Multiple sequence alignment - TraesCS1B01G398000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G398000 chr1B 100.000 1771 0 0 1 1771 629095599 629097369 0.000000e+00 3271.0
1 TraesCS1B01G398000 chr1B 89.439 1231 91 12 547 1771 629034949 629036146 0.000000e+00 1517.0
2 TraesCS1B01G398000 chr1B 100.000 600 0 0 1957 2556 629097555 629098154 0.000000e+00 1109.0
3 TraesCS1B01G398000 chr1B 83.729 885 107 18 817 1694 628930325 628931179 0.000000e+00 802.0
4 TraesCS1B01G398000 chr1B 83.371 884 111 16 817 1694 628860939 628861792 0.000000e+00 785.0
5 TraesCS1B01G398000 chr1B 83.277 885 111 17 817 1694 628816984 628817838 0.000000e+00 780.0
6 TraesCS1B01G398000 chr1B 90.338 414 37 3 2144 2556 628918853 628919264 8.050000e-150 540.0
7 TraesCS1B01G398000 chr1B 90.338 414 37 3 2144 2556 628995188 628995599 8.050000e-150 540.0
8 TraesCS1B01G398000 chr1B 90.338 414 37 3 2144 2556 629054544 629054955 8.050000e-150 540.0
9 TraesCS1B01G398000 chr1B 83.303 557 75 10 2012 2556 628922682 628923232 4.910000e-137 497.0
10 TraesCS1B01G398000 chr1B 83.032 554 82 7 2012 2556 629058394 629058944 2.280000e-135 492.0
11 TraesCS1B01G398000 chr1B 86.986 438 45 6 870 1304 628678311 628678739 1.380000e-132 483.0
12 TraesCS1B01G398000 chr1B 82.765 557 78 10 2012 2556 628999002 628999552 4.950000e-132 481.0
13 TraesCS1B01G398000 chr1B 81.000 600 80 22 823 1405 629053757 629054339 1.800000e-121 446.0
14 TraesCS1B01G398000 chr1B 78.931 636 94 21 1059 1665 628804514 628805138 1.840000e-106 396.0
15 TraesCS1B01G398000 chr1B 86.646 322 36 5 1958 2276 628812375 628812692 1.460000e-92 350.0
16 TraesCS1B01G398000 chr1B 87.156 218 24 3 1958 2174 628976445 628976659 7.060000e-61 244.0
17 TraesCS1B01G398000 chr1B 87.156 218 23 3 1958 2174 628857378 628857591 2.540000e-60 243.0
18 TraesCS1B01G398000 chr1B 91.716 169 9 2 1603 1771 628905247 628905410 1.980000e-56 230.0
19 TraesCS1B01G398000 chr1B 91.716 169 9 2 1603 1771 628981234 628981397 1.980000e-56 230.0
20 TraesCS1B01G398000 chr1B 91.124 169 9 3 1603 1771 628867739 628867901 9.200000e-55 224.0
21 TraesCS1B01G398000 chr1B 90.533 169 11 2 1603 1771 628818397 628818560 4.280000e-53 219.0
22 TraesCS1B01G398000 chr1D 84.660 1382 152 22 318 1679 458279668 458281009 0.000000e+00 1323.0
23 TraesCS1B01G398000 chr1D 83.052 1304 147 26 409 1696 458169039 458170284 0.000000e+00 1116.0
24 TraesCS1B01G398000 chr1D 85.179 587 66 17 1958 2537 458239258 458239830 1.320000e-162 582.0
25 TraesCS1B01G398000 chr1D 84.006 619 76 18 1081 1694 458233935 458234535 7.930000e-160 573.0
26 TraesCS1B01G398000 chr1D 81.764 669 71 23 823 1469 458285721 458286360 1.750000e-141 512.0
27 TraesCS1B01G398000 chr1D 85.545 505 50 11 318 809 458277867 458278361 8.160000e-140 507.0
28 TraesCS1B01G398000 chr1D 85.170 499 56 9 318 805 458254628 458255119 1.770000e-136 496.0
29 TraesCS1B01G398000 chr1D 92.308 169 8 2 1603 1771 458170898 458171061 4.250000e-58 235.0
30 TraesCS1B01G398000 chr1D 91.716 169 9 2 1603 1771 458281558 458281721 1.980000e-56 230.0
31 TraesCS1B01G398000 chr1D 93.023 43 3 0 823 865 458272876 458272918 2.120000e-06 63.9
32 TraesCS1B01G398000 chr1A 84.271 1386 163 22 318 1679 550829063 550830417 0.000000e+00 1301.0
33 TraesCS1B01G398000 chr1A 85.118 1102 125 15 605 1694 550700138 550701212 0.000000e+00 1090.0
34 TraesCS1B01G398000 chr1A 91.697 554 42 3 2004 2556 550708211 550708761 0.000000e+00 765.0
35 TraesCS1B01G398000 chr1A 85.644 606 66 17 1958 2556 550656306 550656897 3.610000e-173 617.0
36 TraesCS1B01G398000 chr1A 86.083 503 52 8 318 809 550697661 550698156 2.250000e-145 525.0
37 TraesCS1B01G398000 chr1A 85.336 491 53 8 318 796 550659984 550660467 8.220000e-135 490.0
38 TraesCS1B01G398000 chr1A 84.356 505 57 14 318 809 550827268 550827763 2.300000e-130 475.0
39 TraesCS1B01G398000 chr1A 85.372 376 39 11 1387 1762 550664676 550665035 2.400000e-100 375.0
40 TraesCS1B01G398000 chr1A 78.166 687 80 37 823 1469 550835535 550836191 8.640000e-100 374.0
41 TraesCS1B01G398000 chr1A 92.308 169 8 2 1603 1771 550830966 550831129 4.250000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G398000 chr1B 629095599 629098154 2555 False 2190.000000 3271 100.000000 1 2556 2 chr1B.!!$F15 2555
1 TraesCS1B01G398000 chr1B 629034949 629036146 1197 False 1517.000000 1517 89.439000 547 1771 1 chr1B.!!$F9 1224
2 TraesCS1B01G398000 chr1B 628930325 628931179 854 False 802.000000 802 83.729000 817 1694 1 chr1B.!!$F6 877
3 TraesCS1B01G398000 chr1B 628918853 628923232 4379 False 518.500000 540 86.820500 2012 2556 2 chr1B.!!$F12 544
4 TraesCS1B01G398000 chr1B 628857378 628861792 4414 False 514.000000 785 85.263500 817 2174 2 chr1B.!!$F11 1357
5 TraesCS1B01G398000 chr1B 628995188 628999552 4364 False 510.500000 540 86.551500 2012 2556 2 chr1B.!!$F13 544
6 TraesCS1B01G398000 chr1B 628816984 628818560 1576 False 499.500000 780 86.905000 817 1771 2 chr1B.!!$F10 954
7 TraesCS1B01G398000 chr1B 629053757 629058944 5187 False 492.666667 540 84.790000 823 2556 3 chr1B.!!$F14 1733
8 TraesCS1B01G398000 chr1B 628804514 628805138 624 False 396.000000 396 78.931000 1059 1665 1 chr1B.!!$F2 606
9 TraesCS1B01G398000 chr1D 458277867 458281721 3854 False 686.666667 1323 87.307000 318 1771 3 chr1D.!!$F7 1453
10 TraesCS1B01G398000 chr1D 458169039 458171061 2022 False 675.500000 1116 87.680000 409 1771 2 chr1D.!!$F6 1362
11 TraesCS1B01G398000 chr1D 458239258 458239830 572 False 582.000000 582 85.179000 1958 2537 1 chr1D.!!$F2 579
12 TraesCS1B01G398000 chr1D 458233935 458234535 600 False 573.000000 573 84.006000 1081 1694 1 chr1D.!!$F1 613
13 TraesCS1B01G398000 chr1D 458285721 458286360 639 False 512.000000 512 81.764000 823 1469 1 chr1D.!!$F5 646
14 TraesCS1B01G398000 chr1A 550697661 550701212 3551 False 807.500000 1090 85.600500 318 1694 2 chr1A.!!$F5 1376
15 TraesCS1B01G398000 chr1A 550708211 550708761 550 False 765.000000 765 91.697000 2004 2556 1 chr1A.!!$F2 552
16 TraesCS1B01G398000 chr1A 550827268 550831129 3861 False 670.333333 1301 86.978333 318 1771 3 chr1A.!!$F6 1453
17 TraesCS1B01G398000 chr1A 550656306 550660467 4161 False 553.500000 617 85.490000 318 2556 2 chr1A.!!$F4 2238
18 TraesCS1B01G398000 chr1A 550835535 550836191 656 False 374.000000 374 78.166000 823 1469 1 chr1A.!!$F3 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.177141 GGTTAGCCCGTGTATGAGCA 59.823 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 5888 0.026285 CTAGCACGCACGGCATAAAC 59.974 55.0 6.35 0.0 0.0 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.464452 AGGTTAGCCCGTGTATGAGC 59.536 55.000 0.00 0.00 38.74 4.26
21 22 0.177141 GGTTAGCCCGTGTATGAGCA 59.823 55.000 0.00 0.00 0.00 4.26
22 23 1.571919 GTTAGCCCGTGTATGAGCAG 58.428 55.000 0.00 0.00 0.00 4.24
23 24 0.464036 TTAGCCCGTGTATGAGCAGG 59.536 55.000 0.00 0.00 0.00 4.85
24 25 2.028125 TAGCCCGTGTATGAGCAGGC 62.028 60.000 0.00 0.00 40.79 4.85
25 26 2.203070 CCCGTGTATGAGCAGGCC 60.203 66.667 0.00 0.00 0.00 5.19
26 27 2.735772 CCCGTGTATGAGCAGGCCT 61.736 63.158 0.00 0.00 0.00 5.19
27 28 1.227380 CCGTGTATGAGCAGGCCTC 60.227 63.158 0.00 0.00 41.15 4.70
30 31 0.807667 GTGTATGAGCAGGCCTCGTG 60.808 60.000 0.00 0.00 43.82 4.35
