Multiple sequence alignment - TraesCS1B01G396200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G396200 chr1B 100.000 3494 0 0 1 3494 627948873 627945380 0.000000e+00 6453
1 TraesCS1B01G396200 chr1D 88.505 1070 63 24 1236 2268 457880568 457879522 0.000000e+00 1240
2 TraesCS1B01G396200 chr1D 92.095 797 41 15 2276 3060 457879319 457878533 0.000000e+00 1103
3 TraesCS1B01G396200 chr1D 90.070 574 36 11 503 1070 457881429 457880871 0.000000e+00 725
4 TraesCS1B01G396200 chr1D 93.917 411 22 2 3087 3494 457878537 457878127 4.950000e-173 617
5 TraesCS1B01G396200 chr6A 87.864 997 84 22 1282 2271 365555581 365554615 0.000000e+00 1136
6 TraesCS1B01G396200 chr6A 87.663 997 86 21 1282 2271 365562772 365561806 0.000000e+00 1125
7 TraesCS1B01G396200 chr6A 93.269 312 15 2 2275 2580 365561605 365561294 4.110000e-124 455
8 TraesCS1B01G396200 chr6A 91.987 312 19 2 2275 2580 365554414 365554103 1.930000e-117 433
9 TraesCS1B01G396200 chr6A 91.331 323 18 7 861 1182 365555958 365555645 1.930000e-117 433
10 TraesCS1B01G396200 chr6A 91.054 313 18 6 871 1182 365563139 365562836 6.980000e-112 414
11 TraesCS1B01G396200 chr1A 88.865 934 80 16 1344 2270 550344275 550343359 0.000000e+00 1127
12 TraesCS1B01G396200 chr1A 93.148 467 20 3 3039 3494 550341590 550341125 0.000000e+00 675
13 TraesCS1B01G396200 chr1A 83.498 709 45 29 502 1182 550345316 550344652 2.320000e-166 595
14 TraesCS1B01G396200 chr1A 88.076 369 19 14 2270 2634 550343187 550342840 6.980000e-112 414
15 TraesCS1B01G396200 chr1A 84.143 391 20 15 2653 3034 550342062 550341705 1.200000e-89 340
16 TraesCS1B01G396200 chr1A 90.556 180 12 4 1182 1360 550344477 550344302 2.100000e-57 233
17 TraesCS1B01G396200 chr2A 87.475 998 92 21 1279 2271 667584438 667585407 0.000000e+00 1120
18 TraesCS1B01G396200 chr2A 93.910 312 13 2 2275 2580 667585608 667585919 1.900000e-127 466
19 TraesCS1B01G396200 chr2A 91.950 323 15 7 861 1182 667584065 667584377 3.200000e-120 442
20 TraesCS1B01G396200 chr4A 85.958 997 103 21 1282 2271 299911782 299910816 0.000000e+00 1031
21 TraesCS1B01G396200 chr4A 91.022 323 19 6 861 1182 299912159 299911846 8.960000e-116 427
22 TraesCS1B01G396200 chr4A 91.613 310 22 1 2275 2580 299910615 299910306 3.220000e-115 425
23 TraesCS1B01G396200 chr2B 89.683 126 8 1 1182 1302 425812232 425812357 4.670000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G396200 chr1B 627945380 627948873 3493 True 6453.000000 6453 100.000000 1 3494 1 chr1B.!!$R1 3493
1 TraesCS1B01G396200 chr1D 457878127 457881429 3302 True 921.250000 1240 91.146750 503 3494 4 chr1D.!!$R1 2991
2 TraesCS1B01G396200 chr6A 365554103 365555958 1855 True 667.333333 1136 90.394000 861 2580 3 chr6A.!!$R1 1719
3 TraesCS1B01G396200 chr6A 365561294 365563139 1845 True 664.666667 1125 90.662000 871 2580 3 chr6A.!!$R2 1709
4 TraesCS1B01G396200 chr1A 550341125 550345316 4191 True 564.000000 1127 88.047667 502 3494 6 chr1A.!!$R1 2992
5 TraesCS1B01G396200 chr2A 667584065 667585919 1854 False 676.000000 1120 91.111667 861 2580 3 chr2A.!!$F1 1719
6 TraesCS1B01G396200 chr4A 299910306 299912159 1853 True 627.666667 1031 89.531000 861 2580 3 chr4A.!!$R1 1719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 0.028505 TACGACGAGCACGGAATAGC 59.971 55.0 8.74 0.0 44.46 2.97 F
727 731 0.040067 GCGCAGACAAAAACCAGAGG 60.040 55.0 0.30 0.0 0.00 3.69 F
1718 2016 0.093026 CGCTTCTCTTTAACCGTGCG 59.907 55.0 0.00 0.0 36.41 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2418 0.032615 TGGTTGACAAAACAGGCCCT 60.033 50.000 0.0 0.0 0.00 5.19 R
2102 2419 0.827368 TTGGTTGACAAAACAGGCCC 59.173 50.000 0.0 0.0 33.58 5.80 R
3129 4547 1.144913 CCTGGTTTTTCCCTCCTGACA 59.855 52.381 0.0 0.0 34.77 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.160642 CATTGTTGATGAGGGAGATGGA 57.839 45.455 0.00 0.00 38.03 3.41
22 23 3.920231 TTGTTGATGAGGGAGATGGAG 57.080 47.619 0.00 0.00 0.00 3.86
23 24 2.837947 TGTTGATGAGGGAGATGGAGT 58.162 47.619 0.00 0.00 0.00 3.85
24 25 3.184628 TGTTGATGAGGGAGATGGAGTT 58.815 45.455 0.00 0.00 0.00 3.01
25 26 3.054875 TGTTGATGAGGGAGATGGAGTTG 60.055 47.826 0.00 0.00 0.00 3.16
26 27 2.121948 TGATGAGGGAGATGGAGTTGG 58.878 52.381 0.00 0.00 0.00 3.77
27 28 0.842635 ATGAGGGAGATGGAGTTGGC 59.157 55.000 0.00 0.00 0.00 4.52
28 29 0.547471 TGAGGGAGATGGAGTTGGCA 60.547 55.000 0.00 0.00 0.00 4.92
29 30 0.620556 GAGGGAGATGGAGTTGGCAA 59.379 55.000 0.00 0.00 0.00 4.52
30 31 1.213926 GAGGGAGATGGAGTTGGCAAT 59.786 52.381 1.92 0.00 0.00 3.56
31 32 1.064166 AGGGAGATGGAGTTGGCAATG 60.064 52.381 1.92 0.00 0.00 2.82
32 33 1.064463 GGGAGATGGAGTTGGCAATGA 60.064 52.381 1.92 0.00 0.00 2.57
33 34 2.019984 GGAGATGGAGTTGGCAATGAC 58.980 52.381 1.92 0.00 0.00 3.06
34 35 1.667724 GAGATGGAGTTGGCAATGACG 59.332 52.381 1.92 0.00 0.00 4.35
35 36 0.734889 GATGGAGTTGGCAATGACGG 59.265 55.000 1.92 0.00 0.00 4.79
36 37 0.327924 ATGGAGTTGGCAATGACGGA 59.672 50.000 1.92 0.00 0.00 4.69
37 38 0.605319 TGGAGTTGGCAATGACGGAC 60.605 55.000 1.92 0.00 0.00 4.79
38 39 1.635663 GGAGTTGGCAATGACGGACG 61.636 60.000 1.92 0.00 0.00 4.79
39 40 1.635663 GAGTTGGCAATGACGGACGG 61.636 60.000 1.92 0.00 0.00 4.79
40 41 1.964373 GTTGGCAATGACGGACGGT 60.964 57.895 1.92 0.00 0.00 4.83
41 42 1.228003 TTGGCAATGACGGACGGTT 60.228 52.632 0.00 0.00 0.00 4.44
42 43 1.511318 TTGGCAATGACGGACGGTTG 61.511 55.000 0.00 0.08 0.00 3.77
43 44 1.669760 GGCAATGACGGACGGTTGA 60.670 57.895 9.70 0.00 0.00 3.18
44 45 1.495951 GCAATGACGGACGGTTGAC 59.504 57.895 9.70 0.94 0.00 3.18
54 55 2.769617 CGGTTGACGCGTGATGTC 59.230 61.111 20.70 1.01 36.88 3.06
55 56 2.019408 CGGTTGACGCGTGATGTCA 61.019 57.895 20.70 4.57 44.17 3.58
58 59 3.945436 TGACGCGTGATGTCAACC 58.055 55.556 20.70 0.00 42.99 3.77
59 60 1.365999 TGACGCGTGATGTCAACCT 59.634 52.632 20.70 0.00 42.99 3.50
60 61 0.666274 TGACGCGTGATGTCAACCTC 60.666 55.000 20.70 0.00 42.99 3.85
61 62 1.352156 GACGCGTGATGTCAACCTCC 61.352 60.000 20.70 0.00 36.37 4.30
62 63 1.079819 CGCGTGATGTCAACCTCCT 60.080 57.895 0.00 0.00 0.00 3.69
63 64 1.078759 CGCGTGATGTCAACCTCCTC 61.079 60.000 0.00 0.00 0.00 3.71
64 65 0.037326 GCGTGATGTCAACCTCCTCA 60.037 55.000 0.00 0.00 0.00 3.86
65 66 1.406069 GCGTGATGTCAACCTCCTCAT 60.406 52.381 0.00 0.00 0.00 2.90
66 67 2.544685 CGTGATGTCAACCTCCTCATC 58.455 52.381 0.00 0.00 37.68 2.92
67 68 2.094026 CGTGATGTCAACCTCCTCATCA 60.094 50.000 0.00 0.00 42.48 3.07
68 69 3.617288 CGTGATGTCAACCTCCTCATCAA 60.617 47.826 8.00 0.00 44.90 2.57
69 70 3.937706 GTGATGTCAACCTCCTCATCAAG 59.062 47.826 8.00 0.00 44.90 3.02
70 71 3.584406 TGATGTCAACCTCCTCATCAAGT 59.416 43.478 0.00 0.00 42.01 3.16
71 72 3.685139 TGTCAACCTCCTCATCAAGTC 57.315 47.619 0.00 0.00 0.00 3.01
72 73 2.029020 TGTCAACCTCCTCATCAAGTCG 60.029 50.000 0.00 0.00 0.00 4.18
73 74 2.028930 GTCAACCTCCTCATCAAGTCGT 60.029 50.000 0.00 0.00 0.00 4.34
74 75 2.029020 TCAACCTCCTCATCAAGTCGTG 60.029 50.000 0.00 0.00 0.00 4.35
75 76 0.898320 ACCTCCTCATCAAGTCGTGG 59.102 55.000 0.00 0.00 0.00 4.94
76 77 1.186200 CCTCCTCATCAAGTCGTGGA 58.814 55.000 0.00 0.00 0.00 4.02
77 78 1.550524 CCTCCTCATCAAGTCGTGGAA 59.449 52.381 0.00 0.00 0.00 3.53
78 79 2.417924 CCTCCTCATCAAGTCGTGGAAG 60.418 54.545 0.00 0.00 0.00 3.46
79 80 1.550524 TCCTCATCAAGTCGTGGAAGG 59.449 52.381 0.00 0.00 0.00 3.46
80 81 1.406069 CCTCATCAAGTCGTGGAAGGG 60.406 57.143 0.00 0.00 0.00 3.95
81 82 1.550524 CTCATCAAGTCGTGGAAGGGA 59.449 52.381 0.00 0.00 0.00 4.20
82 83 1.550524 TCATCAAGTCGTGGAAGGGAG 59.449 52.381 0.00 0.00 0.00 4.30
83 84 0.905357 ATCAAGTCGTGGAAGGGAGG 59.095 55.000 0.00 0.00 0.00 4.30
84 85 0.178944 TCAAGTCGTGGAAGGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
85 86 0.685097 CAAGTCGTGGAAGGGAGGAA 59.315 55.000 0.00 0.00 0.00 3.36
86 87 1.279271 CAAGTCGTGGAAGGGAGGAAT 59.721 52.381 0.00 0.00 0.00 3.01
87 88 2.500098 CAAGTCGTGGAAGGGAGGAATA 59.500 50.000 0.00 0.00 0.00 1.75
88 89 2.389715 AGTCGTGGAAGGGAGGAATAG 58.610 52.381 0.00 0.00 0.00 1.73
89 90 1.120530 TCGTGGAAGGGAGGAATAGC 58.879 55.000 0.00 0.00 0.00 2.97
90 91 0.249489 CGTGGAAGGGAGGAATAGCG 60.249 60.000 0.00 0.00 0.00 4.26
