Multiple sequence alignment - TraesCS1B01G395800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G395800 chr1B 100.000 2429 0 0 1 2429 627840325 627842753 0.000000e+00 4486
1 TraesCS1B01G395800 chr1B 98.509 872 11 1 5 876 627832280 627833149 0.000000e+00 1537
2 TraesCS1B01G395800 chr1B 97.480 873 20 1 4 876 554348773 554349643 0.000000e+00 1489
3 TraesCS1B01G395800 chr1B 84.883 1065 93 35 877 1894 17884870 17883827 0.000000e+00 1013
4 TraesCS1B01G395800 chr1B 84.166 1061 101 39 871 1894 639428228 639429258 0.000000e+00 966
5 TraesCS1B01G395800 chr7A 88.759 1450 90 39 877 2291 692317523 692316112 0.000000e+00 1707
6 TraesCS1B01G395800 chr7A 98.174 876 13 2 1 876 451432492 451433364 0.000000e+00 1526
7 TraesCS1B01G395800 chr7A 97.595 873 19 1 4 876 387415132 387414262 0.000000e+00 1495
8 TraesCS1B01G395800 chr7A 97.436 78 2 0 2352 2429 692316095 692316018 1.520000e-27 134
9 TraesCS1B01G395800 chr4A 98.163 871 14 1 4 874 152748080 152747212 0.000000e+00 1519
10 TraesCS1B01G395800 chr4A 97.595 873 17 3 4 876 533646121 533645253 0.000000e+00 1493
11 TraesCS1B01G395800 chr2B 97.494 878 18 3 1 877 674328023 674328897 0.000000e+00 1496
12 TraesCS1B01G395800 chr2B 97.491 877 18 3 1 876 674319979 674320852 0.000000e+00 1495
13 TraesCS1B01G395800 chr6B 97.491 877 18 3 1 876 483295604 483296477 0.000000e+00 1495
14 TraesCS1B01G395800 chr1D 91.627 633 39 9 871 1503 5448766 5449384 0.000000e+00 863
15 TraesCS1B01G395800 chr1D 84.396 737 57 28 1575 2281 5449476 5450184 0.000000e+00 671


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G395800 chr1B 627840325 627842753 2428 False 4486.0 4486 100.0000 1 2429 1 chr1B.!!$F3 2428
1 TraesCS1B01G395800 chr1B 627832280 627833149 869 False 1537.0 1537 98.5090 5 876 1 chr1B.!!$F2 871
2 TraesCS1B01G395800 chr1B 554348773 554349643 870 False 1489.0 1489 97.4800 4 876 1 chr1B.!!$F1 872
3 TraesCS1B01G395800 chr1B 17883827 17884870 1043 True 1013.0 1013 84.8830 877 1894 1 chr1B.!!$R1 1017
4 TraesCS1B01G395800 chr1B 639428228 639429258 1030 False 966.0 966 84.1660 871 1894 1 chr1B.!!$F4 1023
5 TraesCS1B01G395800 chr7A 451432492 451433364 872 False 1526.0 1526 98.1740 1 876 1 chr7A.!!$F1 875
6 TraesCS1B01G395800 chr7A 387414262 387415132 870 True 1495.0 1495 97.5950 4 876 1 chr7A.!!$R1 872
7 TraesCS1B01G395800 chr7A 692316018 692317523 1505 True 920.5 1707 93.0975 877 2429 2 chr7A.!!$R2 1552