31 32 1.884926 GTATGAGCAGGCCTCGTGC 60.885 63.158 0.00 4.34 43.82 5.34
32 33 2.358372 TATGAGCAGGCCTCGTGCA 61.358 57.895 16.94 7.33 46.01 4.57
33 34 2.578163 TATGAGCAGGCCTCGTGCAC 62.578 60.000 16.94 6.82 46.01 4.57
36 37 3.807538 GCAGGCCTCGTGCACATG 61.808 66.667 18.64 8.38 43.54 3.21
37 38 3.807538 CAGGCCTCGTGCACATGC 61.808 66.667 18.64 15.08 43.89 4.06
47 48 4.085876 GCACATGCAGGTGGTTCT 57.914 55.556 30.45 0.00 41.59 3.01
51 52 2.165167 CACATGCAGGTGGTTCTCAAT 58.835 47.619 23.36 0.00 35.13 2.57
53 54 2.821969 ACATGCAGGTGGTTCTCAATTC 59.178 45.455 1.71 0.00 0.00 2.17
54 55 1.522668 TGCAGGTGGTTCTCAATTCG 58.477 50.000 0.00 0.00 0.00 3.34
56 57 1.880027 GCAGGTGGTTCTCAATTCGTT 59.120 47.619 0.00 0.00 0.00 3.85
61 62 5.468746 CAGGTGGTTCTCAATTCGTTAGAAA 59.531 40.000 0.00 0.00 40.15 2.52
63 64 5.237779 GGTGGTTCTCAATTCGTTAGAAACA 59.762 40.000 0.00 0.00 42.96 2.83
65 66 7.118680 GGTGGTTCTCAATTCGTTAGAAACATA 59.881 37.037 5.44 0.00 45.75 2.29
66 67 7.955864 GTGGTTCTCAATTCGTTAGAAACATAC 59.044 37.037 5.44 0.00 45.75 2.39
67 68 7.876068 TGGTTCTCAATTCGTTAGAAACATACT 59.124 33.333 0.00 0.00 40.94 2.12
69 70 7.827819 TCTCAATTCGTTAGAAACATACTGG 57.172 36.000 0.00 0.00 40.15 4.00
72 73 6.938030 TCAATTCGTTAGAAACATACTGGGTT 59.062 34.615 0.00 0.00 40.15 4.11
73 74 6.980051 ATTCGTTAGAAACATACTGGGTTC 57.020 37.500 0.00 0.00 40.15 3.62
74 75 5.471556 TCGTTAGAAACATACTGGGTTCA 57.528 39.130 0.00 0.00 0.00 3.18
76 77 4.630069 CGTTAGAAACATACTGGGTTCAGG 59.370 45.833 0.00 0.00 44.99 3.86
79 80 7.336396 GTTAGAAACATACTGGGTTCAGGTAT 58.664 38.462 0.00 0.00 44.99 2.73
82 83 4.402056 ACATACTGGGTTCAGGTATTCG 57.598 45.455 0.00 0.00 44.99 3.34
83 84 3.134081 ACATACTGGGTTCAGGTATTCGG 59.866 47.826 0.00 0.00 44.99 4.30
84 85 0.909623 ACTGGGTTCAGGTATTCGGG 59.090 55.000 0.00 0.00 44.99 5.14
85 86 0.180406 CTGGGTTCAGGTATTCGGGG 59.820 60.000 0.00 0.00 37.36 5.73
86 87 1.276140 TGGGTTCAGGTATTCGGGGG 61.276 60.000 0.00 0.00 0.00 5.40
88 89 0.622136 GGTTCAGGTATTCGGGGGTT 59.378 55.000 0.00 0.00 0.00 4.11
90 91 0.538118 TTCAGGTATTCGGGGGTTCG 59.462 55.000 0.00 0.00 0.00 3.95
96 97 2.665854 TTCGGGGGTTCGAAACGC 60.666 61.111 21.10 21.10 44.70 4.84
101 102 2.745100 GGGTTCGAAACGCCTCCC 60.745 66.667 7.19 5.27 38.30 4.30
103 104 1.740664 GGTTCGAAACGCCTCCCTC 60.741 63.158 0.00 0.00 0.00 4.30
104 105 2.092882 GTTCGAAACGCCTCCCTCG 61.093 63.158 0.00 0.00 0.00 4.63
105 106 3.927163 TTCGAAACGCCTCCCTCGC 62.927 63.158 0.00 0.00 0.00 5.03
107 108 4.083862 GAAACGCCTCCCTCGCCT 62.084 66.667 0.00 0.00 0.00 5.52
114 115 1.905843 CCTCCCTCGCCTGATCGAT 60.906 63.158 0.00 0.00 37.87 3.59
115 116 1.583986 CTCCCTCGCCTGATCGATC 59.416 63.158 18.72 18.72 37.87 3.69
118 119 2.642129 CTCGCCTGATCGATCGCT 59.358 61.111 20.03 0.00 37.87 4.93
119 120 1.441849 CTCGCCTGATCGATCGCTC 60.442 63.158 20.03 11.54 37.87 5.03
120 121 2.798675 CGCCTGATCGATCGCTCG 60.799 66.667 20.03 17.22 46.41 5.03
122 123 2.798675 CCTGATCGATCGCTCGCG 60.799 66.667 20.03 0.00 44.65 5.87
123 124 2.798675 CTGATCGATCGCTCGCGG 60.799 66.667 20.03 0.00 44.65 6.46
124 125 4.328231 TGATCGATCGCTCGCGGG 62.328 66.667 20.03 2.60 44.65 6.13
144 145 4.386413 AGCCGTTTGGAGCTGAAG 57.614 55.556 0.00 0.00 38.11 3.02
145 146 1.968540 AGCCGTTTGGAGCTGAAGC 60.969 57.895 0.00 0.00 38.11 3.86
147 148 1.600636 CCGTTTGGAGCTGAAGCCA 60.601 57.895 0.00 0.00 43.38 4.75
148 149 1.576421 CGTTTGGAGCTGAAGCCAC 59.424 57.895 0.00 0.00 43.38 5.01
181 182 1.294780 CCTGCGGCTCTTCTCAAGT 59.705 57.895 0.00 0.00 0.00 3.16
182 183 0.321122 CCTGCGGCTCTTCTCAAGTT 60.321 55.000 0.00 0.00 0.00 2.66
183 184 0.795085 CTGCGGCTCTTCTCAAGTTG 59.205 55.000 0.00 0.00 0.00 3.16
184 185 1.230635 TGCGGCTCTTCTCAAGTTGC 61.231 55.000 0.00 0.00 0.00 4.17
185 186 1.230635 GCGGCTCTTCTCAAGTTGCA 61.231 55.000 0.00 0.00 33.33 4.08
186 187 1.446907 CGGCTCTTCTCAAGTTGCAT 58.553 50.000 0.00 0.00 33.33 3.96
187 188 2.621338 CGGCTCTTCTCAAGTTGCATA 58.379 47.619 0.00 0.00 33.33 3.14
192 193 5.586243 GGCTCTTCTCAAGTTGCATATACAA 59.414 40.000 0.00 0.00 33.33 2.41
200 201 1.384525 TTGCATATACAACACGCCCC 58.615 50.000 0.00 0.00 0.00 5.80
203 204 1.878953 CATATACAACACGCCCCTCC 58.121 55.000 0.00 0.00 0.00 4.30
204 205 0.763035 ATATACAACACGCCCCTCCC 59.237 55.000 0.00 0.00 0.00 4.30
205 206 1.678598 TATACAACACGCCCCTCCCG 61.679 60.000 0.00 0.00 0.00 5.14
229 230 3.635204 GCAATCAGCCTCGATCCG 58.365 61.111 0.00 0.00 37.23 4.18
231 232 1.227350 CAATCAGCCTCGATCCGCA 60.227 57.895 0.00 0.00 0.00 5.69
233 234 0.602106 AATCAGCCTCGATCCGCATG 60.602 55.000 0.00 0.00 0.00 4.06
235 236 3.157252 AGCCTCGATCCGCATGGT 61.157 61.111 0.00 0.00 36.30 3.55
236 237 2.969238 GCCTCGATCCGCATGGTG 60.969 66.667 0.00 0.00 36.30 4.17
237 238 2.969238 CCTCGATCCGCATGGTGC 60.969 66.667 0.00 0.00 40.69 5.01
238 239 2.202919 CTCGATCCGCATGGTGCA 60.203 61.111 2.63 0.00 45.36 4.57
240 241 3.928769 CGATCCGCATGGTGCACG 61.929 66.667 11.45 0.00 45.36 5.34
242 243 4.783621 ATCCGCATGGTGCACGCT 62.784 61.111 11.45 0.00 45.36 5.07
264 265 4.479993 GGCTGACAGGCTCGCCAT 62.480 66.667 21.11 0.00 38.04 4.40
265 266 2.894387 GCTGACAGGCTCGCCATC 60.894 66.667 11.02 7.88 38.92 3.51
267 268 3.746949 CTGACAGGCTCGCCATCCC 62.747 68.421 11.02 0.00 38.92 3.85
272 273 2.908940 GGCTCGCCATCCCCAATG 60.909 66.667 2.41 0.00 35.81 2.82
273 274 2.192979 GCTCGCCATCCCCAATGA 59.807 61.111 0.00 0.00 37.59 2.57
275 276 1.450531 GCTCGCCATCCCCAATGAAG 61.451 60.000 0.00 0.00 37.59 3.02
281 282 2.167075 GCCATCCCCAATGAAGAAGTTG 59.833 50.000 0.00 0.00 37.59 3.16
284 285 5.016173 CCATCCCCAATGAAGAAGTTGTAA 58.984 41.667 0.00 0.00 37.59 2.41
287 288 3.193479 CCCCAATGAAGAAGTTGTAAGCC 59.807 47.826 0.00 0.00 0.00 4.35
288 289 3.826157 CCCAATGAAGAAGTTGTAAGCCA 59.174 43.478 0.00 0.00 0.00 4.75
289 290 4.321230 CCCAATGAAGAAGTTGTAAGCCAC 60.321 45.833 0.00 0.00 0.00 5.01
290 291 4.520492 CCAATGAAGAAGTTGTAAGCCACT 59.480 41.667 0.00 0.00 0.00 4.00
291 292 5.455392 CAATGAAGAAGTTGTAAGCCACTG 58.545 41.667 0.00 0.00 0.00 3.66
292 293 4.415881 TGAAGAAGTTGTAAGCCACTGA 57.584 40.909 0.00 0.00 0.00 3.41
293 294 4.973168 TGAAGAAGTTGTAAGCCACTGAT 58.027 39.130 0.00 0.00 0.00 2.90
294 295 4.997395 TGAAGAAGTTGTAAGCCACTGATC 59.003 41.667 0.00 0.00 0.00 2.92
297 298 5.564550 AGAAGTTGTAAGCCACTGATCAAT 58.435 37.500 0.00 0.00 0.00 2.57
298 299 6.711277 AGAAGTTGTAAGCCACTGATCAATA 58.289 36.000 0.00 0.00 0.00 1.90
300 301 7.831193 AGAAGTTGTAAGCCACTGATCAATAAT 59.169 33.333 0.00 0.00 0.00 1.28
301 302 7.944729 AGTTGTAAGCCACTGATCAATAATT 57.055 32.000 0.00 0.00 0.00 1.40
302 303 7.989826 AGTTGTAAGCCACTGATCAATAATTC 58.010 34.615 0.00 0.00 0.00 2.17
306 307 5.841957 AGCCACTGATCAATAATTCAACC 57.158 39.130 0.00 0.00 0.00 3.77
308 309 5.716228 AGCCACTGATCAATAATTCAACCAA 59.284 36.000 0.00 0.00 0.00 3.67
309 310 6.038356 GCCACTGATCAATAATTCAACCAAG 58.962 40.000 0.00 0.00 0.00 3.61
311 312 6.406177 CCACTGATCAATAATTCAACCAAGGG 60.406 42.308 0.00 0.00 0.00 3.95
314 315 7.893302 ACTGATCAATAATTCAACCAAGGGTAA 59.107 33.333 0.00 0.00 33.12 2.85
315 316 8.292444 TGATCAATAATTCAACCAAGGGTAAG 57.708 34.615 0.00 0.00 33.12 2.34
316 317 6.524101 TCAATAATTCAACCAAGGGTAAGC 57.476 37.500 0.00 0.00 33.12 3.09