91 92 0.106894 GTGGAAGGGAGGAATAGCGG 59.893 60.000 0.00 0.00 0.00 5.52
92 93 1.071642 GGAAGGGAGGAATAGCGGC 59.928 63.158 0.00 0.00 0.00 6.53
93 94 1.696097 GGAAGGGAGGAATAGCGGCA 61.696 60.000 1.45 0.00 0.00 5.69
94 95 0.250081 GAAGGGAGGAATAGCGGCAG 60.250 60.000 1.45 0.00 0.00 4.85
95 96 1.700042 AAGGGAGGAATAGCGGCAGG 61.700 60.000 1.45 0.00 0.00 4.85
96 97 2.427753 GGAGGAATAGCGGCAGGG 59.572 66.667 1.45 0.00 0.00 4.45
97 98 2.427753 GAGGAATAGCGGCAGGGG 59.572 66.667 1.45 0.00 0.00 4.79
98 99 3.834013 GAGGAATAGCGGCAGGGGC 62.834 68.421 1.45 0.00 40.13 5.80
99 100 4.189580 GGAATAGCGGCAGGGGCA 62.190 66.667 1.45 0.00 43.71 5.36
100 101 2.113986 GAATAGCGGCAGGGGCAT 59.886 61.111 1.45 0.00 43.71 4.40
101 102 2.203394 AATAGCGGCAGGGGCATG 60.203 61.111 1.45 0.00 43.71 4.06
102 103 4.962836 ATAGCGGCAGGGGCATGC 62.963 66.667 9.90 9.90 45.74 4.06
115 116 2.898840 CATGCCCGCATCGAGCTT 60.899 61.111 0.00 0.00 42.61 3.74
116 117 2.590007 ATGCCCGCATCGAGCTTC 60.590 61.111 0.00 0.00 42.61 3.86
117 118 3.099211 ATGCCCGCATCGAGCTTCT 62.099 57.895 0.00 0.00 42.61 2.85
118 119 3.267860 GCCCGCATCGAGCTTCTG 61.268 66.667 0.00 0.00 42.61 3.02
119 120 3.267860 CCCGCATCGAGCTTCTGC 61.268 66.667 6.14 6.14 42.61 4.26
122 123 2.510238 GCATCGAGCTTCTGCGGT 60.510 61.111 0.00 0.00 45.42 5.68
123 124 2.806856 GCATCGAGCTTCTGCGGTG 61.807 63.158 1.64 1.64 45.42 4.94
124 125 2.510238 ATCGAGCTTCTGCGGTGC 60.510 61.111 5.39 5.39 45.42 5.01
137 138 3.434319 GGTGCGGCCATGACTGTG 61.434 66.667 2.24 0.00 37.17 3.66
138 139 3.434319 GTGCGGCCATGACTGTGG 61.434 66.667 2.24 0.00 42.35 4.17
139 140 3.952508 TGCGGCCATGACTGTGGT 61.953 61.111 2.24 0.00 41.47 4.16
140 141 3.127533 GCGGCCATGACTGTGGTC 61.128 66.667 2.24 0.00 41.47 4.02
142 143 2.436646 GGCCATGACTGTGGTCGG 60.437 66.667 0.00 0.00 44.83 4.79
143 144 2.436646 GCCATGACTGTGGTCGGG 60.437 66.667 0.00 0.00 44.83 5.14
144 145 2.436646 CCATGACTGTGGTCGGGC 60.437 66.667 0.00 0.00 44.83 6.13
145 146 2.815211 CATGACTGTGGTCGGGCG 60.815 66.667 0.00 0.00 44.83 6.13
146 147 2.994995 ATGACTGTGGTCGGGCGA 60.995 61.111 0.00 0.00 44.83 5.54
147 148 2.579657 ATGACTGTGGTCGGGCGAA 61.580 57.895 0.00 0.00 44.83 4.70
148 149 2.737376 GACTGTGGTCGGGCGAAC 60.737 66.667 0.00 0.00 32.47 3.95
149 150 4.657824 ACTGTGGTCGGGCGAACG 62.658 66.667 0.00 0.00 33.87 3.95
170 171 1.656652 CTGGAAGCATACAACTCCGG 58.343 55.000 0.00 0.00 0.00 5.14
171 172 0.981183 TGGAAGCATACAACTCCGGT 59.019 50.000 0.00 0.00 0.00 5.28
172 173 1.338674 TGGAAGCATACAACTCCGGTG 60.339 52.381 0.00 0.00 0.00 4.94
173 174 1.066430 GGAAGCATACAACTCCGGTGA 60.066 52.381 11.17 0.00 0.00 4.02
174 175 2.000447 GAAGCATACAACTCCGGTGAC 59.000 52.381 11.17 0.00 0.00 3.67
186 187 3.884900 GGTGACGTGTGGTATGGC 58.115 61.111 0.00 0.00 0.00 4.40
187 188 1.743995 GGTGACGTGTGGTATGGCC 60.744 63.158 0.00 0.00 37.90 5.36
188 189 1.004320 GTGACGTGTGGTATGGCCA 60.004 57.895 8.56 8.56 46.95 5.36
209 210 6.007936 CCAAAAATTGGTCAACGACATAGA 57.992 37.500 0.87 0.00 45.93 1.98
210 211 6.086222 CCAAAAATTGGTCAACGACATAGAG 58.914 40.000 0.87 0.00 45.93 2.43
211 212 4.946784 AAATTGGTCAACGACATAGAGC 57.053 40.909 0.00 0.00 33.68 4.09
212 213 1.990799 TTGGTCAACGACATAGAGCG 58.009 50.000 0.00 0.00 33.68 5.03
213 214 0.172578 TGGTCAACGACATAGAGCGG 59.827 55.000 0.00 0.00 33.68 5.52
214 215 0.172803 GGTCAACGACATAGAGCGGT 59.827 55.000 0.00 0.00 33.68 5.68
215 216 1.269166 GTCAACGACATAGAGCGGTG 58.731 55.000 0.00 0.00 45.91 4.94
218 219 1.460504 AACGACATAGAGCGGTGAGA 58.539 50.000 0.00 0.00 0.00 3.27
219 220 1.681538 ACGACATAGAGCGGTGAGAT 58.318 50.000 0.00 0.00 0.00 2.75
220 221 2.847441 ACGACATAGAGCGGTGAGATA 58.153 47.619 0.00 0.00 0.00 1.98
221 222 2.548904 ACGACATAGAGCGGTGAGATAC 59.451 50.000 0.00 0.00 0.00 2.24
222 223 2.548480 CGACATAGAGCGGTGAGATACA 59.452 50.000 0.00 0.00 0.00 2.29
223 224 3.364465 CGACATAGAGCGGTGAGATACAG 60.364 52.174 0.00 0.00 0.00 2.74
224 225 2.887783 ACATAGAGCGGTGAGATACAGG 59.112 50.000 0.00 0.00 0.00 4.00
225 226 2.730934 TAGAGCGGTGAGATACAGGT 57.269 50.000 0.00 0.00 37.91 4.00
226 227 1.853963 AGAGCGGTGAGATACAGGTT 58.146 50.000 0.00 0.00 35.35 3.50
227 228 1.478510 AGAGCGGTGAGATACAGGTTG 59.521 52.381 0.00 0.00 35.35 3.77
228 229 1.476891 GAGCGGTGAGATACAGGTTGA 59.523 52.381 0.00 0.00 35.35 3.18
229 230 2.101582 GAGCGGTGAGATACAGGTTGAT 59.898 50.000 0.00 0.00 35.35 2.57
230 231 2.101582 AGCGGTGAGATACAGGTTGATC 59.898 50.000 0.00 0.00 31.03 2.92
231 232 2.101582 GCGGTGAGATACAGGTTGATCT 59.898 50.000 0.00 0.00 35.07 2.75
232 233 3.318275 GCGGTGAGATACAGGTTGATCTA 59.682 47.826 0.00 0.00 32.47 1.98
233 234 4.557695 GCGGTGAGATACAGGTTGATCTAG 60.558 50.000 0.00 0.00 32.47 2.43
234 235 4.822350 CGGTGAGATACAGGTTGATCTAGA 59.178 45.833 0.00 0.00 32.47 2.43
235 236 5.049060 CGGTGAGATACAGGTTGATCTAGAG 60.049 48.000 0.00 0.00 32.47 2.43
236 237 5.242838 GGTGAGATACAGGTTGATCTAGAGG 59.757 48.000 0.00 0.00 32.47 3.69
237 238 5.242838 GTGAGATACAGGTTGATCTAGAGGG 59.757 48.000 0.00 0.00 32.47 4.30
238 239 5.134509 TGAGATACAGGTTGATCTAGAGGGA 59.865 44.000 0.00 0.00 32.47 4.20
239 240 5.640147 AGATACAGGTTGATCTAGAGGGAG 58.360 45.833 0.00 0.00 30.47 4.30
240 241 3.039252 ACAGGTTGATCTAGAGGGAGG 57.961 52.381 0.00 0.00 0.00 4.30
241 242 2.324541 CAGGTTGATCTAGAGGGAGGG 58.675 57.143 0.00 0.00 0.00 4.30
242 243 1.221781 AGGTTGATCTAGAGGGAGGGG 59.778 57.143 0.00 0.00 0.00 4.79
243 244 1.723288 GTTGATCTAGAGGGAGGGGG 58.277 60.000 0.00 0.00 0.00 5.40
259 260 4.040198 GGGGAGGAGGAGGGGGTT 62.040 72.222 0.00 0.00 0.00 4.11
260 261 2.692741 GGGAGGAGGAGGGGGTTG 60.693 72.222 0.00 0.00 0.00 3.77
261 262 2.125225 GGAGGAGGAGGGGGTTGT 59.875 66.667 0.00 0.00 0.00 3.32
262 263 1.394963 GGAGGAGGAGGGGGTTGTA 59.605 63.158 0.00 0.00 0.00 2.41
263 264 0.691413 GGAGGAGGAGGGGGTTGTAG 60.691 65.000 0.00 0.00 0.00 2.74
264 265 1.307084 AGGAGGAGGGGGTTGTAGC 60.307 63.158 0.00 0.00 0.00 3.58
265 266 1.615424 GGAGGAGGGGGTTGTAGCA 60.615 63.158 0.00 0.00 0.00 3.49
266 267 1.205460 GGAGGAGGGGGTTGTAGCAA 61.205 60.000 0.00 0.00 0.00 3.91
267 268 0.696501 GAGGAGGGGGTTGTAGCAAA 59.303 55.000 0.00 0.00 0.00 3.68
268 269 0.404426 AGGAGGGGGTTGTAGCAAAC 59.596 55.000 0.00 0.00 0.00 2.93
269 270 0.111639 GGAGGGGGTTGTAGCAAACA 59.888 55.000 0.00 0.00 35.88 2.83
270 271 1.479757 GGAGGGGGTTGTAGCAAACAA 60.480 52.381 0.88 0.88 45.90 2.83
276 277 1.649815 TTGTAGCAAACAACGGCGG 59.350 52.632 13.24 0.00 43.22 6.13
277 278 0.814410 TTGTAGCAAACAACGGCGGA 60.814 50.000 13.24 0.00 43.22 5.54
278 279 0.814410 TGTAGCAAACAACGGCGGAA 60.814 50.000 13.24 0.00 34.29 4.30
279 280 0.385098 GTAGCAAACAACGGCGGAAC 60.385 55.000 13.24 0.00 34.54 3.62
280 281 0.814410 TAGCAAACAACGGCGGAACA 60.814 50.000 13.24 0.00 34.54 3.18
281 282 1.226717 GCAAACAACGGCGGAACAA 60.227 52.632 13.24 0.00 0.00 2.83
282 283 1.476235 GCAAACAACGGCGGAACAAC 61.476 55.000 13.24 0.00 0.00 3.32
283 284 0.179161 CAAACAACGGCGGAACAACA 60.179 50.000 13.24 0.00 0.00 3.33
284 285 0.526662 AAACAACGGCGGAACAACAA 59.473 45.000 13.24 0.00 0.00 2.83
285 286 0.179158 AACAACGGCGGAACAACAAC 60.179 50.000 13.24 0.00 0.00 3.32
286 287 1.306642 ACAACGGCGGAACAACAACA 61.307 50.000 13.24 0.00 0.00 3.33
287 288 0.030101 CAACGGCGGAACAACAACAT 59.970 50.000 13.24 0.00 0.00 2.71
288 289 0.741915 AACGGCGGAACAACAACATT 59.258 45.000 13.24 0.00 0.00 2.71
289 290 0.741915 ACGGCGGAACAACAACATTT 59.258 45.000 13.24 0.00 0.00 2.32
290 291 1.127701 CGGCGGAACAACAACATTTG 58.872 50.000 0.00 0.00 0.00 2.32
291 292 1.496934 GGCGGAACAACAACATTTGG 58.503 50.000 0.00 0.00 34.12 3.28
292 293 0.858583 GCGGAACAACAACATTTGGC 59.141 50.000 0.00 0.00 34.12 4.52
293 294 1.127701 CGGAACAACAACATTTGGCG 58.872 50.000 0.00 0.00 34.12 5.69
294 295 1.496934 GGAACAACAACATTTGGCGG 58.503 50.000 0.00 0.00 34.12 6.13
295 296 1.496934 GAACAACAACATTTGGCGGG 58.503 50.000 0.00 0.00 34.12 6.13
296 297 0.531753 AACAACAACATTTGGCGGGC 60.532 50.000 0.00 0.00 34.12 6.13
297 298 1.068753 CAACAACATTTGGCGGGCA 59.931 52.632 0.00 0.00 34.12 5.36
298 299 0.945265 CAACAACATTTGGCGGGCAG 60.945 55.000 3.91 0.00 34.12 4.85
