Multiple sequence alignment - TraesCS1B01G394100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G394100 chr1B 100.000 2291 0 0 1 2291 626508286 626505996 0.000000e+00 4231.0
1 TraesCS1B01G394100 chr1B 90.284 844 47 24 548 1384 626594652 626595467 0.000000e+00 1072.0
2 TraesCS1B01G394100 chr1B 86.607 448 38 15 883 1311 626600881 626601325 2.060000e-130 475.0
3 TraesCS1B01G394100 chr1B 86.458 96 12 1 1556 1651 626509995 626510089 1.120000e-18 104.0
4 TraesCS1B01G394100 chr1A 85.948 1224 88 36 203 1384 549637166 549638347 0.000000e+00 1230.0
5 TraesCS1B01G394100 chr1A 91.722 604 26 8 175 756 549601717 549601116 0.000000e+00 817.0
6 TraesCS1B01G394100 chr1A 82.027 523 57 22 883 1384 549666363 549666869 5.890000e-111 411.0
7 TraesCS1B01G394100 chr1A 82.917 480 37 13 1839 2291 549596896 549596435 7.670000e-105 390.0
8 TraesCS1B01G394100 chr1A 97.872 188 4 0 752 939 549598258 549598071 2.190000e-85 326.0
9 TraesCS1B01G394100 chr1A 84.507 142 16 5 1 140 549602139 549602002 3.970000e-28 135.0
10 TraesCS1B01G394100 chr1D 88.127 817 58 25 548 1361 456132034 456132814 0.000000e+00 935.0
11 TraesCS1B01G394100 chr1D 84.926 471 41 19 883 1334 456199660 456200119 1.250000e-122 449.0
12 TraesCS1B01G394100 chr1D 86.595 373 41 8 1751 2120 456036933 456036567 9.860000e-109 403.0
13 TraesCS1B01G394100 chr3A 81.928 166 24 6 1744 1905 531946475 531946638 3.970000e-28 135.0
14 TraesCS1B01G394100 chr3D 84.328 134 16 5 1754 1884 419385512 419385381 2.390000e-25 126.0
15 TraesCS1B01G394100 chr6D 80.272 147 29 0 2145 2291 115539828 115539682 6.690000e-21 111.0
16 TraesCS1B01G394100 chr5A 87.179 78 7 3 1991 2066 118386449 118386373 4.060000e-13 86.1
17 TraesCS1B01G394100 chr4B 97.143 35 0 1 2033 2066 520392186 520392152 8.840000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G394100 chr1B 626505996 626508286 2290 True 4231 4231 100.0000 1 2291 1 chr1B.!!$R1 2290
1 TraesCS1B01G394100 chr1B 626594652 626595467 815 False 1072 1072 90.2840 548 1384 1 chr1B.!!$F2 836
2 TraesCS1B01G394100 chr1A 549637166 549638347 1181 False 1230 1230 85.9480 203 1384 1 chr1A.!!$F1 1181
3 TraesCS1B01G394100 chr1A 549596435 549602139 5704 True 417 817 89.2545 1 2291 4 chr1A.!!$R1 2290
4 TraesCS1B01G394100 chr1A 549666363 549666869 506 False 411 411 82.0270 883 1384 1 chr1A.!!$F2 501
5 TraesCS1B01G394100 chr1D 456132034 456132814 780 False 935 935 88.1270 548 1361 1 chr1D.!!$F1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.318869 ACGTGGCATGTGTTTGCATG 60.319 50.0 12.39 2.06 46.5 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 4667 0.038526 AAAGTCCTACGACACAGGCG 60.039 55.0 0.0 0.0 41.87 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.082408 TGTGTTAGGTACTGTTCGATGGAG 60.082 45.833 0.00 0.00 41.52 3.86
39 40 4.371786 TGTTCGATGGAGACTGCATATTC 58.628 43.478 9.71 0.00 0.00 1.75
40 41 3.667497 TCGATGGAGACTGCATATTCC 57.333 47.619 9.71 0.00 0.00 3.01