351 352 5.949952 ACAAAAGTTGAAAGTGGTAGGTCTT 59.050 36.000 0.00 0.00 0.00 3.01
409 411 5.888161 AGCTTAACTGAACAATGGATAAGGG 59.112 40.000 0.00 0.00 0.00 3.95
420 422 9.927081 GAACAATGGATAAGGGATAATGGATAT 57.073 33.333 0.00 0.00 0.00 1.63
484 486 4.377841 GCAATCGTCTTTGTTCTTCTCCTG 60.378 45.833 0.00 0.00 0.00 3.86
494 496 3.381272 TGTTCTTCTCCTGCCTTTGTTTG 59.619 43.478 0.00 0.00 0.00 2.93
594 602 7.201470 GGTTCCTACGTAGCTTAATTAACACAC 60.201 40.741 17.41 0.00 0.00 3.82
655 664 5.590259 TGGATGGCTAAATTAAAGTCAGAGC 59.410 40.000 2.03 0.00 30.90 4.09
712 721 3.500299 GCTTCTTCTCTTGGGACTGTTTC 59.500 47.826 0.00 0.00 0.00 2.78
820 834 5.670485 TGAGTATGCAACACTTATCCGAAT 58.330 37.500 5.86 0.00 0.00 3.34
908 5075 1.203994 GCTACTCGCTGTGTAAAGGGA 59.796 52.381 0.00 0.00 37.54 4.20
938 5113 1.371758 CAGCTGTGAGTGTACGCGT 60.372 57.895 19.17 19.17 0.00 6.01
939 5114 1.371758 AGCTGTGAGTGTACGCGTG 60.372 57.895 24.59 1.96 0.00 5.34
970 5145 1.692173 GCCCGGCCATAGTTCTGGTA 61.692 60.000 2.24 0.00 38.63 3.25
1000 5180 4.812476 CCGTCCATTCGGCGAGCA 62.812 66.667 10.46 0.00 43.96 4.26
1089 5313 5.234757 GCGGTGTTTAATCATATCAACCGTA 59.765 40.000 11.95 0.00 38.99 4.02
1095 5319 7.223193 TGTTTAATCATATCAACCGTAACCTCG 59.777 37.037 0.00 0.00 0.00 4.63
1301 5533 3.645975 CGCCGCACCGTGAGTTTT 61.646 61.111 1.65 0.00 0.00 2.43
1396 5641 1.000521 TCGCGGGGTCCTCTTCTTA 60.001 57.895 6.13 0.00 0.00 2.10
1397 5642 0.396695 TCGCGGGGTCCTCTTCTTAT 60.397 55.000 6.13 0.00 0.00 1.73
1398 5643 0.032267 CGCGGGGTCCTCTTCTTATC 59.968 60.000 0.00 0.00 0.00 1.75
1449 5694 3.898509 CGGCTCGAGGCTGGAGAG 61.899 72.222 32.85 17.09 43.23 3.20
1450 5695 2.757917 GGCTCGAGGCTGGAGAGT 60.758 66.667 30.02 0.00 41.46 3.24
1452 5697 1.594310 GCTCGAGGCTGGAGAGTTT 59.406 57.895 27.91 0.00 38.06 2.66
1454 5699 0.891373 CTCGAGGCTGGAGAGTTTCA 59.109 55.000 20.51 0.00 33.27 2.69
1455 5700 1.273606 CTCGAGGCTGGAGAGTTTCAA 59.726 52.381 20.51 0.00 33.27 2.69
1460 5705 0.793250 GCTGGAGAGTTTCAAGCGTC 59.207 55.000 0.00 0.00 42.82 5.19
1461 5706 1.063806 CTGGAGAGTTTCAAGCGTCG 58.936 55.000 0.00 0.00 0.00 5.12
1462 5707 0.387929 TGGAGAGTTTCAAGCGTCGT 59.612 50.000 0.00 0.00 0.00 4.34
1464 5709 1.602165 GGAGAGTTTCAAGCGTCGTCA 60.602 52.381 0.00 0.00 0.00 4.35
1466 5711 0.507358 GAGTTTCAAGCGTCGTCACC 59.493 55.000 0.00 0.00 0.00 4.02
1467 5712 0.104304 AGTTTCAAGCGTCGTCACCT 59.896 50.000 0.00 0.00 0.00 4.00
1468 5713 0.935196 GTTTCAAGCGTCGTCACCTT 59.065 50.000 0.00 0.00 0.00 3.50
1469 5714 1.070776 GTTTCAAGCGTCGTCACCTTC 60.071 52.381 0.00 0.00 0.00 3.46
1470 5715 0.387929 TTCAAGCGTCGTCACCTTCT 59.612 50.000 0.00 0.00 0.00 2.85
1471 5716 1.241165 TCAAGCGTCGTCACCTTCTA 58.759 50.000 0.00 0.00 0.00 2.10
1476 5721 1.990799 CGTCGTCACCTTCTAATGCA 58.009 50.000 0.00 0.00 0.00 3.96
1477 5722 1.654105 CGTCGTCACCTTCTAATGCAC 59.346 52.381 0.00 0.00 0.00 4.57
1478 5723 2.683968 GTCGTCACCTTCTAATGCACA 58.316 47.619 0.00 0.00 0.00 4.57
1481 5726 3.745975 TCGTCACCTTCTAATGCACAAAG 59.254 43.478 0.00 0.00 0.00 2.77
1482 5727 3.498397 CGTCACCTTCTAATGCACAAAGT 59.502 43.478 0.00 0.00 0.00 2.66
1484 5729 5.505654 CGTCACCTTCTAATGCACAAAGTTT 60.506 40.000 0.00 0.00 0.00 2.66
1486 5731 5.592282 TCACCTTCTAATGCACAAAGTTTGA 59.408 36.000 22.23 0.00 0.00 2.69
1487 5732 6.096141 TCACCTTCTAATGCACAAAGTTTGAA 59.904 34.615 22.23 7.61 0.00 2.69
1488 5733 6.418819 CACCTTCTAATGCACAAAGTTTGAAG 59.581 38.462 22.23 14.13 35.74 3.02
1489 5734 6.096846 ACCTTCTAATGCACAAAGTTTGAAGT 59.903 34.615 22.23 8.82 34.86 3.01
1491 5736 6.449635 TCTAATGCACAAAGTTTGAAGTGT 57.550 33.333 22.23 6.82 34.59 3.55
1492 5737 7.561021 TCTAATGCACAAAGTTTGAAGTGTA 57.439 32.000 22.23 9.90 34.59 2.90
1496 5741 6.935741 TGCACAAAGTTTGAAGTGTACTAT 57.064 33.333 22.23 0.00 34.59 2.12
1500 5745 9.199982 GCACAAAGTTTGAAGTGTACTATAGTA 57.800 33.333 22.23 8.59 34.59 1.82
1520 5765 8.853469 ATAGTATTAGTCTTTACTGTTCGTGC 57.147 34.615 5.74 0.00 36.36 5.34
1521 5766 6.684686 AGTATTAGTCTTTACTGTTCGTGCA 58.315 36.000 0.00 0.00 36.36 4.57
1522 5767 5.840940 ATTAGTCTTTACTGTTCGTGCAC 57.159 39.130 6.82 6.82 36.36 4.57
1525 5770 3.555956 AGTCTTTACTGTTCGTGCACAAG 59.444 43.478 18.64 10.10 33.57 3.16
1543 5788 5.640732 CACAAGTTGCTTAGTGTTGAAAGT 58.359 37.500 1.81 0.00 0.00 2.66
1544 5789 5.739161 CACAAGTTGCTTAGTGTTGAAAGTC 59.261 40.000 1.81 0.00 0.00 3.01
1545 5790 5.648092 ACAAGTTGCTTAGTGTTGAAAGTCT 59.352 36.000 1.81 0.00 0.00 3.24
1546 5791 5.741388 AGTTGCTTAGTGTTGAAAGTCTG 57.259 39.130 0.00 0.00 0.00 3.51
1547 5792 5.428253 AGTTGCTTAGTGTTGAAAGTCTGA 58.572 37.500 0.00 0.00 0.00 3.27
1549 5794 6.374333 AGTTGCTTAGTGTTGAAAGTCTGAAA 59.626 34.615 0.00 0.00 0.00 2.69
1550 5795 6.119144 TGCTTAGTGTTGAAAGTCTGAAAC 57.881 37.500 0.00 0.00 0.00 2.78
1551 5796 5.880332 TGCTTAGTGTTGAAAGTCTGAAACT 59.120 36.000 0.00 0.00 41.10 2.66
1552 5797 7.045416 TGCTTAGTGTTGAAAGTCTGAAACTA 58.955 34.615 0.00 0.00 37.17 2.24
1554 5799 7.518529 GCTTAGTGTTGAAAGTCTGAAACTACC 60.519 40.741 0.00 0.00 37.17 3.18
1555 5800 5.741011 AGTGTTGAAAGTCTGAAACTACCA 58.259 37.500 0.00 0.00 37.17 3.25
1558 5803 6.912591 GTGTTGAAAGTCTGAAACTACCAATG 59.087 38.462 0.00 0.00 37.17 2.82
1559 5804 6.826231 TGTTGAAAGTCTGAAACTACCAATGA 59.174 34.615 0.00 0.00 37.17 2.57
1560 5805 7.338196 TGTTGAAAGTCTGAAACTACCAATGAA 59.662 33.333 0.00 0.00 37.17 2.57
1562 5807 8.463930 TGAAAGTCTGAAACTACCAATGAAAT 57.536 30.769 0.00 0.00 37.17 2.17
1563 5808 8.352201 TGAAAGTCTGAAACTACCAATGAAATG 58.648 33.333 0.00 0.00 37.17 2.32
1564 5809 8.463930 AAAGTCTGAAACTACCAATGAAATGA 57.536 30.769 0.00 0.00 37.17 2.57
1565 5810 8.641498 AAGTCTGAAACTACCAATGAAATGAT 57.359 30.769 0.00 0.00 37.17 2.45
1567 5812 9.739276 AGTCTGAAACTACCAATGAAATGATAA 57.261 29.630 0.00 0.00 36.07 1.75
1576 5821 7.338800 ACCAATGAAATGATAATGTCTCCAC 57.661 36.000 0.00 0.00 0.00 4.02
1577 5822 6.038603 ACCAATGAAATGATAATGTCTCCACG 59.961 38.462 0.00 0.00 0.00 4.94
1578 5823 6.038603 CCAATGAAATGATAATGTCTCCACGT 59.961 38.462 0.00 0.00 0.00 4.49
1579 5824 6.609237 ATGAAATGATAATGTCTCCACGTG 57.391 37.500 9.08 9.08 0.00 4.49
1581 5826 3.827008 ATGATAATGTCTCCACGTGCT 57.173 42.857 10.91 0.00 0.00 4.40
1582 5827 3.610040 TGATAATGTCTCCACGTGCTT 57.390 42.857 10.91 0.00 0.00 3.91
1583 5828 3.521560 TGATAATGTCTCCACGTGCTTC 58.478 45.455 10.91 0.70 0.00 3.86
1584 5829 2.380084 TAATGTCTCCACGTGCTTCC 57.620 50.000 10.91 0.00 0.00 3.46
1586 5831 0.687354 ATGTCTCCACGTGCTTCCTT 59.313 50.000 10.91 0.00 0.00 3.36
1590 5835 1.416401 TCTCCACGTGCTTCCTTCTTT 59.584 47.619 10.91 0.00 0.00 2.52
1591 5836 2.631062 TCTCCACGTGCTTCCTTCTTTA 59.369 45.455 10.91 0.00 0.00 1.85
1593 5838 4.003648 CTCCACGTGCTTCCTTCTTTATT 58.996 43.478 10.91 0.00 0.00 1.40
1594 5839 3.751175 TCCACGTGCTTCCTTCTTTATTG 59.249 43.478 10.91 0.00 0.00 1.90
1596 5841 4.378459 CCACGTGCTTCCTTCTTTATTGTC 60.378 45.833 10.91 0.00 0.00 3.18
1597 5842 4.452455 CACGTGCTTCCTTCTTTATTGTCT 59.548 41.667 0.82 0.00 0.00 3.41
1598 5843 4.452455 ACGTGCTTCCTTCTTTATTGTCTG 59.548 41.667 0.00 0.00 0.00 3.51
1599 5844 4.142816 CGTGCTTCCTTCTTTATTGTCTGG 60.143 45.833 0.00 0.00 0.00 3.86
1600 5845 5.003804 GTGCTTCCTTCTTTATTGTCTGGA 58.996 41.667 0.00 0.00 0.00 3.86