299 300 2.098426 AACAACATTTGGCGGGCAGG 62.098 55.000 3.91 1.48 34.12 4.85
300 301 2.996734 AACATTTGGCGGGCAGGG 60.997 61.111 3.91 1.11 0.00 4.45
320 321 3.595190 GGGGGTTGCATATTACCTCTT 57.405 47.619 5.17 0.00 35.16 2.85
321 322 3.487372 GGGGGTTGCATATTACCTCTTC 58.513 50.000 5.17 0.00 35.16 2.87
322 323 3.487372 GGGGTTGCATATTACCTCTTCC 58.513 50.000 5.31 0.00 31.91 3.46
323 324 3.139077 GGGTTGCATATTACCTCTTCCG 58.861 50.000 5.31 0.00 34.75 4.30
324 325 3.139077 GGTTGCATATTACCTCTTCCGG 58.861 50.000 0.00 0.00 0.00 5.14
325 326 2.543777 TGCATATTACCTCTTCCGGC 57.456 50.000 0.00 0.00 0.00 6.13
326 327 1.071699 TGCATATTACCTCTTCCGGCC 59.928 52.381 0.00 0.00 0.00 6.13
327 328 1.348036 GCATATTACCTCTTCCGGCCT 59.652 52.381 0.00 0.00 0.00 5.19
328 329 2.224548 GCATATTACCTCTTCCGGCCTT 60.225 50.000 0.00 0.00 0.00 4.35
329 330 3.665190 CATATTACCTCTTCCGGCCTTC 58.335 50.000 0.00 0.00 0.00 3.46
330 331 1.580059 ATTACCTCTTCCGGCCTTCA 58.420 50.000 0.00 0.00 0.00 3.02
331 332 1.354101 TTACCTCTTCCGGCCTTCAA 58.646 50.000 0.00 0.00 0.00 2.69
332 333 1.354101 TACCTCTTCCGGCCTTCAAA 58.646 50.000 0.00 0.00 0.00 2.69
333 334 0.698818 ACCTCTTCCGGCCTTCAAAT 59.301 50.000 0.00 0.00 0.00 2.32
334 335 1.913419 ACCTCTTCCGGCCTTCAAATA 59.087 47.619 0.00 0.00 0.00 1.40
335 336 2.509964 ACCTCTTCCGGCCTTCAAATAT 59.490 45.455 0.00 0.00 0.00 1.28
336 337 3.714798 ACCTCTTCCGGCCTTCAAATATA 59.285 43.478 0.00 0.00 0.00 0.86
337 338 4.202367 ACCTCTTCCGGCCTTCAAATATAG 60.202 45.833 0.00 0.00 0.00 1.31
338 339 4.319177 CTCTTCCGGCCTTCAAATATAGG 58.681 47.826 0.00 0.00 34.54 2.57
345 346 4.649088 GCCTTCAAATATAGGCGGTTTT 57.351 40.909 0.00 0.00 46.65 2.43
346 347 5.006153 GCCTTCAAATATAGGCGGTTTTT 57.994 39.130 0.00 0.00 46.65 1.94
347 348 4.803613 GCCTTCAAATATAGGCGGTTTTTG 59.196 41.667 0.00 0.00 46.65 2.44
348 349 4.803613 CCTTCAAATATAGGCGGTTTTTGC 59.196 41.667 0.00 0.00 0.00 3.68
349 350 5.392767 TTCAAATATAGGCGGTTTTTGCA 57.607 34.783 0.00 0.00 0.00 4.08
350 351 4.992688 TCAAATATAGGCGGTTTTTGCAG 58.007 39.130 0.00 0.00 0.00 4.41
351 352 3.436700 AATATAGGCGGTTTTTGCAGC 57.563 42.857 0.00 0.00 0.00 5.25
352 353 0.730265 TATAGGCGGTTTTTGCAGCG 59.270 50.000 0.00 0.00 40.67 5.18
353 354 1.241315 ATAGGCGGTTTTTGCAGCGT 61.241 50.000 0.00 0.00 39.87 5.07
354 355 2.123988 TAGGCGGTTTTTGCAGCGTG 62.124 55.000 0.00 0.00 39.87 5.34
355 356 3.691356 GCGGTTTTTGCAGCGTGC 61.691 61.111 3.44 3.44 45.29 5.34
356 357 2.026014 CGGTTTTTGCAGCGTGCT 59.974 55.556 10.54 0.00 45.31 4.40
357 358 2.010817 CGGTTTTTGCAGCGTGCTC 61.011 57.895 10.54 0.00 45.31 4.26
358 359 1.360192 GGTTTTTGCAGCGTGCTCT 59.640 52.632 10.54 0.00 45.31 4.09
359 360 0.591170 GGTTTTTGCAGCGTGCTCTA 59.409 50.000 10.54 0.00 45.31 2.43
360 361 1.001815 GGTTTTTGCAGCGTGCTCTAA 60.002 47.619 10.54 0.00 45.31 2.10
361 362 2.542824 GGTTTTTGCAGCGTGCTCTAAA 60.543 45.455 10.54 0.00 45.31 1.85
362 363 3.112580 GTTTTTGCAGCGTGCTCTAAAA 58.887 40.909 10.54 8.06 45.31 1.52
363 364 3.428746 TTTTGCAGCGTGCTCTAAAAA 57.571 38.095 10.54 6.21 45.31 1.94
381 382 4.509915 AAAAATATTACGACGAGCACGG 57.490 40.909 8.74 0.00 44.46 4.94
382 383 3.425577 AAATATTACGACGAGCACGGA 57.574 42.857 8.74 0.00 44.46 4.69
383 384 3.425577 AATATTACGACGAGCACGGAA 57.574 42.857 8.74 0.60 44.46 4.30
384 385 3.637998 ATATTACGACGAGCACGGAAT 57.362 42.857 8.74 8.18 44.70 3.01
385 386 4.754372 ATATTACGACGAGCACGGAATA 57.246 40.909 8.74 10.01 45.96 1.75
386 387 2.463553 TTACGACGAGCACGGAATAG 57.536 50.000 8.74 0.00 44.46 1.73
387 388 0.028505 TACGACGAGCACGGAATAGC 59.971 55.000 8.74 0.00 44.46 2.97
388 389 1.226575 CGACGAGCACGGAATAGCA 60.227 57.895 8.74 0.00 44.46 3.49
389 390 0.800683 CGACGAGCACGGAATAGCAA 60.801 55.000 8.74 0.00 44.46 3.91
390 391 1.355971 GACGAGCACGGAATAGCAAA 58.644 50.000 8.74 0.00 44.46 3.68
391 392 1.933853 GACGAGCACGGAATAGCAAAT 59.066 47.619 8.74 0.00 44.46 2.32
392 393 1.665679 ACGAGCACGGAATAGCAAATG 59.334 47.619 8.74 0.00 44.46 2.32
393 394 1.665679 CGAGCACGGAATAGCAAATGT 59.334 47.619 0.00 0.00 35.72 2.71
394 395 2.537529 CGAGCACGGAATAGCAAATGTG 60.538 50.000 0.00 0.00 35.72 3.21
404 405 3.607163 CAAATGTGCTGGGCCGAT 58.393 55.556 0.00 0.00 0.00 4.18
405 406 1.892338 CAAATGTGCTGGGCCGATT 59.108 52.632 0.00 0.00 0.00 3.34
406 407 0.247185 CAAATGTGCTGGGCCGATTT 59.753 50.000 0.00 0.00 0.00 2.17
407 408 1.476085 CAAATGTGCTGGGCCGATTTA 59.524 47.619 0.00 0.00 0.00 1.40
408 409 2.071778 AATGTGCTGGGCCGATTTAT 57.928 45.000 0.00 0.00 0.00 1.40
409 410 2.071778 ATGTGCTGGGCCGATTTATT 57.928 45.000 0.00 0.00 0.00 1.40
410 411 1.846007 TGTGCTGGGCCGATTTATTT 58.154 45.000 0.00 0.00 0.00 1.40
411 412 1.476085 TGTGCTGGGCCGATTTATTTG 59.524 47.619 0.00 0.00 0.00 2.32
412 413 1.110442 TGCTGGGCCGATTTATTTGG 58.890 50.000 0.00 0.00 0.00 3.28
413 414 1.341482 TGCTGGGCCGATTTATTTGGA 60.341 47.619 0.00 0.00 0.00 3.53
414 415 1.754226 GCTGGGCCGATTTATTTGGAA 59.246 47.619 0.00 0.00 0.00 3.53
415 416 2.223805 GCTGGGCCGATTTATTTGGAAG 60.224 50.000 0.00 0.00 0.00 3.46
416 417 3.287222 CTGGGCCGATTTATTTGGAAGA 58.713 45.455 0.00 0.00 0.00 2.87
417 418 3.699038 CTGGGCCGATTTATTTGGAAGAA 59.301 43.478 0.00 0.00 0.00 2.52
418 419 3.699038 TGGGCCGATTTATTTGGAAGAAG 59.301 43.478 0.00 0.00 0.00 2.85
419 420 3.699538 GGGCCGATTTATTTGGAAGAAGT 59.300 43.478 0.00 0.00 0.00 3.01
420 421 4.440112 GGGCCGATTTATTTGGAAGAAGTG 60.440 45.833 0.00 0.00 0.00 3.16
421 422 4.398044 GGCCGATTTATTTGGAAGAAGTGA 59.602 41.667 0.00 0.00 0.00 3.41
422 423 5.332707 GCCGATTTATTTGGAAGAAGTGAC 58.667 41.667 0.00 0.00 0.00 3.67
423 424 5.106317 GCCGATTTATTTGGAAGAAGTGACA 60.106 40.000 0.00 0.00 0.00 3.58
424 425 6.404734 GCCGATTTATTTGGAAGAAGTGACAT 60.405 38.462 0.00 0.00 0.00 3.06
425 426 7.189512 CCGATTTATTTGGAAGAAGTGACATC 58.810 38.462 0.00 0.00 0.00 3.06
426 427 7.189512 CGATTTATTTGGAAGAAGTGACATCC 58.810 38.462 0.00 0.00 0.00 3.51
427 428 7.148255 CGATTTATTTGGAAGAAGTGACATCCA 60.148 37.037 0.00 0.00 40.10 3.41
431 432 5.710513 TTGGAAGAAGTGACATCCAAATG 57.289 39.130 5.20 0.00 46.12 2.32
433 434 5.139727 TGGAAGAAGTGACATCCAAATGTT 58.860 37.500 0.00 0.00 46.20 2.71
434 435 5.598005 TGGAAGAAGTGACATCCAAATGTTT 59.402 36.000 0.00 0.00 46.20 2.83
435 436 6.098124 TGGAAGAAGTGACATCCAAATGTTTT 59.902 34.615 0.00 0.00 46.20 2.43
436 437 6.986231 GGAAGAAGTGACATCCAAATGTTTTT 59.014 34.615 0.00 0.00 46.20 1.94
437 438 8.141268 GGAAGAAGTGACATCCAAATGTTTTTA 58.859 33.333 0.00 0.00 46.20 1.52
438 439 9.696917 GAAGAAGTGACATCCAAATGTTTTTAT 57.303 29.630 0.00 0.00 46.20 1.40
479 480 8.794553 TGATAGATATACGAGGACTCTTTTTCC 58.205 37.037 0.00 0.00 0.00 3.13
480 481 8.943594 ATAGATATACGAGGACTCTTTTTCCT 57.056 34.615 0.00 0.00 46.87 3.36
481 482 7.663043 AGATATACGAGGACTCTTTTTCCTT 57.337 36.000 0.00 0.00 44.03 3.36
482 483 8.080363 AGATATACGAGGACTCTTTTTCCTTT 57.920 34.615 0.00 0.00 44.03 3.11
483 484 9.198475 AGATATACGAGGACTCTTTTTCCTTTA 57.802 33.333 0.00 0.00 44.03 1.85
484 485 9.247126 GATATACGAGGACTCTTTTTCCTTTAC 57.753 37.037 0.00 0.00 44.03 2.01
485 486 5.286267 ACGAGGACTCTTTTTCCTTTACA 57.714 39.130 0.00 0.00 44.03 2.41
486 487 5.298347 ACGAGGACTCTTTTTCCTTTACAG 58.702 41.667 0.00 0.00 44.03 2.74
487 488 4.152580 CGAGGACTCTTTTTCCTTTACAGC 59.847 45.833 0.00 0.00 44.03 4.40
488 489 5.309638 GAGGACTCTTTTTCCTTTACAGCT 58.690 41.667 0.00 0.00 44.03 4.24
489 490 5.696030 AGGACTCTTTTTCCTTTACAGCTT 58.304 37.500 0.00 0.00 40.95 3.74
490 491 6.129874 AGGACTCTTTTTCCTTTACAGCTTT 58.870 36.000 0.00 0.00 40.95 3.51
491 492 6.607600 AGGACTCTTTTTCCTTTACAGCTTTT 59.392 34.615 0.00 0.00 40.95 2.27
492 493 7.124298 AGGACTCTTTTTCCTTTACAGCTTTTT 59.876 33.333 0.00 0.00 40.95 1.94
493 494 7.435488 GGACTCTTTTTCCTTTACAGCTTTTTC 59.565 37.037 0.00 0.00 0.00 2.29
494 495 7.836842 ACTCTTTTTCCTTTACAGCTTTTTCA 58.163 30.769 0.00 0.00 0.00 2.69
495 496 8.311109 ACTCTTTTTCCTTTACAGCTTTTTCAA 58.689 29.630 0.00 0.00 0.00 2.69
496 497 9.150348 CTCTTTTTCCTTTACAGCTTTTTCAAA 57.850 29.630 0.00 0.00 0.00 2.69
497 498 8.931775 TCTTTTTCCTTTACAGCTTTTTCAAAC 58.068 29.630 0.00 0.00 0.00 2.93