8 TraesCS1B01G395800 chr4A 152747212 152748080 868 True 1519.0 1519 98.1630 4 874 1 chr4A.!!$R1 870
9 TraesCS1B01G395800 chr4A 533645253 533646121 868 True 1493.0 1493 97.5950 4 876 1 chr4A.!!$R2 872
10 TraesCS1B01G395800 chr2B 674328023 674328897 874 False 1496.0 1496 97.4940 1 877 1 chr2B.!!$F2 876
11 TraesCS1B01G395800 chr2B 674319979 674320852 873 False 1495.0 1495 97.4910 1 876 1 chr2B.!!$F1 875
12 TraesCS1B01G395800 chr6B 483295604 483296477 873 False 1495.0 1495 97.4910 1 876 1 chr6B.!!$F1 875
13 TraesCS1B01G395800 chr1D 5448766 5450184 1418 False 767.0 863 88.0115 871 2281 2 chr1D.!!$F1 1410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 951 0.108585 AATGATGCGGCGGTTCCTAT 59.891 50.0 9.78 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2433 0.108585 AACTGGATTGGACACGCACT 59.891 50.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
234 236 2.336667 GTAATCGGACGGACGGAAAAA 58.663 47.619 0.00 0.00 0.00 1.94
483 487 5.178067 GCAACGGTACCGCTATACATTTAAT 59.822 40.000 33.62 6.81 44.19 1.40
752 759 2.363359 TGCTGTGAGACGAGATGCATAT 59.637 45.455 0.00 0.00 0.00 1.78
753 760 3.569701 TGCTGTGAGACGAGATGCATATA 59.430 43.478 0.00 0.00 0.00 0.86
761 768 7.383572 GTGAGACGAGATGCATATAACAAGAAT 59.616 37.037 0.00 0.00 0.00 2.40
793 800 2.094442 ACAACAGACAAAAACCCAACCG 60.094 45.455 0.00 0.00 0.00 4.44
924 934 2.429610 GGGCACTGATGATCAAGCAAAT 59.570 45.455 17.58 0.00 31.53 2.32
941 951 0.108585 AATGATGCGGCGGTTCCTAT 59.891 50.000 9.78 0.00 0.00 2.57
942 952 0.603707 ATGATGCGGCGGTTCCTATG 60.604 55.000 9.78 0.00 0.00 2.23
1212 1222 2.434774 GTCTCCAACCCCACCCAC 59.565 66.667 0.00 0.00 0.00 4.61
1310 1320 2.374525 CGGTGGACCATCCCCATGA 61.375 63.158 0.00 0.00 35.03 3.07
1407 1417 1.739049 CGTGCCCAAGAAGCCAAAA 59.261 52.632 0.00 0.00 0.00 2.44
1453 1463 1.554617 TGATCTTCATGGAAGCCGTCA 59.445 47.619 1.14 3.60 39.29 4.35
1469 1479 1.601759 TCAGTTGCTGCTCCAAGGC 60.602 57.895 0.00 0.00 0.00 4.35
1477 1488 0.326264 CTGCTCCAAGGCAAGGTAGT 59.674 55.000 0.00 0.00 41.94 2.73
1479 1490 1.555075 TGCTCCAAGGCAAGGTAGTAG 59.445 52.381 0.00 0.00 39.43 2.57
1503 1514 2.374504 AGGATCTTGATGTGGCTATGGG 59.625 50.000 0.00 0.00 0.00 4.00
1520 1531 1.001974 TGGGTCGATCACAAAGGACTG 59.998 52.381 0.00 0.00 0.00 3.51
1598 1643 2.224843 ACAGATGATGTTTGGACCTGCA 60.225 45.455 0.00 0.00 39.96 4.41
1611 1659 2.045708 CCTGCATGCGCCCAGTTTA 61.046 57.895 14.09 0.00 37.32 2.01