1601 5846 5.473504 GTGCTTCCTTCTTTATTGTCTGGAA 59.526 40.000 0.00 0.00 0.00 3.53
1602 5847 5.707298 TGCTTCCTTCTTTATTGTCTGGAAG 59.293 40.000 12.80 12.80 46.83 3.46
1603 5848 6.188400 CTTCCTTCTTTATTGTCTGGAAGC 57.812 41.667 0.00 0.00 41.35 3.86
1604 5849 4.589908 TCCTTCTTTATTGTCTGGAAGCC 58.410 43.478 0.00 0.00 34.03 4.35
1605 5850 3.375299 CCTTCTTTATTGTCTGGAAGCCG 59.625 47.826 0.00 0.00 34.03 5.52
1606 5851 3.695830 TCTTTATTGTCTGGAAGCCGT 57.304 42.857 0.00 0.00 0.00 5.68
1607 5852 4.015872 TCTTTATTGTCTGGAAGCCGTT 57.984 40.909 0.00 0.00 0.00 4.44
1608 5853 5.155278 TCTTTATTGTCTGGAAGCCGTTA 57.845 39.130 0.00 0.00 0.00 3.18
1609 5854 4.933400 TCTTTATTGTCTGGAAGCCGTTAC 59.067 41.667 0.00 0.00 0.00 2.50
1610 5855 4.546829 TTATTGTCTGGAAGCCGTTACT 57.453 40.909 0.00 0.00 0.00 2.24
1611 5856 2.922740 TTGTCTGGAAGCCGTTACTT 57.077 45.000 0.00 0.00 0.00 2.24
1612 5857 2.163818 TGTCTGGAAGCCGTTACTTG 57.836 50.000 0.00 0.00 0.00 3.16
1613 5858 0.796927 GTCTGGAAGCCGTTACTTGC 59.203 55.000 0.00 0.00 38.38 4.01
1614 5859 0.321298 TCTGGAAGCCGTTACTTGCC 60.321 55.000 0.00 0.00 37.20 4.52
1615 5860 0.605319 CTGGAAGCCGTTACTTGCCA 60.605 55.000 0.00 0.00 37.20 4.92
1616 5861 0.887387 TGGAAGCCGTTACTTGCCAC 60.887 55.000 0.00 0.00 37.20 5.01
1617 5862 1.495951 GAAGCCGTTACTTGCCACG 59.504 57.895 0.00 0.00 36.12 4.94
1619 5864 0.321298 AAGCCGTTACTTGCCACGAT 60.321 50.000 0.00 0.00 38.76 3.73
1620 5865 1.019278 AGCCGTTACTTGCCACGATG 61.019 55.000 0.00 0.00 38.76 3.84
1622 5867 0.390603 CCGTTACTTGCCACGATGGA 60.391 55.000 8.04 0.00 40.96 3.41
1623 5868 1.434555 CGTTACTTGCCACGATGGAA 58.565 50.000 8.04 0.00 40.96 3.53
1624 5869 2.006888 CGTTACTTGCCACGATGGAAT 58.993 47.619 8.04 0.00 40.96 3.01
1628 5873 1.271325 ACTTGCCACGATGGAATGTGA 60.271 47.619 8.04 0.00 40.96 3.58
1629 5874 2.019249 CTTGCCACGATGGAATGTGAT 58.981 47.619 8.04 0.00 40.96 3.06
1630 5875 2.127271 TGCCACGATGGAATGTGATT 57.873 45.000 8.04 0.00 40.96 2.57
1631 5876 2.445427 TGCCACGATGGAATGTGATTT 58.555 42.857 8.04 0.00 40.96 2.17
1634 5879 4.460731 TGCCACGATGGAATGTGATTTAAA 59.539 37.500 8.04 0.00 40.96 1.52
1635 5880 4.798387 GCCACGATGGAATGTGATTTAAAC 59.202 41.667 8.04 0.00 40.96 2.01
1636 5881 5.393027 GCCACGATGGAATGTGATTTAAACT 60.393 40.000 8.04 0.00 40.96 2.66
1655 5900 8.844441 TTAAACTATTTATGTTTATGCCGTGC 57.156 30.769 0.00 0.00 38.93 5.34
1656 5901 5.090652 ACTATTTATGTTTATGCCGTGCG 57.909 39.130 0.00 0.00 0.00 5.34
1657 5902 4.573201 ACTATTTATGTTTATGCCGTGCGT 59.427 37.500 0.00 0.00 0.00 5.24
1658 5903 2.815657 TTATGTTTATGCCGTGCGTG 57.184 45.000 1.42 0.00 0.00 5.34
1659 5904 0.375454 TATGTTTATGCCGTGCGTGC 59.625 50.000 1.42 0.00 0.00 5.34
1660 5905 1.305219 ATGTTTATGCCGTGCGTGCT 61.305 50.000 1.42 0.00 0.00 4.40
1661 5906 0.670854 TGTTTATGCCGTGCGTGCTA 60.671 50.000 1.42 0.00 0.00 3.49
1664 5909 0.108567 TTATGCCGTGCGTGCTAGAA 60.109 50.000 0.00 0.00 0.00 2.10
1667 5912 0.804544 TGCCGTGCGTGCTAGAATAC 60.805 55.000 0.00 0.00 0.00 1.89
1671 5916 1.846782 CGTGCGTGCTAGAATACACTC 59.153 52.381 0.00 0.00 34.58 3.51
1672 5917 2.478031 CGTGCGTGCTAGAATACACTCT 60.478 50.000 0.00 0.00 34.58 3.24
1673 5918 3.109619 GTGCGTGCTAGAATACACTCTC 58.890 50.000 0.00 0.00 34.58 3.20
1674 5919 2.223272 TGCGTGCTAGAATACACTCTCG 60.223 50.000 0.00 0.00 34.58 4.04
1675 5920 2.376956 CGTGCTAGAATACACTCTCGC 58.623 52.381 0.00 0.00 35.31 5.03
1677 5922 3.422417 TGCTAGAATACACTCTCGCAC 57.578 47.619 0.00 0.00 38.72 5.34
1678 5923 2.099263 TGCTAGAATACACTCTCGCACC 59.901 50.000 0.00 0.00 38.72 5.01
1679 5924 2.855187 GCTAGAATACACTCTCGCACCG 60.855 54.545 0.00 0.00 34.96 4.94
1680 5925 0.456221 AGAATACACTCTCGCACCGG 59.544 55.000 0.00 0.00 0.00 5.28
1681 5926 0.527817 GAATACACTCTCGCACCGGG 60.528 60.000 6.32 0.00 0.00 5.73
1682 5927 1.956629 AATACACTCTCGCACCGGGG 61.957 60.000 6.32 0.84 0.00 5.73
1686 5931 4.821589 CTCTCGCACCGGGGCTTC 62.822 72.222 29.20 0.00 0.00 3.86
1694 5939 4.821589 CCGGGGCTTCACTCGCTC 62.822 72.222 0.00 0.00 0.00 5.03
1695 5940 3.764466 CGGGGCTTCACTCGCTCT 61.764 66.667 0.00 0.00 0.00 4.09
1696 5941 2.185608 GGGGCTTCACTCGCTCTC 59.814 66.667 0.00 0.00 0.00 3.20
1697 5942 2.650116 GGGGCTTCACTCGCTCTCA 61.650 63.158 0.00 0.00 0.00 3.27
1698 5943 1.519719 GGGCTTCACTCGCTCTCAT 59.480 57.895 0.00 0.00 0.00 2.90
1699 5944 0.809241 GGGCTTCACTCGCTCTCATG 60.809 60.000 0.00 0.00 0.00 3.07
1700 5945 0.108424 GGCTTCACTCGCTCTCATGT 60.108 55.000 0.00 0.00 0.00 3.21
1701 5946 1.674221 GGCTTCACTCGCTCTCATGTT 60.674 52.381 0.00 0.00 0.00 2.71
1702 5947 2.072298 GCTTCACTCGCTCTCATGTTT 58.928 47.619 0.00 0.00 0.00 2.83
1703 5948 2.159734 GCTTCACTCGCTCTCATGTTTG 60.160 50.000 0.00 0.00 0.00 2.93
1704 5949 3.320626 CTTCACTCGCTCTCATGTTTGA 58.679 45.455 0.00 0.00 0.00 2.69
1705 5950 3.599730 TCACTCGCTCTCATGTTTGAT 57.400 42.857 0.00 0.00 0.00 2.57
1706 5951 4.718940 TCACTCGCTCTCATGTTTGATA 57.281 40.909 0.00 0.00 0.00 2.15
1708 5953 5.045872 TCACTCGCTCTCATGTTTGATATG 58.954 41.667 0.00 0.00 0.00 1.78
1709 5954 4.210746 CACTCGCTCTCATGTTTGATATGG 59.789 45.833 0.00 0.00 0.00 2.74
1710 5955 3.732212 TCGCTCTCATGTTTGATATGGG 58.268 45.455 0.00 0.00 0.00 4.00
1711 5956 3.134623 TCGCTCTCATGTTTGATATGGGT 59.865 43.478 0.00 0.00 0.00 4.51
1712 5957 3.249320 CGCTCTCATGTTTGATATGGGTG 59.751 47.826 0.00 0.00 0.00 4.61
1713 5958 3.004106 GCTCTCATGTTTGATATGGGTGC 59.996 47.826 0.00 0.00 38.05 5.01
1714 5959 4.201657 CTCTCATGTTTGATATGGGTGCA 58.798 43.478 0.00 0.00 0.00 4.57
1716 5961 5.939447 TCTCATGTTTGATATGGGTGCATA 58.061 37.500 0.00 0.00 0.00 3.14
1717 5962 5.764686 TCTCATGTTTGATATGGGTGCATAC 59.235 40.000 0.00 0.00 0.00 2.39
1719 5964 5.532032 TCATGTTTGATATGGGTGCATACTG 59.468 40.000 0.00 0.00 0.00 2.74
1720 5965 4.206375 TGTTTGATATGGGTGCATACTGG 58.794 43.478 0.00 0.00 0.00 4.00
1722 5967 2.700354 TGATATGGGTGCATACTGGGA 58.300 47.619 0.00 0.00 0.00 4.37
1723 5968 2.639347 TGATATGGGTGCATACTGGGAG 59.361 50.000 0.00 0.00 0.00 4.30
1726 5971 1.224592 GGGTGCATACTGGGAGTGG 59.775 63.158 0.00 0.00 0.00 4.00
1727 5972 1.224592 GGTGCATACTGGGAGTGGG 59.775 63.158 0.00 0.00 0.00 4.61
1728 5973 1.271840 GGTGCATACTGGGAGTGGGA 61.272 60.000 0.00 0.00 0.00 4.37
1731 5976 0.179000 GCATACTGGGAGTGGGAGTG 59.821 60.000 0.00 0.00 0.00 3.51
1733 5978 1.759445 CATACTGGGAGTGGGAGTGAG 59.241 57.143 0.00 0.00 0.00 3.51
1734 5979 0.784495 TACTGGGAGTGGGAGTGAGT 59.216 55.000 0.00 0.00 0.00 3.41
1735 5980 0.833834 ACTGGGAGTGGGAGTGAGTG 60.834 60.000 0.00 0.00 0.00 3.51
1736 5981 0.542938 CTGGGAGTGGGAGTGAGTGA 60.543 60.000 0.00 0.00 0.00 3.41
1737 5982 0.105194 TGGGAGTGGGAGTGAGTGAA 60.105 55.000 0.00 0.00 0.00 3.18
1738 5983 1.280457 GGGAGTGGGAGTGAGTGAAT 58.720 55.000 0.00 0.00 0.00 2.57
1739 5984 1.630878 GGGAGTGGGAGTGAGTGAATT 59.369 52.381 0.00 0.00 0.00 2.17
1740 5985 2.040412 GGGAGTGGGAGTGAGTGAATTT 59.960 50.000 0.00 0.00 0.00 1.82
1742 5987 3.753797 GGAGTGGGAGTGAGTGAATTTTC 59.246 47.826 0.00 0.00 0.00 2.29
1743 5988 3.403038 AGTGGGAGTGAGTGAATTTTCG 58.597 45.455 0.00 0.00 0.00 3.46
1745 5990 4.003648 GTGGGAGTGAGTGAATTTTCGAT 58.996 43.478 0.00 0.00 0.00 3.59
1746 5991 4.002982 TGGGAGTGAGTGAATTTTCGATG 58.997 43.478 0.00 0.00 0.00 3.84
1748 5993 4.093556 GGGAGTGAGTGAATTTTCGATGTC 59.906 45.833 0.00 0.00 0.00 3.06