498 499 8.608844 TTTTTCCTTTACAGCTTTTTCAAACA 57.391 26.923 0.00 0.00 0.00 2.83
499 500 8.608844 TTTTCCTTTACAGCTTTTTCAAACAA 57.391 26.923 0.00 0.00 0.00 2.83
500 501 8.608844 TTTCCTTTACAGCTTTTTCAAACAAA 57.391 26.923 0.00 0.00 0.00 2.83
548 549 3.438087 GCTAAAGTGCTCTTGCTCATTGA 59.562 43.478 1.02 0.00 40.48 2.57
554 555 2.823747 TGCTCTTGCTCATTGAATTGCT 59.176 40.909 2.44 0.00 40.48 3.91
557 558 4.797349 GCTCTTGCTCATTGAATTGCTAAC 59.203 41.667 2.44 0.00 36.03 2.34
589 591 1.333636 CGGCTGAGATCCCCTGAAGT 61.334 60.000 0.00 0.00 0.00 3.01
602 604 9.104713 AGATCCCCTGAAGTAAAAATCAAAATT 57.895 29.630 0.00 0.00 0.00 1.82
641 643 3.071747 ACATCATCAGCTCTGCAGATCAT 59.928 43.478 18.63 3.04 32.63 2.45
665 669 1.836802 AGGATCCTTTGTGGCTCTCTC 59.163 52.381 9.02 0.00 31.89 3.20
682 686 2.166459 CTCTCCTCGCTACCACAATCAA 59.834 50.000 0.00 0.00 0.00 2.57
683 687 2.766263 TCTCCTCGCTACCACAATCAAT 59.234 45.455 0.00 0.00 0.00 2.57
684 688 3.126831 CTCCTCGCTACCACAATCAATC 58.873 50.000 0.00 0.00 0.00 2.67
685 689 1.860950 CCTCGCTACCACAATCAATCG 59.139 52.381 0.00 0.00 0.00 3.34
686 690 1.258982 CTCGCTACCACAATCAATCGC 59.741 52.381 0.00 0.00 0.00 4.58
687 691 1.006086 CGCTACCACAATCAATCGCA 58.994 50.000 0.00 0.00 0.00 5.10
688 692 1.267532 CGCTACCACAATCAATCGCAC 60.268 52.381 0.00 0.00 0.00 5.34
689 693 1.267532 GCTACCACAATCAATCGCACG 60.268 52.381 0.00 0.00 0.00 5.34
690 694 1.327460 CTACCACAATCAATCGCACGG 59.673 52.381 0.00 0.00 0.00 4.94
691 695 1.226379 CCACAATCAATCGCACGGC 60.226 57.895 0.00 0.00 0.00 5.68
694 698 1.031571 ACAATCAATCGCACGGCCAT 61.032 50.000 2.24 0.00 0.00 4.40
727 731 0.040067 GCGCAGACAAAAACCAGAGG 60.040 55.000 0.30 0.00 0.00 3.69
731 735 1.144913 CAGACAAAAACCAGAGGGGGA 59.855 52.381 0.00 0.00 42.91 4.81
732 736 1.425448 AGACAAAAACCAGAGGGGGAG 59.575 52.381 0.00 0.00 42.91 4.30
736 740 1.299939 AAAACCAGAGGGGGAGATCC 58.700 55.000 0.00 0.00 42.91 3.36
737 741 0.983378 AAACCAGAGGGGGAGATCCG 60.983 60.000 0.00 0.00 42.91 4.18
739 748 3.237741 CAGAGGGGGAGATCCGGC 61.238 72.222 0.00 0.00 36.71 6.13
747 756 1.360911 GGAGATCCGGCTTCTCGAC 59.639 63.158 21.05 9.96 40.46 4.20
756 765 2.806237 CTTCTCGACCCTACCGCC 59.194 66.667 0.00 0.00 0.00 6.13
757 766 3.122250 CTTCTCGACCCTACCGCCG 62.122 68.421 0.00 0.00 0.00 6.46
804 813 5.662211 TTCCGTAGAAAAAGAAAGAACCG 57.338 39.130 0.00 0.00 0.00 4.44
826 840 0.179059 TTGGAAGCACTCAGAACGCA 60.179 50.000 0.00 0.00 0.00 5.24
840 854 1.792367 GAACGCAAAGCCAATCAAACC 59.208 47.619 0.00 0.00 0.00 3.27
865 879 1.839424 CTGGGTTGGTTTCCTCCATC 58.161 55.000 0.00 0.00 37.33 3.51
869 883 2.379005 GGTTGGTTTCCTCCATCCATC 58.621 52.381 7.66 0.00 43.26 3.51
886 900 2.615227 ATCCCGCTCAACATGGCTCC 62.615 60.000 0.00 0.00 0.00 4.70
894 908 1.833630 TCAACATGGCTCCTCAGGTAG 59.166 52.381 0.00 0.00 31.03 3.18
1036 1051 0.388649 CGAGGACCTCAAGAACCACG 60.389 60.000 21.49 0.60 0.00 4.94
1192 1426 0.108774 TGGGTGTCGCAAACCATGTA 59.891 50.000 2.25 0.00 39.65 2.29
1318 1553 5.578005 TTATCCTCTGTCGATTCGAACTT 57.422 39.130 10.87 0.00 37.72 2.66
1331 1566 9.302773 GTCGATTCGAACTTATACAATTTATGC 57.697 33.333 10.87 0.00 37.72 3.14
1340 1575 7.573710 ACTTATACAATTTATGCTCCTCACCA 58.426 34.615 0.00 0.00 0.00 4.17
1341 1576 7.499232 ACTTATACAATTTATGCTCCTCACCAC 59.501 37.037 0.00 0.00 0.00 4.16
1371 1653 1.595311 ACTGCTGGGAATGGATACCA 58.405 50.000 0.00 0.00 38.19 3.25
1460 1757 5.611374 TGAATTATTTTCAAAAACGGCCCA 58.389 33.333 0.00 0.00 0.00 5.36
1718 2016 0.093026 CGCTTCTCTTTAACCGTGCG 59.907 55.000 0.00 0.00 36.41 5.34
1777 2090 2.497675 TCGCTTGCTGAAGGACTATCTT 59.502 45.455 0.00 0.00 0.00 2.40
1780 2093 3.620821 GCTTGCTGAAGGACTATCTTGAC 59.379 47.826 0.00 0.00 0.00 3.18
1784 2097 5.907207 TGCTGAAGGACTATCTTGACATAC 58.093 41.667 0.00 0.00 0.00 2.39
1864 2177 2.026301 GCCGACGAAGAGATCCGG 59.974 66.667 0.00 0.00 42.74 5.14
1944 2257 3.496870 CGGATCTGGATAAAAGAAGGGGG 60.497 52.174 0.00 0.00 0.00 5.40
1945 2258 3.491342 GATCTGGATAAAAGAAGGGGGC 58.509 50.000 0.00 0.00 0.00 5.80
2026 2339 5.119694 GTGAAGGTACTGATTGGGATCTTC 58.880 45.833 0.00 0.00 40.86 2.87
2040 2353 8.877864 ATTGGGATCTTCTATGTGTTTTTACA 57.122 30.769 0.00 0.00 34.63 2.41
2068 2384 5.306532 AGAGCTGTTGCAGTGATTATTTG 57.693 39.130 0.00 0.00 42.74 2.32
2071 2388 4.279169 AGCTGTTGCAGTGATTATTTGTGT 59.721 37.500 0.00 0.00 42.74 3.72
2075 2392 6.851609 TGTTGCAGTGATTATTTGTGTATCC 58.148 36.000 0.00 0.00 0.00 2.59
2088 2405 9.761504 TTATTTGTGTATCCCATTTTGCATATG 57.238 29.630 0.00 0.00 0.00 1.78
2095 2412 9.311676 TGTATCCCATTTTGCATATGAATATGT 57.688 29.630 6.97 0.00 41.63 2.29
2096 2413 9.793252 GTATCCCATTTTGCATATGAATATGTC 57.207 33.333 6.97 5.40 41.63 3.06
2098 2415 7.888424 TCCCATTTTGCATATGAATATGTCTG 58.112 34.615 6.97 3.76 41.63 3.51
2099 2416 7.724951 TCCCATTTTGCATATGAATATGTCTGA 59.275 33.333 6.97 3.78 41.63 3.27
2100 2417 8.361889 CCCATTTTGCATATGAATATGTCTGAA 58.638 33.333 6.97 3.76 41.63 3.02
2101 2418 9.752961 CCATTTTGCATATGAATATGTCTGAAA 57.247 29.630 6.97 7.91 41.63 2.69
2103 2420 9.976511 ATTTTGCATATGAATATGTCTGAAAGG 57.023 29.630 6.97 0.00 41.63 3.11
2104 2421 7.514784 TTGCATATGAATATGTCTGAAAGGG 57.485 36.000 6.97 0.00 41.63 3.95
2105 2422 5.474532 TGCATATGAATATGTCTGAAAGGGC 59.525 40.000 6.97 0.00 41.63 5.19
2130 2447 2.798976 TTGTCAACCAAGCTCAATGC 57.201 45.000 0.00 0.00 43.29 3.56
2143 2460 6.369340 CCAAGCTCAATGCAAACATGATTTAA 59.631 34.615 0.00 0.00 45.94 1.52
2150 2467 8.087136 TCAATGCAAACATGATTTAAGCACTAA 58.913 29.630 0.00 0.00 36.36 2.24
2152 2469 8.830201 ATGCAAACATGATTTAAGCACTAAAA 57.170 26.923 0.00 0.00 34.35 1.52
2153 2470 8.296799 TGCAAACATGATTTAAGCACTAAAAG 57.703 30.769 0.00 0.00 33.20 2.27
2155 2472 9.143631 GCAAACATGATTTAAGCACTAAAAGAT 57.856 29.630 0.00 0.00 33.20 2.40
2180 2497 0.618458 GGGCATCTGTAGAACCACCA 59.382 55.000 6.64 0.00 0.00 4.17
2211 2528 3.601356 CGCAAGTCGCAAAATAGATCTG 58.399 45.455 5.18 0.00 42.60 2.90
2238 2555 7.864686 TGATCAACAAGATGTTTGACAACTAG 58.135 34.615 0.00 0.00 38.77 2.57
2337 2853 6.790319 ACTGGGTCCTTATCAAACTTAACAT 58.210 36.000 0.00 0.00 0.00 2.71
2397 2915 1.004918 GGGAGAACCAGTGTGGACG 60.005 63.158 0.00 0.00 40.96 4.79
2456 2974 4.682859 GCAAGAGTATGTCAAGAGGCTCAT 60.683 45.833 18.26 0.57 0.00 2.90
2469 2987 1.718757 GGCTCATGGACGACAATGCC 61.719 60.000 0.00 4.45 36.28 4.40
2521 3043 5.316167 TGTTTGTGATTCCTCAGCTATGTT 58.684 37.500 0.00 0.00 30.18 2.71
2606 3132 6.822170 CCAGATAGATATGCTACCTACGTACA 59.178 42.308 0.00 0.00 0.00 2.90
2607 3133 7.011576 CCAGATAGATATGCTACCTACGTACAG 59.988 44.444 0.00 0.00 0.00 2.74
2608 3134 7.549842 CAGATAGATATGCTACCTACGTACAGT 59.450 40.741 0.00 0.00 0.00 3.55
2609 3135 8.756927 AGATAGATATGCTACCTACGTACAGTA 58.243 37.037 0.00 0.00 0.00 2.74
2610 3136 8.715191 ATAGATATGCTACCTACGTACAGTAC 57.285 38.462 0.00 0.00 0.00 2.73
2659 3944 6.605849 CATGTGCTATACTGCCATATCAAAC 58.394 40.000 0.00 0.00 0.00 2.93
2666 3951 7.117523 GCTATACTGCCATATCAAACTCTCAAG 59.882 40.741 0.00 0.00 0.00 3.02
2742 4027 5.475564 AGTTGCATTAACCGGACAGTAATTT 59.524 36.000 9.46 0.00 40.24 1.82
2747 4032 6.526674 GCATTAACCGGACAGTAATTTTTCAG 59.473 38.462 9.46 0.00 0.00 3.02
2776 4061 7.601886 CACACATCAATCTATGATCTTAGGACC 59.398 40.741 13.97 0.00 45.91 4.46
2777 4062 7.290948 ACACATCAATCTATGATCTTAGGACCA 59.709 37.037 13.97 0.00 45.91 4.02
2812 4097 3.257393 CCCTTGAAGTGAAGACAGATCG 58.743 50.000 0.00 0.00 0.00 3.69
2832 4117 6.881065 AGATCGAATTCTTGGTCAAATCTTCA 59.119 34.615 3.52 0.00 0.00 3.02
2834 4119 7.452880 TCGAATTCTTGGTCAAATCTTCATT 57.547 32.000 3.52 0.00 0.00 2.57
2835 4120 7.530010 TCGAATTCTTGGTCAAATCTTCATTC 58.470 34.615 3.52 0.00 0.00 2.67
2851 4136 5.073691 TCTTCATTCTCCACTCCTTTTCCTT 59.926 40.000 0.00 0.00 0.00 3.36
2853 4138 5.072741 TCATTCTCCACTCCTTTTCCTTTG 58.927 41.667 0.00 0.00 0.00 2.77
2854 4139 3.508845 TCTCCACTCCTTTTCCTTTGG 57.491 47.619 0.00 0.00 0.00 3.28
2855 4140 1.889170 CTCCACTCCTTTTCCTTTGGC 59.111 52.381 0.00 0.00 0.00 4.52
2859 4150 2.555757 CACTCCTTTTCCTTTGGCTGAG 59.444 50.000 0.00 0.00 0.00 3.35
2861 4152 1.780309 TCCTTTTCCTTTGGCTGAGGA 59.220 47.619 5.48 5.48 41.46 3.71
