	0.00	0.00	0.00	3.62
1762	9010	2.631384	TCCAAGTCCAATCTCCCTTGA	58.369	47.619	0.00	0.00	37.14	3.02
1785	9033	2.715737	TGCAAAAAGTAATGGCGACC	57.284	45.000	0.00	0.00	0.00	4.79
1908	9159	4.615452	CGTGTTCCTTAGACCTGTAGTGAC	60.615	50.000	0.00	0.00	0.00	3.67
2026	9288	3.836365	TCAGACAAATCCGGCATATGA	57.164	42.857	6.97	0.00	0.00	2.15
2030	9292	1.949525	ACAAATCCGGCATATGAGCAC	59.050	47.619	6.97	0.00	35.83	4.40
2196	9466	0.798771	GAGTTCGCCAGCTAGTCGTG	60.799	60.000	0.00	0.00	0.00	4.35
2230	9500	8.269424	CGTATATTTCTCTGTGCATTAGTTGTC	58.731	37.037	0.00	0.00	0.00	3.18
2240	9510	7.979537	TCTGTGCATTAGTTGTCTCGTATATTT	59.020	33.333	0.00	0.00	0.00	1.40
2271	9541	4.019174	CTGCCTTCCCTGTCATGTTAAAT	58.981	43.478	0.00	0.00	0.00	1.40
2297	9569	6.003950	CCTTTTCCAGTGGTTATCAAGAAGA	58.996	40.000	9.54	0.00	0.00	2.87
2316	9589	8.733458	CAAGAAGAACATGTAATCTTGATCCAA	58.267	33.333	27.57	0.00	46.16	3.53
2317	9590	8.868522	AGAAGAACATGTAATCTTGATCCAAA	57.131	30.769	15.82	0.00	36.08	3.28
2322	9595	7.472334	ACATGTAATCTTGATCCAAAAAGCT	57.528	32.000	0.00	0.00	0.00	3.74
2327	9610	3.565307	TCTTGATCCAAAAAGCTGGTGT	58.435	40.909	0.00	0.00	37.74	4.16
2402	9696	3.189287	CAGAAGTCCAATGTTGTAGGTGC	59.811	47.826	0.00	0.00	0.00	5.01
2414	9765	1.151908	TAGGTGCGCCCCTGTTTTT	59.848	52.632	22.71	0.00	35.97	1.94
2420	9771	0.246360	GCGCCCCTGTTTTTAAGCAT	59.754	50.000	0.00	0.00	0.00	3.79
2421	9772	1.994916	CGCCCCTGTTTTTAAGCATG	58.005	50.000	0.00	0.00	0.00	4.06
2427	9778	4.202305	CCCCTGTTTTTAAGCATGGTTGAA	60.202	41.667	20.13	15.16	0.00	2.69
2442	9793	3.244976	GGTTGAATGCTGTCAATTTCGG	58.755	45.455	6.02	0.00	39.61	4.30
2446	9797	3.567585	TGAATGCTGTCAATTTCGGTGAA	59.432	39.130	0.00	0.00	0.00	3.18
2447	9798	4.037327	TGAATGCTGTCAATTTCGGTGAAA	59.963	37.500	0.00	0.00	35.94	2.69
2449	9800	3.963665	TGCTGTCAATTTCGGTGAAAAG	58.036	40.909	0.00	0.00	35.11	2.27
2450	9801	2.726241	GCTGTCAATTTCGGTGAAAAGC	59.274	45.455	0.00	0.00	35.11	3.51
2451	9802	3.308530	CTGTCAATTTCGGTGAAAAGCC	58.691	45.455	0.00	0.00	35.11	4.35
2457	9808	2.281900	CGGTGAAAAGCCGGGGAA	60.282	61.111	2.18	0.00	44.98	3.97
2458	9809	1.899534	CGGTGAAAAGCCGGGGAAA	60.900	57.895	2.18	0.00	44.98	3.13
2459	9810	1.862602	CGGTGAAAAGCCGGGGAAAG	61.863	60.000	2.18	0.00	44.98	2.62
2460	9811	1.289066	GTGAAAAGCCGGGGAAAGC	59.711	57.895	2.18	0.00	0.00	3.51
2462	9813	1.289066	GAAAAGCCGGGGAAAGCAC	59.711	57.895	2.18	0.00	0.00	4.40
2463	9814	2.472232	GAAAAGCCGGGGAAAGCACG	62.472	60.000	2.18	0.00	0.00	5.34
2487	9839	0.040058	AATGCAATGCAGACAGGGGA	59.960	50.000	14.98	0.00	43.65	4.81
2557	9909	1.681793	TGATACCCTAGCTGCTTCGAC	59.318	52.381	7.79	0.00	0.00	4.20
