Multiple sequence alignment - TraesCS1B01G398800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G398800 chr1B 100.000 3981 0 0 1 3981 629943630 629939650 0.000000e+00 7352
1 TraesCS1B01G398800 chr1B 93.091 550 32 3 1 550 456431447 456431990 0.000000e+00 800
2 TraesCS1B01G398800 chr1B 92.015 551 37 3 1 551 90268753 90269296 0.000000e+00 767
3 TraesCS1B01G398800 chr1A 91.947 1726 86 23 551 2266 550972522 550970840 0.000000e+00 2368
4 TraesCS1B01G398800 chr1A 87.435 581 33 23 2785 3355 550970232 550969682 2.020000e-177 632
5 TraesCS1B01G398800 chr1D 94.895 1097 46 6 1109 2204 458486192 458485105 0.000000e+00 1707
6 TraesCS1B01G398800 chr1D 92.396 434 19 9 2819 3240 458484254 458483823 1.220000e-169 606
7 TraesCS1B01G398800 chr1D 86.617 538 40 12 578 1100 458487104 458486584 2.080000e-157 566
8 TraesCS1B01G398800 chr7D 94.909 550 25 1 1 550 45127303 45126757 0.000000e+00 857
9 TraesCS1B01G398800 chr3A 84.813 856 122 7 1039 1893 487855117 487854269 0.000000e+00 854
10 TraesCS1B01G398800 chr3B 84.229 856 127 7 1039 1893 476946189 476945341 0.000000e+00 826
11 TraesCS1B01G398800 chr3D 83.897 857 128 9 1039 1893 365906973 365906125 0.000000e+00 809
12 TraesCS1B01G398800 chr4B 93.161 541 33 2 11 550 38636525 38635988 0.000000e+00 791
13 TraesCS1B01G398800 chr4B 90.182 550 52 1 1 550 498925212 498924665 0.000000e+00 715
14 TraesCS1B01G398800 chr6B 91.833 551 40 2 1 551 25970890 25970345 0.000000e+00 763
15 TraesCS1B01G398800 chr6B 90.563 551 45 3 1 550 695268833 695268289 0.000000e+00 723
16 TraesCS1B01G398800 chr6B 90.200 551 46 4 1 551 679767957 679768499 0.000000e+00 712
17 TraesCS1B01G398800 chr7B 90.727 550 45 2 1 550 639678253 639678796 0.000000e+00 728
18 TraesCS1B01G398800 chr7B 91.218 353 19 3 3632 3972 531437227 531436875 1.670000e-128 470
19 TraesCS1B01G398800 chr7B 95.652 46 2 0 3563 3608 531437390 531437345 1.530000e-09 75
20 TraesCS1B01G398800 chr4A 90.962 343 19 3 3632 3962 456323029 456322687 6.070000e-123 451
21 TraesCS1B01G398800 chr4A 90.671 343 20 3 3632 3962 457555688 457555346 2.820000e-121 446
22 TraesCS1B01G398800 chr2D 81.285 358 35 20 3632 3962 42875105 42875457 1.100000e-65 261
23 TraesCS1B01G398800 chr7A 80.588 340 35 11 3658 3972 127455566 127455233 2.390000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G398800 chr1B 629939650 629943630 3980 True 7352.000000 7352 100.000000 1 3981 1 chr1B.!!$R1 3980
1 TraesCS1B01G398800 chr1B 456431447 456431990 543 False 800.000000 800 93.091000 1 550 1 chr1B.!!$F2 549
2 TraesCS1B01G398800 chr1B 90268753 90269296 543 False 767.000000 767 92.015000 1 551 1 chr1B.!!$F1 550
3 TraesCS1B01G398800 chr1A 550969682 550972522 2840 True 1500.000000 2368 89.691000 551 3355 2 chr1A.!!$R1 2804
4 TraesCS1B01G398800 chr1D 458483823 458487104 3281 True 959.666667 1707 91.302667 578 3240 3 chr1D.!!$R1 2662
5 TraesCS1B01G398800 chr7D 45126757 45127303 546 True 857.000000 857 94.909000 1 550 1 chr7D.!!$R1 549
6 TraesCS1B01G398800 chr3A 487854269 487855117 848 True 854.000000 854 84.813000 1039 1893 1 chr3A.!!$R1 854
7 TraesCS1B01G398800 chr3B 476945341 476946189 848 True 826.000000 826 84.229000 1039 1893 1 chr3B.!!$R1 854
8 TraesCS1B01G398800 chr3D 365906125 365906973 848 True 809.000000 809 83.897000 1039 1893 1 chr3D.!!$R1 854
9 TraesCS1B01G398800 chr4B 38635988 38636525 537 True 791.000000 791 93.161000 11 550 1 chr4B.!!$R1 539
10 TraesCS1B01G398800 chr4B 498924665 498925212 547 True 715.000000 715 90.182000 1 550 1 chr4B.!!$R2 549
11 TraesCS1B01G398800 chr6B 25970345 25970890 545 True 763.000000 763 91.833000 1 551 1 chr6B.!!$R1 550
12 TraesCS1B01G398800 chr6B 695268289 695268833 544 True 723.000000 723 90.563000 1 550 1 chr6B.!!$R2 549
13 TraesCS1B01G398800 chr6B 679767957 679768499 542 False 712.000000 712 90.200000 1 551 1 chr6B.!!$F1 550
14 TraesCS1B01G398800 chr7B 639678253 639678796 543 False 728.000000 728 90.727000 1 550 1 chr7B.!!$F1 549
15 TraesCS1B01G398800 chr7B 531436875 531437390 515 True 272.500000 470 93.435000 3563 3972 2 chr7B.!!$R1 409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 92 0.957395 CTGCCCTAGTGTGCTTGTGG 60.957 60.000 0.0 0.0 0.00 4.17 F
1317 1747 1.390125 CCTCTGGGACCTCTCCACT 59.610 63.158 0.0 0.0 38.52 4.00 F
1872 2302 0.689623 AGGACCTCAAGCCAGAAGTG 59.310 55.000 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 2014 0.250467 GGAGCTTGCAGTTGGTGAGA 60.250 55.0 0.0 0.0 0.00 3.27 R
2222 2653 0.249447 TGTGAGCACAGAAGTCACGG 60.249 55.0 0.0 0.0 42.98 4.94 R
3378 4268 0.320374 CCCAAACGGTACAGAGAGCA 59.680 55.0 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 92 0.957395 CTGCCCTAGTGTGCTTGTGG 60.957 60.000 0.00 0.00 0.00 4.17
111 116 2.369860 ACATGGCAACTCTCTCAACTGA 59.630 45.455 0.00 0.00 37.61 3.41
169 175 1.625315 TCATGGCAACTGCAGTAGACT 59.375 47.619 22.01 0.19 44.36 3.24
173 179 3.099905 TGGCAACTGCAGTAGACTAGAT 58.900 45.455 22.01 0.00 44.36 1.98
186 192 7.609960 CAGTAGACTAGATCATACATGGCAAT 58.390 38.462 0.00 0.00 0.00 3.56
188 194 9.314133 AGTAGACTAGATCATACATGGCAATTA 57.686 33.333 0.00 0.00 0.00 1.40
355 362 2.625639 CCATAAGGTAGGAGGCCTGAT 58.374 52.381 12.00 0.00 36.30 2.90
390 397 2.222027 GCGCTATCTATTTTGCCCACT 58.778 47.619 0.00 0.00 0.00 4.00
494 505 2.673368 GCTGATCCTCTTAAACACCACG 59.327 50.000 0.00 0.00 0.00 4.94
559 570 4.143473 CGTTGTCGGCGTCCATATTATTAC 60.143 45.833 6.85 0.00 0.00 1.89
572 583 7.589954 GTCCATATTATTACGCACAAATTGACC 59.410 37.037 0.00 0.00 0.00 4.02
573 584 6.577055 CCATATTATTACGCACAAATTGACCG 59.423 38.462 0.00 4.31 0.00 4.79
608 619 8.693625 TGTATAAAATCATCACATTGCCATGAA 58.306 29.630 4.52 0.00 34.11 2.57
661 675 9.558396 TTTTCCATAATTTTGCAACTTTCAGAT 57.442 25.926 0.00 0.00 0.00 2.90
700 717 7.288810 ACACACAGAACAATAACATCCAAAT 57.711 32.000 0.00 0.00 0.00 2.32
703 720 7.539710 CACACAGAACAATAACATCCAAATCAG 59.460 37.037 0.00 0.00 0.00 2.90
705 722 8.464404 CACAGAACAATAACATCCAAATCAGAT 58.536 33.333 0.00 0.00 0.00 2.90
716 735 7.173722 ACATCCAAATCAGATCTTTTCTCACT 58.826 34.615 0.00 0.00 29.93 3.41
728 747 8.210265 AGATCTTTTCTCACTCCTAAATCATCC 58.790 37.037 0.00 0.00 0.00 3.51
729 748 6.341316 TCTTTTCTCACTCCTAAATCATCCG 58.659 40.000 0.00 0.00 0.00 4.18
730 749 3.735237 TCTCACTCCTAAATCATCCGC 57.265 47.619 0.00 0.00 0.00 5.54