1749 5994 4.690748 GGAGTGAGTGAATTTTCGATGTCA 59.309 41.667 0.00 0.00 0.00 3.58
1751 5996 6.128172 GGAGTGAGTGAATTTTCGATGTCAAT 60.128 38.462 0.00 0.00 0.00 2.57
1754 5999 8.137437 AGTGAGTGAATTTTCGATGTCAATTTT 58.863 29.630 0.00 0.00 0.00 1.82
1755 6000 8.420189 GTGAGTGAATTTTCGATGTCAATTTTC 58.580 33.333 0.00 0.00 0.00 2.29
1756 6001 8.134261 TGAGTGAATTTTCGATGTCAATTTTCA 58.866 29.630 0.00 0.00 0.00 2.69
1757 6002 8.511465 AGTGAATTTTCGATGTCAATTTTCAG 57.489 30.769 0.00 0.00 0.00 3.02
1758 6003 7.596248 AGTGAATTTTCGATGTCAATTTTCAGG 59.404 33.333 0.00 0.00 0.00 3.86
1759 6004 7.594758 GTGAATTTTCGATGTCAATTTTCAGGA 59.405 33.333 0.00 0.00 0.00 3.86
1760 6005 7.809331 TGAATTTTCGATGTCAATTTTCAGGAG 59.191 33.333 0.00 0.00 0.00 3.69
1761 6006 5.627499 TTTCGATGTCAATTTTCAGGAGG 57.373 39.130 0.00 0.00 0.00 4.30
1762 6007 3.009723 TCGATGTCAATTTTCAGGAGGC 58.990 45.455 0.00 0.00 0.00 4.70
1765 6010 4.679662 GATGTCAATTTTCAGGAGGCATG 58.320 43.478 0.00 0.00 0.00 4.06
1766 6011 3.765381 TGTCAATTTTCAGGAGGCATGA 58.235 40.909 0.00 0.00 0.00 3.07
1767 6012 4.346730 TGTCAATTTTCAGGAGGCATGAT 58.653 39.130 0.00 0.00 0.00 2.45
1768 6013 4.773674 TGTCAATTTTCAGGAGGCATGATT 59.226 37.500 0.00 0.00 0.00 2.57
1769 6014 5.246656 TGTCAATTTTCAGGAGGCATGATTT 59.753 36.000 0.00 0.00 0.00 2.17
1979 6224 6.675413 GGTGGGATTAAAACTTACCCTTTT 57.325 37.500 0.00 0.00 40.98 2.27
1980 6225 6.460781 GGTGGGATTAAAACTTACCCTTTTG 58.539 40.000 0.00 0.00 40.98 2.44
1981 6226 6.268158 GGTGGGATTAAAACTTACCCTTTTGA 59.732 38.462 0.00 0.00 40.98 2.69
1982 6227 7.038587 GGTGGGATTAAAACTTACCCTTTTGAT 60.039 37.037 0.00 0.00 40.98 2.57
1983 6228 8.372459 GTGGGATTAAAACTTACCCTTTTGATT 58.628 33.333 0.00 0.00 40.98 2.57
1984 6229 9.603189 TGGGATTAAAACTTACCCTTTTGATTA 57.397 29.630 0.00 0.00 40.98 1.75
1992 6237 8.422577 AACTTACCCTTTTGATTAAGAAGCAT 57.577 30.769 0.00 0.00 0.00 3.79
1993 6238 8.422577 ACTTACCCTTTTGATTAAGAAGCATT 57.577 30.769 0.00 0.00 0.00 3.56
1994 6239 9.528489 ACTTACCCTTTTGATTAAGAAGCATTA 57.472 29.630 0.00 0.00 0.00 1.90
2118 11102 0.317436 GTGTTGTTGCGCCGATGAAA 60.317 50.000 4.18 0.00 0.00 2.69
2125 11109 1.443802 TGCGCCGATGAAATACAACA 58.556 45.000 4.18 0.00 0.00 3.33
2265 11253 4.437682 TTGATGGTTAAGAGGGGCATAG 57.562 45.455 0.00 0.00 0.00 2.23
2278 11266 2.558359 GGGGCATAGACATGTAATTGGC 59.442 50.000 15.46 15.46 34.40 4.52
2306 11294 8.264347 TCTTGATTTGGTGTTGCTCAGTATATA 58.736 33.333 0.00 0.00 0.00 0.86
2313 11305 5.579511 GGTGTTGCTCAGTATATACAACGTT 59.420 40.000 15.18 0.00 42.68 3.99
2324 11316 9.313323 CAGTATATACAACGTTTGAAACAACAG 57.687 33.333 15.18 0.00 0.00 3.16
2442 11434 8.129840 TGACGTCTAAGATTAATAGAGCAAGAC 58.870 37.037 17.92 0.00 30.33 3.01
2529 11528 4.930696 TGACTCACCACCATTACTCTCTA 58.069 43.478 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.464452 GCTCATACACGGGCTAACCT 59.536 55.000 0.00 0.00 36.97 3.50
5 6 2.124293 CCTGCTCATACACGGGCTA 58.876 57.895 0.00 0.00 0.00 3.93
6 7 2.903357 CCTGCTCATACACGGGCT 59.097 61.111 0.00 0.00 0.00 5.19
9 10 1.227380 GAGGCCTGCTCATACACGG 60.227 63.158 12.00 0.00 0.00 4.94
10 11 1.589993 CGAGGCCTGCTCATACACG 60.590 63.158 12.00 0.00 0.00 4.49
11 12 0.807667 CACGAGGCCTGCTCATACAC 60.808 60.000 12.00 0.00 0.00 2.90
12 13 1.517361 CACGAGGCCTGCTCATACA 59.483 57.895 12.00 0.00 0.00 2.29
13 14 1.884926 GCACGAGGCCTGCTCATAC 60.885 63.158 12.00 0.00 36.11 2.39
17 18 3.965539 ATGTGCACGAGGCCTGCTC 62.966 63.158 12.00 10.57 43.89 4.26
18 19 4.025858 ATGTGCACGAGGCCTGCT 62.026 61.111 12.00 0.00 43.89 4.24
19 20 3.807538 CATGTGCACGAGGCCTGC 61.808 66.667 12.00 9.82 43.89 4.85
20 21 3.807538 GCATGTGCACGAGGCCTG 61.808 66.667 12.00 5.11 43.89 4.85
30 31 0.890542 TGAGAACCACCTGCATGTGC 60.891 55.000 15.87 3.69 42.50 4.57
31 32 1.608055 TTGAGAACCACCTGCATGTG 58.392 50.000 14.53 14.53 35.98 3.21
32 33 2.592102 ATTGAGAACCACCTGCATGT 57.408 45.000 0.00 0.00 0.00 3.21
33 34 2.159476 CGAATTGAGAACCACCTGCATG 60.159 50.000 0.00 0.00 0.00 4.06
36 37 1.523758 ACGAATTGAGAACCACCTGC 58.476 50.000 0.00 0.00 0.00 4.85
37 38 4.566004 TCTAACGAATTGAGAACCACCTG 58.434 43.478 0.00 0.00 0.00 4.00
39 40 5.237779 TGTTTCTAACGAATTGAGAACCACC 59.762 40.000 0.00 0.00 0.00 4.61
43 44 8.169268 CCAGTATGTTTCTAACGAATTGAGAAC 58.831 37.037 0.00 0.00 0.00 3.01
44 45 7.333423 CCCAGTATGTTTCTAACGAATTGAGAA 59.667 37.037 0.00 0.00 0.00 2.87
46 47 6.594159 ACCCAGTATGTTTCTAACGAATTGAG 59.406 38.462 0.00 0.00 0.00 3.02
47 48 6.469410 ACCCAGTATGTTTCTAACGAATTGA 58.531 36.000 0.00 0.00 0.00 2.57
51 52 5.856156 TGAACCCAGTATGTTTCTAACGAA 58.144 37.500 0.00 0.00 30.02 3.85
53 54 4.630069 CCTGAACCCAGTATGTTTCTAACG 59.370 45.833 0.00 0.00 38.74 3.18
54 55 5.557866 ACCTGAACCCAGTATGTTTCTAAC 58.442 41.667 0.00 0.00 38.74 2.34
56 57 7.504926 AATACCTGAACCCAGTATGTTTCTA 57.495 36.000 0.00 0.00 38.74 2.10
61 62 3.134081 CCGAATACCTGAACCCAGTATGT 59.866 47.826 0.00 0.00 38.74 2.29
63 64 2.704065 CCCGAATACCTGAACCCAGTAT 59.296 50.000 0.00 0.00 38.74 2.12
65 66 0.909623 CCCGAATACCTGAACCCAGT 59.090 55.000 0.00 0.00 38.74 4.00
66 67 0.180406 CCCCGAATACCTGAACCCAG 59.820 60.000 0.00 0.00 40.09 4.45
67 68 1.276140 CCCCCGAATACCTGAACCCA 61.276 60.000 0.00 0.00 0.00 4.51
69 70 0.622136 AACCCCCGAATACCTGAACC 59.378 55.000 0.00 0.00 0.00 3.62
72 73 0.324552 TCGAACCCCCGAATACCTGA 60.325 55.000 0.00 0.00 35.42 3.86
73 74 0.538118 TTCGAACCCCCGAATACCTG 59.462 55.000 0.00 0.00 42.74 4.00
74 75 1.065926 GTTTCGAACCCCCGAATACCT 60.066 52.381 0.00 0.00 46.21 3.08
76 77 1.001624 CGTTTCGAACCCCCGAATAC 58.998 55.000 0.00 0.00 46.21 1.89
79 80 2.665854 GCGTTTCGAACCCCCGAA 60.666 61.111 0.00 0.00 45.45 4.30
82 83 2.745100 GAGGCGTTTCGAACCCCC 60.745 66.667 0.00 0.00 29.31 5.40
83 84 2.745100 GGAGGCGTTTCGAACCCC 60.745 66.667 0.00 0.00 0.00 4.95
84 85 2.745100 GGGAGGCGTTTCGAACCC 60.745 66.667 0.00 0.00 0.00 4.11
85 86 1.740664 GAGGGAGGCGTTTCGAACC 60.741 63.158 0.00 0.00 0.00 3.62
86 87 2.092882 CGAGGGAGGCGTTTCGAAC 61.093 63.158 0.00 0.00 35.19 3.95
88 89 4.430765 GCGAGGGAGGCGTTTCGA 62.431 66.667 11.39 0.00 35.19 3.71
90 91 4.083862 AGGCGAGGGAGGCGTTTC 62.084 66.667 0.00 0.00 41.99 2.78
94 95 4.292178 GATCAGGCGAGGGAGGCG 62.292 72.222 0.00 0.00 41.99 5.52
95 96 4.292178 CGATCAGGCGAGGGAGGC 62.292 72.222 0.00 0.00 0.00 4.70
96 97 1.872197 GATCGATCAGGCGAGGGAGG 61.872 65.000 20.52 0.00 44.26 4.30
97 98 1.583986 GATCGATCAGGCGAGGGAG 59.416 63.158 20.52 0.00 44.26 4.30
99 100 2.256764 CGATCGATCAGGCGAGGG 59.743 66.667 24.40 2.41 44.26 4.30
101 102 1.441849 GAGCGATCGATCAGGCGAG 60.442 63.158 27.18 8.61 44.26 5.03
103 104 2.798675 CGAGCGATCGATCAGGCG 60.799 66.667 30.28 15.27 34.64 5.52
104 105 3.102668 GCGAGCGATCGATCAGGC 61.103 66.667 30.28 22.73 34.64 4.85
105 106 2.798675 CGCGAGCGATCGATCAGG 60.799 66.667 30.28 18.33 42.83 3.86
106 107 2.798675 CCGCGAGCGATCGATCAG 60.799 66.667 30.28 22.68 42.83 2.90
107 108 4.328231 CCCGCGAGCGATCGATCA 62.328 66.667 30.28 0.00 42.83 2.92
127 128 1.968540 GCTTCAGCTCCAAACGGCT 60.969 57.895 0.00 0.00 39.60 5.52
128 129 2.563427 GCTTCAGCTCCAAACGGC 59.437 61.111 0.00 0.00 38.21 5.68
129 130 1.600636 TGGCTTCAGCTCCAAACGG 60.601 57.895 0.00 0.00 41.70 4.44