2878 4175 5.029807 TGAGGAAACATATCGCCAACATA 57.970 39.130 0.00 0.00 0.00 2.29
2880 4177 6.764379 TGAGGAAACATATCGCCAACATATA 58.236 36.000 0.00 0.00 0.00 0.86
2885 4182 6.360370 AACATATCGCCAACATATACTCCT 57.640 37.500 0.00 0.00 0.00 3.69
2886 4183 7.476540 AACATATCGCCAACATATACTCCTA 57.523 36.000 0.00 0.00 0.00 2.94
3051 4461 6.995511 AGTACTAAAGACACACAGCAAAAA 57.004 33.333 0.00 0.00 0.00 1.94
3056 4466 6.756542 ACTAAAGACACACAGCAAAAATTTCC 59.243 34.615 0.00 0.00 0.00 3.13
3120 4538 8.204160 TGAACTTTCTACCCATACATACATCTG 58.796 37.037 0.00 0.00 0.00 2.90
3129 4547 6.156949 ACCCATACATACATCTGAACTCAAGT 59.843 38.462 0.00 0.00 0.00 3.16
3130 4548 6.481313 CCCATACATACATCTGAACTCAAGTG 59.519 42.308 0.00 0.00 0.00 3.16
3172 4590 0.583438 CGGTCAATGATCCGTCATGC 59.417 55.000 13.47 0.00 44.20 4.06
3236 4654 1.066430 TCATGTCGTAAACCCCAGAGC 60.066 52.381 0.00 0.00 0.00 4.09
3244 4662 0.768221 AAACCCCAGAGCAGAGGTCA 60.768 55.000 0.00 0.00 31.89 4.02
3248 4666 0.902048 CCCAGAGCAGAGGTCACTCA 60.902 60.000 0.00 0.00 46.44 3.41
3297 4715 5.580297 CCTTGAGAAAGTAGATGCAGTCTTC 59.420 44.000 0.00 0.00 38.42 2.87
3298 4716 5.078411 TGAGAAAGTAGATGCAGTCTTCC 57.922 43.478 0.00 0.00 38.42 3.46
3376 4794 4.537433 AAGAGAGCGCGCCCCATC 62.537 66.667 30.33 19.19 0.00 3.51
3404 4822 3.827898 CGTCTCTCCACCGCCCTC 61.828 72.222 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.135306 CTCCATCTCCCTCATCAACAATG 58.865 47.826 0.00 0.00 36.65 2.82
1 2 3.784763 ACTCCATCTCCCTCATCAACAAT 59.215 43.478 0.00 0.00 0.00 2.71
2 3 3.184628 ACTCCATCTCCCTCATCAACAA 58.815 45.455 0.00 0.00 0.00 2.83
3 4 2.837947 ACTCCATCTCCCTCATCAACA 58.162 47.619 0.00 0.00 0.00 3.33
4 5 3.539604 CAACTCCATCTCCCTCATCAAC 58.460 50.000 0.00 0.00 0.00 3.18
5 6 2.507058 CCAACTCCATCTCCCTCATCAA 59.493 50.000 0.00 0.00 0.00 2.57
6 7 2.121948 CCAACTCCATCTCCCTCATCA 58.878 52.381 0.00 0.00 0.00 3.07
7 8 1.202746 GCCAACTCCATCTCCCTCATC 60.203 57.143 0.00 0.00 0.00 2.92
8 9 0.842635 GCCAACTCCATCTCCCTCAT 59.157 55.000 0.00 0.00 0.00 2.90
9 10 0.547471 TGCCAACTCCATCTCCCTCA 60.547 55.000 0.00 0.00 0.00 3.86
10 11 0.620556 TTGCCAACTCCATCTCCCTC 59.379 55.000 0.00 0.00 0.00 4.30
11 12 1.064166 CATTGCCAACTCCATCTCCCT 60.064 52.381 0.00 0.00 0.00 4.20
12 13 1.064463 TCATTGCCAACTCCATCTCCC 60.064 52.381 0.00 0.00 0.00 4.30
13 14 2.019984 GTCATTGCCAACTCCATCTCC 58.980 52.381 0.00 0.00 0.00 3.71
14 15 1.667724 CGTCATTGCCAACTCCATCTC 59.332 52.381 0.00 0.00 0.00 2.75
15 16 1.679944 CCGTCATTGCCAACTCCATCT 60.680 52.381 0.00 0.00 0.00 2.90
16 17 0.734889 CCGTCATTGCCAACTCCATC 59.265 55.000 0.00 0.00 0.00 3.51
17 18 0.327924 TCCGTCATTGCCAACTCCAT 59.672 50.000 0.00 0.00 0.00 3.41
18 19 0.605319 GTCCGTCATTGCCAACTCCA 60.605 55.000 0.00 0.00 0.00 3.86
19 20 1.635663 CGTCCGTCATTGCCAACTCC 61.636 60.000 0.00 0.00 0.00 3.85
20 21 1.635663 CCGTCCGTCATTGCCAACTC 61.636 60.000 0.00 0.00 0.00 3.01
21 22 1.671054 CCGTCCGTCATTGCCAACT 60.671 57.895 0.00 0.00 0.00 3.16
22 23 1.512156 AACCGTCCGTCATTGCCAAC 61.512 55.000 0.00 0.00 0.00 3.77
23 24 1.228003 AACCGTCCGTCATTGCCAA 60.228 52.632 0.00 0.00 0.00 4.52
24 25 1.963855 CAACCGTCCGTCATTGCCA 60.964 57.895 0.00 0.00 0.00 4.92
25 26 1.669760 TCAACCGTCCGTCATTGCC 60.670 57.895 0.00 0.00 0.00 4.52
26 27 1.495951 GTCAACCGTCCGTCATTGC 59.504 57.895 0.00 0.00 0.00 3.56
27 28 1.779061 CGTCAACCGTCCGTCATTG 59.221 57.895 0.00 0.00 0.00 2.82
28 29 2.025418 GCGTCAACCGTCCGTCATT 61.025 57.895 0.00 0.00 39.32 2.57
29 30 2.431942 GCGTCAACCGTCCGTCAT 60.432 61.111 0.00 0.00 39.32 3.06
30 31 4.986587 CGCGTCAACCGTCCGTCA 62.987 66.667 0.00 0.00 39.32 4.35
31 32 4.988486 ACGCGTCAACCGTCCGTC 62.988 66.667 5.58 0.00 39.32 4.79
33 34 4.986587 TCACGCGTCAACCGTCCG 62.987 66.667 9.86 0.00 36.69 4.79
34 35 2.431942 ATCACGCGTCAACCGTCC 60.432 61.111 9.86 0.00 36.69 4.79
35 36 1.941476 GACATCACGCGTCAACCGTC 61.941 60.000 9.86 8.43 36.69 4.79
36 37 2.019951 GACATCACGCGTCAACCGT 61.020 57.895 9.86 1.79 39.91 4.83
37 38 1.553195 TTGACATCACGCGTCAACCG 61.553 55.000 9.86 0.00 45.85 4.44
38 39 2.230892 TTGACATCACGCGTCAACC 58.769 52.632 9.86 0.00 45.85 3.77
41 42 0.666274 GAGGTTGACATCACGCGTCA 60.666 55.000 9.86 0.00 41.53 4.35
42 43 1.352156 GGAGGTTGACATCACGCGTC 61.352 60.000 9.86 0.00 0.00 5.19
43 44 1.374252 GGAGGTTGACATCACGCGT 60.374 57.895 5.58 5.58 0.00 6.01
44 45 1.078759 GAGGAGGTTGACATCACGCG 61.079 60.000 3.53 3.53 0.00 6.01
45 46 0.037326 TGAGGAGGTTGACATCACGC 60.037 55.000 0.00 0.00 0.00 5.34
46 47 2.094026 TGATGAGGAGGTTGACATCACG 60.094 50.000 0.00 0.00 42.31 4.35
47 48 3.616956 TGATGAGGAGGTTGACATCAC 57.383 47.619 0.00 0.00 42.31 3.06
48 49 3.584406 ACTTGATGAGGAGGTTGACATCA 59.416 43.478 0.00 0.00 44.40 3.07
49 50 4.187694 GACTTGATGAGGAGGTTGACATC 58.812 47.826 0.00 0.00 39.35 3.06
50 51 3.368843 CGACTTGATGAGGAGGTTGACAT 60.369 47.826 0.00 0.00 0.00 3.06
51 52 2.029020 CGACTTGATGAGGAGGTTGACA 60.029 50.000 0.00 0.00 0.00 3.58
52 53 2.028930 ACGACTTGATGAGGAGGTTGAC 60.029 50.000 0.00 0.00 0.00 3.18
53 54 2.029020 CACGACTTGATGAGGAGGTTGA 60.029 50.000 0.00 0.00 0.00 3.18
54 55 2.341257 CACGACTTGATGAGGAGGTTG 58.659 52.381 0.00 0.00 0.00 3.77
55 56 1.276421 CCACGACTTGATGAGGAGGTT 59.724 52.381 0.00 0.00 0.00 3.50
56 57 0.898320 CCACGACTTGATGAGGAGGT 59.102 55.000 0.00 0.00 0.00 3.85
57 58 1.186200 TCCACGACTTGATGAGGAGG 58.814 55.000 0.00 0.00 0.00 4.30
58 59 2.417924 CCTTCCACGACTTGATGAGGAG 60.418 54.545 0.00 0.00 0.00 3.69
59 60 1.550524 CCTTCCACGACTTGATGAGGA 59.449 52.381 0.00 0.00 0.00 3.71
60 61 1.406069 CCCTTCCACGACTTGATGAGG 60.406 57.143 0.00 0.00 0.00 3.86
61 62 1.550524 TCCCTTCCACGACTTGATGAG 59.449 52.381 0.00 0.00 0.00 2.90
62 63 1.550524 CTCCCTTCCACGACTTGATGA 59.449 52.381 0.00 0.00 0.00 2.92
63 64 1.406069 CCTCCCTTCCACGACTTGATG 60.406 57.143 0.00 0.00 0.00 3.07
64 65 0.905357 CCTCCCTTCCACGACTTGAT 59.095 55.000 0.00 0.00 0.00 2.57
65 66 0.178944 TCCTCCCTTCCACGACTTGA 60.179 55.000 0.00 0.00 0.00 3.02
66 67 0.685097 TTCCTCCCTTCCACGACTTG 59.315 55.000 0.00 0.00 0.00 3.16
67 68 1.657804 ATTCCTCCCTTCCACGACTT 58.342 50.000 0.00 0.00 0.00 3.01
68 69 2.389715 CTATTCCTCCCTTCCACGACT 58.610 52.381 0.00 0.00 0.00 4.18
69 70 1.202545 GCTATTCCTCCCTTCCACGAC 60.203 57.143 0.00 0.00 0.00 4.34
70 71 1.120530 GCTATTCCTCCCTTCCACGA 58.879 55.000 0.00 0.00 0.00 4.35
71 72 0.249489 CGCTATTCCTCCCTTCCACG 60.249 60.000 0.00 0.00 0.00 4.94
72 73 0.106894 CCGCTATTCCTCCCTTCCAC 59.893 60.000 0.00 0.00 0.00 4.02
73 74 1.696097 GCCGCTATTCCTCCCTTCCA 61.696 60.000 0.00 0.00 0.00 3.53
74 75 1.071642 GCCGCTATTCCTCCCTTCC 59.928 63.158 0.00 0.00 0.00 3.46
75 76 0.250081 CTGCCGCTATTCCTCCCTTC 60.250 60.000 0.00 0.00 0.00 3.46
76 77 1.700042 CCTGCCGCTATTCCTCCCTT 61.700 60.000 0.00 0.00 0.00 3.95
77 78 2.143419 CCTGCCGCTATTCCTCCCT 61.143 63.158 0.00 0.00 0.00 4.20
78 79 2.427753 CCTGCCGCTATTCCTCCC 59.572 66.667 0.00 0.00 0.00 4.30
79 80 2.427753 CCCTGCCGCTATTCCTCC 59.572 66.667 0.00 0.00 0.00 4.30
80 81 2.427753 CCCCTGCCGCTATTCCTC 59.572 66.667 0.00 0.00 0.00 3.71
81 82 3.878667 GCCCCTGCCGCTATTCCT 61.879 66.667 0.00 0.00 0.00 3.36
82 83 3.497884 ATGCCCCTGCCGCTATTCC 62.498 63.158 0.00 0.00 36.33 3.01
83 84 2.113986 ATGCCCCTGCCGCTATTC 59.886 61.111 0.00 0.00 36.33 1.75
84 85 2.203394 CATGCCCCTGCCGCTATT 60.203 61.111 0.00 0.00 36.33 1.73
85 86 4.962836 GCATGCCCCTGCCGCTAT 62.963 66.667 6.36 0.00 36.10 2.97
105 106 2.510238 ACCGCAGAAGCTCGATGC 60.510 61.111 7.50 7.50 43.29 3.91
106 107 2.806856 GCACCGCAGAAGCTCGATG 61.807 63.158 0.00 0.00 39.10 3.84
107 108 2.510238 GCACCGCAGAAGCTCGAT 60.510 61.111 0.00 0.00 39.10 3.59
120 121 3.434319 CACAGTCATGGCCGCACC 61.434 66.667 0.00 0.00 39.84 5.01
121 122 3.434319 CCACAGTCATGGCCGCAC 61.434 66.667 0.00 0.00 31.52 5.34
122 123 3.899981 GACCACAGTCATGGCCGCA 62.900 63.158 0.00 0.00 44.33 5.69
123 124 3.127533 GACCACAGTCATGGCCGC 61.128 66.667 0.00 0.00 44.33 6.53
124 125 2.815211 CGACCACAGTCATGGCCG 60.815 66.667 0.00 0.00 44.33 6.13
125 126 2.436646 CCGACCACAGTCATGGCC 60.437 66.667 0.00 0.00 44.33 5.36