1615 1663 1.586154 GCATGCGCCCAGTTTACTGT 61.586 55.000 4.18 0.00 42.27 3.55
1619 1667 3.613494 TGCGCCCAGTTTACTGTATTA 57.387 42.857 4.18 0.00 42.27 0.98
1624 1672 5.416947 CGCCCAGTTTACTGTATTACTTCT 58.583 41.667 8.91 0.00 42.27 2.85
1633 1681 9.556030 GTTTACTGTATTACTTCTTGGCATTTC 57.444 33.333 0.00 0.00 0.00 2.17
1634 1682 9.515226 TTTACTGTATTACTTCTTGGCATTTCT 57.485 29.630 0.00 0.00 0.00 2.52
1635 1683 7.617041 ACTGTATTACTTCTTGGCATTTCTC 57.383 36.000 0.00 0.00 0.00 2.87
1640 1688 4.796038 ACTTCTTGGCATTTCTCCATTG 57.204 40.909 0.00 0.00 32.92 2.82
1645 1693 5.969423 TCTTGGCATTTCTCCATTGATTTC 58.031 37.500 0.00 0.00 32.92 2.17
1653 1701 5.818136 TTCTCCATTGATTTCTTTAGGCG 57.182 39.130 0.00 0.00 0.00 5.52
1723 1776 4.091549 AGGGAACAAAATGATGATGTGCT 58.908 39.130 0.00 0.00 0.00 4.40
1745 1806 9.278734 GTGCTTATATTTAGTTCAAGTTTCTGC 57.721 33.333 0.00 0.00 0.00 4.26
1753 1814 2.549064 TCAAGTTTCTGCAGCTGCTA 57.451 45.000 36.61 23.26 42.66 3.49
1758 1819 2.086869 GTTTCTGCAGCTGCTATTCCA 58.913 47.619 36.61 16.65 42.66 3.53
1763 1824 2.484651 CTGCAGCTGCTATTCCATCATC 59.515 50.000 36.61 6.22 42.66 2.92
1802 1864 8.903820 TGTGACGAGCTGCATATATATATAGTT 58.096 33.333 4.90 0.00 0.00 2.24
1803 1865 9.737427 GTGACGAGCTGCATATATATATAGTTT 57.263 33.333 4.90 0.00 0.00 2.66
1851 1931 7.722949 ATTTCTGTTGGTGTAAATCCATCAT 57.277 32.000 0.00 0.00 35.17 2.45
1852 1932 6.757897 TTCTGTTGGTGTAAATCCATCATC 57.242 37.500 0.00 0.00 35.17 2.92
1884 1968 6.710597 AGCTAGCATGATTGATTGATTTGT 57.289 33.333 18.83 0.00 0.00 2.83
1970 2054 4.212214 GTCAGTATATTACCTTGCAGCAGC 59.788 45.833 0.00 0.00 42.57 5.25
2010 2094 5.726980 TTGCAGAATTATGGCAGAGTTTT 57.273 34.783 1.67 0.00 38.97 2.43
2020 2104 4.093472 TGGCAGAGTTTTAACTTGGCTA 57.907 40.909 20.48 13.04 39.88 3.93
2021 2105 4.072131 TGGCAGAGTTTTAACTTGGCTAG 58.928 43.478 20.48 0.00 39.88 3.42
2022 2106 3.119814 GGCAGAGTTTTAACTTGGCTAGC 60.120 47.826 6.04 6.04 39.88 3.42
2023 2107 3.753797 GCAGAGTTTTAACTTGGCTAGCT 59.246 43.478 15.72 0.00 39.88 3.32
2024 2108 4.378874 GCAGAGTTTTAACTTGGCTAGCTG 60.379 45.833 15.72 7.95 39.88 4.24
2029 2113 3.915437 TTAACTTGGCTAGCTGTTTGC 57.085 42.857 15.72 0.00 43.29 3.68
2067 2151 5.607206 CGCGCAAATTTTACATGATTTGTT 58.393 33.333 8.75 0.00 42.42 2.83
2105 2189 5.473162 TGCTGCTGAAATTTGCTTTCTAGTA 59.527 36.000 0.00 0.00 43.14 1.82
2106 2190 6.026513 GCTGCTGAAATTTGCTTTCTAGTAG 58.973 40.000 0.00 0.00 43.14 2.57