2567	9919	1.429463	CTGCTTCGACCCTGTTACAC	58.571	55.000	0.00	0.00	0.00	2.90
2572	9945	0.971386	TCGACCCTGTTACACTTCCC	59.029	55.000	0.00	0.00	0.00	3.97
2574	9947	1.346722	CGACCCTGTTACACTTCCCTT	59.653	52.381	0.00	0.00	0.00	3.95
2602	9975	6.260050	GGGTATCAGAATCGAAACATTTAGCA	59.740	38.462	0.00	0.00	0.00	3.49
2607	9980	6.595326	TCAGAATCGAAACATTTAGCAGTGAT	59.405	34.615	0.00	0.00	0.00	3.06
2620	9993	6.925610	TTAGCAGTGATCACATTATTGTCC	57.074	37.500	27.02	5.30	32.34	4.02
2657	10030	4.397417	AGTTTGCATGAAAGCAGAGGATAC	59.603	41.667	2.80	0.00	46.54	2.24
2660	10033	3.181462	TGCATGAAAGCAGAGGATACGAT	60.181	43.478	0.00	0.00	40.11	3.73
2713	10086	7.595130	TCATCATCAGAGTAAATATGTACACGC	59.405	37.037	5.84	0.00	0.00	5.34
2719	10092	1.084935	AAATATGTACACGCGCGGCA	61.085	50.000	35.22	25.11	0.00	5.69
2764	10138	1.792006	AACTAGGTGCTTTTCGACGG	58.208	50.000	0.00	0.00	0.00	4.79
2804	10178	2.631418	CACAATGGCTTTGAGCAGAG	57.369	50.000	18.73	0.00	44.75	3.35
2819	10193	2.668550	GAGGTGCGTGTGGGGTTC	60.669	66.667	0.00	0.00	0.00	3.62
2854	10228	8.655970	GCCAATGGTTCATTTTACAAATTAGTC	58.344	33.333	0.00	0.00	31.05	2.59

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	8.748412	CCCTTAATGATTTTGGTGTATTGAAGA	58.252	33.333	0.00	0.00	0.00	2.87
12	13	7.981225	CCCCTTAATGATTTTGGTGTATTGAAG	59.019	37.037	0.00	0.00	0.00	3.02
13	14	7.580495	GCCCCTTAATGATTTTGGTGTATTGAA	60.580	37.037	0.00	0.00	0.00	2.69
14	15	6.127196	GCCCCTTAATGATTTTGGTGTATTGA	60.127	38.462	0.00	0.00	0.00	2.57
15	16	6.048509	GCCCCTTAATGATTTTGGTGTATTG	58.951	40.000	0.00	0.00	0.00	1.90
16	17	5.723887	TGCCCCTTAATGATTTTGGTGTATT	59.276	36.000	0.00	0.00	0.00	1.89
18	19	4.464597	GTGCCCCTTAATGATTTTGGTGTA	59.535	41.667	0.00	0.00	0.00	2.90
19	20	3.260632	GTGCCCCTTAATGATTTTGGTGT	59.739	43.478	0.00	0.00	0.00	4.16
24	25	6.966534	CATCTAGTGCCCCTTAATGATTTT	57.033	37.500	0.00	0.00	0.00	1.82
39	40	5.098893	GTGAGAGTGTAAGTGCATCTAGTG	58.901	45.833	0.00	0.00	0.00	2.74
40	41	4.142578	CGTGAGAGTGTAAGTGCATCTAGT	60.143	45.833	0.00	0.00	0.00	2.57
41	42	4.142578	ACGTGAGAGTGTAAGTGCATCTAG	60.143	45.833	0.00	0.00	0.00	2.43
42	43	3.756963	ACGTGAGAGTGTAAGTGCATCTA	59.243	43.478	0.00	0.00	0.00	1.98
44	45	2.947852	ACGTGAGAGTGTAAGTGCATC	58.052	47.619	0.00	0.00	0.00	3.91
46	47	2.882927	AACGTGAGAGTGTAAGTGCA	57.117	45.000	0.00	0.00	0.00	4.57
47	48	4.684703	ACATTAACGTGAGAGTGTAAGTGC	59.315	41.667	0.00	0.00	0.00	4.40
49	50	9.947669	GATATACATTAACGTGAGAGTGTAAGT	57.052	33.333	0.00	0.00	0.00	2.24
50	51	9.946165	TGATATACATTAACGTGAGAGTGTAAG	57.054	33.333	0.00	0.00	0.00	2.34
53	54	8.630037	TGATGATATACATTAACGTGAGAGTGT	58.370	33.333	0.00	0.00	39.56	3.55