48 49 4.021016 GGAGACTGCATATTCCGGTAGATT 60.021 45.833 0.00 0.00 0.00 2.40
56 57 5.743714 GCATATTCCGGTAGATTTGGTGGTA 60.744 44.000 0.00 0.00 0.00 3.25
57 58 3.899052 TTCCGGTAGATTTGGTGGTAG 57.101 47.619 0.00 0.00 0.00 3.18
59 60 3.175594 TCCGGTAGATTTGGTGGTAGTT 58.824 45.455 0.00 0.00 0.00 2.24
60 61 3.055675 TCCGGTAGATTTGGTGGTAGTTG 60.056 47.826 0.00 0.00 0.00 3.16
61 62 3.267483 CGGTAGATTTGGTGGTAGTTGG 58.733 50.000 0.00 0.00 0.00 3.77
68 69 2.871096 TGGTGGTAGTTGGTTGATCC 57.129 50.000 0.00 0.00 0.00 3.36
70 71 2.647299 TGGTGGTAGTTGGTTGATCCAT 59.353 45.455 0.00 0.00 46.60 3.41
75 76 4.780554 TGGTAGTTGGTTGATCCATGTAGA 59.219 41.667 0.00 0.00 46.60 2.59
106 107 0.318869 ACGTGGCATGTGTTTGCATG 60.319 50.000 12.39 2.06 46.50 4.06
116 117 4.987408 TGTGTTTGCATGAATATGAGGG 57.013 40.909 0.00 0.00 36.36 4.30
119 120 9.028097 CATGTGTTTGCATGAATATGAGGGACT 62.028 40.741 0.00 0.00 46.65 3.85
126 127 7.944061 TGCATGAATATGAGGGACTAAATTTG 58.056 34.615 0.00 0.00 41.55 2.32
137 138 9.661954 TGAGGGACTAAATTTGAGATATAGAGT 57.338 33.333 0.00 0.00 41.55 3.24
138 139 9.921637 GAGGGACTAAATTTGAGATATAGAGTG 57.078 37.037 0.00 0.00 41.55 3.51
139 140 9.440761 AGGGACTAAATTTGAGATATAGAGTGT 57.559 33.333 0.00 0.00 36.02 3.55
140 141 9.699703 GGGACTAAATTTGAGATATAGAGTGTC 57.300 37.037 0.00 0.00 0.00 3.67
141 142 9.699703 GGACTAAATTTGAGATATAGAGTGTCC 57.300 37.037 0.00 0.00 0.00 4.02
142 143 9.400638 GACTAAATTTGAGATATAGAGTGTCCG 57.599 37.037 0.00 0.00 0.00 4.79
143 144 7.868415 ACTAAATTTGAGATATAGAGTGTCCGC 59.132 37.037 0.00 0.00 0.00 5.54
145 146 7.526142 AATTTGAGATATAGAGTGTCCGCTA 57.474 36.000 0.00 0.00 0.00 4.26
146 147 6.954487 TTTGAGATATAGAGTGTCCGCTAA 57.046 37.500 0.00 0.00 0.00 3.09
147 148 5.943706 TGAGATATAGAGTGTCCGCTAAC 57.056 43.478 0.00 0.00 0.00 2.34
148 149 4.760715 TGAGATATAGAGTGTCCGCTAACC 59.239 45.833 0.00 0.00 0.00 2.85
149 150 4.988029 AGATATAGAGTGTCCGCTAACCT 58.012 43.478 0.00 0.00 0.00 3.50
150 151 5.005094 AGATATAGAGTGTCCGCTAACCTC 58.995 45.833 0.00 0.00 0.00 3.85
151 152 2.502142 TAGAGTGTCCGCTAACCTCA 57.498 50.000 0.00 0.00 0.00 3.86
152 153 1.853963 AGAGTGTCCGCTAACCTCAT 58.146 50.000 0.00 0.00 0.00 2.90
153 154 3.014304 AGAGTGTCCGCTAACCTCATA 57.986 47.619 0.00 0.00 0.00 2.15
154 155 3.567397 AGAGTGTCCGCTAACCTCATAT 58.433 45.455 0.00 0.00 0.00 1.78
167 412 1.327460 CCTCATATTTGTGTGACGCGG 59.673 52.381 12.47 0.00 0.00 6.46
191 443 0.392998 CGGAACAAGATGACCTGGGG 60.393 60.000 0.00 0.00 0.00 4.96
211 463 4.445448 GGGGAAGTGCTGATCATTCTGTAT 60.445 45.833 0.00 0.00 0.00 2.29
212 464 5.221722 GGGGAAGTGCTGATCATTCTGTATA 60.222 44.000 0.00 0.00 0.00 1.47
233 485 7.818446 TGTATAGTTTGTGGCACGTCTATTTTA 59.182 33.333 23.35 13.46 0.00 1.52
234 486 7.859325 ATAGTTTGTGGCACGTCTATTTTAT 57.141 32.000 13.77 0.58 0.00 1.40
235 487 6.178239 AGTTTGTGGCACGTCTATTTTATC 57.822 37.500 13.77 0.00 0.00 1.75
239 491 7.908827 TTGTGGCACGTCTATTTTATCTTTA 57.091 32.000 13.77 0.00 0.00 1.85
310 573 3.321968 TCGTGGCATAATAGACTCTGCAT 59.678 43.478 0.00 0.00 36.34 3.96