2107 2191 6.348868 GCTGCTGAAATTTGCTTTCTAGTAGT 60.349 38.462 0.00 0.00 43.14 2.73
2126 2210 2.104792 AGTTTCTGTAGCTGCTGTTCCA 59.895 45.455 13.43 2.89 0.00 3.53
2145 2229 4.338012 TCCATCTTCAGAAACATGCATGT 58.662 39.130 26.61 26.61 44.20 3.21
2160 2244 3.270027 TGCATGTGTTGAGCTACATACC 58.730 45.455 0.00 0.00 35.86 2.73
2196 2280 7.819900 GGTTTATTGAGTGTATCTGTCTGAAGT 59.180 37.037 0.00 0.00 0.00 3.01
2203 2287 7.039434 TGAGTGTATCTGTCTGAAGTTGATTCT 60.039 37.037 0.00 0.00 38.83 2.40
2210 2294 7.448420 TCTGTCTGAAGTTGATTCTGATCTTT 58.552 34.615 0.00 0.00 44.61 2.52
2270 2363 7.944729 AGTTATCATGATTAACTTGCCACTT 57.055 32.000 14.65 0.00 30.66 3.16
2271 2364 7.989826 AGTTATCATGATTAACTTGCCACTTC 58.010 34.615 14.65 0.00 30.66 3.01
2281 2374 5.700402 AACTTGCCACTTCTATGTCCTAT 57.300 39.130 0.00 0.00 0.00 2.57
2282 2375 6.808321 AACTTGCCACTTCTATGTCCTATA 57.192 37.500 0.00 0.00 0.00 1.31
2283 2376 6.412362 ACTTGCCACTTCTATGTCCTATAG 57.588 41.667 0.00 0.00 0.00 1.31
2284 2377 6.136857 ACTTGCCACTTCTATGTCCTATAGA 58.863 40.000 0.00 0.00 0.00 1.98
2285 2378 6.784969 ACTTGCCACTTCTATGTCCTATAGAT 59.215 38.462 0.00 0.00 31.45 1.98
2286 2379 7.950684 ACTTGCCACTTCTATGTCCTATAGATA 59.049 37.037 0.00 0.00 31.45 1.98
2287 2380 7.704578 TGCCACTTCTATGTCCTATAGATAC 57.295 40.000 0.00 0.00 31.45 2.24
2288 2381 7.238710 TGCCACTTCTATGTCCTATAGATACA 58.761 38.462 0.00 5.87 31.45 2.29
2289 2382 7.728532 TGCCACTTCTATGTCCTATAGATACAA 59.271 37.037 0.00 0.00 31.45 2.41
2290 2383 8.754080 GCCACTTCTATGTCCTATAGATACAAT 58.246 37.037 0.00 0.00 31.45 2.71
2314 2407 5.766670 TCATACAATGCCTCTGGAATGAATC 59.233 40.000 0.00 0.00 0.00 2.52
2329 2422 7.016153 GGAATGAATCCTGGTGGTATATACA 57.984 40.000 14.70 0.00 45.56 2.29
2330 2423 6.879458 GGAATGAATCCTGGTGGTATATACAC 59.121 42.308 14.70 10.19 45.56 2.90
2339 2432 3.313012 TGGTATATACACCATCGCAGC 57.687 47.619 14.70 0.00 43.76 5.25
2340 2433 2.630580 TGGTATATACACCATCGCAGCA 59.369 45.455 14.70 0.00 43.76 4.41
2341 2434 3.254060 GGTATATACACCATCGCAGCAG 58.746 50.000 14.70 0.00 38.55 4.24
2342 2435 3.306088 GGTATATACACCATCGCAGCAGT 60.306 47.826 14.70 0.00 38.55 4.40
2343 2436 2.223537 TATACACCATCGCAGCAGTG 57.776 50.000 0.00 0.00 36.30 3.66
2378 2471 5.382303 CAGTTTTGCACTAATAACTGACGG 58.618 41.667 14.68 0.00 46.43 4.79
2414 2507 3.577805 ATCCTGGTGGTATTTACTGGC 57.422 47.619 0.00 0.00 34.23 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
234 236 6.697641 TGTTGGTTTCTCCCTAGTCTATTT 57.302 37.500 0.00 0.00 34.77 1.40