55	56	9.847706	GATGATGATATACATTAACGTGAGAGT	57.152	33.333	0.00	0.00	39.56	3.24
56	57	9.846248	TGATGATGATATACATTAACGTGAGAG	57.154	33.333	0.00	0.00	39.56	3.20
73	3560	8.492673	ACGTATGTGTAAAGTTTGATGATGAT	57.507	30.769	0.00	0.00	0.00	2.45
112	3599	7.789341	TGTAAAAATAATCGCACATGTTCAC	57.211	32.000	0.00	0.00	0.00	3.18
140	3627	9.450807	AAATTCACATTTCGAAGTTTCAGTAAG	57.549	29.630	0.00	0.00	26.84	2.34
141	3628	9.796120	AAAATTCACATTTCGAAGTTTCAGTAA	57.204	25.926	0.00	0.00	36.28	2.24
144	3632	8.338985	TCAAAATTCACATTTCGAAGTTTCAG	57.661	30.769	0.00	0.00	38.26	3.02
223	3711	4.091453	CGGTTTTCATTTACGGAATGCT	57.909	40.909	8.43	0.00	43.93	3.79
304	3794	2.009774	CCGAAGCCTGAAACGAATCAT	58.990	47.619	0.00	0.00	0.00	2.45
305	3795	1.270625	ACCGAAGCCTGAAACGAATCA	60.271	47.619	0.00	0.00	0.00	2.57
328	3818	3.573538	TCATTCACAACACTGATTTGGGG	59.426	43.478	0.00	0.00	0.00	4.96
376	3866	1.882623	CTTCTGTTTGAAGGCCCTCAC	59.117	52.381	2.67	0.00	46.25	3.51
387	3877	2.034558	ACGTTGATTGGGCTTCTGTTTG	59.965	45.455	0.00	0.00	0.00	2.93
486	3985	4.569023	CAGAGTATGCGCCGCCGA	62.569	66.667	6.63	0.00	36.29	5.54
623	4122	0.250553	TCGAAAATGTTGGCGTCCCT	60.251	50.000	0.00	0.00	0.00	4.20
664	4164	2.084681	GGCGAACGTCGACGACATT	61.085	57.895	41.52	26.49	43.74	2.71
984	4536	0.322975	ACATCGGCTTGTGCTTCTCT	59.677	50.000	0.00	0.00	39.59	3.10
1157	4724	2.970324	GCACCTTGTTGCGACCGA	60.970	61.111	0.45	0.00	31.51	4.69
1306	4897	1.212751	GGCCGAAGAATTGTGCCAC	59.787	57.895	0.00	0.00	40.18	5.01
1546	8746	0.250234	TCCGTTTCATCCTCTGCTGG	59.750	55.000	0.00	0.00	0.00	4.85
1596	8844	3.835779	CTGGAGATCATATCTGTCTGCG	58.164	50.000	0.00	0.00	40.38	5.18
1762	9010	4.048504	GTCGCCATTACTTTTTGCAAACT	58.951	39.130	12.39	0.00	0.00	2.66
1886	9137	4.280174	TGTCACTACAGGTCTAAGGAACAC	59.720	45.833	0.00	0.00	0.00	3.32
1908	9159	8.923683	CATATATGCATAAGACTGACAAGAGTG	58.076	37.037	11.13	0.00	0.00	3.51
1960	9215	3.347216	ACGAGACAAAAGCAAGGCATAT	58.653	40.909	0.00	0.00	0.00	1.78
2026	9288	1.911357	TCCATGAGGAGACAATGTGCT	59.089	47.619	0.00	0.00	39.61	4.40
2030	9292	4.160642	TCCATTCCATGAGGAGACAATG	57.839	45.455	0.00	0.00	46.74	2.82
2196	9466	6.094061	GCACAGAGAAATATACGAGGATACC	58.906	44.000	0.00	0.00	37.17	2.73
2271	9541	5.947663	TCTTGATAACCACTGGAAAAGGAA	58.052	37.500	0.71	0.00	0.00	3.36
2297	9569	7.816031	CAGCTTTTTGGATCAAGATTACATGTT	59.184	33.333	2.30	0.00	0.00	2.71
2316	9589	3.055891	AGAACAGCAAAACACCAGCTTTT	60.056	39.130	0.00	0.00	36.26	2.27
2317	9590	2.497273	AGAACAGCAAAACACCAGCTTT	59.503	40.909	0.00	0.00	36.26	3.51
2322	9595	2.426738	CAAGGAGAACAGCAAAACACCA	59.573	45.455	0.00	0.00	0.00	4.17