130 131 1.576421 GTGGCTTCAGCTCCAAACG 59.424 57.895 0.00 0.00 41.70 3.60
131 132 1.856265 CGGTGGCTTCAGCTCCAAAC 61.856 60.000 0.00 0.00 41.70 2.93
132 133 1.600636 CGGTGGCTTCAGCTCCAAA 60.601 57.895 0.00 0.00 41.70 3.28
164 165 0.795085 CAACTTGAGAAGAGCCGCAG 59.205 55.000 0.00 0.00 0.00 5.18
165 166 1.230635 GCAACTTGAGAAGAGCCGCA 61.231 55.000 0.00 0.00 0.00 5.69
167 168 1.446907 ATGCAACTTGAGAAGAGCCG 58.553 50.000 0.00 0.00 34.07 5.52
168 169 5.118990 TGTATATGCAACTTGAGAAGAGCC 58.881 41.667 0.00 0.00 34.07 4.70
169 170 6.092670 TGTTGTATATGCAACTTGAGAAGAGC 59.907 38.462 29.13 6.78 46.33 4.09
170 171 7.459486 GTGTTGTATATGCAACTTGAGAAGAG 58.541 38.462 29.13 0.00 46.33 2.85
171 172 6.090763 CGTGTTGTATATGCAACTTGAGAAGA 59.909 38.462 29.13 10.51 46.33 2.87
172 173 6.243551 CGTGTTGTATATGCAACTTGAGAAG 58.756 40.000 29.13 13.00 46.33 2.85
177 178 3.425404 GGCGTGTTGTATATGCAACTTG 58.575 45.455 29.13 23.03 46.33 3.16
178 179 2.422127 GGGCGTGTTGTATATGCAACTT 59.578 45.455 29.13 0.00 46.33 2.66
181 182 1.065053 AGGGGCGTGTTGTATATGCAA 60.065 47.619 1.68 1.68 0.00 4.08
182 183 0.544223 AGGGGCGTGTTGTATATGCA 59.456 50.000 0.00 0.00 0.00 3.96
183 184 1.226746 GAGGGGCGTGTTGTATATGC 58.773 55.000 0.00 0.00 0.00 3.14
184 185 1.542547 GGGAGGGGCGTGTTGTATATG 60.543 57.143 0.00 0.00 0.00 1.78
185 186 0.763035 GGGAGGGGCGTGTTGTATAT 59.237 55.000 0.00 0.00 0.00 0.86
186 187 1.678598 CGGGAGGGGCGTGTTGTATA 61.679 60.000 0.00 0.00 0.00 1.47
187 188 2.995547 GGGAGGGGCGTGTTGTAT 59.004 61.111 0.00 0.00 0.00 2.29
212 213 2.602322 GCGGATCGAGGCTGATTGC 61.602 63.158 0.00 0.93 41.94 3.56
213 214 0.602106 ATGCGGATCGAGGCTGATTG 60.602 55.000 0.00 0.00 0.00 2.67
216 217 2.418777 CATGCGGATCGAGGCTGA 59.581 61.111 0.00 0.00 0.00 4.26
220 221 2.969238 GCACCATGCGGATCGAGG 60.969 66.667 0.00 0.00 31.71 4.63
247 248 4.479993 ATGGCGAGCCTGTCAGCC 62.480 66.667 15.75 0.00 42.11 4.85
248 249 2.894387 GATGGCGAGCCTGTCAGC 60.894 66.667 15.75 0.00 36.94 4.26
251 252 4.554036 GGGGATGGCGAGCCTGTC 62.554 72.222 15.75 12.57 36.94 3.51
253 254 3.426309 ATTGGGGATGGCGAGCCTG 62.426 63.158 15.75 0.00 36.94 4.85
255 256 2.908940 CATTGGGGATGGCGAGCC 60.909 66.667 7.26 7.26 31.83 4.70
257 258 0.181114 TCTTCATTGGGGATGGCGAG 59.819 55.000 0.00 0.00 36.37 5.03
259 260 1.027357 CTTCTTCATTGGGGATGGCG 58.973 55.000 0.00 0.00 36.37 5.69
261 262 3.434309 ACAACTTCTTCATTGGGGATGG 58.566 45.455 0.00 0.00 36.37 3.51
264 265 4.079253 GCTTACAACTTCTTCATTGGGGA 58.921 43.478 0.00 0.00 0.00 4.81
265 266 3.193479 GGCTTACAACTTCTTCATTGGGG 59.807 47.826 0.00 0.00 0.00 4.96
267 268 4.520492 AGTGGCTTACAACTTCTTCATTGG 59.480 41.667 0.00 0.00 0.00 3.16
272 273 4.997395 TGATCAGTGGCTTACAACTTCTTC 59.003 41.667 0.00 0.00 0.00 2.87
273 274 4.973168 TGATCAGTGGCTTACAACTTCTT 58.027 39.130 0.00 0.00 0.00 2.52
275 276 5.886960 ATTGATCAGTGGCTTACAACTTC 57.113 39.130 0.00 0.00 0.00 3.01
281 282 7.148086 TGGTTGAATTATTGATCAGTGGCTTAC 60.148 37.037 0.13 0.00 0.00 2.34
284 285 5.263599 TGGTTGAATTATTGATCAGTGGCT 58.736 37.500 0.13 0.00 0.00 4.75
287 288 6.153340 ACCCTTGGTTGAATTATTGATCAGTG 59.847 38.462 0.13 0.00 27.29 3.66
288 289 6.256053 ACCCTTGGTTGAATTATTGATCAGT 58.744 36.000 0.00 0.00 27.29 3.41
289 290 6.780457 ACCCTTGGTTGAATTATTGATCAG 57.220 37.500 0.00 0.00 27.29 2.90
290 291 7.147915 GCTTACCCTTGGTTGAATTATTGATCA 60.148 37.037 0.00 0.00 37.09 2.92
291 292 7.203218 GCTTACCCTTGGTTGAATTATTGATC 58.797 38.462 0.00 0.00 37.09 2.92
292 293 6.098266 GGCTTACCCTTGGTTGAATTATTGAT 59.902 38.462 0.00 0.00 37.09 2.57
293 294 5.420739 GGCTTACCCTTGGTTGAATTATTGA 59.579 40.000 0.00 0.00 37.09 2.57
294 295 5.422012 AGGCTTACCCTTGGTTGAATTATTG 59.578 40.000 0.00 0.00 43.06 1.90
297 298 4.668138 AGGCTTACCCTTGGTTGAATTA 57.332 40.909 0.00 0.00 43.06 1.40
298 299 3.542969 AGGCTTACCCTTGGTTGAATT 57.457 42.857 0.00 0.00 43.06 2.17
300 301 3.713826 CTAGGCTTACCCTTGGTTGAA 57.286 47.619 0.00 0.00 43.06 2.69
306 307 1.134371 GCAGACCTAGGCTTACCCTTG 60.134 57.143 9.30 0.00 43.06 3.61
309 310 0.178301 GTGCAGACCTAGGCTTACCC 59.822 60.000 9.30 0.00 36.11 3.69
311 312 2.762535 TTGTGCAGACCTAGGCTTAC 57.237 50.000 9.30 9.04 0.00 2.34
314 315 1.421646 ACTTTTGTGCAGACCTAGGCT 59.578 47.619 9.30 4.10 0.00 4.58
315 316 1.897560 ACTTTTGTGCAGACCTAGGC 58.102 50.000 9.30 1.39 0.00 3.93
316 317 3.476552 TCAACTTTTGTGCAGACCTAGG 58.523 45.455 7.41 7.41 0.00 3.02
351 352 7.186021 GCAGTAAGCACTTTCTACTTTGTAA 57.814 36.000 0.00 0.00 44.79 2.41
406 408 3.652869 CGGCCCATATATCCATTATCCCT 59.347 47.826 0.00 0.00 0.00 4.20
407 409 3.810743 GCGGCCCATATATCCATTATCCC 60.811 52.174 0.00 0.00 0.00 3.85
408 410 3.412386 GCGGCCCATATATCCATTATCC 58.588 50.000 0.00 0.00 0.00 2.59
409 411 3.067106 CGCGGCCCATATATCCATTATC 58.933 50.000 0.00 0.00 0.00 1.75
484 486 8.593492 ATCTTCATTAGAAAACAAACAAAGGC 57.407 30.769 0.00 0.00 36.22 4.35
514 516 5.368145 TCCGATCATGAATAGTTCTTTGGG 58.632 41.667 0.00 0.00 0.00 4.12
594 602 1.976045 GCACGTCGGCAATACTTTTTG 59.024 47.619 0.00 0.00 0.00 2.44
655 664 1.021390 GGTGCTCAGGTTCGGACATG 61.021 60.000 0.97 0.97 38.86 3.21
820 834 3.154710 CACTACACACCCTACAGTCAGA 58.845 50.000 0.00 0.00 0.00 3.27
857 5024 3.788333 ATCACATTTCGGGCATCTTTG 57.212 42.857 0.00 0.00 0.00 2.77
908 5075 4.037208 CACTCACAGCTGACAAGGAAAATT 59.963 41.667 23.35 0.00 0.00 1.82
961 5136 1.303888 TCCGACGCCTACCAGAACT 60.304 57.895 0.00 0.00 0.00 3.01
1000 5180 4.077822 GCTCCTCAGCAGCCATTTTATAT 58.922 43.478 0.00 0.00 46.06 0.86
1095 5319 1.804601 TGATGAGATGATGCGGATGC 58.195 50.000 0.00 0.00 43.20 3.91
1301 5533 2.145397 AGCTCTTGAGGTCGTATCCA 57.855 50.000 0.00 0.00 0.00 3.41
1396 5641 5.163550 GGCGGCAAGTAAAATTAAGAAGGAT 60.164 40.000 3.07 0.00 0.00 3.24
1397 5642 4.157105 GGCGGCAAGTAAAATTAAGAAGGA 59.843 41.667 3.07 0.00 0.00 3.36
1398 5643 4.421058 GGCGGCAAGTAAAATTAAGAAGG 58.579 43.478 3.07 0.00 0.00 3.46
1439 5684 0.321122 CGCTTGAAACTCTCCAGCCT 60.321 55.000 0.00 0.00 39.21 4.58
1440 5685 0.603975 ACGCTTGAAACTCTCCAGCC 60.604 55.000 0.00 0.00 39.21 4.85
1441 5686 0.793250 GACGCTTGAAACTCTCCAGC 59.207 55.000 0.00 0.00 39.05 4.85
1442 5687 1.063806 CGACGCTTGAAACTCTCCAG 58.936 55.000 0.00 0.00 0.00 3.86
1444 5689 1.061485 GACGACGCTTGAAACTCTCC 58.939 55.000 0.00 0.00 0.00 3.71
1445 5690 1.452399 GTGACGACGCTTGAAACTCTC 59.548 52.381 0.00 0.00 0.00 3.20
1446 5691 1.488527 GTGACGACGCTTGAAACTCT 58.511 50.000 0.00 0.00 0.00 3.24
1447 5692 0.507358 GGTGACGACGCTTGAAACTC 59.493 55.000 0.00 0.00 0.00 3.01
1448 5693 0.104304 AGGTGACGACGCTTGAAACT 59.896 50.000 0.00 0.00 0.00 2.66
1449 5694 0.935196 AAGGTGACGACGCTTGAAAC 59.065 50.000 0.00 0.00 0.00 2.78
1450 5695 1.202486 AGAAGGTGACGACGCTTGAAA 60.202 47.619 0.00 0.00 0.00 2.69
1452 5697 1.241165 TAGAAGGTGACGACGCTTGA 58.759 50.000 0.00 0.00 0.00 3.02
1454 5699 2.607187 CATTAGAAGGTGACGACGCTT 58.393 47.619 0.00 0.00 0.00 4.68
1455 5700 1.736032 GCATTAGAAGGTGACGACGCT 60.736 52.381 0.00 0.00 0.00 5.07
1457 5702 1.654105 GTGCATTAGAAGGTGACGACG 59.346 52.381 0.00 0.00 0.00 5.12
1458 5703 2.683968 TGTGCATTAGAAGGTGACGAC 58.316 47.619 0.00 0.00 0.00 4.34
1460 5705 3.498397 ACTTTGTGCATTAGAAGGTGACG 59.502 43.478 0.00 0.00 0.00 4.35
1461 5706 5.438761 AACTTTGTGCATTAGAAGGTGAC 57.561 39.130 0.00 0.00 0.00 3.67