282 286 2.446666 TGGATCCGAATCATCCCCAAAT 59.553 45.455 7.39 0.00 39.43 2.32
314 318 2.036098 TGAACCCGACCCGCTCTA 59.964 61.111 0.00 0.00 0.00 2.43
483 487 1.490490 GTCCATCTGATAGCCCAACCA 59.510 52.381 0.00 0.00 0.00 3.67
753 760 9.921637 TCTGTTGTTTTGTCTTTTATTCTTGTT 57.078 25.926 0.00 0.00 0.00 2.83
761 768 8.766151 GGTTTTTGTCTGTTGTTTTGTCTTTTA 58.234 29.630 0.00 0.00 0.00 1.52
767 774 4.962155 TGGGTTTTTGTCTGTTGTTTTGT 58.038 34.783 0.00 0.00 0.00 2.83
793 800 7.361286 GGAGATGTGATTTATTATTTCCTCCGC 60.361 40.741 0.00 0.00 0.00 5.54
924 934 1.227527 CATAGGAACCGCCGCATCA 60.228 57.895 0.00 0.00 43.43 3.07
1383 1393 4.323477 TTCTTGGGCACGGTCCGG 62.323 66.667 17.28 5.79 0.00 5.14
1407 1417 0.687354 AATCACGGGACAACTGAGCT 59.313 50.000 0.00 0.00 0.00 4.09
1414 1424 3.949132 TCATCAATCAATCACGGGACAA 58.051 40.909 0.00 0.00 0.00 3.18
1453 1463 1.152694 TTGCCTTGGAGCAGCAACT 60.153 52.632 0.00 0.00 45.13 3.16
1469 1479 3.706594 TCAAGATCCTGCCTACTACCTTG 59.293 47.826 0.00 0.00 33.20 3.61
1477 1488 1.141657 GCCACATCAAGATCCTGCCTA 59.858 52.381 0.00 0.00 0.00 3.93
1479 1490 0.106819 AGCCACATCAAGATCCTGCC 60.107 55.000 0.00 0.00 0.00 4.85
1546 1560 2.111756 CAGCAGAAACTGTTCGCAAAC 58.888 47.619 10.78 0.00 38.90 2.93
1581 1626 1.479323 GCATGCAGGTCCAAACATCAT 59.521 47.619 14.21 0.00 0.00 2.45
1611 1659 6.599638 GGAGAAATGCCAAGAAGTAATACAGT 59.400 38.462 0.00 0.00 0.00 3.55
1615 1663 7.833682 TCAATGGAGAAATGCCAAGAAGTAATA 59.166 33.333 0.00 0.00 39.21 0.98
1619 1667 4.410099 TCAATGGAGAAATGCCAAGAAGT 58.590 39.130 0.00 0.00 39.21 3.01
1624 1672 6.363167 AAGAAATCAATGGAGAAATGCCAA 57.637 33.333 0.00 0.00 39.21 4.52
1633 1681 4.396166 ACACGCCTAAAGAAATCAATGGAG 59.604 41.667 0.00 0.00 0.00 3.86
1634 1682 4.331968 ACACGCCTAAAGAAATCAATGGA 58.668 39.130 0.00 0.00 0.00 3.41
1635 1683 4.701956 ACACGCCTAAAGAAATCAATGG 57.298 40.909 0.00 0.00 0.00 3.16
1640 1688 5.625311 CACAAGAAACACGCCTAAAGAAATC 59.375 40.000 0.00 0.00 0.00 2.17
1645 1693 4.749245 ATCACAAGAAACACGCCTAAAG 57.251 40.909 0.00 0.00 0.00 1.85
1653 1701 8.524870 AGCAAATTATCAATCACAAGAAACAC 57.475 30.769 0.00 0.00 0.00 3.32
1723 1776 9.231297 AGCTGCAGAAACTTGAACTAAATATAA 57.769 29.630 20.43 0.00 0.00 0.98
1736 1797 2.751806 GGAATAGCAGCTGCAGAAACTT 59.248 45.455 38.24 21.10 45.16 2.66
1745 1806 5.509716 TTTTGATGATGGAATAGCAGCTG 57.490 39.130 10.11 10.11 31.16 4.24
1753 1814 5.092554 TGCATGCTTTTTGATGATGGAAT 57.907 34.783 20.33 0.00 0.00 3.01