318 581 7.102346 GCATAATAGACTCTGCATATGGAAGT 58.898 38.462 4.56 8.11 34.77 3.01
366 640 6.625960 CGTCTGATCCAGTGTTCTGAAGATAA 60.626 42.308 0.00 0.00 43.76 1.75
372 646 4.389077 CCAGTGTTCTGAAGATAAACCGAC 59.611 45.833 0.00 0.00 43.76 4.79
385 659 1.480212 AACCGACCCAGACATGCAGA 61.480 55.000 0.00 0.00 0.00 4.26
386 660 1.153489 CCGACCCAGACATGCAGAG 60.153 63.158 0.00 0.00 0.00 3.35
396 680 1.302285 CATGCAGAGGCCTGAACCT 59.698 57.895 12.00 0.00 45.04 3.50
397 681 0.323178 CATGCAGAGGCCTGAACCTT 60.323 55.000 12.00 0.00 41.32 3.50
399 683 1.130054 TGCAGAGGCCTGAACCTTCT 61.130 55.000 12.00 0.00 41.32 2.85
401 685 1.488393 GCAGAGGCCTGAACCTTCTAT 59.512 52.381 12.00 0.00 41.32 1.98
402 686 2.484594 GCAGAGGCCTGAACCTTCTATC 60.485 54.545 12.00 0.00 41.32 2.08
403 687 2.768527 CAGAGGCCTGAACCTTCTATCA 59.231 50.000 12.00 0.00 41.32 2.15
404 688 2.769095 AGAGGCCTGAACCTTCTATCAC 59.231 50.000 12.00 0.00 41.32 3.06
407 691 2.026262 GGCCTGAACCTTCTATCACCAA 60.026 50.000 0.00 0.00 0.00 3.67
408 692 3.010420 GCCTGAACCTTCTATCACCAAC 58.990 50.000 0.00 0.00 0.00 3.77
410 694 4.081087 GCCTGAACCTTCTATCACCAACTA 60.081 45.833 0.00 0.00 0.00 2.24
411 695 5.420409 CCTGAACCTTCTATCACCAACTAC 58.580 45.833 0.00 0.00 0.00 2.73
412 696 5.068234 TGAACCTTCTATCACCAACTACG 57.932 43.478 0.00 0.00 0.00 3.51
413 697 4.525487 TGAACCTTCTATCACCAACTACGT 59.475 41.667 0.00 0.00 0.00 3.57
414 698 5.711506 TGAACCTTCTATCACCAACTACGTA 59.288 40.000 0.00 0.00 0.00 3.57
435 726 7.942908 ACGTACTTACATTTAACTCTTTACGC 58.057 34.615 0.00 0.00 33.60 4.42
446 737 4.749245 ACTCTTTACGCCAGATGTTTTG 57.251 40.909 0.00 0.00 0.00 2.44
663 969 4.718940 ATTATCCCCTTTCAGTTTTGCG 57.281 40.909 0.00 0.00 0.00 4.85
861 4033 1.968017 CGTGGTCACCATGCAAGCT 60.968 57.895 2.15 0.00 35.28 3.74
899 4073 7.753659 TCTCTCGATCGAAAGCCTATAAATAG 58.246 38.462 19.92 2.10 0.00 1.73
949 4126 3.276857 CATCTGAAGCCATACTTGCAGT 58.723 45.455 0.00 0.00 39.29 4.40
950 4127 2.703416 TCTGAAGCCATACTTGCAGTG 58.297 47.619 0.00 0.00 39.29 3.66
960 4137 2.358615 TTGCAGTGGCCACTAGCG 60.359 61.111 37.27 25.69 45.17 4.26
1185 4376 1.077930 GATGAAGGAGCAGCAGCCA 60.078 57.895 0.00 0.00 43.56 4.75
1301 4492 0.739462 TCCTGCTAAACCGACGCATG 60.739 55.000 0.00 0.00 32.62 4.06
1303 4494 1.635844 CTGCTAAACCGACGCATGTA 58.364 50.000 0.00 0.00 32.62 2.29
1373 4566 2.004733 CTCTCGCTGCATGTTTCATGA 58.995 47.619 12.98 0.00 0.00 3.07
1384 4577 5.472820 TGCATGTTTCATGAGTGTTGATGTA 59.527 36.000 12.98 0.00 0.00 2.29
1385 4578 6.151480 TGCATGTTTCATGAGTGTTGATGTAT 59.849 34.615 12.98 0.00 0.00 2.29
1386 4579 6.471198 GCATGTTTCATGAGTGTTGATGTATG 59.529 38.462 12.98 0.00 0.00 2.39
1387 4580 7.532571 CATGTTTCATGAGTGTTGATGTATGT 58.467 34.615 3.96 0.00 0.00 2.29
1388 4581 6.901265 TGTTTCATGAGTGTTGATGTATGTG 58.099 36.000 0.00 0.00 0.00 3.21
1389 4582 6.072563 TGTTTCATGAGTGTTGATGTATGTGG 60.073 38.462 0.00 0.00 0.00 4.17
1390 4583 5.419239 TCATGAGTGTTGATGTATGTGGA 57.581 39.130 0.00 0.00 0.00 4.02