1462 5707 5.592282 TCAAACTTTGTGCATTAGAAGGTGA 59.408 36.000 0.00 0.00 0.00 4.02
1464 5709 6.096846 ACTTCAAACTTTGTGCATTAGAAGGT 59.903 34.615 0.00 0.00 35.51 3.50
1466 5711 6.974622 ACACTTCAAACTTTGTGCATTAGAAG 59.025 34.615 0.00 0.00 36.82 2.85
1467 5712 6.862209 ACACTTCAAACTTTGTGCATTAGAA 58.138 32.000 0.00 0.00 34.14 2.10
1468 5713 6.449635 ACACTTCAAACTTTGTGCATTAGA 57.550 33.333 0.00 0.00 34.14 2.10
1469 5714 7.417612 AGTACACTTCAAACTTTGTGCATTAG 58.582 34.615 0.00 0.00 34.14 1.73
1470 5715 7.328277 AGTACACTTCAAACTTTGTGCATTA 57.672 32.000 0.00 0.00 34.14 1.90
1471 5716 6.207691 AGTACACTTCAAACTTTGTGCATT 57.792 33.333 0.00 0.00 34.14 3.56
1496 5741 7.752239 GTGCACGAACAGTAAAGACTAATACTA 59.248 37.037 0.00 0.00 33.32 1.82
1500 5745 5.294356 TGTGCACGAACAGTAAAGACTAAT 58.706 37.500 13.13 0.00 33.32 1.73
1503 5748 3.173668 TGTGCACGAACAGTAAAGACT 57.826 42.857 13.13 0.00 35.80 3.24
1505 5750 3.527533 ACTTGTGCACGAACAGTAAAGA 58.472 40.909 13.13 0.00 0.00 2.52
1506 5751 3.944422 ACTTGTGCACGAACAGTAAAG 57.056 42.857 13.13 9.83 0.00 1.85
1507 5752 4.009798 CAACTTGTGCACGAACAGTAAA 57.990 40.909 13.13 0.00 0.00 2.01
1508 5753 3.666883 CAACTTGTGCACGAACAGTAA 57.333 42.857 13.13 0.00 0.00 2.24
1520 5765 5.640732 ACTTTCAACACTAAGCAACTTGTG 58.359 37.500 0.00 0.00 32.79 3.33
1521 5766 5.648092 AGACTTTCAACACTAAGCAACTTGT 59.352 36.000 0.00 0.00 0.00 3.16
1522 5767 5.967674 CAGACTTTCAACACTAAGCAACTTG 59.032 40.000 0.00 0.00 0.00 3.16
1525 5770 5.734855 TCAGACTTTCAACACTAAGCAAC 57.265 39.130 0.00 0.00 0.00 4.17
1531 5776 6.880484 TGGTAGTTTCAGACTTTCAACACTA 58.120 36.000 0.00 0.00 39.86 2.74
1532 5777 5.741011 TGGTAGTTTCAGACTTTCAACACT 58.259 37.500 0.00 0.00 39.86 3.55
1533 5778 6.431198 TTGGTAGTTTCAGACTTTCAACAC 57.569 37.500 0.00 0.00 39.86 3.32
1534 5779 6.826231 TCATTGGTAGTTTCAGACTTTCAACA 59.174 34.615 0.00 0.00 39.86 3.33
1535 5780 7.259290 TCATTGGTAGTTTCAGACTTTCAAC 57.741 36.000 0.00 0.00 39.86 3.18
1540 5785 8.641498 ATCATTTCATTGGTAGTTTCAGACTT 57.359 30.769 0.00 0.00 39.86 3.01
1541 5786 9.739276 TTATCATTTCATTGGTAGTTTCAGACT 57.261 29.630 0.00 0.00 42.55 3.24
1549 5794 8.274322 TGGAGACATTATCATTTCATTGGTAGT 58.726 33.333 0.00 0.00 33.40 2.73
1550 5795 8.562892 GTGGAGACATTATCATTTCATTGGTAG 58.437 37.037 0.00 0.00 46.14 3.18
1551 5796 7.226523 CGTGGAGACATTATCATTTCATTGGTA 59.773 37.037 0.00 0.00 46.14 3.25
1552 5797 6.038603 CGTGGAGACATTATCATTTCATTGGT 59.961 38.462 0.00 0.00 46.14 3.67
1554 5799 6.908820 CACGTGGAGACATTATCATTTCATTG 59.091 38.462 7.95 0.00 46.14 2.82
1555 5800 6.458751 GCACGTGGAGACATTATCATTTCATT 60.459 38.462 18.88 0.00 46.14 2.57
1558 5803 4.572389 AGCACGTGGAGACATTATCATTTC 59.428 41.667 18.88 0.00 46.14 2.17
1559 5804 4.517285 AGCACGTGGAGACATTATCATTT 58.483 39.130 18.88 0.00 46.14 2.32
1560 5805 4.142609 AGCACGTGGAGACATTATCATT 57.857 40.909 18.88 0.00 46.14 2.57
1562 5807 3.521560 GAAGCACGTGGAGACATTATCA 58.478 45.455 18.88 0.00 46.14 2.15
1563 5808 2.866762 GGAAGCACGTGGAGACATTATC 59.133 50.000 18.88 0.00 46.14 1.75
1564 5809 2.501723 AGGAAGCACGTGGAGACATTAT 59.498 45.455 18.88 0.00 46.14 1.28
1565 5810 1.899814 AGGAAGCACGTGGAGACATTA 59.100 47.619 18.88 0.00 46.14 1.90
1567 5812 0.687354 AAGGAAGCACGTGGAGACAT 59.313 50.000 18.88 0.00 46.14 3.06
1568 5813 0.033504 GAAGGAAGCACGTGGAGACA 59.966 55.000 18.88 0.00 38.70 3.41
1569 5814 0.318762 AGAAGGAAGCACGTGGAGAC 59.681 55.000 18.88 0.00 0.00 3.36
1571 5816 1.884235 AAAGAAGGAAGCACGTGGAG 58.116 50.000 18.88 0.00 0.00 3.86
1573 5818 3.502211 ACAATAAAGAAGGAAGCACGTGG 59.498 43.478 18.88 0.00 0.00 4.94
1576 5821 4.142816 CCAGACAATAAAGAAGGAAGCACG 60.143 45.833 0.00 0.00 0.00 5.34
1577 5822 5.003804 TCCAGACAATAAAGAAGGAAGCAC 58.996 41.667 0.00 0.00 0.00 4.40
1578 5823 5.241403 TCCAGACAATAAAGAAGGAAGCA 57.759 39.130 0.00 0.00 0.00 3.91
1579 5824 6.188400 CTTCCAGACAATAAAGAAGGAAGC 57.812 41.667 0.00 0.00 42.65 3.86
1581 5826 5.010282 GGCTTCCAGACAATAAAGAAGGAA 58.990 41.667 0.00 0.00 35.56 3.36
1582 5827 4.589908 GGCTTCCAGACAATAAAGAAGGA 58.410 43.478 0.00 0.00 35.56 3.36
1583 5828 3.375299 CGGCTTCCAGACAATAAAGAAGG 59.625 47.826 0.00 0.00 35.56 3.46
1584 5829 4.003648 ACGGCTTCCAGACAATAAAGAAG 58.996 43.478 0.00 0.00 37.57 2.85
1586 5831 3.695830 ACGGCTTCCAGACAATAAAGA 57.304 42.857 0.00 0.00 0.00 2.52
1590 5835 4.250464 CAAGTAACGGCTTCCAGACAATA 58.750 43.478 0.00 0.00 0.00 1.90
1591 5836 3.074412 CAAGTAACGGCTTCCAGACAAT 58.926 45.455 0.00 0.00 0.00 2.71
1593 5838 1.876416 GCAAGTAACGGCTTCCAGACA 60.876 52.381 0.00 0.00 0.00 3.41
1594 5839 0.796927 GCAAGTAACGGCTTCCAGAC 59.203 55.000 0.00 0.00 0.00 3.51
1596 5841 0.605319 TGGCAAGTAACGGCTTCCAG 60.605 55.000 0.00 0.00 0.00 3.86
1597 5842 0.887387 GTGGCAAGTAACGGCTTCCA 60.887 55.000 0.00 0.00 0.00 3.53
1598 5843 1.873863 GTGGCAAGTAACGGCTTCC 59.126 57.895 0.00 0.00 0.00 3.46
1599 5844 0.947180 TCGTGGCAAGTAACGGCTTC 60.947 55.000 0.00 0.00 40.18 3.86
1600 5845 0.321298 ATCGTGGCAAGTAACGGCTT 60.321 50.000 0.00 0.00 40.18 4.35
1601 5846 1.019278 CATCGTGGCAAGTAACGGCT 61.019 55.000 0.00 0.00 40.18 5.52
1602 5847 1.423845 CATCGTGGCAAGTAACGGC 59.576 57.895 0.00 0.00 40.18 5.68
1603 5848 0.390603 TCCATCGTGGCAAGTAACGG 60.391 55.000 0.00 0.00 40.18 4.44
1604 5849 1.434555 TTCCATCGTGGCAAGTAACG 58.565 50.000 0.00 0.00 37.47 3.18
1605 5850 2.747446 ACATTCCATCGTGGCAAGTAAC 59.253 45.455 0.00 0.00 37.47 2.50
1606 5851 2.746904 CACATTCCATCGTGGCAAGTAA 59.253 45.455 0.00 0.00 37.47 2.24
1607 5852 2.027653 TCACATTCCATCGTGGCAAGTA 60.028 45.455 0.00 0.00 37.47 2.24
1608 5853 1.167851 CACATTCCATCGTGGCAAGT 58.832 50.000 0.00 0.00 37.47 3.16
1609 5854 1.452110 TCACATTCCATCGTGGCAAG 58.548 50.000 0.00 0.00 37.47 4.01
1610 5855 2.127271 ATCACATTCCATCGTGGCAA 57.873 45.000 0.00 0.00 37.47 4.52
1611 5856 2.127271 AATCACATTCCATCGTGGCA 57.873 45.000 0.00 0.00 37.47 4.92
1612 5857 4.630894 TTAAATCACATTCCATCGTGGC 57.369 40.909 0.00 0.00 37.47 5.01
1613 5858 6.194796 AGTTTAAATCACATTCCATCGTGG 57.805 37.500 0.00 0.00 39.43 4.94
1614 5859 9.787532 AAATAGTTTAAATCACATTCCATCGTG 57.212 29.630 0.00 0.00 34.34 4.35
1629 5874 9.291664 GCACGGCATAAACATAAATAGTTTAAA 57.708 29.630 0.00 0.00 42.63 1.52
1630 5875 7.640630 CGCACGGCATAAACATAAATAGTTTAA 59.359 33.333 0.00 0.00 42.63 1.52
1631 5876 7.127042 CGCACGGCATAAACATAAATAGTTTA 58.873 34.615 0.00 0.00 43.27 2.01
1634 5879 4.573201 ACGCACGGCATAAACATAAATAGT 59.427 37.500 0.00 0.00 0.00 2.12
1635 5880 4.903585 CACGCACGGCATAAACATAAATAG 59.096 41.667 0.00 0.00 0.00 1.73
1636 5881 4.786927 GCACGCACGGCATAAACATAAATA 60.787 41.667 0.00 0.00 0.00 1.40
1642 5887 0.670854 TAGCACGCACGGCATAAACA 60.671 50.000 6.35 0.00 0.00 2.83
1643 5888 0.026285 CTAGCACGCACGGCATAAAC 59.974 55.000 6.35 0.00 0.00 2.01
1644 5889 0.108567 TCTAGCACGCACGGCATAAA 60.109 50.000 6.35 0.00 0.00 1.40
1645 5890 0.108567 TTCTAGCACGCACGGCATAA 60.109 50.000 6.35 0.00 0.00 1.90
1646 5891 0.104120 ATTCTAGCACGCACGGCATA 59.896 50.000 6.35 0.00 0.00 3.14
1647 5892 0.104120 TATTCTAGCACGCACGGCAT 59.896 50.000 6.35 0.00 0.00 4.40
1648 5893 0.804544 GTATTCTAGCACGCACGGCA 60.805 55.000 6.35 0.00 0.00 5.69
1650 5895 0.921347 GTGTATTCTAGCACGCACGG 59.079 55.000 0.00 0.00 0.00 4.94