731 750 3.031013 TCTCACTCCTAAATCATCCGCA 58.969 45.455 0.00 0.00 0.00 5.69
733 752 4.081142 TCTCACTCCTAAATCATCCGCAAA 60.081 41.667 0.00 0.00 0.00 3.68
734 753 4.584874 TCACTCCTAAATCATCCGCAAAA 58.415 39.130 0.00 0.00 0.00 2.44
735 754 5.007034 TCACTCCTAAATCATCCGCAAAAA 58.993 37.500 0.00 0.00 0.00 1.94
879 925 1.489560 AAACCCTAGCCGCACCTTCT 61.490 55.000 0.00 0.00 0.00 2.85
899 945 6.239743 CCTTCTCCAGACTATAAAATCCTCCC 60.240 46.154 0.00 0.00 0.00 4.30
1317 1747 1.390125 CCTCTGGGACCTCTCCACT 59.610 63.158 0.00 0.00 38.52 4.00
1872 2302 0.689623 AGGACCTCAAGCCAGAAGTG 59.310 55.000 0.00 0.00 0.00 3.16
1909 2339 3.279434 CAGGTAACCTGCTTGTTATCCC 58.721 50.000 0.00 2.94 45.13 3.85
1911 2341 3.200165 AGGTAACCTGCTTGTTATCCCTC 59.800 47.826 5.83 0.00 33.22 4.30
1983 2413 1.268234 GCGTCACTGGATATTTGCTGC 60.268 52.381 0.00 0.00 0.00 5.25
1999 2429 1.268743 GCTGCGATAGTTCCATTTGGC 60.269 52.381 0.00 0.00 39.35 4.52
2002 2432 0.944386 CGATAGTTCCATTTGGCCCG 59.056 55.000 0.00 0.00 34.44 6.13
2017 2447 1.472728 GGCCCGATCTTAACATGACGT 60.473 52.381 0.00 0.00 0.00 4.34
2068 2498 8.036575 TCTTACTAGTTAATTGTACCGTGCAAT 58.963 33.333 8.86 8.86 38.09 3.56
2118 2548 6.845302 TCACTAATCGTTAAGTACATCGTGT 58.155 36.000 0.00 0.00 0.00 4.49
2127 2557 6.074729 CGTTAAGTACATCGTGTTGAAAGTGA 60.075 38.462 0.00 0.00 0.00 3.41
2187 2618 8.594687 GTGTTGGTTTGCATTATAATGTGATTC 58.405 33.333 23.14 12.82 38.65 2.52
2201 2632 5.833406 ATGTGATTCGATTGGCAATTGTA 57.167 34.783 23.37 16.48 0.00 2.41
2202 2633 4.980590 TGTGATTCGATTGGCAATTGTAC 58.019 39.130 23.37 18.01 0.00 2.90
2203 2634 4.699735 TGTGATTCGATTGGCAATTGTACT 59.300 37.500 23.37 11.65 0.00 2.73
2204 2635 5.030295 GTGATTCGATTGGCAATTGTACTG 58.970 41.667 23.37 7.12 0.00 2.74
2210 2641 1.255882 TGGCAATTGTACTGGCTTGG 58.744 50.000 7.40 0.00 39.94 3.61
2257 2688 5.583854 GTGCTCACATGAATCTAGTGTTGAT 59.416 40.000 0.00 0.00 34.94 2.57
2311 2902 1.655099 GTGTTGTGCTTGCTTGTTGTG 59.345 47.619 0.00 0.00 0.00 3.33
2321 2912 2.637947 TGCTTGTTGTGCACTGAACTA 58.362 42.857 19.41 10.76 35.31 2.24
2332 2923 5.656859 TGTGCACTGAACTATCTATGGTAGT 59.343 40.000 19.41 0.00 33.98 2.73
2344 2935 6.732896 ATCTATGGTAGTTACCCTTGTGAG 57.267 41.667 5.90 0.00 45.87 3.51
2345 2936 5.586877 TCTATGGTAGTTACCCTTGTGAGT 58.413 41.667 5.90 0.00 45.87 3.41
2346 2937 6.734532 TCTATGGTAGTTACCCTTGTGAGTA 58.265 40.000 5.90 0.00 45.87 2.59
2347 2938 7.359849 TCTATGGTAGTTACCCTTGTGAGTAT 58.640 38.462 5.90 0.00 45.87 2.12
2432 3025 5.376625 TGCTGTTCAGTTCCATCTTTAAGT 58.623 37.500 1.78 0.00 0.00 2.24
2434 3027 6.321181 TGCTGTTCAGTTCCATCTTTAAGTTT 59.679 34.615 1.78 0.00 0.00 2.66
2485 3078 5.889853 AGAAACATGATGCTGTTATGTCCAT 59.110 36.000 0.00 0.00 38.38 3.41
2528 3125 8.077991 AGATGTTTGTCATATGTGTCAAAAGTG 58.922 33.333 14.36 0.00 42.21 3.16
2547 3144 3.560068 AGTGTTCTTTTTAGTGACCTGCG 59.440 43.478 0.00 0.00 0.00 5.18
2582 3186 4.096231 TGTTGTGTCTTGTTGATCCTGTTG 59.904 41.667 0.00 0.00 0.00 3.33
2587 3191 5.527582 GTGTCTTGTTGATCCTGTTGTACTT 59.472 40.000 0.00 0.00 0.00 2.24
2618 3222 7.906611 TGAATGTAATTTCGTTTTGACAGTG 57.093 32.000 0.00 0.00 36.07 3.66
2628 3232 8.596271 TTTCGTTTTGACAGTGTATATTCTCA 57.404 30.769 0.00 0.00 0.00 3.27
2657 3261 7.104326 CAATTGTGCAAGTATTTGTTACACC 57.896 36.000 8.80 0.00 35.10 4.16
2671 3275 2.078849 TACACCGTCTGCAATCTGTG 57.921 50.000 9.54 9.54 0.00 3.66
2682 3289 5.641209 GTCTGCAATCTGTGTAATCTTCTGT 59.359 40.000 0.00 0.00 0.00 3.41
2683 3290 6.148480 GTCTGCAATCTGTGTAATCTTCTGTT 59.852 38.462 0.00 0.00 0.00 3.16
2712 3319 6.398234 GAGGATCTGCACTCTTGTAATCTA 57.602 41.667 0.00 0.00 0.00 1.98
2713 3320 6.798427 AGGATCTGCACTCTTGTAATCTAA 57.202 37.500 0.00 0.00 0.00 2.10
2715 3322 7.624549 AGGATCTGCACTCTTGTAATCTAAAA 58.375 34.615 0.00 0.00 0.00 1.52
2717 3324 8.897752 GGATCTGCACTCTTGTAATCTAAAATT 58.102 33.333 0.00 0.00 0.00 1.82
2723 3330 9.118236 GCACTCTTGTAATCTAAAATTGTTCAC 57.882 33.333 0.00 0.00 0.00 3.18
2743 3350 9.616156 TGTTCACTAAACCACTCTATTTTACAA 57.384 29.630 0.00 0.00 37.03 2.41
2773 3380 2.872245 CCTGTCAACTGTACACTTGTGG 59.128 50.000 12.98 10.56 0.00 4.17
2776 3383 3.196901 TGTCAACTGTACACTTGTGGTCT 59.803 43.478 12.98 0.00 0.00 3.85
2778 3385 4.034048 GTCAACTGTACACTTGTGGTCTTG 59.966 45.833 12.98 0.00 0.00 3.02
2781 3388 3.938963 ACTGTACACTTGTGGTCTTGTTG 59.061 43.478 5.72 0.00 0.00 3.33
2784 3391 4.393680 TGTACACTTGTGGTCTTGTTGAAC 59.606 41.667 5.72 0.00 0.00 3.18
2795 3402 6.421202 GTGGTCTTGTTGAACTTACAGTCTAG 59.579 42.308 0.00 0.00 32.49 2.43
2798 3667 7.494952 GGTCTTGTTGAACTTACAGTCTAGTTT 59.505 37.037 0.00 0.00 34.88 2.66
2995 3874 2.204074 TAGGGGTCTTGCTGGCCA 60.204 61.111 4.71 4.71 43.75 5.36
2996 3875 2.300967 TAGGGGTCTTGCTGGCCAG 61.301 63.158 29.34 29.34 43.75 4.85
3012 3891 2.019156 GCCAGAGAGGTTGTAATGCCC 61.019 57.143 0.00 0.00 40.61 5.36
3038 3917 3.620488 AGTTTTTGACTGTTCTGAGGCA 58.380 40.909 0.00 0.00 37.17 4.75
3175 4065 4.637483 TTGCTGCTTTCAATATACTGCC 57.363 40.909 0.00 0.00 0.00 4.85
3180 4070 5.731686 GCTGCTTTCAATATACTGCCAACTC 60.732 44.000 0.00 0.00 0.00 3.01
3198 4088 1.227380 CTTTAGCCGCGCCTGATCT 60.227 57.895 0.00 0.00 0.00 2.75
3208 4098 3.381045 CGCGCCTGATCTTATTTGTCTA 58.619 45.455 0.00 0.00 0.00 2.59
3225 4115 1.946768 TCTATGCGGGTTATTGCTTGC 59.053 47.619 0.00 0.00 0.00 4.01
3243 4133 1.206115 GCCGTTTGCGTTGTCTTTGG 61.206 55.000 0.00 0.00 36.15 3.28
3245 4135 0.593773 CGTTTGCGTTGTCTTTGGGG 60.594 55.000 0.00 0.00 0.00 4.96
3246 4136 0.741915 GTTTGCGTTGTCTTTGGGGA 59.258 50.000 0.00 0.00 0.00 4.81
3249 4139 2.570415 TGCGTTGTCTTTGGGGATTA 57.430 45.000 0.00 0.00 0.00 1.75
3256 4146 5.391950 CGTTGTCTTTGGGGATTACTGATTG 60.392 44.000 0.00 0.00 0.00 2.67
3257 4147 5.255397 TGTCTTTGGGGATTACTGATTGT 57.745 39.130 0.00 0.00 0.00 2.71
3258 4148 5.640147 TGTCTTTGGGGATTACTGATTGTT 58.360 37.500 0.00 0.00 0.00 2.83
3259 4149 5.710099 TGTCTTTGGGGATTACTGATTGTTC 59.290 40.000 0.00 0.00 0.00 3.18
3260 4150 5.946377 GTCTTTGGGGATTACTGATTGTTCT 59.054 40.000 0.00 0.00 0.00 3.01
3261 4151 6.434340 GTCTTTGGGGATTACTGATTGTTCTT 59.566 38.462 0.00 0.00 0.00 2.52
3262 4152 7.010160 TCTTTGGGGATTACTGATTGTTCTTT 58.990 34.615 0.00 0.00 0.00 2.52
3263 4153 6.588719 TTGGGGATTACTGATTGTTCTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3264 4154 4.462483 TGGGGATTACTGATTGTTCTTTGC 59.538 41.667 0.00 0.00 0.00 3.68