1391 4584 5.178061 TCATGAGTGTTGATGTATGTGGAC 58.822 41.667 0.00 0.00 0.00 4.02
1392 4585 3.937814 TGAGTGTTGATGTATGTGGACC 58.062 45.455 0.00 0.00 0.00 4.46
1393 4586 2.930040 GAGTGTTGATGTATGTGGACCG 59.070 50.000 0.00 0.00 0.00 4.79
1394 4587 2.565391 AGTGTTGATGTATGTGGACCGA 59.435 45.455 0.00 0.00 0.00 4.69
1395 4588 3.197766 AGTGTTGATGTATGTGGACCGAT 59.802 43.478 0.00 0.00 0.00 4.18
1396 4589 3.309682 GTGTTGATGTATGTGGACCGATG 59.690 47.826 0.00 0.00 0.00 3.84
1397 4590 3.055458 TGTTGATGTATGTGGACCGATGT 60.055 43.478 0.00 0.00 0.00 3.06
1398 4591 3.177997 TGATGTATGTGGACCGATGTG 57.822 47.619 0.00 0.00 0.00 3.21
1399 4592 1.867233 GATGTATGTGGACCGATGTGC 59.133 52.381 0.00 0.00 0.00 4.57
1400 4593 0.610687 TGTATGTGGACCGATGTGCA 59.389 50.000 0.00 0.00 40.88 4.57
1401 4594 1.209261 TGTATGTGGACCGATGTGCAT 59.791 47.619 0.00 0.00 45.07 3.96
1402 4595 1.867233 GTATGTGGACCGATGTGCATC 59.133 52.381 0.00 2.26 45.07 3.91
1403 4596 0.543277 ATGTGGACCGATGTGCATCT 59.457 50.000 10.05 0.00 45.07 2.90
1404 4597 0.391528 TGTGGACCGATGTGCATCTG 60.392 55.000 10.05 6.37 45.07 2.90
1405 4598 0.108186 GTGGACCGATGTGCATCTGA 60.108 55.000 9.91 0.00 45.07 3.27
1406 4599 0.612744 TGGACCGATGTGCATCTGAA 59.387 50.000 9.91 0.00 37.97 3.02
1407 4600 1.210234 TGGACCGATGTGCATCTGAAT 59.790 47.619 9.91 0.00 37.97 2.57
1408 4601 2.292267 GGACCGATGTGCATCTGAATT 58.708 47.619 9.91 0.00 35.72 2.17
1409 4602 2.684881 GGACCGATGTGCATCTGAATTT 59.315 45.455 9.91 0.00 35.72 1.82
1410 4603 3.242870 GGACCGATGTGCATCTGAATTTC 60.243 47.826 9.91 0.00 35.72 2.17
1411 4604 3.614092 ACCGATGTGCATCTGAATTTCT 58.386 40.909 9.91 0.00 35.72 2.52
1412 4605 3.376234 ACCGATGTGCATCTGAATTTCTG 59.624 43.478 9.91 0.00 35.72 3.02
1413 4606 3.624410 CCGATGTGCATCTGAATTTCTGA 59.376 43.478 8.23 8.23 35.72 3.27
1414 4607 4.095334 CCGATGTGCATCTGAATTTCTGAA 59.905 41.667 9.65 0.00 35.72 3.02
1415 4608 5.220989 CCGATGTGCATCTGAATTTCTGAAT 60.221 40.000 9.65 0.00 35.72 2.57
1416 4609 6.017687 CCGATGTGCATCTGAATTTCTGAATA 60.018 38.462 9.65 0.00 35.72 1.75
1417 4610 7.308408 CCGATGTGCATCTGAATTTCTGAATAT 60.308 37.037 9.65 0.00 35.72 1.28
1418 4611 7.534239 CGATGTGCATCTGAATTTCTGAATATG 59.466 37.037 9.65 5.77 35.72 1.78
1419 4612 6.500910 TGTGCATCTGAATTTCTGAATATGC 58.499 36.000 16.93 16.93 35.51 3.14
1420 4613 6.320418 TGTGCATCTGAATTTCTGAATATGCT 59.680 34.615 21.03 2.22 35.77 3.79
1421 4614 6.637254 GTGCATCTGAATTTCTGAATATGCTG 59.363 38.462 21.03 11.84 35.77 4.41
1422 4615 6.150318 GCATCTGAATTTCTGAATATGCTGG 58.850 40.000 16.68 2.61 33.63 4.85
1423 4616 6.016527 GCATCTGAATTTCTGAATATGCTGGA 60.017 38.462 16.68 0.00 33.63 3.86
1424 4617 7.309255 GCATCTGAATTTCTGAATATGCTGGAT 60.309 37.037 16.68 0.00 33.63 3.41
1425 4618 7.506328 TCTGAATTTCTGAATATGCTGGATG 57.494 36.000 3.74 0.00 0.00 3.51
1426 4619 6.489022 TCTGAATTTCTGAATATGCTGGATGG 59.511 38.462 3.74 0.00 0.00 3.51
1427 4620 6.367161 TGAATTTCTGAATATGCTGGATGGA 58.633 36.000 0.00 0.00 0.00 3.41