1758 1819 4.868171 GTCACATGCATGCTTTTTGATGAT 59.132 37.500 26.53 0.00 0.00 2.45
1763 1824 2.659757 CTCGTCACATGCATGCTTTTTG 59.340 45.455 26.53 16.33 0.00 2.44
1808 1870 9.950496 ACAGAAATTACACTTATCTGAATCACT 57.050 29.630 7.98 0.00 39.85 3.41
1820 1900 8.357402 GGATTTACACCAACAGAAATTACACTT 58.643 33.333 0.00 0.00 0.00 3.16
1852 1932 5.886992 TCAATCATGCTAGCTTTCAACATG 58.113 37.500 17.23 9.32 39.53 3.21
1895 1979 4.901250 TCCAGAGGCATTGTAGTATCATCA 59.099 41.667 0.00 0.00 0.00 3.07
1970 2054 1.157870 AAAACTGGACTGGACACGCG 61.158 55.000 3.53 3.53 0.00 6.01
2041 2125 2.249337 TCATGTAAAATTTGCGCGCTG 58.751 42.857 33.29 17.63 0.00 5.18
2044 2128 5.188997 ACAAATCATGTAAAATTTGCGCG 57.811 34.783 14.34 0.00 43.47 6.86
2047 2131 9.532697 CAGCTAAACAAATCATGTAAAATTTGC 57.467 29.630 14.34 7.47 43.47 3.68
2090 2174 8.722394 GCTACAGAAACTACTAGAAAGCAAATT 58.278 33.333 0.00 0.00 0.00 1.82
2105 2189 2.104792 TGGAACAGCAGCTACAGAAACT 59.895 45.455 0.00 0.00 0.00 2.66
2106 2190 2.494059 TGGAACAGCAGCTACAGAAAC 58.506 47.619 0.00 0.00 0.00 2.78
2107 2191 2.928801 TGGAACAGCAGCTACAGAAA 57.071 45.000 0.00 0.00 0.00 2.52
2126 2210 5.242171 TCAACACATGCATGTTTCTGAAGAT 59.758 36.000 29.48 8.68 40.89 2.40
2168 2252 7.851228 TCAGACAGATACACTCAATAAACCAT 58.149 34.615 0.00 0.00 0.00 3.55
2169 2253 7.239763 TCAGACAGATACACTCAATAAACCA 57.760 36.000 0.00 0.00 0.00 3.67
2178 2262 7.275341 CAGAATCAACTTCAGACAGATACACTC 59.725 40.741 0.00 0.00 36.24 3.51
2188 2272 7.041508 ACACAAAGATCAGAATCAACTTCAGAC 60.042 37.037 0.00 0.00 32.85 3.51
2196 2280 4.401022 AGGCACACAAAGATCAGAATCAA 58.599 39.130 0.00 0.00 34.07 2.57
2203 2287 4.887071 ACTAACAAAGGCACACAAAGATCA 59.113 37.500 0.00 0.00 0.00 2.92
2210 2294 4.409718 TCTACACTAACAAAGGCACACA 57.590 40.909 0.00 0.00 0.00 3.72
2281 2374 7.235399 TCCAGAGGCATTGTATGATTGTATCTA 59.765 37.037 0.00 0.00 0.00 1.98
2282 2375 6.043590 TCCAGAGGCATTGTATGATTGTATCT 59.956 38.462 0.00 0.00 0.00 1.98
2283 2376 6.233434 TCCAGAGGCATTGTATGATTGTATC 58.767 40.000 0.00 0.00 0.00 2.24
2284 2377 6.191657 TCCAGAGGCATTGTATGATTGTAT 57.808 37.500 0.00 0.00 0.00 2.29
2285 2378 5.628797 TCCAGAGGCATTGTATGATTGTA 57.371 39.130 0.00 0.00 0.00 2.41
2286 2379 4.508551 TCCAGAGGCATTGTATGATTGT 57.491 40.909 0.00 0.00 0.00 2.71
2287 2380 5.533528 TCATTCCAGAGGCATTGTATGATTG 59.466 40.000 0.00 0.00 0.00 2.67
2288 2381 5.698104 TCATTCCAGAGGCATTGTATGATT 58.302 37.500 0.00 0.00 0.00 2.57