3265 4155 4.462483 GGGGATTACTGATTGTTCTTTGCA 59.538 41.667 0.00 0.00 0.00 4.08
3266 4156 5.127682 GGGGATTACTGATTGTTCTTTGCAT 59.872 40.000 0.00 0.00 0.00 3.96
3267 4157 6.351286 GGGGATTACTGATTGTTCTTTGCATT 60.351 38.462 0.00 0.00 0.00 3.56
3268 4158 7.147915 GGGGATTACTGATTGTTCTTTGCATTA 60.148 37.037 0.00 0.00 0.00 1.90
3269 4159 8.416329 GGGATTACTGATTGTTCTTTGCATTAT 58.584 33.333 0.00 0.00 0.00 1.28
3275 4165 7.095523 ACTGATTGTTCTTTGCATTATGTTTGC 60.096 33.333 0.00 0.00 40.55 3.68
3285 4175 3.500982 CATTATGTTTGCGAACTGTGGG 58.499 45.455 17.65 1.79 36.70 4.61
3286 4176 2.264005 TATGTTTGCGAACTGTGGGT 57.736 45.000 17.65 0.68 36.70 4.51
3297 4187 3.119637 CGAACTGTGGGTTGTTGTTTTCT 60.120 43.478 0.00 0.00 38.41 2.52
3310 4200 2.875296 TGTTTTCTGGTGATCCCCTTG 58.125 47.619 0.00 0.00 0.00 3.61
3311 4201 1.546029 GTTTTCTGGTGATCCCCTTGC 59.454 52.381 0.00 0.00 0.00 4.01
3331 4221 2.400399 CTGTCTTGCAGCATTTGTTGG 58.600 47.619 0.00 0.00 38.52 3.77
3355 4245 2.286872 CACTTTGCATGGAGGAGCTAG 58.713 52.381 0.00 0.00 0.00 3.42
3356 4246 1.307097 CTTTGCATGGAGGAGCTAGC 58.693 55.000 6.62 6.62 0.00 3.42
3357 4247 0.620030 TTTGCATGGAGGAGCTAGCA 59.380 50.000 18.83 0.00 0.00 3.49
3358 4248 0.841961 TTGCATGGAGGAGCTAGCAT 59.158 50.000 18.83 1.59 0.00 3.79
3359 4249 0.108019 TGCATGGAGGAGCTAGCATG 59.892 55.000 18.83 11.56 0.00 4.06
3360 4250 0.108207 GCATGGAGGAGCTAGCATGT 59.892 55.000 18.83 0.00 0.00 3.21
3361 4251 1.476471 GCATGGAGGAGCTAGCATGTT 60.476 52.381 18.83 0.00 0.00 2.71
3362 4252 2.492012 CATGGAGGAGCTAGCATGTTC 58.508 52.381 18.83 5.24 0.00 3.18
3363 4253 0.461548 TGGAGGAGCTAGCATGTTCG 59.538 55.000 18.83 0.00 0.00 3.95
3364 4254 0.878086 GGAGGAGCTAGCATGTTCGC 60.878 60.000 18.83 0.00 0.00 4.70
3365 4255 0.878086 GAGGAGCTAGCATGTTCGCC 60.878 60.000 18.83 6.20 0.00 5.54
3366 4256 1.889573 GGAGCTAGCATGTTCGCCC 60.890 63.158 18.83 0.89 0.00 6.13
3367 4257 1.144936 GAGCTAGCATGTTCGCCCT 59.855 57.895 18.83 0.00 0.00 5.19
3368 4258 1.153289 AGCTAGCATGTTCGCCCTG 60.153 57.895 18.83 0.00 0.00 4.45
3369 4259 1.450312 GCTAGCATGTTCGCCCTGT 60.450 57.895 10.63 0.00 0.00 4.00
3370 4260 1.026718 GCTAGCATGTTCGCCCTGTT 61.027 55.000 10.63 0.00 0.00 3.16
3371 4261 0.729116 CTAGCATGTTCGCCCTGTTG 59.271 55.000 0.00 0.00 0.00 3.33
3372 4262 0.323302 TAGCATGTTCGCCCTGTTGA 59.677 50.000 0.00 0.00 0.00 3.18
3373 4263 0.957395 AGCATGTTCGCCCTGTTGAG 60.957 55.000 0.00 0.00 0.00 3.02
3374 4264 1.503542 CATGTTCGCCCTGTTGAGC 59.496 57.895 0.00 0.00 0.00 4.26
3375 4265 1.073025 ATGTTCGCCCTGTTGAGCA 59.927 52.632 0.00 0.00 0.00 4.26
3376 4266 0.322816 ATGTTCGCCCTGTTGAGCAT 60.323 50.000 0.00 0.00 32.16 3.79
3377 4267 0.955428 TGTTCGCCCTGTTGAGCATC 60.955 55.000 0.00 0.00 0.00 3.91
3378 4268 0.674895 GTTCGCCCTGTTGAGCATCT 60.675 55.000 0.00 0.00 34.92 2.90
3379 4269 0.674581 TTCGCCCTGTTGAGCATCTG 60.675 55.000 0.00 0.00 34.92 2.90
3380 4270 2.758089 CGCCCTGTTGAGCATCTGC 61.758 63.158 0.00 0.00 42.49 4.26
3391 4281 3.264666 GCATCTGCTCTCTGTACCG 57.735 57.895 0.00 0.00 38.21 4.02
3392 4282 0.457851 GCATCTGCTCTCTGTACCGT 59.542 55.000 0.00 0.00 38.21 4.83
3393 4283 1.134965 GCATCTGCTCTCTGTACCGTT 60.135 52.381 0.00 0.00 38.21 4.44
3394 4284 2.675317 GCATCTGCTCTCTGTACCGTTT 60.675 50.000 0.00 0.00 38.21 3.60
3395 4285 2.724977 TCTGCTCTCTGTACCGTTTG 57.275 50.000 0.00 0.00 0.00 2.93
3396 4286 1.272490 TCTGCTCTCTGTACCGTTTGG 59.728 52.381 0.00 0.00 42.84 3.28
3397 4287 0.320374 TGCTCTCTGTACCGTTTGGG 59.680 55.000 0.00 0.00 40.75 4.12
3408 4298 1.961793 CCGTTTGGGTCTCTGTTTGA 58.038 50.000 0.00 0.00 0.00 2.69
3409 4299 2.504367 CCGTTTGGGTCTCTGTTTGAT 58.496 47.619 0.00 0.00 0.00 2.57
3410 4300 2.226437 CCGTTTGGGTCTCTGTTTGATG 59.774 50.000 0.00 0.00 0.00 3.07
3411 4301 2.878406 CGTTTGGGTCTCTGTTTGATGT 59.122 45.455 0.00 0.00 0.00 3.06
3412 4302 3.303990 CGTTTGGGTCTCTGTTTGATGTG 60.304 47.826 0.00 0.00 0.00 3.21
3413 4303 1.896220 TGGGTCTCTGTTTGATGTGC 58.104 50.000 0.00 0.00 0.00 4.57
3414 4304 1.168714 GGGTCTCTGTTTGATGTGCC 58.831 55.000 0.00 0.00 0.00 5.01
3415 4305 0.798776 GGTCTCTGTTTGATGTGCCG 59.201 55.000 0.00 0.00 0.00 5.69
3416 4306 1.512926 GTCTCTGTTTGATGTGCCGT 58.487 50.000 0.00 0.00 0.00 5.68
3417 4307 1.873591 GTCTCTGTTTGATGTGCCGTT 59.126 47.619 0.00 0.00 0.00 4.44
3418 4308 3.064207 GTCTCTGTTTGATGTGCCGTTA 58.936 45.455 0.00 0.00 0.00 3.18
3419 4309 3.496884 GTCTCTGTTTGATGTGCCGTTAA 59.503 43.478 0.00 0.00 0.00 2.01
3420 4310 3.745975 TCTCTGTTTGATGTGCCGTTAAG 59.254 43.478 0.00 0.00 0.00 1.85
3421 4311 2.225491 TCTGTTTGATGTGCCGTTAAGC 59.775 45.455 0.00 0.00 0.00 3.09
3422 4312 1.268352 TGTTTGATGTGCCGTTAAGCC 59.732 47.619 0.00 0.00 0.00 4.35
3423 4313 1.539827 GTTTGATGTGCCGTTAAGCCT 59.460 47.619 0.00 0.00 0.00 4.58
3424 4314 1.164411 TTGATGTGCCGTTAAGCCTG 58.836 50.000 0.00 0.00 0.00 4.85
3425 4315 0.323302 TGATGTGCCGTTAAGCCTGA 59.677 50.000 0.00 0.00 0.00 3.86
3426 4316 1.271108 TGATGTGCCGTTAAGCCTGAA 60.271 47.619 0.00 0.00 0.00 3.02
3427 4317 2.017049 GATGTGCCGTTAAGCCTGAAT 58.983 47.619 0.00 0.00 0.00 2.57
3428 4318 1.904287 TGTGCCGTTAAGCCTGAATT 58.096 45.000 0.00 0.00 0.00 2.17
3429 4319 2.235016 TGTGCCGTTAAGCCTGAATTT 58.765 42.857 0.00 0.00 0.00 1.82
3430 4320 3.413327 TGTGCCGTTAAGCCTGAATTTA 58.587 40.909 0.00 0.00 0.00 1.40
3431 4321 3.438781 TGTGCCGTTAAGCCTGAATTTAG 59.561 43.478 0.00 0.00 0.00 1.85
3432 4322 3.439129 GTGCCGTTAAGCCTGAATTTAGT 59.561 43.478 0.00 0.00 0.00 2.24
3433 4323 4.076394 TGCCGTTAAGCCTGAATTTAGTT 58.924 39.130 0.00 0.00 0.00 2.24
3434 4324 4.083003 TGCCGTTAAGCCTGAATTTAGTTG 60.083 41.667 0.00 0.00 0.00 3.16
3435 4325 4.674362 GCCGTTAAGCCTGAATTTAGTTGG 60.674 45.833 0.00 0.00 0.00 3.77
3436 4326 4.142469 CCGTTAAGCCTGAATTTAGTTGGG 60.142 45.833 0.00 0.00 0.00 4.12
3437 4327 4.674362 CGTTAAGCCTGAATTTAGTTGGGC 60.674 45.833 0.00 0.00 36.27 5.36
3438 4328 2.907458 AGCCTGAATTTAGTTGGGCT 57.093 45.000 0.00 0.00 39.40 5.19
3439 4329 3.175438 AGCCTGAATTTAGTTGGGCTT 57.825 42.857 0.00 0.00 40.52 4.35
3440 4330 2.827921 AGCCTGAATTTAGTTGGGCTTG 59.172 45.455 0.00 0.00 40.52 4.01
3441 4331 2.825532 GCCTGAATTTAGTTGGGCTTGA 59.174 45.455 0.00 0.00 34.42 3.02
3442 4332 3.367395 GCCTGAATTTAGTTGGGCTTGAC 60.367 47.826 0.00 0.00 34.42 3.18
3443 4333 3.826157 CCTGAATTTAGTTGGGCTTGACA 59.174 43.478 0.00 0.00 0.00 3.58