1428 4621 7.008332 TGAATTTCTGAATATGCTGGATGGAT 58.992 34.615 0.00 0.00 0.00 3.41
1429 4622 7.176165 TGAATTTCTGAATATGCTGGATGGATC 59.824 37.037 0.00 0.00 0.00 3.36
1438 4631 4.477413 GGATGGATCCTGCTGCAG 57.523 61.111 22.44 22.44 43.73 4.41
1439 4632 1.897615 GGATGGATCCTGCTGCAGC 60.898 63.158 31.89 31.89 43.73 5.25
1440 4633 1.897615 GATGGATCCTGCTGCAGCC 60.898 63.158 34.64 19.03 41.18 4.85
1441 4634 2.340673 GATGGATCCTGCTGCAGCCT 62.341 60.000 34.64 17.26 41.18 4.58
1442 4635 1.934459 ATGGATCCTGCTGCAGCCTT 61.934 55.000 34.64 17.06 41.18 4.35
1443 4636 2.119655 GGATCCTGCTGCAGCCTTG 61.120 63.158 34.64 23.26 41.18 3.61
1444 4637 1.378250 GATCCTGCTGCAGCCTTGT 60.378 57.895 34.64 18.79 41.18 3.16
1445 4638 1.654954 GATCCTGCTGCAGCCTTGTG 61.655 60.000 34.64 18.13 41.18 3.33
1446 4639 2.421923 ATCCTGCTGCAGCCTTGTGT 62.422 55.000 34.64 13.77 41.18 3.72
1447 4640 2.198287 CCTGCTGCAGCCTTGTGTT 61.198 57.895 34.64 0.00 41.18 3.32
1448 4641 1.285023 CTGCTGCAGCCTTGTGTTC 59.715 57.895 34.64 5.72 41.18 3.18
1449 4642 1.152902 TGCTGCAGCCTTGTGTTCT 60.153 52.632 34.64 0.00 41.18 3.01
1450 4643 0.752743 TGCTGCAGCCTTGTGTTCTT 60.753 50.000 34.64 0.00 41.18 2.52
1451 4644 1.238439 GCTGCAGCCTTGTGTTCTTA 58.762 50.000 28.76 0.00 34.31 2.10
1452 4645 1.198637 GCTGCAGCCTTGTGTTCTTAG 59.801 52.381 28.76 0.00 34.31 2.18
1453 4646 2.498167 CTGCAGCCTTGTGTTCTTAGT 58.502 47.619 0.00 0.00 0.00 2.24
1454 4647 2.481952 CTGCAGCCTTGTGTTCTTAGTC 59.518 50.000 0.00 0.00 0.00 2.59
1455 4648 2.104792 TGCAGCCTTGTGTTCTTAGTCT 59.895 45.455 0.00 0.00 0.00 3.24
1456 4649 2.739379 GCAGCCTTGTGTTCTTAGTCTC 59.261 50.000 0.00 0.00 0.00 3.36
1457 4650 3.556004 GCAGCCTTGTGTTCTTAGTCTCT 60.556 47.826 0.00 0.00 0.00 3.10
1458 4651 4.241681 CAGCCTTGTGTTCTTAGTCTCTC 58.758 47.826 0.00 0.00 0.00 3.20
1459 4652 4.021544 CAGCCTTGTGTTCTTAGTCTCTCT 60.022 45.833 0.00 0.00 0.00 3.10
1460 4653 4.591072 AGCCTTGTGTTCTTAGTCTCTCTT 59.409 41.667 0.00 0.00 0.00 2.85
1461 4654 5.775701 AGCCTTGTGTTCTTAGTCTCTCTTA 59.224 40.000 0.00 0.00 0.00 2.10
1462 4655 6.439058 AGCCTTGTGTTCTTAGTCTCTCTTAT 59.561 38.462 0.00 0.00 0.00 1.73
1463 4656 6.533367 GCCTTGTGTTCTTAGTCTCTCTTATG 59.467 42.308 0.00 0.00 0.00 1.90
1464 4657 7.577807 GCCTTGTGTTCTTAGTCTCTCTTATGA 60.578 40.741 0.00 0.00 0.00 2.15
1465 4658 7.973388 CCTTGTGTTCTTAGTCTCTCTTATGAG 59.027 40.741 0.00 0.00 41.51 2.90
1466 4659 8.410673 TTGTGTTCTTAGTCTCTCTTATGAGT 57.589 34.615 5.60 0.00 40.98 3.41
1467 4660 8.410673 TGTGTTCTTAGTCTCTCTTATGAGTT 57.589 34.615 5.60 0.00 40.98 3.01
1468 4661 8.861086 TGTGTTCTTAGTCTCTCTTATGAGTTT 58.139 33.333 5.60 0.00 40.98 2.66
1469 4662 9.349145 GTGTTCTTAGTCTCTCTTATGAGTTTC 57.651 37.037 5.60 0.00 40.98 2.78
1470 4663 8.237949 TGTTCTTAGTCTCTCTTATGAGTTTCG 58.762 37.037 5.60 0.00 40.98 3.46
1471 4664 6.787225 TCTTAGTCTCTCTTATGAGTTTCGC 58.213 40.000 5.60 0.00 40.98 4.70
1472 4665 4.379339 AGTCTCTCTTATGAGTTTCGCC 57.621 45.455 5.60 0.00 40.98 5.54