1651 5896 1.846782 GAGTGTATTCTAGCACGCACG 59.153 52.381 0.00 0.00 40.26 5.34
1652 5897 3.109619 GAGAGTGTATTCTAGCACGCAC 58.890 50.000 5.15 3.06 40.26 5.34
1653 5898 2.223272 CGAGAGTGTATTCTAGCACGCA 60.223 50.000 5.15 0.00 40.26 5.24
1655 5900 2.223272 TGCGAGAGTGTATTCTAGCACG 60.223 50.000 7.82 0.00 46.34 5.34
1656 5901 3.422417 TGCGAGAGTGTATTCTAGCAC 57.578 47.619 7.82 0.00 46.34 4.40
1658 5903 2.733517 GGTGCGAGAGTGTATTCTAGC 58.266 52.381 3.24 3.24 43.48 3.42
1659 5904 2.287069 CCGGTGCGAGAGTGTATTCTAG 60.287 54.545 0.00 0.00 0.00 2.43
1660 5905 1.674441 CCGGTGCGAGAGTGTATTCTA 59.326 52.381 0.00 0.00 0.00 2.10
1661 5906 0.456221 CCGGTGCGAGAGTGTATTCT 59.544 55.000 0.00 0.00 0.00 2.40
1664 5909 2.423898 CCCCGGTGCGAGAGTGTAT 61.424 63.158 0.00 0.00 0.00 2.29
1677 5922 4.821589 GAGCGAGTGAAGCCCCGG 62.822 72.222 0.00 0.00 34.64 5.73
1678 5923 3.708220 GAGAGCGAGTGAAGCCCCG 62.708 68.421 0.00 0.00 34.64 5.73
1679 5924 1.965754 ATGAGAGCGAGTGAAGCCCC 61.966 60.000 0.00 0.00 34.64 5.80
1680 5925 0.809241 CATGAGAGCGAGTGAAGCCC 60.809 60.000 0.00 0.00 34.64 5.19
1681 5926 0.108424 ACATGAGAGCGAGTGAAGCC 60.108 55.000 0.00 0.00 34.64 4.35
1682 5927 1.719600 AACATGAGAGCGAGTGAAGC 58.280 50.000 0.00 0.00 0.00 3.86
1683 5928 3.320626 TCAAACATGAGAGCGAGTGAAG 58.679 45.455 0.00 0.00 0.00 3.02
1684 5929 3.385193 TCAAACATGAGAGCGAGTGAA 57.615 42.857 0.00 0.00 0.00 3.18
1686 5931 4.210746 CCATATCAAACATGAGAGCGAGTG 59.789 45.833 0.00 0.00 0.00 3.51
1687 5932 4.375272 CCATATCAAACATGAGAGCGAGT 58.625 43.478 0.00 0.00 0.00 4.18
1688 5933 3.744942 CCCATATCAAACATGAGAGCGAG 59.255 47.826 0.00 0.00 0.00 5.03
1689 5934 3.134623 ACCCATATCAAACATGAGAGCGA 59.865 43.478 0.00 0.00 0.00 4.93
1690 5935 3.249320 CACCCATATCAAACATGAGAGCG 59.751 47.826 0.00 0.00 0.00 5.03
1691 5936 3.004106 GCACCCATATCAAACATGAGAGC 59.996 47.826 0.00 0.00 0.00 4.09
1692 5937 4.201657 TGCACCCATATCAAACATGAGAG 58.798 43.478 0.00 0.00 0.00 3.20
1693 5938 4.233632 TGCACCCATATCAAACATGAGA 57.766 40.909 0.00 0.00 0.00 3.27
1694 5939 5.766670 AGTATGCACCCATATCAAACATGAG 59.233 40.000 0.00 0.00 36.40 2.90
1695 5940 5.532032 CAGTATGCACCCATATCAAACATGA 59.468 40.000 0.00 0.00 36.40 3.07
1696 5941 5.278610 CCAGTATGCACCCATATCAAACATG 60.279 44.000 0.00 0.00 36.40 3.21
1697 5942 4.828939 CCAGTATGCACCCATATCAAACAT 59.171 41.667 0.00 0.00 36.40 2.71
1698 5943 4.206375 CCAGTATGCACCCATATCAAACA 58.794 43.478 0.00 0.00 36.40 2.83
1699 5944 3.569701 CCCAGTATGCACCCATATCAAAC 59.430 47.826 0.00 0.00 36.40 2.93
1700 5945 3.461458 TCCCAGTATGCACCCATATCAAA 59.539 43.478 0.00 0.00 36.40 2.69
1701 5946 3.052329 TCCCAGTATGCACCCATATCAA 58.948 45.455 0.00 0.00 36.40 2.57
1702 5947 2.639347 CTCCCAGTATGCACCCATATCA 59.361 50.000 0.00 0.00 36.40 2.15
1703 5948 2.639839 ACTCCCAGTATGCACCCATATC 59.360 50.000 0.00 0.00 36.40 1.63
1704 5949 2.373169 CACTCCCAGTATGCACCCATAT 59.627 50.000 0.00 0.00 36.40 1.78
1705 5950 1.768275 CACTCCCAGTATGCACCCATA 59.232 52.381 0.00 0.00 32.85 2.74
1706 5951 0.548031 CACTCCCAGTATGCACCCAT 59.452 55.000 0.00 0.00 35.44 4.00
1708 5953 1.224592 CCACTCCCAGTATGCACCC 59.775 63.158 0.00 0.00 31.97 4.61
1709 5954 1.224592 CCCACTCCCAGTATGCACC 59.775 63.158 0.00 0.00 31.97 5.01
1710 5955 0.179000 CTCCCACTCCCAGTATGCAC 59.821 60.000 0.00 0.00 31.97 4.57
1711 5956 0.252696 ACTCCCACTCCCAGTATGCA 60.253 55.000 0.00 0.00 31.97 3.96
1712 5957 0.179000 CACTCCCACTCCCAGTATGC 59.821 60.000 0.00 0.00 31.97 3.14
1713 5958 1.759445 CTCACTCCCACTCCCAGTATG 59.241 57.143 0.00 0.00 0.00 2.39
1714 5959 1.362932 ACTCACTCCCACTCCCAGTAT 59.637 52.381 0.00 0.00 0.00 2.12
1716 5961 0.833834 CACTCACTCCCACTCCCAGT 60.834 60.000 0.00 0.00 0.00 4.00
1717 5962 0.542938 TCACTCACTCCCACTCCCAG 60.543 60.000 0.00 0.00 0.00 4.45
1719 5964 1.280457 ATTCACTCACTCCCACTCCC 58.720 55.000 0.00 0.00 0.00 4.30
1720 5965 3.425162 AAATTCACTCACTCCCACTCC 57.575 47.619 0.00 0.00 0.00 3.85
1722 5967 3.071023 TCGAAAATTCACTCACTCCCACT 59.929 43.478 0.00 0.00 0.00 4.00
1723 5968 3.399330 TCGAAAATTCACTCACTCCCAC 58.601 45.455 0.00 0.00 0.00 4.61
1726 5971 4.690748 TGACATCGAAAATTCACTCACTCC 59.309 41.667 0.00 0.00 0.00 3.85
1727 5972 5.845985 TGACATCGAAAATTCACTCACTC 57.154 39.130 0.00 0.00 0.00 3.51
1728 5973 6.808008 ATTGACATCGAAAATTCACTCACT 57.192 33.333 0.00 0.00 0.00 3.41
1731 5976 8.506140 TGAAAATTGACATCGAAAATTCACTC 57.494 30.769 0.00 0.00 0.00 3.51
1733 5978 7.594758 TCCTGAAAATTGACATCGAAAATTCAC 59.405 33.333 0.00 0.00 0.00 3.18
1734 5979 7.656412 TCCTGAAAATTGACATCGAAAATTCA 58.344 30.769 0.00 0.00 0.00 2.57
1735 5980 7.274250 CCTCCTGAAAATTGACATCGAAAATTC 59.726 37.037 0.00 0.00 0.00 2.17
1736 5981 7.092716 CCTCCTGAAAATTGACATCGAAAATT 58.907 34.615 0.00 0.00 0.00 1.82
1737 5982 6.624423 CCTCCTGAAAATTGACATCGAAAAT 58.376 36.000 0.00 0.00 0.00 1.82
1738 5983 5.564651 GCCTCCTGAAAATTGACATCGAAAA 60.565 40.000 0.00 0.00 0.00 2.29
1739 5984 4.082787 GCCTCCTGAAAATTGACATCGAAA 60.083 41.667 0.00 0.00 0.00 3.46
1740 5985 3.440173 GCCTCCTGAAAATTGACATCGAA 59.560 43.478 0.00 0.00 0.00 3.71
1742 5987 2.749076 TGCCTCCTGAAAATTGACATCG 59.251 45.455 0.00 0.00 0.00 3.84
1743 5988 4.400251 TCATGCCTCCTGAAAATTGACATC 59.600 41.667 0.00 0.00 0.00 3.06
1745 5990 3.765381 TCATGCCTCCTGAAAATTGACA 58.235 40.909 0.00 0.00 0.00 3.58
1746 5991 4.996788 ATCATGCCTCCTGAAAATTGAC 57.003 40.909 0.00 0.00 0.00 3.18
1985 6230 9.797642 TCACATGGAATACATTATAATGCTTCT 57.202 29.630 25.42 13.12 40.04 2.85
1994 6239 9.778741 ACGTTCTAATCACATGGAATACATTAT 57.221 29.630 0.00 0.00 37.84 1.28
1995 6240 9.607988 AACGTTCTAATCACATGGAATACATTA 57.392 29.630 0.00 0.00 37.84 1.90
1996 6241 8.506168 AACGTTCTAATCACATGGAATACATT 57.494 30.769 0.00 0.00 37.84 2.71
1997 6242 7.768582 TGAACGTTCTAATCACATGGAATACAT 59.231 33.333 27.32 0.00 41.57 2.29
1999 6244 7.254455 CCTGAACGTTCTAATCACATGGAATAC 60.254 40.741 27.32 0.00 0.00 1.89
2000 6245 6.761242 CCTGAACGTTCTAATCACATGGAATA 59.239 38.462 27.32 2.05 0.00 1.75
2001 6246 5.586243 CCTGAACGTTCTAATCACATGGAAT 59.414 40.000 27.32 0.00 0.00 3.01
2007 6252 2.614481 GGGCCTGAACGTTCTAATCACA 60.614 50.000 27.32 6.63 0.00 3.58
2013 6258 1.601419 CGAGGGGCCTGAACGTTCTA 61.601 60.000 27.32 13.77 0.00 2.10
2018 9745 2.033194 GTTTCGAGGGGCCTGAACG 61.033 63.158 0.84 4.21 0.00 3.95
2118 11102 5.220854 GGCGAGCATAACTTTGATGTTGTAT 60.221 40.000 0.00 0.00 0.00 2.29
2125 11109 3.266510 TGAGGCGAGCATAACTTTGAT 57.733 42.857 0.00 0.00 0.00 2.57
2198 11183 8.712363 TGTCAGACTTTCTTTCGAAGAATAATG 58.288 33.333 1.31 3.11 46.15 1.90
2243 11231 3.756082 ATGCCCCTCTTAACCATCAAA 57.244 42.857 0.00 0.00 0.00 2.69
2265 11253 6.477688 CCAAATCAAGATGCCAATTACATGTC 59.522 38.462 0.00 0.00 0.00 3.06
2278 11266 4.022589 ACTGAGCAACACCAAATCAAGATG 60.023 41.667 0.00 0.00 0.00 2.90
2306 11294 2.029828 TGGCTGTTGTTTCAAACGTTGT 60.030 40.909 0.00 0.00 32.47 3.32
2313 11305 3.382865 TGTGCTAATGGCTGTTGTTTCAA 59.617 39.130 0.00 0.00 42.39 2.69
2324 11316 7.441157 TGAAGTATAGTTGTATGTGCTAATGGC 59.559 37.037 0.00 0.00 42.22 4.40
2442 11434 7.330208 AGTTATGTGTGTAGTTTTAGTTAGGCG 59.670 37.037 0.00 0.00 0.00 5.52
2497 11494 0.179020 TGGTGAGTCAGTGCTTTGGG 60.179 55.000 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.