3444 4334 4.463891 CCTGAATTTAGTTGGGCTTGACAT 59.536 41.667 0.00 0.00 0.00 3.06
3445 4335 5.047092 CCTGAATTTAGTTGGGCTTGACATT 60.047 40.000 0.00 0.00 0.00 2.71
3446 4336 6.418057 TGAATTTAGTTGGGCTTGACATTT 57.582 33.333 0.00 0.00 0.00 2.32
3447 4337 6.825610 TGAATTTAGTTGGGCTTGACATTTT 58.174 32.000 0.00 0.00 0.00 1.82
3448 4338 6.705381 TGAATTTAGTTGGGCTTGACATTTTG 59.295 34.615 0.00 0.00 0.00 2.44
3449 4339 5.860941 TTTAGTTGGGCTTGACATTTTGA 57.139 34.783 0.00 0.00 0.00 2.69
3450 4340 5.860941 TTAGTTGGGCTTGACATTTTGAA 57.139 34.783 0.00 0.00 0.00 2.69
3451 4341 4.058721 AGTTGGGCTTGACATTTTGAAC 57.941 40.909 0.00 0.00 0.00 3.18
3452 4342 2.791383 TGGGCTTGACATTTTGAACG 57.209 45.000 0.00 0.00 0.00 3.95
3453 4343 1.269517 TGGGCTTGACATTTTGAACGC 60.270 47.619 0.00 0.00 0.00 4.84
3454 4344 1.000274 GGGCTTGACATTTTGAACGCT 60.000 47.619 0.00 0.00 0.00 5.07
3455 4345 2.545742 GGGCTTGACATTTTGAACGCTT 60.546 45.455 0.00 0.00 0.00 4.68
3456 4346 3.305064 GGGCTTGACATTTTGAACGCTTA 60.305 43.478 0.00 0.00 0.00 3.09
3457 4347 3.914364 GGCTTGACATTTTGAACGCTTAG 59.086 43.478 0.00 0.00 0.00 2.18
3458 4348 4.537015 GCTTGACATTTTGAACGCTTAGT 58.463 39.130 0.00 0.00 0.00 2.24
3460 4350 5.458779 GCTTGACATTTTGAACGCTTAGTTT 59.541 36.000 0.00 0.00 44.35 2.66
3461 4351 6.345015 GCTTGACATTTTGAACGCTTAGTTTC 60.345 38.462 0.00 0.00 44.35 2.78
3462 4352 6.125327 TGACATTTTGAACGCTTAGTTTCA 57.875 33.333 0.00 0.00 44.35 2.69
3463 4353 6.556212 TGACATTTTGAACGCTTAGTTTCAA 58.444 32.000 6.94 6.94 44.35 2.69
3464 4354 7.199766 TGACATTTTGAACGCTTAGTTTCAAT 58.800 30.769 10.44 0.00 44.35 2.57
3465 4355 8.346300 TGACATTTTGAACGCTTAGTTTCAATA 58.654 29.630 10.44 7.57 44.35 1.90
3466 4356 9.341899 GACATTTTGAACGCTTAGTTTCAATAT 57.658 29.630 10.44 9.02 44.35 1.28
3470 4360 9.820229 TTTTGAACGCTTAGTTTCAATATACTG 57.180 29.630 10.44 0.00 44.35 2.74
3471 4361 7.000575 TGAACGCTTAGTTTCAATATACTGC 57.999 36.000 0.00 0.00 44.35 4.40
3472 4362 5.986004 ACGCTTAGTTTCAATATACTGCC 57.014 39.130 0.00 0.00 0.00 4.85
3473 4363 5.424757 ACGCTTAGTTTCAATATACTGCCA 58.575 37.500 0.00 0.00 0.00 4.92
3474 4364 5.293569 ACGCTTAGTTTCAATATACTGCCAC 59.706 40.000 0.00 0.00 0.00 5.01
3475 4365 5.523916 CGCTTAGTTTCAATATACTGCCACT 59.476 40.000 0.00 0.00 0.00 4.00
3476 4366 6.700081 CGCTTAGTTTCAATATACTGCCACTA 59.300 38.462 0.00 0.00 0.00 2.74
3477 4367 7.385205 CGCTTAGTTTCAATATACTGCCACTAT 59.615 37.037 0.00 0.00 0.00 2.12
3478 4368 9.057089 GCTTAGTTTCAATATACTGCCACTATT 57.943 33.333 0.00 0.00 0.00 1.73
3482 4372 9.057089 AGTTTCAATATACTGCCACTATTTAGC 57.943 33.333 0.00 0.00 0.00 3.09
3483 4373 8.836413 GTTTCAATATACTGCCACTATTTAGCA 58.164 33.333 0.00 0.00 34.79 3.49
3488 4378 2.488204 TGCCACTATTTAGCAGTGCA 57.512 45.000 19.20 0.00 41.72 4.57
3489 4379 2.789213 TGCCACTATTTAGCAGTGCAA 58.211 42.857 19.20 3.82 41.72 4.08
3490 4380 2.749076 TGCCACTATTTAGCAGTGCAAG 59.251 45.455 19.20 8.69 41.72 4.01
3491 4381 2.478539 GCCACTATTTAGCAGTGCAAGC 60.479 50.000 19.20 4.31 41.72 4.01
3492 4382 3.012518 CCACTATTTAGCAGTGCAAGCT 58.987 45.455 19.20 17.73 45.77 3.74
3493 4383 4.191544 CCACTATTTAGCAGTGCAAGCTA 58.808 43.478 19.20 15.86 43.25 3.32
3494 4384 4.818546 CCACTATTTAGCAGTGCAAGCTAT 59.181 41.667 19.20 11.37 43.48 2.97
3495 4385 5.297776 CCACTATTTAGCAGTGCAAGCTATT 59.702 40.000 19.20 13.62 43.48 1.73
3496 4386 6.425504 CACTATTTAGCAGTGCAAGCTATTC 58.574 40.000 19.20 0.00 43.48 1.75
3497 4387 6.037500 CACTATTTAGCAGTGCAAGCTATTCA 59.962 38.462 19.20 9.74 43.48 2.57
3498 4388 6.769822 ACTATTTAGCAGTGCAAGCTATTCAT 59.230 34.615 19.20 14.54 43.48 2.57
3499 4389 5.902613 TTTAGCAGTGCAAGCTATTCATT 57.097 34.783 19.20 0.00 43.48 2.57
3500 4390 7.572523 ATTTAGCAGTGCAAGCTATTCATTA 57.427 32.000 19.20 4.57 43.48 1.90
3501 4391 4.889832 AGCAGTGCAAGCTATTCATTAC 57.110 40.909 19.20 0.00 41.32 1.89
3502 4392 4.521146 AGCAGTGCAAGCTATTCATTACT 58.479 39.130 19.20 0.00 41.32 2.24
3503 4393 4.334759 AGCAGTGCAAGCTATTCATTACTG 59.665 41.667 19.20 0.00 41.32 2.74
3504 4394 4.333649 GCAGTGCAAGCTATTCATTACTGA 59.666 41.667 11.09 0.00 37.15 3.41
3505 4395 5.163723 GCAGTGCAAGCTATTCATTACTGAA 60.164 40.000 11.09 0.00 45.15 3.02
3518 4408 6.572167 TCATTACTGAATGTTTGCACATGA 57.428 33.333 0.00 0.00 43.34 3.07
3519 4409 7.160547 TCATTACTGAATGTTTGCACATGAT 57.839 32.000 0.00 0.00 43.34 2.45
3520 4410 7.604549 TCATTACTGAATGTTTGCACATGATT 58.395 30.769 0.00 0.00 43.34 2.57
3521 4411 8.089597 TCATTACTGAATGTTTGCACATGATTT 58.910 29.630 0.00 0.00 43.34 2.17
3522 4412 7.872163 TTACTGAATGTTTGCACATGATTTC 57.128 32.000 0.00 0.00 43.34 2.17
3523 4413 6.092955 ACTGAATGTTTGCACATGATTTCT 57.907 33.333 0.00 0.00 43.34 2.52
3524 4414 6.518493 ACTGAATGTTTGCACATGATTTCTT 58.482 32.000 0.00 0.00 43.34 2.52
3525 4415 7.660112 ACTGAATGTTTGCACATGATTTCTTA 58.340 30.769 0.00 0.00 43.34 2.10
3526 4416 7.811236 ACTGAATGTTTGCACATGATTTCTTAG 59.189 33.333 0.00 0.00 43.34 2.18
3527 4417 7.092079 TGAATGTTTGCACATGATTTCTTAGG 58.908 34.615 0.00 0.00 43.34 2.69
3528 4418 6.839124 ATGTTTGCACATGATTTCTTAGGA 57.161 33.333 0.00 0.00 42.46 2.94
3529 4419 6.647334 TGTTTGCACATGATTTCTTAGGAA 57.353 33.333 0.00 0.00 0.00 3.36
3530 4420 7.048629 TGTTTGCACATGATTTCTTAGGAAA 57.951 32.000 0.00 2.14 44.26 3.13
3531 4421 7.495901 TGTTTGCACATGATTTCTTAGGAAAA 58.504 30.769 3.93 0.00 43.51 2.29
3532 4422 8.149647 TGTTTGCACATGATTTCTTAGGAAAAT 58.850 29.630 3.93 0.00 43.51 1.82
3533 4423 8.992073 GTTTGCACATGATTTCTTAGGAAAATT 58.008 29.630 3.93 0.00 43.51 1.82
3534 4424 8.761575 TTGCACATGATTTCTTAGGAAAATTC 57.238 30.769 3.93 0.00 43.51 2.17
3535 4425 7.028962 TGCACATGATTTCTTAGGAAAATTCG 58.971 34.615 3.93 0.00 43.51 3.34
3536 4426 7.029563 GCACATGATTTCTTAGGAAAATTCGT 58.970 34.615 3.93 0.00 43.51 3.85
3537 4427 8.181573 GCACATGATTTCTTAGGAAAATTCGTA 58.818 33.333 3.93 0.00 43.51 3.43
3553 4443 4.594123 TTCGTAAGGATTCAGTGTGTCA 57.406 40.909 0.00 0.00 38.47 3.58
3554 4444 4.801330 TCGTAAGGATTCAGTGTGTCAT 57.199 40.909 0.00 0.00 38.47 3.06
3555 4445 5.147330 TCGTAAGGATTCAGTGTGTCATT 57.853 39.130 0.00 0.00 38.47 2.57
3556 4446 4.929211 TCGTAAGGATTCAGTGTGTCATTG 59.071 41.667 7.37 0.00 38.47 2.82
3557 4447 4.929211 CGTAAGGATTCAGTGTGTCATTGA 59.071 41.667 7.37 0.00 0.00 2.57
3558 4448 5.062683 CGTAAGGATTCAGTGTGTCATTGAG 59.937 44.000 7.37 0.39 32.11 3.02