1473 4666 3.131400 AGTCTCTCTTATGAGTTTCGCCC 59.869 47.826 5.60 0.00 40.98 6.13
1474 4667 2.431057 TCTCTCTTATGAGTTTCGCCCC 59.569 50.000 5.60 0.00 40.98 5.80
1475 4668 1.136305 TCTCTTATGAGTTTCGCCCCG 59.864 52.381 5.60 0.00 40.98 5.73
1476 4669 0.461339 TCTTATGAGTTTCGCCCCGC 60.461 55.000 0.00 0.00 0.00 6.13
1477 4670 1.436983 CTTATGAGTTTCGCCCCGCC 61.437 60.000 0.00 0.00 0.00 6.13
1478 4671 1.906105 TTATGAGTTTCGCCCCGCCT 61.906 55.000 0.00 0.00 0.00 5.52
1479 4672 2.587322 TATGAGTTTCGCCCCGCCTG 62.587 60.000 0.00 0.00 0.00 4.85
1480 4673 4.699522 GAGTTTCGCCCCGCCTGT 62.700 66.667 0.00 0.00 0.00 4.00
1487 4680 4.814294 GCCCCGCCTGTGTCGTAG 62.814 72.222 0.00 0.00 0.00 3.51
1488 4681 4.143333 CCCCGCCTGTGTCGTAGG 62.143 72.222 0.00 0.00 38.39 3.18
1489 4682 3.066190 CCCGCCTGTGTCGTAGGA 61.066 66.667 0.00 0.00 37.52 2.94
1490 4683 2.181021 CCGCCTGTGTCGTAGGAC 59.819 66.667 8.63 8.63 43.71 3.85
1491 4684 2.341101 CCGCCTGTGTCGTAGGACT 61.341 63.158 16.00 0.00 43.79 3.85
1492 4685 1.585006 CGCCTGTGTCGTAGGACTT 59.415 57.895 16.00 0.00 43.79 3.01
1493 4686 0.038526 CGCCTGTGTCGTAGGACTTT 60.039 55.000 16.00 0.00 43.79 2.66
1494 4687 1.429463 GCCTGTGTCGTAGGACTTTG 58.571 55.000 16.00 6.29 43.79 2.77
1495 4688 1.270147 GCCTGTGTCGTAGGACTTTGT 60.270 52.381 16.00 0.00 43.79 2.83
1496 4689 2.404215 CCTGTGTCGTAGGACTTTGTG 58.596 52.381 16.00 3.28 43.79 3.33
1497 4690 2.035449 CCTGTGTCGTAGGACTTTGTGA 59.965 50.000 16.00 0.00 43.79 3.58
1498 4691 3.309388 CTGTGTCGTAGGACTTTGTGAG 58.691 50.000 16.00 0.87 43.79 3.51
1499 4692 2.691526 TGTGTCGTAGGACTTTGTGAGT 59.308 45.455 16.00 0.00 43.79 3.41
1500 4693 3.131577 TGTGTCGTAGGACTTTGTGAGTT 59.868 43.478 16.00 0.00 43.79 3.01
1501 4694 3.489785 GTGTCGTAGGACTTTGTGAGTTG 59.510 47.826 16.00 0.00 43.79 3.16
1502 4695 3.057734 GTCGTAGGACTTTGTGAGTTGG 58.942 50.000 8.31 0.00 39.19 3.77
1503 4696 2.036733 TCGTAGGACTTTGTGAGTTGGG 59.963 50.000 0.00 0.00 39.19 4.12
1504 4697 2.152016 GTAGGACTTTGTGAGTTGGGC 58.848 52.381 0.00 0.00 39.19 5.36
1505 4698 0.178990 AGGACTTTGTGAGTTGGGCC 60.179 55.000 0.00 0.00 39.19 5.80
1506 4699 0.178990 GGACTTTGTGAGTTGGGCCT 60.179 55.000 4.53 0.00 39.19 5.19
1507 4700 1.692411 GACTTTGTGAGTTGGGCCTT 58.308 50.000 4.53 0.00 39.19 4.35
1508 4701 1.338020 GACTTTGTGAGTTGGGCCTTG 59.662 52.381 4.53 0.00 39.19 3.61
1509 4702 1.341976 ACTTTGTGAGTTGGGCCTTGT 60.342 47.619 4.53 0.00 33.92 3.16
1510 4703 1.756538 CTTTGTGAGTTGGGCCTTGTT 59.243 47.619 4.53 0.00 0.00 2.83
1511 4704 1.859302 TTGTGAGTTGGGCCTTGTTT 58.141 45.000 4.53 0.00 0.00 2.83
1512 4705 1.398692 TGTGAGTTGGGCCTTGTTTC 58.601 50.000 4.53 0.00 0.00 2.78
1513 4706 0.310854 GTGAGTTGGGCCTTGTTTCG 59.689 55.000 4.53 0.00 0.00 3.46
1514 4707 0.106918 TGAGTTGGGCCTTGTTTCGT 60.107 50.000 4.53 0.00 0.00 3.85
1515 4708 0.310854 GAGTTGGGCCTTGTTTCGTG 59.689 55.000 4.53 0.00 0.00 4.35
1516 4709 0.395173 AGTTGGGCCTTGTTTCGTGT 60.395 50.000 4.53 0.00 0.00 4.49