2327	9610	1.682854	CAGCCAAGGAGAACAGCAAAA	59.317	47.619	0.00	0.00	0.00	2.44
2353	9637	0.106967	GACCTTCCTCTCCCATTGGC	60.107	60.000	0.00	0.00	0.00	4.52
2356	9640	0.042731	TCCGACCTTCCTCTCCCATT	59.957	55.000	0.00	0.00	0.00	3.16
2402	9696	1.404047	CCATGCTTAAAAACAGGGGCG	60.404	52.381	0.00	0.00	34.14	6.13
2420	9771	3.305267	CCGAAATTGACAGCATTCAACCA	60.305	43.478	2.38	0.00	38.31	3.67
2421	9772	3.244976	CCGAAATTGACAGCATTCAACC	58.755	45.455	2.38	0.00	38.31	3.77
2427	9778	4.549458	CTTTTCACCGAAATTGACAGCAT	58.451	39.130	0.00	0.00	31.34	3.79
2442	9793	1.289066	GCTTTCCCCGGCTTTTCAC	59.711	57.895	0.00	0.00	0.00	3.18
2446	9797	2.983592	CGTGCTTTCCCCGGCTTT	60.984	61.111	0.00	0.00	0.00	3.51
2450	9801	3.361977	CAACCGTGCTTTCCCCGG	61.362	66.667	0.00	0.00	46.93	5.73
2451	9802	1.241315	ATTCAACCGTGCTTTCCCCG	61.241	55.000	0.00	0.00	0.00	5.73
2453	9804	0.388520	GCATTCAACCGTGCTTTCCC	60.389	55.000	0.00	0.00	38.30	3.97
2454	9805	0.313672	TGCATTCAACCGTGCTTTCC	59.686	50.000	0.00	0.00	41.78	3.13
2456	9807	2.406130	CATTGCATTCAACCGTGCTTT	58.594	42.857	0.00	0.00	41.78	3.51
2457	9808	1.936203	GCATTGCATTCAACCGTGCTT	60.936	47.619	3.15	0.00	41.78	3.91
2458	9809	0.388907	GCATTGCATTCAACCGTGCT	60.389	50.000	3.15	0.00	41.78	4.40
2459	9810	0.666880	TGCATTGCATTCAACCGTGC	60.667	50.000	7.38	0.00	41.61	5.34
2460	9811	1.068402	TCTGCATTGCATTCAACCGTG	60.068	47.619	12.53	0.00	38.13	4.94
2462	9813	1.068402	TGTCTGCATTGCATTCAACCG	60.068	47.619	12.53	0.00	38.13	4.44
2463	9814	2.602878	CTGTCTGCATTGCATTCAACC	58.397	47.619	12.53	0.00	38.13	3.77
2526	9878	5.300034	CAGCTAGGGTATCAATTGATTGCAA	59.700	40.000	25.26	0.00	37.68	4.08
2542	9894	2.060980	AGGGTCGAAGCAGCTAGGG	61.061	63.158	0.00	0.00	0.00	3.53
2557	9909	2.290323	CCAGAAGGGAAGTGTAACAGGG	60.290	54.545	0.00	0.00	38.16	4.45
2602	9975	8.985315	AACATATGGACAATAATGTGATCACT	57.015	30.769	25.55	9.97	40.74	3.41
2607	9980	8.750515	ACATGAACATATGGACAATAATGTGA	57.249	30.769	7.80	0.00	40.74	3.58
2620	9993	6.806120	CATGCAAACTGACATGAACATATG	57.194	37.500	0.00	0.00	45.23	1.78
2657	10030	2.680312	ACAGGTGGAGTGATGAATCG	57.320	50.000	0.00	0.00	0.00	3.34
2660	10033	3.576078	ACAAACAGGTGGAGTGATGAA	57.424	42.857	0.00	0.00	0.00	2.57
2719	10092	6.097839	TCCTCAAGTTAGAGCATACGGTTTAT	59.902	38.462	0.00	0.00	34.26	1.40
2764	10138	1.602191	CAATCGCGCCAAGTTACAAC	58.398	50.000	0.00	0.00	0.00	3.32
2804	10178	1.901464	ATTGAACCCCACACGCACC	60.901	57.895	0.00	0.00	0.00	5.01
2809	10183	0.678950	CCAACCATTGAACCCCACAC	59.321	55.000	0.00	0.00	0.00	3.82
2835	10209	8.296713	TCCTGCAGACTAATTTGTAAAATGAAC	58.703	33.333	17.39	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.