2289 2382 5.314718 TCATTCCAGAGGCATTGTATGAT 57.685 39.130 0.00 0.00 0.00 2.45
2290 2383 4.776435 TCATTCCAGAGGCATTGTATGA 57.224 40.909 0.00 0.00 0.00 2.15
2291 2384 5.048224 GGATTCATTCCAGAGGCATTGTATG 60.048 44.000 0.00 0.00 44.74 2.39
2292 2385 5.075493 GGATTCATTCCAGAGGCATTGTAT 58.925 41.667 0.00 0.00 44.74 2.29
2293 2386 4.464008 GGATTCATTCCAGAGGCATTGTA 58.536 43.478 0.00 0.00 44.74 2.41
2294 2387 3.294214 GGATTCATTCCAGAGGCATTGT 58.706 45.455 0.00 0.00 44.74 2.71
2320 2413 3.254060 CTGCTGCGATGGTGTATATACC 58.746 50.000 11.56 11.56 41.24 2.73
2321 2414 3.675225 CACTGCTGCGATGGTGTATATAC 59.325 47.826 5.89 5.89 0.00 1.47
2322 2415 3.860754 GCACTGCTGCGATGGTGTATATA 60.861 47.826 13.25 0.00 32.44 0.86
2323 2416 2.759191 CACTGCTGCGATGGTGTATAT 58.241 47.619 0.00 0.00 0.00 0.86
2324 2417 1.806247 GCACTGCTGCGATGGTGTATA 60.806 52.381 13.25 0.00 32.44 1.47
2325 2418 1.091771 GCACTGCTGCGATGGTGTAT 61.092 55.000 13.25 0.00 32.44 2.29
2326 2419 1.741401 GCACTGCTGCGATGGTGTA 60.741 57.895 13.25 0.00 32.44 2.90
2327 2420 3.052082 GCACTGCTGCGATGGTGT 61.052 61.111 13.25 0.00 32.44 4.16
2335 2428 2.518836 GATTGGACACGCACTGCTGC 62.519 60.000 0.00 0.00 40.38 5.25
2336 2429 1.499056 GATTGGACACGCACTGCTG 59.501 57.895 0.00 0.00 0.00 4.41
2337 2430 1.672356 GGATTGGACACGCACTGCT 60.672 57.895 0.00 0.00 0.00 4.24
2338 2431 1.915614 CTGGATTGGACACGCACTGC 61.916 60.000 0.00 0.00 0.00 4.40
2339 2432 0.603707 ACTGGATTGGACACGCACTG 60.604 55.000 0.00 0.00 0.00 3.66
2340 2433 0.108585 AACTGGATTGGACACGCACT 59.891 50.000 0.00 0.00 0.00 4.40
2341 2434 0.951558 AAACTGGATTGGACACGCAC 59.048 50.000 0.00 0.00 0.00 5.34
2342 2435 1.336440 CAAAACTGGATTGGACACGCA 59.664 47.619 0.00 0.00 0.00 5.24
2343 2436 1.930371 GCAAAACTGGATTGGACACGC 60.930 52.381 0.00 0.00 0.00 5.34
2344 2437 1.336440 TGCAAAACTGGATTGGACACG 59.664 47.619 0.00 0.00 0.00 4.49
2345 2438 2.742774 GTGCAAAACTGGATTGGACAC 58.257 47.619 12.15 3.45 45.18 3.67
2347 2440 4.846779 TTAGTGCAAAACTGGATTGGAC 57.153 40.909 10.00 10.00 45.89 4.02
2348 2441 6.719370 AGTTATTAGTGCAAAACTGGATTGGA 59.281 34.615 0.00 0.00 40.26 3.53
2349 2442 6.808212 CAGTTATTAGTGCAAAACTGGATTGG 59.192 38.462 14.53 0.00 43.17 3.16
2350 2443 7.538678 GTCAGTTATTAGTGCAAAACTGGATTG 59.461 37.037 18.86 0.00 45.62 2.67
2378 2471 4.349342 ACCAGGATTCCTAAGACATCATCC 59.651 45.833 4.51 0.00 29.64 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.