1517 4710 1.134037 AGTTGGGCCTTGTTTCGTGTA 60.134 47.619 4.53 0.00 0.00 2.90
1518 4711 1.265905 GTTGGGCCTTGTTTCGTGTAG 59.734 52.381 4.53 0.00 0.00 2.74
1519 4712 0.887387 TGGGCCTTGTTTCGTGTAGC 60.887 55.000 4.53 0.00 0.00 3.58
1520 4713 0.887387 GGGCCTTGTTTCGTGTAGCA 60.887 55.000 0.84 0.00 0.00 3.49
1521 4714 0.517316 GGCCTTGTTTCGTGTAGCAG 59.483 55.000 0.00 0.00 0.00 4.24
1522 4715 0.517316 GCCTTGTTTCGTGTAGCAGG 59.483 55.000 0.00 0.00 0.00 4.85
1523 4716 1.156736 CCTTGTTTCGTGTAGCAGGG 58.843 55.000 0.00 0.00 0.00 4.45
1524 4717 1.156736 CTTGTTTCGTGTAGCAGGGG 58.843 55.000 0.00 0.00 0.00 4.79
1525 4718 0.759959 TTGTTTCGTGTAGCAGGGGA 59.240 50.000 0.00 0.00 0.00 4.81
1526 4719 0.759959 TGTTTCGTGTAGCAGGGGAA 59.240 50.000 0.00 0.00 0.00 3.97
1527 4720 1.141254 TGTTTCGTGTAGCAGGGGAAA 59.859 47.619 0.00 0.00 0.00 3.13
1528 4721 1.804748 GTTTCGTGTAGCAGGGGAAAG 59.195 52.381 0.00 0.00 0.00 2.62
1529 4722 0.321298 TTCGTGTAGCAGGGGAAAGC 60.321 55.000 0.00 0.00 0.00 3.51
1530 4723 1.192146 TCGTGTAGCAGGGGAAAGCT 61.192 55.000 0.00 0.00 44.55 3.74
1531 4724 0.535335 CGTGTAGCAGGGGAAAGCTA 59.465 55.000 0.00 0.00 42.05 3.32
1532 4725 1.471676 CGTGTAGCAGGGGAAAGCTAG 60.472 57.143 0.00 0.00 43.39 3.42
1533 4726 1.555533 GTGTAGCAGGGGAAAGCTAGT 59.444 52.381 0.00 0.00 43.39 2.57
1534 4727 1.831736 TGTAGCAGGGGAAAGCTAGTC 59.168 52.381 0.00 0.00 43.39 2.59
1535 4728 2.112190 GTAGCAGGGGAAAGCTAGTCT 58.888 52.381 0.00 0.00 43.39 3.24
1536 4729 0.908198 AGCAGGGGAAAGCTAGTCTG 59.092 55.000 0.00 0.00 39.78 3.51
1537 4730 0.905357 GCAGGGGAAAGCTAGTCTGA 59.095 55.000 0.00 0.00 0.00 3.27
1538 4731 1.134551 GCAGGGGAAAGCTAGTCTGAG 60.135 57.143 0.00 0.00 0.00 3.35
1539 4732 2.461695 CAGGGGAAAGCTAGTCTGAGA 58.538 52.381 0.00 0.00 0.00 3.27
1540 4733 3.037549 CAGGGGAAAGCTAGTCTGAGAT 58.962 50.000 0.00 0.00 0.00 2.75
1541 4734 3.037549 AGGGGAAAGCTAGTCTGAGATG 58.962 50.000 0.00 0.00 0.00 2.90
1542 4735 2.103941 GGGGAAAGCTAGTCTGAGATGG 59.896 54.545 0.00 0.00 0.00 3.51
1543 4736 2.769095 GGGAAAGCTAGTCTGAGATGGT 59.231 50.000 0.00 0.00 0.00 3.55
1544 4737 3.198853 GGGAAAGCTAGTCTGAGATGGTT 59.801 47.826 0.00 0.00 0.00 3.67
1545 4738 4.187694 GGAAAGCTAGTCTGAGATGGTTG 58.812 47.826 0.00 0.00 0.00 3.77
1546 4739 3.902881 AAGCTAGTCTGAGATGGTTGG 57.097 47.619 0.00 0.00 0.00 3.77
1547 4740 2.114616 AGCTAGTCTGAGATGGTTGGG 58.885 52.381 0.00 0.00 0.00 4.12
1548 4741 2.111384 GCTAGTCTGAGATGGTTGGGA 58.889 52.381 0.00 0.00 0.00 4.37
1549 4742 2.703007 GCTAGTCTGAGATGGTTGGGAT 59.297 50.000 0.00 0.00 0.00 3.85
1550 4743 3.494048 GCTAGTCTGAGATGGTTGGGATG 60.494 52.174 0.00 0.00 0.00 3.51
1551 4744 2.555664 AGTCTGAGATGGTTGGGATGT 58.444 47.619 0.00 0.00 0.00 3.06
1552 4745 3.724478 AGTCTGAGATGGTTGGGATGTA 58.276 45.455 0.00 0.00 0.00 2.29
1553 4746 4.104086 AGTCTGAGATGGTTGGGATGTAA 58.896 43.478 0.00 0.00 0.00 2.41
1554 4747 4.536090 AGTCTGAGATGGTTGGGATGTAAA 59.464 41.667 0.00 0.00 0.00 2.01
1555 4748 5.192522 AGTCTGAGATGGTTGGGATGTAAAT 59.807 40.000 0.00 0.00 0.00 1.40