126 127 2.436646 CCCGACCACAGTCATGGC 60.437 66.667 0.00 0.00 44.33 4.40
127 128 2.436646 GCCCGACCACAGTCATGG 60.437 66.667 0.00 0.00 43.73 3.66
128 129 2.779951 TTCGCCCGACCACAGTCATG 62.780 60.000 0.00 0.00 43.73 3.07
129 130 2.579657 TTCGCCCGACCACAGTCAT 61.580 57.895 0.00 0.00 43.73 3.06
130 131 3.228017 TTCGCCCGACCACAGTCA 61.228 61.111 0.00 0.00 43.73 3.41
131 132 2.737376 GTTCGCCCGACCACAGTC 60.737 66.667 0.00 0.00 39.83 3.51
132 133 4.657824 CGTTCGCCCGACCACAGT 62.658 66.667 0.00 0.00 0.00 3.55
143 144 1.813753 TATGCTTCCAGCCGTTCGC 60.814 57.895 0.00 0.00 41.51 4.70
144 145 0.739462 TGTATGCTTCCAGCCGTTCG 60.739 55.000 0.00 0.00 41.51 3.95
145 146 1.130561 GTTGTATGCTTCCAGCCGTTC 59.869 52.381 0.00 0.00 41.51 3.95
146 147 1.165270 GTTGTATGCTTCCAGCCGTT 58.835 50.000 0.00 0.00 41.51 4.44
147 148 0.324943 AGTTGTATGCTTCCAGCCGT 59.675 50.000 0.00 0.00 41.51 5.68
148 149 1.009829 GAGTTGTATGCTTCCAGCCG 58.990 55.000 0.00 0.00 41.51 5.52
149 150 1.383523 GGAGTTGTATGCTTCCAGCC 58.616 55.000 0.00 0.00 41.51 4.85
150 151 1.009829 CGGAGTTGTATGCTTCCAGC 58.990 55.000 0.00 0.00 42.82 4.85
151 152 1.066143 ACCGGAGTTGTATGCTTCCAG 60.066 52.381 9.46 0.00 0.00 3.86
152 153 0.981183 ACCGGAGTTGTATGCTTCCA 59.019 50.000 9.46 0.00 0.00 3.53
153 154 1.066430 TCACCGGAGTTGTATGCTTCC 60.066 52.381 9.46 0.00 0.00 3.46
154 155 2.000447 GTCACCGGAGTTGTATGCTTC 59.000 52.381 9.46 0.00 0.00 3.86
155 156 1.671850 CGTCACCGGAGTTGTATGCTT 60.672 52.381 9.46 0.00 0.00 3.91
156 157 0.108804 CGTCACCGGAGTTGTATGCT 60.109 55.000 9.46 0.00 0.00 3.79
157 158 0.389426 ACGTCACCGGAGTTGTATGC 60.389 55.000 9.46 0.00 38.78 3.14
158 159 1.336517 ACACGTCACCGGAGTTGTATG 60.337 52.381 9.46 0.00 38.78 2.39
159 160 0.963962 ACACGTCACCGGAGTTGTAT 59.036 50.000 9.46 0.00 38.78 2.29
160 161 0.031043 CACACGTCACCGGAGTTGTA 59.969 55.000 9.46 0.00 38.78 2.41
161 162 1.227147 CACACGTCACCGGAGTTGT 60.227 57.895 9.46 2.89 38.78 3.32
162 163 1.954146 CCACACGTCACCGGAGTTG 60.954 63.158 9.46 0.00 38.78 3.16
163 164 1.108727 TACCACACGTCACCGGAGTT 61.109 55.000 9.46 0.00 38.78 3.01
164 165 0.896940 ATACCACACGTCACCGGAGT 60.897 55.000 9.46 0.00 38.78 3.85
165 166 0.457853 CATACCACACGTCACCGGAG 60.458 60.000 9.46 0.00 38.78 4.63
166 167 1.587568 CATACCACACGTCACCGGA 59.412 57.895 9.46 0.00 38.78 5.14
167 168 1.447140 CCATACCACACGTCACCGG 60.447 63.158 0.00 0.00 38.78 5.28
168 169 2.098233 GCCATACCACACGTCACCG 61.098 63.158 0.00 0.00 40.83 4.94
169 170 1.743995 GGCCATACCACACGTCACC 60.744 63.158 0.00 0.00 38.86 4.02
170 171 1.004320 TGGCCATACCACACGTCAC 60.004 57.895 0.00 0.00 46.36 3.67
171 172 3.472809 TGGCCATACCACACGTCA 58.527 55.556 0.00 0.00 46.36 4.35
187 188 5.569059 GCTCTATGTCGTTGACCAATTTTTG 59.431 40.000 0.00 0.00 0.00 2.44
188 189 5.616866 CGCTCTATGTCGTTGACCAATTTTT 60.617 40.000 0.00 0.00 0.00 1.94
189 190 4.142902 CGCTCTATGTCGTTGACCAATTTT 60.143 41.667 0.00 0.00 0.00 1.82
190 191 3.370978 CGCTCTATGTCGTTGACCAATTT 59.629 43.478 0.00 0.00 0.00 1.82
191 192 2.930040 CGCTCTATGTCGTTGACCAATT 59.070 45.455 0.00 0.00 0.00 2.32
192 193 2.540515 CGCTCTATGTCGTTGACCAAT 58.459 47.619 0.00 0.00 0.00 3.16
193 194 1.403647 CCGCTCTATGTCGTTGACCAA 60.404 52.381 0.00 0.00 0.00 3.67
194 195 0.172578 CCGCTCTATGTCGTTGACCA 59.827 55.000 0.00 0.00 0.00 4.02
195 196 0.172803 ACCGCTCTATGTCGTTGACC 59.827 55.000 0.00 0.00 0.00 4.02
196 197 1.135489 TCACCGCTCTATGTCGTTGAC 60.135 52.381 0.00 0.00 0.00 3.18
197 198 1.132453 CTCACCGCTCTATGTCGTTGA 59.868 52.381 0.00 0.00 0.00 3.18
198 199 1.132453 TCTCACCGCTCTATGTCGTTG 59.868 52.381 0.00 0.00 0.00 4.10
199 200 1.460504 TCTCACCGCTCTATGTCGTT 58.539 50.000 0.00 0.00 0.00 3.85
200 201 1.681538 ATCTCACCGCTCTATGTCGT 58.318 50.000 0.00 0.00 0.00 4.34
201 202 2.548480 TGTATCTCACCGCTCTATGTCG 59.452 50.000 0.00 0.00 0.00 4.35
202 203 3.057876 CCTGTATCTCACCGCTCTATGTC 60.058 52.174 0.00 0.00 0.00 3.06
203 204 2.887783 CCTGTATCTCACCGCTCTATGT 59.112 50.000 0.00 0.00 0.00 2.29
204 205 2.887783 ACCTGTATCTCACCGCTCTATG 59.112 50.000 0.00 0.00 0.00 2.23
205 206 3.231207 ACCTGTATCTCACCGCTCTAT 57.769 47.619 0.00 0.00 0.00 1.98
206 207 2.688446 CAACCTGTATCTCACCGCTCTA 59.312 50.000 0.00 0.00 0.00 2.43
207 208 1.478510 CAACCTGTATCTCACCGCTCT 59.521 52.381 0.00 0.00 0.00 4.09
208 209 1.476891 TCAACCTGTATCTCACCGCTC 59.523 52.381 0.00 0.00 0.00 5.03
209 210 1.557099 TCAACCTGTATCTCACCGCT 58.443 50.000 0.00 0.00 0.00 5.52
210 211 2.101582 AGATCAACCTGTATCTCACCGC 59.898 50.000 0.00 0.00 0.00 5.68
211 212 4.822350 TCTAGATCAACCTGTATCTCACCG 59.178 45.833 0.00 0.00 34.36 4.94
212 213 5.242838 CCTCTAGATCAACCTGTATCTCACC 59.757 48.000 0.00 0.00 34.36 4.02
213 214 5.242838 CCCTCTAGATCAACCTGTATCTCAC 59.757 48.000 0.00 0.00 34.36 3.51
214 215 5.134509 TCCCTCTAGATCAACCTGTATCTCA 59.865 44.000 0.00 0.00 34.36 3.27
215 216 5.636123 TCCCTCTAGATCAACCTGTATCTC 58.364 45.833 0.00 0.00 34.36 2.75
216 217 5.458948 CCTCCCTCTAGATCAACCTGTATCT 60.459 48.000 0.00 0.00 36.45 1.98
217 218 4.770010 CCTCCCTCTAGATCAACCTGTATC 59.230 50.000 0.00 0.00 0.00 2.24
218 219 4.449968 CCCTCCCTCTAGATCAACCTGTAT 60.450 50.000 0.00 0.00 0.00 2.29
219 220 3.117093 CCCTCCCTCTAGATCAACCTGTA 60.117 52.174 0.00 0.00 0.00 2.74
220 221 2.359781 CCCTCCCTCTAGATCAACCTGT 60.360 54.545 0.00 0.00 0.00 4.00
221 222 2.324541 CCCTCCCTCTAGATCAACCTG 58.675 57.143 0.00 0.00 0.00 4.00
222 223 1.221781 CCCCTCCCTCTAGATCAACCT 59.778 57.143 0.00 0.00 0.00 3.50
223 224 1.723288 CCCCTCCCTCTAGATCAACC 58.277 60.000 0.00 0.00 0.00 3.77
224 225 1.723288 CCCCCTCCCTCTAGATCAAC 58.277 60.000 0.00 0.00 0.00 3.18
242 243 4.040198 AACCCCCTCCTCCTCCCC 62.040 72.222 0.00 0.00 0.00 4.81
243 244 2.190904 TACAACCCCCTCCTCCTCCC 62.191 65.000 0.00 0.00 0.00 4.30
244 245 0.691413 CTACAACCCCCTCCTCCTCC 60.691 65.000 0.00 0.00 0.00 4.30
245 246 1.338890 GCTACAACCCCCTCCTCCTC 61.339 65.000 0.00 0.00 0.00 3.71
246 247 1.307084 GCTACAACCCCCTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
247 248 1.205460 TTGCTACAACCCCCTCCTCC 61.205 60.000 0.00 0.00 0.00 4.30
248 249 0.696501 TTTGCTACAACCCCCTCCTC 59.303 55.000 0.00 0.00 0.00 3.71
249 250 0.404426 GTTTGCTACAACCCCCTCCT 59.596 55.000 0.00 0.00 0.00 3.69
250 251 0.111639 TGTTTGCTACAACCCCCTCC 59.888 55.000 0.00 0.00 32.64 4.30
251 252 1.989706 TTGTTTGCTACAACCCCCTC 58.010 50.000 1.54 0.00 41.73 4.30
258 259 0.814410 TCCGCCGTTGTTTGCTACAA 60.814 50.000 1.54 1.54 44.31 2.41
259 260 0.814410 TTCCGCCGTTGTTTGCTACA 60.814 50.000 0.00 0.00 34.12 2.74
260 261 0.385098 GTTCCGCCGTTGTTTGCTAC 60.385 55.000 0.00 0.00 0.00 3.58
261 262 0.814410 TGTTCCGCCGTTGTTTGCTA 60.814 50.000 0.00 0.00 0.00 3.49
262 263 1.658686 TTGTTCCGCCGTTGTTTGCT 61.659 50.000 0.00 0.00 0.00 3.91
263 264 1.226717 TTGTTCCGCCGTTGTTTGC 60.227 52.632 0.00 0.00 0.00 3.68
264 265 0.179161 TGTTGTTCCGCCGTTGTTTG 60.179 50.000 0.00 0.00 0.00 2.93
265 266 0.526662 TTGTTGTTCCGCCGTTGTTT 59.473 45.000 0.00 0.00 0.00 2.83
266 267 0.179158 GTTGTTGTTCCGCCGTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
267 268 1.306642 TGTTGTTGTTCCGCCGTTGT 61.307 50.000 0.00 0.00 0.00 3.32
268 269 0.030101 ATGTTGTTGTTCCGCCGTTG 59.970 50.000 0.00 0.00 0.00 4.10
269 270 0.741915 AATGTTGTTGTTCCGCCGTT 59.258 45.000 0.00 0.00 0.00 4.44
270 271 0.741915 AAATGTTGTTGTTCCGCCGT 59.258 45.000 0.00 0.00 0.00 5.68
271 272 1.127701 CAAATGTTGTTGTTCCGCCG 58.872 50.000 0.00 0.00 0.00 6.46
272 273 1.496934 CCAAATGTTGTTGTTCCGCC 58.503 50.000 0.00 0.00 0.00 6.13
273 274 0.858583 GCCAAATGTTGTTGTTCCGC 59.141 50.000 0.00 0.00 0.00 5.54
274 275 1.127701 CGCCAAATGTTGTTGTTCCG 58.872 50.000 0.00 0.00 0.00 4.30
275 276 1.496934 CCGCCAAATGTTGTTGTTCC 58.503 50.000 0.00 0.00 0.00 3.62
276 277 1.496934 CCCGCCAAATGTTGTTGTTC 58.503 50.000 0.00 0.00 0.00 3.18
277 278 0.531753 GCCCGCCAAATGTTGTTGTT 60.532 50.000 0.00 0.00 0.00 2.83
278 279 1.068921 GCCCGCCAAATGTTGTTGT 59.931 52.632 0.00 0.00 0.00 3.32
279 280 0.945265 CTGCCCGCCAAATGTTGTTG 60.945 55.000 0.00 0.00 0.00 3.33
280 281 1.367102 CTGCCCGCCAAATGTTGTT 59.633 52.632 0.00 0.00 0.00 2.83