3559 4449 3.341823 AGGATTCAGTGTGTCATTGAGC 58.658 45.455 0.00 0.00 32.11 4.26
3560 4450 3.008813 AGGATTCAGTGTGTCATTGAGCT 59.991 43.478 0.00 0.00 32.11 4.09
3561 4451 3.373439 GGATTCAGTGTGTCATTGAGCTC 59.627 47.826 6.82 6.82 32.11 4.09
3571 4461 2.424956 GTCATTGAGCTCAATTGGGGAC 59.575 50.000 34.17 30.53 43.48 4.46
3617 4536 5.009631 TGAAAGGGATTTACACATGTCCTG 58.990 41.667 0.00 0.00 0.00 3.86
3633 4554 4.146476 TGTCCTGTACATCCATGGGACAT 61.146 47.826 22.00 0.00 45.23 3.06
3669 4654 5.846203 ACTGCTTTAGTGCAACATTTCATT 58.154 33.333 0.00 0.00 42.83 2.57
3680 4665 9.287373 AGTGCAACATTTCATTTATTCCAATTT 57.713 25.926 0.00 0.00 41.43 1.82
3681 4666 9.332301 GTGCAACATTTCATTTATTCCAATTTG 57.668 29.630 0.00 0.00 36.32 2.32
3725 4710 4.781775 TCCCAGTGACAGAACCTAAAAA 57.218 40.909 0.00 0.00 0.00 1.94
3729 4714 5.182001 CCCAGTGACAGAACCTAAAAAGATG 59.818 44.000 0.00 0.00 0.00 2.90
3734 4719 8.375506 AGTGACAGAACCTAAAAAGATGTATCA 58.624 33.333 0.00 0.00 0.00 2.15
3797 4782 1.316651 GAAGCCCATGATTCTGAGCC 58.683 55.000 0.00 0.00 34.08 4.70
3823 4808 0.455633 CAGCTCGAGCACCAAAATGC 60.456 55.000 36.87 9.07 46.50 3.56
3977 4973 8.420374 TTTTCTTGATAGGTTCGATATGTCAC 57.580 34.615 0.00 0.00 0.00 3.67
3978 4974 6.709018 TCTTGATAGGTTCGATATGTCACA 57.291 37.500 0.00 0.00 0.00 3.58
3979 4975 7.290110 TCTTGATAGGTTCGATATGTCACAT 57.710 36.000 0.00 0.00 0.00 3.21
3980 4976 7.726216 TCTTGATAGGTTCGATATGTCACATT 58.274 34.615 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.735978 TCATCTGCTTACGTGCACGG 60.736 55.000 39.21 24.45 44.95 4.94
87 92 0.321919 TGAGAGAGTTGCCATGTGCC 60.322 55.000 4.07 0.00 40.16 5.01
111 116 4.158015 AGTTGCCACCTACTAACACTAGT 58.842 43.478 0.00 0.00 41.43 2.57
169 175 8.210265 TCAACTGTAATTGCCATGTATGATCTA 58.790 33.333 0.00 0.00 0.00 1.98
173 179 5.066375 GCTCAACTGTAATTGCCATGTATGA 59.934 40.000 0.00 0.00 0.00 2.15
186 192 1.885887 GCCATGGTTGCTCAACTGTAA 59.114 47.619 14.67 0.00 40.94 2.41
188 194 0.467844 TGCCATGGTTGCTCAACTGT 60.468 50.000 14.67 0.00 40.94 3.55
284 291 2.045438 CCCGCAGTTGCCATGGTA 60.045 61.111 14.67 5.86 37.91 3.25
355 362 4.673298 CGCCCACACGCCTGTACA 62.673 66.667 0.00 0.00 0.00 2.90
373 380 3.466836 TGCGAGTGGGCAAAATAGATAG 58.533 45.455 0.00 0.00 40.59 2.08
390 397 2.580815 CCTCTCACATGCCTGCGA 59.419 61.111 0.00 0.00 0.00 5.10
425 434 0.037590 TAATGCCCACACGCCTCTTT 59.962 50.000 0.00 0.00 0.00 2.52
494 505 1.360192 GTCTGCCCACACAGTTTGC 59.640 57.895 0.00 0.00 38.84 3.68
559 570 0.309302 TTGACCGGTCAATTTGTGCG 59.691 50.000 39.59 0.00 43.90 5.34
572 583 8.180920 TGTGATGATTTTATACATGTTTGACCG 58.819 33.333 2.30 0.00 0.00 4.79
647 661 5.406649 ACGTGAAAAATCTGAAAGTTGCAA 58.593 33.333 0.00 0.00 33.76 4.08
661 675 9.043079 TGTTCTGTGTGTATATTACGTGAAAAA 57.957 29.630 0.00 0.00 0.00 1.94
676 690 6.707440 TTTGGATGTTATTGTTCTGTGTGT 57.293 33.333 0.00 0.00 0.00 3.72
696 713 8.783833 TTAGGAGTGAGAAAAGATCTGATTTG 57.216 34.615 0.00 0.00 38.96 2.32
700 717 8.138928 TGATTTAGGAGTGAGAAAAGATCTGA 57.861 34.615 0.00 0.00 38.96 3.27
703 720 7.170658 CGGATGATTTAGGAGTGAGAAAAGATC 59.829 40.741 0.00 0.00 0.00 2.75
705 722 6.341316 CGGATGATTTAGGAGTGAGAAAAGA 58.659 40.000 0.00 0.00 0.00 2.52
712 731 3.904800 TTGCGGATGATTTAGGAGTGA 57.095 42.857 0.00 0.00 0.00 3.41
879 925 3.901844 CGGGGAGGATTTTATAGTCTGGA 59.098 47.826 0.00 0.00 0.00 3.86
970 1017 4.918201 GAGATTGGGGCGGCGGAG 62.918 72.222 9.78 0.00 0.00 4.63
1348 1778 0.898789 ACCGAGATGACGTCCTTGGT 60.899 55.000 21.68 21.68 41.24 3.67
1584 2014 0.250467 GGAGCTTGCAGTTGGTGAGA 60.250 55.000 0.00 0.00 0.00 3.27
1872 2302 0.322008 CCTGGTTCTTGGAGACCTGC 60.322 60.000 0.00 0.00 0.00 4.85
1909 2339 2.482142 GCAGGTTAACGATCCAGGAGAG 60.482 54.545 0.00 0.00 0.00 3.20
1911 2341 1.482593 AGCAGGTTAACGATCCAGGAG 59.517 52.381 0.00 0.00 0.00 3.69
1983 2413 0.944386 CGGGCCAAATGGAACTATCG 59.056 55.000 4.39 0.00 37.39 2.92
1999 2429 1.593006 GCACGTCATGTTAAGATCGGG 59.407 52.381 0.00 0.00 0.00 5.14
2002 2432 3.932710 TCAAGGCACGTCATGTTAAGATC 59.067 43.478 0.00 0.00 0.00 2.75
2017 2447 5.009631 ACACTACTGCATAATTTCAAGGCA 58.990 37.500 0.00 0.00 0.00 4.75
2046 2476 7.173562 TGAAATTGCACGGTACAATTAACTAGT 59.826 33.333 17.26 3.57 44.76 2.57
2061 2491 2.068837 ACAAGCCATGAAATTGCACG 57.931 45.000 0.00 0.00 37.46 5.34
2063 2493 3.747854 TCAACAAGCCATGAAATTGCA 57.252 38.095 0.00 0.00 37.46 4.08
2068 2498 6.507958 TCGAATTATCAACAAGCCATGAAA 57.492 33.333 0.00 0.00 0.00 2.69
2102 2532 6.062646 CACTTTCAACACGATGTACTTAACG 58.937 40.000 0.00 0.00 0.00 3.18
2103 2533 7.169035 TCACTTTCAACACGATGTACTTAAC 57.831 36.000 0.00 0.00 0.00 2.01
2105 2535 7.493320 ACTTTCACTTTCAACACGATGTACTTA 59.507 33.333 0.00 0.00 0.00 2.24
2106 2536 6.315393 ACTTTCACTTTCAACACGATGTACTT 59.685 34.615 0.00 0.00 0.00 2.24
2107 2537 5.815740 ACTTTCACTTTCAACACGATGTACT 59.184 36.000 0.00 0.00 0.00 2.73
2108 2538 5.901884 CACTTTCACTTTCAACACGATGTAC 59.098 40.000 0.00 0.00 0.00 2.90
2114 2544 4.908736 ACATCACTTTCACTTTCAACACG 58.091 39.130 0.00 0.00 0.00 4.49
2118 2548 7.655328 ACACAAAAACATCACTTTCACTTTCAA 59.345 29.630 0.00 0.00 0.00 2.69
2127 2557 6.686630 TCAACTGACACAAAAACATCACTTT 58.313 32.000 0.00 0.00 0.00 2.66
2187 2618 1.745087 AGCCAGTACAATTGCCAATCG 59.255 47.619 5.05 0.00 0.00 3.34
2222 2653 0.249447 TGTGAGCACAGAAGTCACGG 60.249 55.000 0.00 0.00 42.98 4.94
2224 2655 2.759191 TCATGTGAGCACAGAAGTCAC 58.241 47.619 9.37 0.00 45.48 3.67
2231 2662 4.502016 ACACTAGATTCATGTGAGCACAG 58.498 43.478 9.37 2.31 45.48 3.66
2280 2871 8.400947 CAAGCAAGCACAACACTTAATATAGAT 58.599 33.333 0.00 0.00 0.00 1.98
2292 2883 1.993542 CACAACAAGCAAGCACAACA 58.006 45.000 0.00 0.00 0.00 3.33
2293 2884 0.646895 GCACAACAAGCAAGCACAAC 59.353 50.000 0.00 0.00 0.00 3.32
2311 2902 7.146648 GGTAACTACCATAGATAGTTCAGTGC 58.853 42.308 0.80 0.00 45.73 4.40
2365 2958 9.900710 GGTAATATTAGAGCATGGTATCTATCG 57.099 37.037 0.00 0.00 0.00 2.92
2392 2985 3.132160 CAGCATCAAATTTGCACCACAA 58.868 40.909 13.54 0.00 42.62 3.33
2408 3001 6.006449 ACTTAAAGATGGAACTGAACAGCAT 58.994 36.000 1.46 0.00 0.00 3.79
2444 3037 9.278978 TCATGTTTCTGCTACATACTTTACAAA 57.721 29.630 0.00 0.00 34.59 2.83
2447 3040 7.852945 GCATCATGTTTCTGCTACATACTTTAC 59.147 37.037 0.00 0.00 34.59 2.01
2448 3041 7.770433 AGCATCATGTTTCTGCTACATACTTTA 59.230 33.333 11.28 0.00 44.08 1.85