281 282 2.573083 CCTGCCCGCCAAATGTTGT 61.573 57.895 0.00 0.00 0.00 3.32
282 283 2.262292 CCTGCCCGCCAAATGTTG 59.738 61.111 0.00 0.00 0.00 3.33
283 284 2.996734 CCCTGCCCGCCAAATGTT 60.997 61.111 0.00 0.00 0.00 2.71
300 301 3.487372 GAAGAGGTAATATGCAACCCCC 58.513 50.000 1.55 0.00 36.34 5.40
301 302 3.487372 GGAAGAGGTAATATGCAACCCC 58.513 50.000 1.55 0.00 36.34 4.95
302 303 3.139077 CGGAAGAGGTAATATGCAACCC 58.861 50.000 1.55 0.00 36.34 4.11
303 304 3.139077 CCGGAAGAGGTAATATGCAACC 58.861 50.000 0.00 0.00 35.91 3.77
304 305 2.548480 GCCGGAAGAGGTAATATGCAAC 59.452 50.000 5.05 0.00 0.00 4.17
305 306 2.486548 GGCCGGAAGAGGTAATATGCAA 60.487 50.000 5.05 0.00 0.00 4.08
306 307 1.071699 GGCCGGAAGAGGTAATATGCA 59.928 52.381 5.05 0.00 0.00 3.96
307 308 1.348036 AGGCCGGAAGAGGTAATATGC 59.652 52.381 5.05 0.00 0.00 3.14
308 309 3.071023 TGAAGGCCGGAAGAGGTAATATG 59.929 47.826 5.05 0.00 0.00 1.78
309 310 3.314693 TGAAGGCCGGAAGAGGTAATAT 58.685 45.455 5.05 0.00 0.00 1.28
310 311 2.754465 TGAAGGCCGGAAGAGGTAATA 58.246 47.619 5.05 0.00 0.00 0.98
311 312 1.580059 TGAAGGCCGGAAGAGGTAAT 58.420 50.000 5.05 0.00 0.00 1.89
312 313 1.354101 TTGAAGGCCGGAAGAGGTAA 58.646 50.000 5.05 0.00 0.00 2.85
313 314 1.354101 TTTGAAGGCCGGAAGAGGTA 58.646 50.000 5.05 0.00 0.00 3.08
314 315 0.698818 ATTTGAAGGCCGGAAGAGGT 59.301 50.000 5.05 0.00 0.00 3.85
315 316 2.710096 TATTTGAAGGCCGGAAGAGG 57.290 50.000 5.05 0.00 0.00 3.69
316 317 4.319177 CCTATATTTGAAGGCCGGAAGAG 58.681 47.826 5.05 0.00 0.00 2.85
317 318 4.351874 CCTATATTTGAAGGCCGGAAGA 57.648 45.455 5.05 0.00 0.00 2.87
325 326 4.803613 GCAAAAACCGCCTATATTTGAAGG 59.196 41.667 0.00 0.00 33.86 3.46
326 327 5.406649 TGCAAAAACCGCCTATATTTGAAG 58.593 37.500 0.00 0.00 33.86 3.02
327 328 5.392767 TGCAAAAACCGCCTATATTTGAA 57.607 34.783 0.00 0.00 33.86 2.69
328 329 4.676723 GCTGCAAAAACCGCCTATATTTGA 60.677 41.667 0.00 0.00 33.86 2.69
329 330 3.551485 GCTGCAAAAACCGCCTATATTTG 59.449 43.478 0.00 0.00 34.84 2.32
330 331 3.733684 CGCTGCAAAAACCGCCTATATTT 60.734 43.478 0.00 0.00 0.00 1.40
331 332 2.223479 CGCTGCAAAAACCGCCTATATT 60.223 45.455 0.00 0.00 0.00 1.28
332 333 1.333619 CGCTGCAAAAACCGCCTATAT 59.666 47.619 0.00 0.00 0.00 0.86
333 334 0.730265 CGCTGCAAAAACCGCCTATA 59.270 50.000 0.00 0.00 0.00 1.31
334 335 1.241315 ACGCTGCAAAAACCGCCTAT 61.241 50.000 0.00 0.00 0.00 2.57
335 336 1.894756 ACGCTGCAAAAACCGCCTA 60.895 52.632 0.00 0.00 0.00 3.93
336 337 3.216292 ACGCTGCAAAAACCGCCT 61.216 55.556 0.00 0.00 0.00 5.52
337 338 3.029735 CACGCTGCAAAAACCGCC 61.030 61.111 0.00 0.00 0.00 6.13
338 339 3.691356 GCACGCTGCAAAAACCGC 61.691 61.111 0.00 0.00 44.26 5.68
360 361 4.175516 TCCGTGCTCGTCGTAATATTTTT 58.824 39.130 7.47 0.00 35.01 1.94
361 362 3.772932 TCCGTGCTCGTCGTAATATTTT 58.227 40.909 7.47 0.00 35.01 1.82
362 363 3.425577 TCCGTGCTCGTCGTAATATTT 57.574 42.857 7.47 0.00 35.01 1.40
363 364 3.425577 TTCCGTGCTCGTCGTAATATT 57.574 42.857 7.47 0.00 35.01 1.28
364 365 3.637998 ATTCCGTGCTCGTCGTAATAT 57.362 42.857 7.47 0.00 35.01 1.28
365 366 3.607775 GCTATTCCGTGCTCGTCGTAATA 60.608 47.826 7.47 5.25 35.01 0.98
366 367 2.857489 GCTATTCCGTGCTCGTCGTAAT 60.857 50.000 7.47 4.43 35.01 1.89
367 368 1.532505 GCTATTCCGTGCTCGTCGTAA 60.533 52.381 7.47 0.00 35.01 3.18
368 369 0.028505 GCTATTCCGTGCTCGTCGTA 59.971 55.000 7.47 0.00 35.01 3.43
369 370 1.226603 GCTATTCCGTGCTCGTCGT 60.227 57.895 7.47 0.00 35.01 4.34
370 371 0.800683 TTGCTATTCCGTGCTCGTCG 60.801 55.000 7.47 0.00 35.01 5.12
371 372 1.355971 TTTGCTATTCCGTGCTCGTC 58.644 50.000 7.47 0.00 35.01 4.20
372 373 1.665679 CATTTGCTATTCCGTGCTCGT 59.334 47.619 7.47 0.00 35.01 4.18
373 374 1.665679 ACATTTGCTATTCCGTGCTCG 59.334 47.619 0.14 0.14 0.00 5.03
374 375 2.792542 GCACATTTGCTATTCCGTGCTC 60.793 50.000 0.00 0.00 46.17 4.26
375 376 1.133025 GCACATTTGCTATTCCGTGCT 59.867 47.619 0.00 0.00 46.17 4.40
376 377 1.548986 GCACATTTGCTATTCCGTGC 58.451 50.000 0.00 0.00 46.17 5.34
387 388 0.247185 AAATCGGCCCAGCACATTTG 59.753 50.000 0.00 0.00 0.00 2.32
388 389 1.846007 TAAATCGGCCCAGCACATTT 58.154 45.000 0.00 0.00 0.00 2.32
389 390 2.071778 ATAAATCGGCCCAGCACATT 57.928 45.000 0.00 0.00 0.00 2.71
390 391 2.071778 AATAAATCGGCCCAGCACAT 57.928 45.000 0.00 0.00 0.00 3.21
391 392 1.476085 CAAATAAATCGGCCCAGCACA 59.524 47.619 0.00 0.00 0.00 4.57
392 393 1.202405 CCAAATAAATCGGCCCAGCAC 60.202 52.381 0.00 0.00 0.00 4.40
393 394 1.110442 CCAAATAAATCGGCCCAGCA 58.890 50.000 0.00 0.00 0.00 4.41
394 395 1.398692 TCCAAATAAATCGGCCCAGC 58.601 50.000 0.00 0.00 0.00 4.85
395 396 3.287222 TCTTCCAAATAAATCGGCCCAG 58.713 45.455 0.00 0.00 0.00 4.45
396 397 3.374042 TCTTCCAAATAAATCGGCCCA 57.626 42.857 0.00 0.00 0.00 5.36
397 398 3.699538 ACTTCTTCCAAATAAATCGGCCC 59.300 43.478 0.00 0.00 0.00 5.80
398 399 4.398044 TCACTTCTTCCAAATAAATCGGCC 59.602 41.667 0.00 0.00 0.00 6.13
399 400 5.106317 TGTCACTTCTTCCAAATAAATCGGC 60.106 40.000 0.00 0.00 0.00 5.54
400 401 6.494893 TGTCACTTCTTCCAAATAAATCGG 57.505 37.500 0.00 0.00 0.00 4.18
401 402 7.148255 TGGATGTCACTTCTTCCAAATAAATCG 60.148 37.037 0.00 0.00 38.25 3.34
402 403 8.055279 TGGATGTCACTTCTTCCAAATAAATC 57.945 34.615 0.00 0.00 38.25 2.17
403 404 8.421249 TTGGATGTCACTTCTTCCAAATAAAT 57.579 30.769 10.23 0.00 43.61 1.40
404 405 7.831691 TTGGATGTCACTTCTTCCAAATAAA 57.168 32.000 10.23 0.00 43.61 1.40
405 406 7.831691 TTTGGATGTCACTTCTTCCAAATAA 57.168 32.000 16.94 3.01 46.64 1.40
409 410 5.139727 ACATTTGGATGTCACTTCTTCCAA 58.860 37.500 9.06 9.06 42.83 3.53
410 411 4.728772 ACATTTGGATGTCACTTCTTCCA 58.271 39.130 0.00 0.00 42.83 3.53
411 412 5.712152 AACATTTGGATGTCACTTCTTCC 57.288 39.130 0.00 0.00 45.58 3.46
412 413 9.696917 ATAAAAACATTTGGATGTCACTTCTTC 57.303 29.630 0.00 0.00 45.58 2.87
453 454 8.794553 GGAAAAAGAGTCCTCGTATATCTATCA 58.205 37.037 0.00 0.00 31.94 2.15
454 455 9.016438 AGGAAAAAGAGTCCTCGTATATCTATC 57.984 37.037 0.00 0.00 42.02 2.08
455 456 8.943594 AGGAAAAAGAGTCCTCGTATATCTAT 57.056 34.615 0.00 0.00 42.02 1.98
456 457 8.763984 AAGGAAAAAGAGTCCTCGTATATCTA 57.236 34.615 0.00 0.00 45.12 1.98
457 458 7.663043 AAGGAAAAAGAGTCCTCGTATATCT 57.337 36.000 0.00 0.00 45.12 1.98
458 459 9.247126 GTAAAGGAAAAAGAGTCCTCGTATATC 57.753 37.037 0.00 0.00 45.12 1.63
459 460 8.755977 TGTAAAGGAAAAAGAGTCCTCGTATAT 58.244 33.333 0.00 0.00 45.12 0.86
460 461 8.125978 TGTAAAGGAAAAAGAGTCCTCGTATA 57.874 34.615 0.00 0.00 45.12 1.47
461 462 7.001099 TGTAAAGGAAAAAGAGTCCTCGTAT 57.999 36.000 0.00 0.00 45.12 3.06
462 463 6.409524 TGTAAAGGAAAAAGAGTCCTCGTA 57.590 37.500 0.00 0.00 45.12 3.43
463 464 5.286267 TGTAAAGGAAAAAGAGTCCTCGT 57.714 39.130 0.00 0.00 45.12 4.18
464 465 4.152580 GCTGTAAAGGAAAAAGAGTCCTCG 59.847 45.833 0.00 0.00 45.12 4.63
465 466 5.309638 AGCTGTAAAGGAAAAAGAGTCCTC 58.690 41.667 0.00 0.00 45.12 3.71
467 468 6.392625 AAAGCTGTAAAGGAAAAAGAGTCC 57.607 37.500 0.00 0.00 35.17 3.85
468 469 7.973944 TGAAAAAGCTGTAAAGGAAAAAGAGTC 59.026 33.333 0.00 0.00 0.00 3.36
469 470 7.836842 TGAAAAAGCTGTAAAGGAAAAAGAGT 58.163 30.769 0.00 0.00 0.00 3.24
470 471 8.702163 TTGAAAAAGCTGTAAAGGAAAAAGAG 57.298 30.769 0.00 0.00 0.00 2.85
471 472 8.931775 GTTTGAAAAAGCTGTAAAGGAAAAAGA 58.068 29.630 0.00 0.00 0.00 2.52
472 473 8.716909 TGTTTGAAAAAGCTGTAAAGGAAAAAG 58.283 29.630 0.00 0.00 0.00 2.27
473 474 8.608844 TGTTTGAAAAAGCTGTAAAGGAAAAA 57.391 26.923 0.00 0.00 0.00 1.94
474 475 8.608844 TTGTTTGAAAAAGCTGTAAAGGAAAA 57.391 26.923 0.00 0.00 0.00 2.29
475 476 8.608844 TTTGTTTGAAAAAGCTGTAAAGGAAA 57.391 26.923 0.00 0.00 0.00 3.13
476 477 8.785329 ATTTGTTTGAAAAAGCTGTAAAGGAA 57.215 26.923 0.00 0.00 0.00 3.36
477 478 8.785329 AATTTGTTTGAAAAAGCTGTAAAGGA 57.215 26.923 0.00 0.00 0.00 3.36
478 479 9.838975 AAAATTTGTTTGAAAAAGCTGTAAAGG 57.161 25.926 0.00 0.00 0.00 3.11
511 512 3.633065 ACTTTAGCAGAGTCCTCGTATCC 59.367 47.826 0.00 0.00 34.09 2.59
513 514 3.181485 GCACTTTAGCAGAGTCCTCGTAT 60.181 47.826 0.00 0.00 34.09 3.06
548 549 2.484264 GCTGTTCACGAGGTTAGCAATT 59.516 45.455 0.00 0.00 0.00 2.32
554 555 1.290955 CCGGCTGTTCACGAGGTTA 59.709 57.895 0.00 0.00 0.00 2.85
557 558 4.379243 AGCCGGCTGTTCACGAGG 62.379 66.667 32.33 0.00 0.00 4.63