2449 3042 6.600822 AGCATCATGTTTCTGCTACATACTTT 59.399 34.615 11.28 0.00 44.08 2.66
2453 3046 5.430886 ACAGCATCATGTTTCTGCTACATA 58.569 37.500 12.17 0.00 44.09 2.29
2454 3047 4.267536 ACAGCATCATGTTTCTGCTACAT 58.732 39.130 12.17 0.00 44.09 2.29
2498 3095 7.595311 TGACACATATGACAAACATCTGTAC 57.405 36.000 10.38 0.00 41.93 2.90
2509 3106 7.566760 AAGAACACTTTTGACACATATGACA 57.433 32.000 10.38 3.96 0.00 3.58
2528 3125 2.289547 TGCGCAGGTCACTAAAAAGAAC 59.710 45.455 5.66 0.00 0.00 3.01
2547 3144 4.494350 AGACACAACAATGTTCAGATGC 57.506 40.909 0.00 0.00 37.82 3.91
2606 3210 8.239681 TCTTGAGAATATACACTGTCAAAACG 57.760 34.615 0.00 0.00 0.00 3.60
2611 3215 6.530019 TGCTCTTGAGAATATACACTGTCA 57.470 37.500 1.30 0.00 0.00 3.58
2612 3216 8.333908 CAATTGCTCTTGAGAATATACACTGTC 58.666 37.037 1.30 0.00 0.00 3.51
2641 3245 4.212425 TGCAGACGGTGTAACAAATACTTG 59.788 41.667 0.00 0.00 39.98 3.16
2657 3261 4.867047 AGAAGATTACACAGATTGCAGACG 59.133 41.667 0.00 0.00 0.00 4.18
2671 3275 7.279758 CAGATCCTCTCCAAAACAGAAGATTAC 59.720 40.741 0.00 0.00 0.00 1.89
2682 3289 2.909006 AGAGTGCAGATCCTCTCCAAAA 59.091 45.455 0.00 0.00 32.65 2.44
2683 3290 2.544721 AGAGTGCAGATCCTCTCCAAA 58.455 47.619 0.00 0.00 32.65 3.28
2717 3324 9.616156 TTGTAAAATAGAGTGGTTTAGTGAACA 57.384 29.630 0.00 0.00 40.13 3.18
2738 3345 8.918202 ACAGTTGACAGGAATAAGAATTGTAA 57.082 30.769 0.00 0.00 0.00 2.41
2740 3347 7.936847 TGTACAGTTGACAGGAATAAGAATTGT 59.063 33.333 0.00 0.00 0.00 2.71
2743 3350 7.680730 AGTGTACAGTTGACAGGAATAAGAAT 58.319 34.615 0.00 0.00 0.00 2.40
2746 3353 6.706270 ACAAGTGTACAGTTGACAGGAATAAG 59.294 38.462 37.91 15.96 42.77 1.73
2747 3354 6.481976 CACAAGTGTACAGTTGACAGGAATAA 59.518 38.462 37.91 0.00 42.77 1.40
2749 3356 4.816385 CACAAGTGTACAGTTGACAGGAAT 59.184 41.667 37.91 18.80 42.77 3.01
2823 3692 9.900710 CAGGAATACATAGTCAGTACAGAATAC 57.099 37.037 0.00 0.00 0.00 1.89
2846 3724 5.163405 ACAGCATCTACATAGTTGTACCAGG 60.163 44.000 0.00 0.00 37.28 4.45
2847 3725 5.907207 ACAGCATCTACATAGTTGTACCAG 58.093 41.667 0.00 0.00 37.28 4.00
2971 3849 1.041447 AGCAAGACCCCTACGCGTAT 61.041 55.000 20.91 4.30 0.00 3.06
2982 3860 1.078567 CTCTCTGGCCAGCAAGACC 60.079 63.158 28.91 0.00 0.00 3.85
2995 3874 1.207329 GACGGGCATTACAACCTCTCT 59.793 52.381 0.00 0.00 0.00 3.10
2996 3875 1.066430 TGACGGGCATTACAACCTCTC 60.066 52.381 0.00 0.00 0.00 3.20
3038 3917 3.508845 AAGTACCAGGCAGACAATGTT 57.491 42.857 0.00 0.00 0.00 2.71
3175 4065 1.741770 AGGCGCGGCTAAAGAGTTG 60.742 57.895 35.57 0.00 0.00 3.16
3180 4070 0.811616 AAGATCAGGCGCGGCTAAAG 60.812 55.000 35.79 22.95 0.00 1.85
3198 4088 5.825679 AGCAATAACCCGCATAGACAAATAA 59.174 36.000 0.00 0.00 0.00 1.40
3208 4098 1.815866 GGCAAGCAATAACCCGCAT 59.184 52.632 0.00 0.00 0.00 4.73
3225 4115 0.593773 CCCAAAGACAACGCAAACGG 60.594 55.000 0.00 0.00 46.04 4.44
3243 4133 5.643379 TGCAAAGAACAATCAGTAATCCC 57.357 39.130 0.00 0.00 0.00 3.85
3245 4135 9.793252 ACATAATGCAAAGAACAATCAGTAATC 57.207 29.630 0.00 0.00 0.00 1.75
3249 4139 7.095523 GCAAACATAATGCAAAGAACAATCAGT 60.096 33.333 0.00 0.00 43.29 3.41
3256 4146 5.402270 AGTTCGCAAACATAATGCAAAGAAC 59.598 36.000 0.00 8.66 44.01 3.01
3257 4147 5.401972 CAGTTCGCAAACATAATGCAAAGAA 59.598 36.000 0.00 0.00 44.01 2.52
3258 4148 4.916831 CAGTTCGCAAACATAATGCAAAGA 59.083 37.500 0.00 0.00 44.01 2.52
3259 4149 4.681025 ACAGTTCGCAAACATAATGCAAAG 59.319 37.500 0.00 0.00 44.01 2.77
3260 4150 4.443725 CACAGTTCGCAAACATAATGCAAA 59.556 37.500 0.00 0.00 44.01 3.68
3261 4151 3.980134 CACAGTTCGCAAACATAATGCAA 59.020 39.130 0.00 0.00 44.01 4.08
3262 4152 3.563508 CACAGTTCGCAAACATAATGCA 58.436 40.909 0.00 0.00 44.01 3.96
3263 4153 2.916716 CCACAGTTCGCAAACATAATGC 59.083 45.455 0.00 0.00 37.88 3.56
3264 4154 3.057596 ACCCACAGTTCGCAAACATAATG 60.058 43.478 0.00 0.00 37.88 1.90
3265 4155 3.153919 ACCCACAGTTCGCAAACATAAT 58.846 40.909 0.00 0.00 37.88 1.28
3266 4156 2.577700 ACCCACAGTTCGCAAACATAA 58.422 42.857 0.00 0.00 37.88 1.90
3267 4157 2.264005 ACCCACAGTTCGCAAACATA 57.736 45.000 0.00 0.00 37.88 2.29
3268 4158 1.066908 CAACCCACAGTTCGCAAACAT 59.933 47.619 0.00 0.00 36.18 2.71
3269 4159 0.453793 CAACCCACAGTTCGCAAACA 59.546 50.000 0.00 0.00 36.18 2.83
3275 4165 2.931512 AAACAACAACCCACAGTTCG 57.068 45.000 0.00 0.00 36.18 3.95
3285 4175 3.243737 GGGGATCACCAGAAAACAACAAC 60.244 47.826 9.87 0.00 42.91 3.32
3286 4176 2.962421 GGGGATCACCAGAAAACAACAA 59.038 45.455 9.87 0.00 42.91 2.83
3297 4187 0.842030 AGACAGCAAGGGGATCACCA 60.842 55.000 18.46 0.00 42.91 4.17
3324 4214 3.450028 GCAAAGTGCACCCAACAAA 57.550 47.368 14.63 0.00 44.26 2.83
3336 4226 1.407989 GCTAGCTCCTCCATGCAAAGT 60.408 52.381 7.70 0.00 0.00 2.66
3355 4245 1.503542 CTCAACAGGGCGAACATGC 59.496 57.895 0.00 0.00 33.23 4.06
3356 4246 1.236616 TGCTCAACAGGGCGAACATG 61.237 55.000 0.00 0.00 36.81 3.21
3357 4247 0.322816 ATGCTCAACAGGGCGAACAT 60.323 50.000 0.00 0.00 0.00 2.71
3358 4248 0.955428 GATGCTCAACAGGGCGAACA 60.955 55.000 0.00 0.00 0.00 3.18
3359 4249 0.674895 AGATGCTCAACAGGGCGAAC 60.675 55.000 0.00 0.00 0.00 3.95
3360 4250 0.674581 CAGATGCTCAACAGGGCGAA 60.675 55.000 0.00 0.00 0.00 4.70
3361 4251 1.078918 CAGATGCTCAACAGGGCGA 60.079 57.895 0.00 0.00 0.00 5.54
3362 4252 2.758089 GCAGATGCTCAACAGGGCG 61.758 63.158 0.00 0.00 38.21 6.13
3363 4253 3.194719 GCAGATGCTCAACAGGGC 58.805 61.111 0.00 0.00 38.21 5.19
3373 4263 0.457851 ACGGTACAGAGAGCAGATGC 59.542 55.000 0.00 0.00 42.49 3.91
3374 4264 2.926200 CAAACGGTACAGAGAGCAGATG 59.074 50.000 0.00 0.00 0.00 2.90
3375 4265 2.093973 CCAAACGGTACAGAGAGCAGAT 60.094 50.000 0.00 0.00 0.00 2.90
3376 4266 1.272490 CCAAACGGTACAGAGAGCAGA 59.728 52.381 0.00 0.00 0.00 4.26
3377 4267 1.673033 CCCAAACGGTACAGAGAGCAG 60.673 57.143 0.00 0.00 0.00 4.24
3378 4268 0.320374 CCCAAACGGTACAGAGAGCA 59.680 55.000 0.00 0.00 0.00 4.26
3379 4269 0.320697 ACCCAAACGGTACAGAGAGC 59.679 55.000 0.00 0.00 45.97 4.09
3389 4279 1.961793 TCAAACAGAGACCCAAACGG 58.038 50.000 0.00 0.00 37.81 4.44
3390 4280 2.878406 ACATCAAACAGAGACCCAAACG 59.122 45.455 0.00 0.00 0.00 3.60
3391 4281 3.550842 GCACATCAAACAGAGACCCAAAC 60.551 47.826 0.00 0.00 0.00 2.93
3392 4282 2.622942 GCACATCAAACAGAGACCCAAA 59.377 45.455 0.00 0.00 0.00 3.28
3393 4283 2.229792 GCACATCAAACAGAGACCCAA 58.770 47.619 0.00 0.00 0.00 4.12
3394 4284 1.545428 GGCACATCAAACAGAGACCCA 60.545 52.381 0.00 0.00 0.00 4.51
3395 4285 1.168714 GGCACATCAAACAGAGACCC 58.831 55.000 0.00 0.00 0.00 4.46
3396 4286 0.798776 CGGCACATCAAACAGAGACC 59.201 55.000 0.00 0.00 0.00 3.85
3397 4287 1.512926 ACGGCACATCAAACAGAGAC 58.487 50.000 0.00 0.00 0.00 3.36
3398 4288 2.254546 AACGGCACATCAAACAGAGA 57.745 45.000 0.00 0.00 0.00 3.10
3399 4289 3.667960 GCTTAACGGCACATCAAACAGAG 60.668 47.826 0.00 0.00 0.00 3.35
3400 4290 2.225491 GCTTAACGGCACATCAAACAGA 59.775 45.455 0.00 0.00 0.00 3.41
3401 4291 2.584791 GCTTAACGGCACATCAAACAG 58.415 47.619 0.00 0.00 0.00 3.16
3402 4292 1.268352 GGCTTAACGGCACATCAAACA 59.732 47.619 0.00 0.00 38.25 2.83
3403 4293 1.539827 AGGCTTAACGGCACATCAAAC 59.460 47.619 0.00 0.00 41.46 2.93
3404 4294 1.539388 CAGGCTTAACGGCACATCAAA 59.461 47.619 0.00 0.00 41.46 2.69
3405 4295 1.164411 CAGGCTTAACGGCACATCAA 58.836 50.000 0.00 0.00 41.46 2.57
3406 4296 0.323302 TCAGGCTTAACGGCACATCA 59.677 50.000 0.00 0.00 41.46 3.07
3407 4297 1.448985 TTCAGGCTTAACGGCACATC 58.551 50.000 0.00 0.00 41.46 3.06
3408 4298 2.128771 ATTCAGGCTTAACGGCACAT 57.871 45.000 0.00 0.00 41.46 3.21
3409 4299 1.904287 AATTCAGGCTTAACGGCACA 58.096 45.000 0.00 0.00 41.46 4.57
3410 4300 3.439129 ACTAAATTCAGGCTTAACGGCAC 59.561 43.478 0.00 0.00 41.46 5.01
3411 4301 3.681593 ACTAAATTCAGGCTTAACGGCA 58.318 40.909 0.00 0.00 41.46 5.69
3412 4302 4.412207 CAACTAAATTCAGGCTTAACGGC 58.588 43.478 0.00 0.00 38.75 5.68
3413 4303 4.142469 CCCAACTAAATTCAGGCTTAACGG 60.142 45.833 0.00 0.00 0.00 4.44
3414 4304 4.674362 GCCCAACTAAATTCAGGCTTAACG 60.674 45.833 0.00 0.00 34.92 3.18
3415 4305 4.462834 AGCCCAACTAAATTCAGGCTTAAC 59.537 41.667 0.00 0.00 42.21 2.01
3416 4306 4.672899 AGCCCAACTAAATTCAGGCTTAA 58.327 39.130 0.00 0.00 42.21 1.85
3417 4307 4.316025 AGCCCAACTAAATTCAGGCTTA 57.684 40.909 0.00 0.00 42.21 3.09
3418 4308 3.175438 AGCCCAACTAAATTCAGGCTT 57.825 42.857 0.00 0.00 42.21 4.35
3419 4309 2.827921 CAAGCCCAACTAAATTCAGGCT 59.172 45.455 0.00 0.00 45.33 4.58
3420 4310 2.825532 TCAAGCCCAACTAAATTCAGGC 59.174 45.455 0.00 0.00 37.12 4.85
3421 4311 3.826157 TGTCAAGCCCAACTAAATTCAGG 59.174 43.478 0.00 0.00 0.00 3.86
3422 4312 5.649782 ATGTCAAGCCCAACTAAATTCAG 57.350 39.130 0.00 0.00 0.00 3.02
3423 4313 6.418057 AAATGTCAAGCCCAACTAAATTCA 57.582 33.333 0.00 0.00 0.00 2.57
3424 4314 6.928492 TCAAAATGTCAAGCCCAACTAAATTC 59.072 34.615 0.00 0.00 0.00 2.17
3425 4315 6.825610 TCAAAATGTCAAGCCCAACTAAATT 58.174 32.000 0.00 0.00 0.00 1.82
3426 4316 6.418057 TCAAAATGTCAAGCCCAACTAAAT 57.582 33.333 0.00 0.00 0.00 1.40
3427 4317 5.860941 TCAAAATGTCAAGCCCAACTAAA 57.139 34.783 0.00 0.00 0.00 1.85
3428 4318 5.596845 GTTCAAAATGTCAAGCCCAACTAA 58.403 37.500 0.00 0.00 0.00 2.24
3429 4319 4.261405 CGTTCAAAATGTCAAGCCCAACTA 60.261 41.667 0.00 0.00 0.00 2.24
3430 4320 3.490761 CGTTCAAAATGTCAAGCCCAACT 60.491 43.478 0.00 0.00 0.00 3.16
3431 4321 2.794350 CGTTCAAAATGTCAAGCCCAAC 59.206 45.455 0.00 0.00 0.00 3.77
3432 4322 2.801342 GCGTTCAAAATGTCAAGCCCAA 60.801 45.455 0.00 0.00 0.00 4.12
3433 4323 1.269517 GCGTTCAAAATGTCAAGCCCA 60.270 47.619 0.00 0.00 0.00 5.36
3434 4324 1.000274 AGCGTTCAAAATGTCAAGCCC 60.000 47.619 0.00 0.00 0.00 5.19
3435 4325 2.422276 AGCGTTCAAAATGTCAAGCC 57.578 45.000 0.00 0.00 0.00 4.35
3436 4326 4.537015 ACTAAGCGTTCAAAATGTCAAGC 58.463 39.130 0.00 0.00 0.00 4.01
3437 4327 6.690957 TGAAACTAAGCGTTCAAAATGTCAAG 59.309 34.615 0.00 0.00 33.90 3.02
3438 4328 6.556212 TGAAACTAAGCGTTCAAAATGTCAA 58.444 32.000 0.00 0.00 33.90 3.18
3439 4329 6.125327 TGAAACTAAGCGTTCAAAATGTCA 57.875 33.333 0.00 0.00 33.90 3.58
3440 4330 7.623268 ATTGAAACTAAGCGTTCAAAATGTC 57.377 32.000 3.22 0.00 33.90 3.06
3444 4334 9.820229 CAGTATATTGAAACTAAGCGTTCAAAA 57.180 29.630 3.22 0.00 33.90 2.44
3445 4335 7.960738 GCAGTATATTGAAACTAAGCGTTCAAA 59.039 33.333 0.00 0.00 33.90 2.69
3446 4336 7.413657 GGCAGTATATTGAAACTAAGCGTTCAA 60.414 37.037 0.00 1.68 33.90 2.69
3447 4337 6.036735 GGCAGTATATTGAAACTAAGCGTTCA 59.963 38.462 0.00 0.00 33.90 3.18
3448 4338 6.036735 TGGCAGTATATTGAAACTAAGCGTTC 59.963 38.462 0.00 0.00 33.90 3.95
3449 4339 5.878116 TGGCAGTATATTGAAACTAAGCGTT 59.122 36.000 0.00 0.00 37.47 4.84
3450 4340 5.293569 GTGGCAGTATATTGAAACTAAGCGT 59.706 40.000 0.00 0.00 0.00 5.07
3451 4341 5.523916 AGTGGCAGTATATTGAAACTAAGCG 59.476 40.000 0.00 0.00 0.00 4.68
3452 4342 6.927294 AGTGGCAGTATATTGAAACTAAGC 57.073 37.500 0.00 0.00 0.00 3.09
3456 4346 9.057089 GCTAAATAGTGGCAGTATATTGAAACT 57.943 33.333 14.95 4.33 0.00 2.66
3457 4347 8.836413 TGCTAAATAGTGGCAGTATATTGAAAC 58.164 33.333 14.95 3.26 0.00 2.78
3458 4348 8.972458 TGCTAAATAGTGGCAGTATATTGAAA 57.028 30.769 14.95 0.00 0.00 2.69
3459 4349 8.607441 CTGCTAAATAGTGGCAGTATATTGAA 57.393 34.615 14.95 2.84 45.59 2.69
3469 4359 2.488204 TGCACTGCTAAATAGTGGCA 57.512 45.000 1.98 3.51 44.36 4.92
3470 4360 2.478539 GCTTGCACTGCTAAATAGTGGC 60.479 50.000 1.98 0.00 44.36 5.01
3471 4361 3.012518 AGCTTGCACTGCTAAATAGTGG 58.987 45.455 11.22 0.00 44.36 4.00
3472 4362 5.998454 ATAGCTTGCACTGCTAAATAGTG 57.002 39.130 20.13 0.00 44.73 2.74
3473 4363 6.115446 TGAATAGCTTGCACTGCTAAATAGT 58.885 36.000 20.13 5.30 44.73 2.12
3474 4364 6.609237 TGAATAGCTTGCACTGCTAAATAG 57.391 37.500 20.13 0.00 44.73 1.73
3475 4365 7.572523 AATGAATAGCTTGCACTGCTAAATA 57.427 32.000 20.13 11.80 44.73 1.40
3476 4366 6.461110 AATGAATAGCTTGCACTGCTAAAT 57.539 33.333 20.13 13.90 44.73 1.40
3477 4367 5.902613 AATGAATAGCTTGCACTGCTAAA 57.097 34.783 20.13 11.86 44.73 1.85
3478 4368 6.037500 CAGTAATGAATAGCTTGCACTGCTAA 59.962 38.462 20.13 8.40 44.73 3.09
3479 4369 5.525012 CAGTAATGAATAGCTTGCACTGCTA 59.475 40.000 19.00 19.00 45.49 3.49
3480 4370 4.334759 CAGTAATGAATAGCTTGCACTGCT 59.665 41.667 16.24 16.24 43.79 4.24
3481 4371 4.333649 TCAGTAATGAATAGCTTGCACTGC 59.666 41.667 0.00 2.91 33.77 4.40
3482 4372 6.426980 TTCAGTAATGAATAGCTTGCACTG 57.573 37.500 0.56 0.00 34.78 3.66
3483 4373 6.600822 ACATTCAGTAATGAATAGCTTGCACT 59.399 34.615 17.33 0.00 44.50 4.40
3484 4374 6.789262 ACATTCAGTAATGAATAGCTTGCAC 58.211 36.000 17.33 0.00 44.50 4.57
3485 4375 7.395190 AACATTCAGTAATGAATAGCTTGCA 57.605 32.000 17.33 0.00 44.50 4.08
3486 4376 7.253883 GCAAACATTCAGTAATGAATAGCTTGC 60.254 37.037 25.87 25.87 44.50 4.01
3487 4377 7.756272 TGCAAACATTCAGTAATGAATAGCTTG 59.244 33.333 17.33 18.57 44.50 4.01