589 591 7.487829 GCGTGAGGCTATCAATTTTGATTTTTA 59.512 33.333 10.81 0.00 46.31 1.52
633 635 5.411977 CACAAAGGATCCTGATATGATCTGC 59.588 44.000 17.02 0.00 38.89 4.26
665 669 1.860950 CGATTGATTGTGGTAGCGAGG 59.139 52.381 0.00 0.00 0.00 4.63
727 731 2.862223 CGAGAAGCCGGATCTCCCC 61.862 68.421 24.01 7.98 40.16 4.81
731 735 2.128507 GGGTCGAGAAGCCGGATCT 61.129 63.158 5.05 7.99 35.40 2.75
732 736 2.417936 GGGTCGAGAAGCCGGATC 59.582 66.667 5.05 1.70 35.40 3.36
737 741 2.806237 CGGTAGGGTCGAGAAGCC 59.194 66.667 0.00 0.00 46.55 4.35
739 748 2.806237 GGCGGTAGGGTCGAGAAG 59.194 66.667 0.00 0.00 0.00 2.85
747 756 3.476031 ATGATTGGCGGCGGTAGGG 62.476 63.158 9.78 0.00 0.00 3.53
756 765 0.533755 GTGGAGGAGGATGATTGGCG 60.534 60.000 0.00 0.00 0.00 5.69
757 766 0.179006 GGTGGAGGAGGATGATTGGC 60.179 60.000 0.00 0.00 0.00 4.52
758 767 1.216064 TGGTGGAGGAGGATGATTGG 58.784 55.000 0.00 0.00 0.00 3.16
759 768 3.589951 AATGGTGGAGGAGGATGATTG 57.410 47.619 0.00 0.00 0.00 2.67
804 813 0.877743 GTTCTGAGTGCTTCCAAGGC 59.122 55.000 0.00 0.00 0.00 4.35
826 840 1.270465 GCAGCTGGTTTGATTGGCTTT 60.270 47.619 17.12 0.00 0.00 3.51
840 854 1.662044 GAAACCAACCCAGCAGCTG 59.338 57.895 16.23 16.23 0.00 4.24
865 879 2.484062 GCCATGTTGAGCGGGATGG 61.484 63.158 0.00 0.00 38.76 3.51
869 883 2.825836 GGAGCCATGTTGAGCGGG 60.826 66.667 0.00 0.00 0.00 6.13
886 900 1.140589 CTGCGTGCTCCTACCTGAG 59.859 63.158 0.00 0.00 35.40 3.35
894 908 1.218230 GATCGAATCCTGCGTGCTCC 61.218 60.000 0.00 0.00 0.00 4.70
896 910 1.227380 GGATCGAATCCTGCGTGCT 60.227 57.895 0.00 0.00 46.19 4.40
1036 1051 3.160748 GAGAGGCAGGAGCTCCCC 61.161 72.222 29.54 23.20 41.70 4.81
1176 1225 1.399727 GCAGTACATGGTTTGCGACAC 60.400 52.381 0.00 0.00 0.00 3.67
1241 1476 2.028420 TCTCTCGATGTGGCAATTGG 57.972 50.000 7.72 0.00 0.00 3.16
1274 1509 6.610075 AATCAAGAACAATGGCAGGTTAAT 57.390 33.333 7.24 0.00 0.00 1.40
1275 1510 7.147915 GGATAATCAAGAACAATGGCAGGTTAA 60.148 37.037 7.24 0.00 0.00 2.01
1276 1511 6.321181 GGATAATCAAGAACAATGGCAGGTTA 59.679 38.462 7.24 0.00 0.00 2.85
1280 1515 5.826737 AGAGGATAATCAAGAACAATGGCAG 59.173 40.000 0.00 0.00 0.00 4.85
1318 1553 6.126623 TGGTGGTGAGGAGCATAAATTGTATA 60.127 38.462 0.00 0.00 30.75 1.47
1362 1644 2.706190 GCCTTAGTCAGGTGGTATCCAT 59.294 50.000 0.00 0.00 46.07 3.41
1371 1653 3.857157 TTTCACTTGCCTTAGTCAGGT 57.143 42.857 0.00 0.00 46.07 4.00
1388 1670 7.394641 AGAGAACTGAAAACATTCCCCTATTTC 59.605 37.037 0.00 0.00 0.00 2.17
1392 1682 5.843019 AGAGAACTGAAAACATTCCCCTA 57.157 39.130 0.00 0.00 0.00 3.53
1394 1684 5.791336 AAAGAGAACTGAAAACATTCCCC 57.209 39.130 0.00 0.00 0.00 4.81
1434 1728 7.229506 TGGGCCGTTTTTGAAAATAATTCAAAT 59.770 29.630 14.85 0.00 44.72 2.32
1460 1757 9.739276 TGTTATGAAAAAGTGGATTCAGATACT 57.261 29.630 0.00 0.00 38.80 2.12
1718 2016 6.986817 ACTATCAGATTACATACACAAGGTGC 59.013 38.462 0.00 0.00 36.98 5.01
1758 2071 3.620821 GTCAAGATAGTCCTTCAGCAAGC 59.379 47.826 0.00 0.00 0.00 4.01
1771 2084 2.628178 TCCAGGGCGTATGTCAAGATAG 59.372 50.000 0.00 0.00 0.00 2.08
1777 2090 0.981183 ACTTTCCAGGGCGTATGTCA 59.019 50.000 0.00 0.00 0.00 3.58
1780 2093 1.094785 CCAACTTTCCAGGGCGTATG 58.905 55.000 0.00 0.00 0.00 2.39
1864 2177 2.399356 GCCGCCTTCCAAGCAGTAC 61.399 63.158 0.00 0.00 0.00 2.73
1944 2257 3.945434 CCGGCAGCACGATCATGC 61.945 66.667 5.43 5.43 46.50 4.06
1945 2258 3.945434 GCCGGCAGCACGATCATG 61.945 66.667 24.80 0.00 42.97 3.07
2026 2339 9.979270 CAGCTCTTTAGATGTAAAAACACATAG 57.021 33.333 0.00 0.00 39.25 2.23
2040 2353 4.277515 TCACTGCAACAGCTCTTTAGAT 57.722 40.909 0.00 0.00 34.37 1.98
2068 2384 9.577110 CATATTCATATGCAAAATGGGATACAC 57.423 33.333 11.31 0.00 34.37 2.90
2071 2388 9.758021 AGACATATTCATATGCAAAATGGGATA 57.242 29.630 11.31 10.30 42.98 2.59
2075 2392 9.752961 TTTCAGACATATTCATATGCAAAATGG 57.247 29.630 11.31 0.19 42.98 3.16
2087 2404 3.266772 ACAGGCCCTTTCAGACATATTCA 59.733 43.478 0.00 0.00 0.00 2.57
2088 2405 3.891049 ACAGGCCCTTTCAGACATATTC 58.109 45.455 0.00 0.00 0.00 1.75
2095 2412 2.306847 GACAAAACAGGCCCTTTCAGA 58.693 47.619 0.00 0.00 0.00 3.27
2096 2413 2.031120 TGACAAAACAGGCCCTTTCAG 58.969 47.619 0.00 0.00 0.00 3.02
2098 2415 2.483013 GGTTGACAAAACAGGCCCTTTC 60.483 50.000 0.00 0.00 0.00 2.62
2099 2416 1.484653 GGTTGACAAAACAGGCCCTTT 59.515 47.619 0.00 0.00 0.00 3.11
2100 2417 1.119684 GGTTGACAAAACAGGCCCTT 58.880 50.000 0.00 0.00 0.00 3.95
2101 2418 0.032615 TGGTTGACAAAACAGGCCCT 60.033 50.000 0.00 0.00 0.00 5.19
2102 2419 0.827368 TTGGTTGACAAAACAGGCCC 59.173 50.000 0.00 0.00 33.58 5.80
2103 2420 2.223537 CTTGGTTGACAAAACAGGCC 57.776 50.000 0.00 0.00 38.91 5.19
2105 2422 2.426738 TGAGCTTGGTTGACAAAACAGG 59.573 45.455 0.00 0.00 38.91 4.00
2143 2460 5.116084 TGCCCTCAATATCTTTTAGTGCT 57.884 39.130 0.00 0.00 0.00 4.40
2150 2467 6.753913 TCTACAGATGCCCTCAATATCTTT 57.246 37.500 0.00 0.00 0.00 2.52
2152 2469 5.012561 GGTTCTACAGATGCCCTCAATATCT 59.987 44.000 0.00 0.00 0.00 1.98
2153 2470 5.221722 TGGTTCTACAGATGCCCTCAATATC 60.222 44.000 0.00 0.00 0.00 1.63
2155 2472 4.037222 TGGTTCTACAGATGCCCTCAATA 58.963 43.478 0.00 0.00 0.00 1.90
2156 2473 2.846206 TGGTTCTACAGATGCCCTCAAT 59.154 45.455 0.00 0.00 0.00 2.57
2157 2474 2.027192 GTGGTTCTACAGATGCCCTCAA 60.027 50.000 0.00 0.00 0.00 3.02
2158 2475 1.555075 GTGGTTCTACAGATGCCCTCA 59.445 52.381 0.00 0.00 0.00 3.86
2163 2480 4.846779 TTTTTGGTGGTTCTACAGATGC 57.153 40.909 0.00 0.00 0.00 3.91
2211 2528 6.974622 AGTTGTCAAACATCTTGTTGATCAAC 59.025 34.615 28.10 28.10 40.14 3.18
2227 2544 8.289618 GCATTACATGAAGAACTAGTTGTCAAA 58.710 33.333 14.14 8.10 0.00 2.69
2238 2555 6.371548 TCACCAAGTAGCATTACATGAAGAAC 59.628 38.462 0.00 0.00 31.75 3.01
2337 2853 1.536072 GCACGACGAGGCATCAGAATA 60.536 52.381 0.00 0.00 0.00 1.75
2456 2974 2.047655 GACCGGCATTGTCGTCCA 60.048 61.111 10.10 0.00 0.00 4.02
2636 3162 6.537355 AGTTTGATATGGCAGTATAGCACAT 58.463 36.000 0.00 0.00 35.83 3.21
2659 3944 3.744660 ACTGGGTTTAAGCACTTGAGAG 58.255 45.455 0.00 0.00 0.00 3.20
2666 3951 6.918892 AAAATCAAAACTGGGTTTAAGCAC 57.081 33.333 0.00 0.00 34.43 4.40
2742 4027 6.710278 TCATAGATTGATGTGTGGACTGAAA 58.290 36.000 0.00 0.00 0.00 2.69
2747 4032 7.601886 CCTAAGATCATAGATTGATGTGTGGAC 59.398 40.741 6.55 0.00 45.29 4.02
2812 4097 7.972832 GGAGAATGAAGATTTGACCAAGAATTC 59.027 37.037 0.00 0.00 0.00 2.17
2832 4117 4.411013 CCAAAGGAAAAGGAGTGGAGAAT 58.589 43.478 0.00 0.00 0.00 2.40
2834 4119 2.489073 GCCAAAGGAAAAGGAGTGGAGA 60.489 50.000 0.00 0.00 0.00 3.71
2835 4120 1.889170 GCCAAAGGAAAAGGAGTGGAG 59.111 52.381 0.00 0.00 0.00 3.86
2851 4136 2.288666 GCGATATGTTTCCTCAGCCAA 58.711 47.619 0.00 0.00 0.00 4.52
2853 4138 1.230324 GGCGATATGTTTCCTCAGCC 58.770 55.000 0.00 0.00 36.32 4.85
2854 4139 1.953559 TGGCGATATGTTTCCTCAGC 58.046 50.000 0.00 0.00 0.00 4.26
2855 4140 3.270027 TGTTGGCGATATGTTTCCTCAG 58.730 45.455 0.00 0.00 0.00 3.35
2859 4150 6.092259 GGAGTATATGTTGGCGATATGTTTCC 59.908 42.308 0.00 0.00 0.00 3.13
2861 4152 6.769512 AGGAGTATATGTTGGCGATATGTTT 58.230 36.000 0.00 0.00 0.00 2.83
2862 4153 6.360370 AGGAGTATATGTTGGCGATATGTT 57.640 37.500 0.00 0.00 0.00 2.71
2878 4175 7.010339 GGAACCAGAAAGCATATAGGAGTAT 57.990 40.000 0.00 0.00 0.00 2.12
2880 4177 5.297569 GGAACCAGAAAGCATATAGGAGT 57.702 43.478 0.00 0.00 0.00 3.85
3051 4461 6.096846 ACTTAACTTTTGCACTGTCAGGAAAT 59.903 34.615 4.53 0.00 0.00 2.17
3056 4466 6.017109 ACCATACTTAACTTTTGCACTGTCAG 60.017 38.462 0.00 0.00 0.00 3.51
3120 4538 1.971357 TCCCTCCTGACACTTGAGTTC 59.029 52.381 0.00 0.00 0.00 3.01
3129 4547 1.144913 CCTGGTTTTTCCCTCCTGACA 59.855 52.381 0.00 0.00 34.77 3.58
3130 4548 1.145119 ACCTGGTTTTTCCCTCCTGAC 59.855 52.381 0.00 0.00 34.77 3.51
3236 4654 2.093764 GTGGAAGGATGAGTGACCTCTG 60.094 54.545 0.00 0.00 38.61 3.35
3244 4662 5.456921 ACAATTATGGTGGAAGGATGAGT 57.543 39.130 0.00 0.00 0.00 3.41
3248 4666 6.655078 GCATAACAATTATGGTGGAAGGAT 57.345 37.500 9.90 0.00 42.53 3.24
3297 4715 4.835891 AGTACGGGGGAGCTCGGG 62.836 72.222 7.83 0.00 0.00 5.14
3298 4716 2.758737 AAGTACGGGGGAGCTCGG 60.759 66.667 7.83 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.