3488 4378 7.756722 GTGCAAACATTCAGTAATGAATAGCTT 59.243 33.333 17.33 8.75 44.50 3.74
3489 4379 7.094248 TGTGCAAACATTCAGTAATGAATAGCT 60.094 33.333 17.33 3.39 44.50 3.32
3490 4380 7.028962 TGTGCAAACATTCAGTAATGAATAGC 58.971 34.615 17.33 17.38 44.50 2.97
3491 4381 9.016623 CATGTGCAAACATTCAGTAATGAATAG 57.983 33.333 17.33 13.78 44.50 1.73
3492 4382 8.738106 TCATGTGCAAACATTCAGTAATGAATA 58.262 29.630 17.33 1.06 44.50 1.75
3493 4383 7.604549 TCATGTGCAAACATTCAGTAATGAAT 58.395 30.769 12.46 12.46 44.50 2.57
3494 4384 6.979465 TCATGTGCAAACATTCAGTAATGAA 58.021 32.000 8.22 8.22 44.50 2.57
3495 4385 6.572167 TCATGTGCAAACATTCAGTAATGA 57.428 33.333 5.18 0.00 44.50 2.57
3496 4386 7.821595 AATCATGTGCAAACATTCAGTAATG 57.178 32.000 0.00 0.00 46.66 1.90
3497 4387 8.308931 AGAAATCATGTGCAAACATTCAGTAAT 58.691 29.630 0.00 0.00 0.00 1.89
3498 4388 7.660112 AGAAATCATGTGCAAACATTCAGTAA 58.340 30.769 0.00 0.00 0.00 2.24
3499 4389 7.218228 AGAAATCATGTGCAAACATTCAGTA 57.782 32.000 0.00 0.00 0.00 2.74
3500 4390 6.092955 AGAAATCATGTGCAAACATTCAGT 57.907 33.333 0.00 0.00 0.00 3.41
3501 4391 7.274904 CCTAAGAAATCATGTGCAAACATTCAG 59.725 37.037 0.00 0.00 0.00 3.02
3502 4392 7.039853 TCCTAAGAAATCATGTGCAAACATTCA 60.040 33.333 0.00 0.00 0.00 2.57
3503 4393 7.315142 TCCTAAGAAATCATGTGCAAACATTC 58.685 34.615 0.00 0.00 0.00 2.67
3504 4394 7.230849 TCCTAAGAAATCATGTGCAAACATT 57.769 32.000 0.00 0.00 0.00 2.71
3505 4395 6.839124 TCCTAAGAAATCATGTGCAAACAT 57.161 33.333 0.00 0.00 0.00 2.71
3506 4396 6.647334 TTCCTAAGAAATCATGTGCAAACA 57.353 33.333 0.00 0.00 0.00 2.83
3507 4397 7.945033 TTTTCCTAAGAAATCATGTGCAAAC 57.055 32.000 0.00 0.00 41.55 2.93
3508 4398 9.206870 GAATTTTCCTAAGAAATCATGTGCAAA 57.793 29.630 0.00 0.00 41.55 3.68
3509 4399 7.541783 CGAATTTTCCTAAGAAATCATGTGCAA 59.458 33.333 0.00 0.00 41.55 4.08
3510 4400 7.028962 CGAATTTTCCTAAGAAATCATGTGCA 58.971 34.615 0.00 0.00 41.55 4.57
3511 4401 7.029563 ACGAATTTTCCTAAGAAATCATGTGC 58.970 34.615 0.00 0.00 41.55 4.57
3514 4404 9.722056 CCTTACGAATTTTCCTAAGAAATCATG 57.278 33.333 9.34 0.00 41.55 3.07
3515 4405 9.681062 TCCTTACGAATTTTCCTAAGAAATCAT 57.319 29.630 9.34 0.00 41.55 2.45
3516 4406 9.681062 ATCCTTACGAATTTTCCTAAGAAATCA 57.319 29.630 9.34 0.00 41.55 2.57
3519 4409 9.509956 TGAATCCTTACGAATTTTCCTAAGAAA 57.490 29.630 9.34 0.00 40.26 2.52
3520 4410 9.162764 CTGAATCCTTACGAATTTTCCTAAGAA 57.837 33.333 9.34 0.00 31.59 2.52
3521 4411 8.319146 ACTGAATCCTTACGAATTTTCCTAAGA 58.681 33.333 9.34 0.00 31.59 2.10
3522 4412 8.391106 CACTGAATCCTTACGAATTTTCCTAAG 58.609 37.037 0.00 3.49 0.00 2.18
3523 4413 7.881232 ACACTGAATCCTTACGAATTTTCCTAA 59.119 33.333 0.00 0.00 0.00 2.69
3524 4414 7.333423 CACACTGAATCCTTACGAATTTTCCTA 59.667 37.037 0.00 0.00 0.00 2.94
3525 4415 6.149474 CACACTGAATCCTTACGAATTTTCCT 59.851 38.462 0.00 0.00 0.00 3.36
3526 4416 6.072673 ACACACTGAATCCTTACGAATTTTCC 60.073 38.462 0.00 0.00 0.00 3.13
3527 4417 6.899114 ACACACTGAATCCTTACGAATTTTC 58.101 36.000 0.00 0.00 0.00 2.29
3528 4418 6.485313 TGACACACTGAATCCTTACGAATTTT 59.515 34.615 0.00 0.00 0.00 1.82
3529 4419 5.995282 TGACACACTGAATCCTTACGAATTT 59.005 36.000 0.00 0.00 0.00 1.82
3530 4420 5.547465 TGACACACTGAATCCTTACGAATT 58.453 37.500 0.00 0.00 0.00 2.17
3531 4421 5.147330 TGACACACTGAATCCTTACGAAT 57.853 39.130 0.00 0.00 0.00 3.34
3532 4422 4.594123 TGACACACTGAATCCTTACGAA 57.406 40.909 0.00 0.00 0.00 3.85
3533 4423 4.801330 ATGACACACTGAATCCTTACGA 57.199 40.909 0.00 0.00 0.00 3.43
3534 4424 4.929211 TCAATGACACACTGAATCCTTACG 59.071 41.667 0.00 0.00 0.00 3.18
3535 4425 5.163814 GCTCAATGACACACTGAATCCTTAC 60.164 44.000 0.00 0.00 0.00 2.34
3536 4426 4.937620 GCTCAATGACACACTGAATCCTTA 59.062 41.667 0.00 0.00 0.00 2.69
3537 4427 3.755378 GCTCAATGACACACTGAATCCTT 59.245 43.478 0.00 0.00 0.00 3.36
3538 4428 3.008813 AGCTCAATGACACACTGAATCCT 59.991 43.478 0.00 0.00 0.00 3.24
3539 4429 3.341823 AGCTCAATGACACACTGAATCC 58.658 45.455 0.00 0.00 0.00 3.01
3540 4430 3.999001 TGAGCTCAATGACACACTGAATC 59.001 43.478 15.67 0.00 0.00 2.52
3541 4431 4.011966 TGAGCTCAATGACACACTGAAT 57.988 40.909 15.67 0.00 0.00 2.57
3542 4432 3.473923 TGAGCTCAATGACACACTGAA 57.526 42.857 15.67 0.00 0.00 3.02
3543 4433 3.473923 TTGAGCTCAATGACACACTGA 57.526 42.857 25.16 0.00 0.00 3.41
3544 4434 4.473199 CAATTGAGCTCAATGACACACTG 58.527 43.478 36.16 25.60 45.06 3.66
3545 4435 3.504906 CCAATTGAGCTCAATGACACACT 59.495 43.478 36.16 19.70 45.06 3.55
3546 4436 3.366679 CCCAATTGAGCTCAATGACACAC 60.367 47.826 36.16 0.00 45.06 3.82
3547 4437 2.821378 CCCAATTGAGCTCAATGACACA 59.179 45.455 36.16 13.34 45.06 3.72
3548 4438 2.165030 CCCCAATTGAGCTCAATGACAC 59.835 50.000 36.16 0.00 45.06 3.67
3549 4439 2.041485 TCCCCAATTGAGCTCAATGACA 59.959 45.455 36.16 18.97 45.06 3.58
3550 4440 2.424956 GTCCCCAATTGAGCTCAATGAC 59.575 50.000 36.16 31.42 45.06 3.06
3551 4441 2.726821 GTCCCCAATTGAGCTCAATGA 58.273 47.619 36.16 26.66 45.06 2.57
3552 4442 1.402968 CGTCCCCAATTGAGCTCAATG 59.597 52.381 36.16 28.03 45.06 2.82
3554 4444 0.400213 ACGTCCCCAATTGAGCTCAA 59.600 50.000 30.23 30.23 40.51 3.02
3555 4445 0.321564 CACGTCCCCAATTGAGCTCA 60.322 55.000 13.74 13.74 0.00 4.26
3556 4446 1.026718 CCACGTCCCCAATTGAGCTC 61.027 60.000 6.82 6.82 0.00 4.09
3557 4447 1.002134 CCACGTCCCCAATTGAGCT 60.002 57.895 7.12 0.00 0.00 4.09
3558 4448 2.046285 CCCACGTCCCCAATTGAGC 61.046 63.158 7.12 0.00 0.00 4.26
3559 4449 0.676782 GTCCCACGTCCCCAATTGAG 60.677 60.000 7.12 0.00 0.00 3.02
3560 4450 1.377229 GTCCCACGTCCCCAATTGA 59.623 57.895 7.12 0.00 0.00 2.57
3561 4451 1.677633 GGTCCCACGTCCCCAATTG 60.678 63.158 0.00 0.00 0.00 2.32
3571 4461 0.677731 AATGACATGCTGGTCCCACG 60.678 55.000 0.00 0.00 36.97 4.94
3617 4536 1.956477 GGCAATGTCCCATGGATGTAC 59.044 52.381 15.22 6.44 32.73 2.90
3633 4554 2.044053 GCAGTATGGGCCTGGCAA 60.044 61.111 22.05 8.51 35.86 4.52
3637 4558 2.292267 CACTAAAGCAGTATGGGCCTG 58.708 52.381 4.53 0.00 34.98 4.85
3698 4683 2.879026 GGTTCTGTCACTGGGAAAACTC 59.121 50.000 0.00 0.00 0.00 3.01
3786 4771 1.277273 CTGACACTGGGCTCAGAATCA 59.723 52.381 23.49 20.73 43.49 2.57
3797 4782 1.735920 GTGCTCGAGCTGACACTGG 60.736 63.158 35.27 0.00 42.66 4.00
3879 4873 9.699985 GGATCGTATAGTAAATATGTACAGTCG 57.300 37.037 5.84 5.12 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.