1556 4749 5.297776 GTCTGAGATGGTTGGGATGTAAATG 59.702 44.000 0.00 0.00 0.00 2.32
1557 4750 5.191522 TCTGAGATGGTTGGGATGTAAATGA 59.808 40.000 0.00 0.00 0.00 2.57
1558 4751 5.439721 TGAGATGGTTGGGATGTAAATGAG 58.560 41.667 0.00 0.00 0.00 2.90
1559 4752 4.210331 AGATGGTTGGGATGTAAATGAGC 58.790 43.478 0.00 0.00 0.00 4.26
1560 4753 3.448093 TGGTTGGGATGTAAATGAGCA 57.552 42.857 0.00 0.00 0.00 4.26
1561 4754 3.355378 TGGTTGGGATGTAAATGAGCAG 58.645 45.455 0.00 0.00 0.00 4.24
1562 4755 3.245229 TGGTTGGGATGTAAATGAGCAGT 60.245 43.478 0.00 0.00 0.00 4.40
1563 4756 3.129287 GGTTGGGATGTAAATGAGCAGTG 59.871 47.826 0.00 0.00 0.00 3.66
1564 4757 2.368439 TGGGATGTAAATGAGCAGTGC 58.632 47.619 7.13 7.13 0.00 4.40
1565 4758 2.025981 TGGGATGTAAATGAGCAGTGCT 60.026 45.455 19.86 19.86 43.88 4.40
1566 4759 2.357009 GGGATGTAAATGAGCAGTGCTG 59.643 50.000 25.35 0.00 39.88 4.41
1567 4760 3.273434 GGATGTAAATGAGCAGTGCTGA 58.727 45.455 25.35 16.26 39.88 4.26
1568 4761 3.691118 GGATGTAAATGAGCAGTGCTGAA 59.309 43.478 25.35 11.25 39.88 3.02
1569 4762 4.337555 GGATGTAAATGAGCAGTGCTGAAT 59.662 41.667 25.35 13.26 39.88 2.57
1570 4763 5.163581 GGATGTAAATGAGCAGTGCTGAATT 60.164 40.000 25.35 16.64 39.88 2.17
1571 4764 5.050644 TGTAAATGAGCAGTGCTGAATTG 57.949 39.130 25.35 0.00 39.88 2.32
1572 4765 2.649331 AATGAGCAGTGCTGAATTGC 57.351 45.000 25.35 7.39 39.88 3.56
1592 4785 6.826893 TTGCTTAAATTCAAGTTGTTGAGC 57.173 33.333 12.04 12.04 43.66 4.26
1593 4786 5.900425 TGCTTAAATTCAAGTTGTTGAGCA 58.100 33.333 15.71 15.71 43.66 4.26
1594 4787 6.514947 TGCTTAAATTCAAGTTGTTGAGCAT 58.485 32.000 15.71 0.00 43.66 3.79
1595 4788 6.421501 TGCTTAAATTCAAGTTGTTGAGCATG 59.578 34.615 15.71 0.00 43.66 4.06
1596 4789 6.642131 GCTTAAATTCAAGTTGTTGAGCATGA 59.358 34.615 13.36 0.00 43.66 3.07
1597 4790 7.358683 GCTTAAATTCAAGTTGTTGAGCATGAC 60.359 37.037 13.36 0.00 43.66 3.06
1598 4791 5.779529 AATTCAAGTTGTTGAGCATGACT 57.220 34.783 2.11 0.00 43.66 3.41
1599 4792 5.779529 ATTCAAGTTGTTGAGCATGACTT 57.220 34.783 2.11 0.00 43.66 3.01
1600 4793 5.581126 TTCAAGTTGTTGAGCATGACTTT 57.419 34.783 2.11 0.00 43.66 2.66
1601 4794 5.173774 TCAAGTTGTTGAGCATGACTTTC 57.826 39.130 2.11 0.00 37.79 2.62
1602 4795 4.883585 TCAAGTTGTTGAGCATGACTTTCT 59.116 37.500 2.11 0.00 37.79 2.52
1603 4796 5.357878 TCAAGTTGTTGAGCATGACTTTCTT 59.642 36.000 2.11 0.00 37.79 2.52
1604 4797 5.841957 AGTTGTTGAGCATGACTTTCTTT 57.158 34.783 0.00 0.00 0.00 2.52
1605 4798 6.212888 AGTTGTTGAGCATGACTTTCTTTT 57.787 33.333 0.00 0.00 0.00 2.27
1606 4799 6.633856 AGTTGTTGAGCATGACTTTCTTTTT 58.366 32.000 0.00 0.00 0.00 1.94
1629 4822 7.920160 TTTCAGATTATGCATGTTAGTGTCA 57.080 32.000 10.16 0.00 0.00 3.58
1630 4823 7.920160 TTCAGATTATGCATGTTAGTGTCAA 57.080 32.000 10.16 0.00 0.00 3.18
1631 4824 8.510243 TTCAGATTATGCATGTTAGTGTCAAT 57.490 30.769 10.16 0.00 0.00 2.57
1632 4825 8.510243 TCAGATTATGCATGTTAGTGTCAATT 57.490 30.769 10.16 0.00 0.00 2.32
1633 4826 8.959548 TCAGATTATGCATGTTAGTGTCAATTT 58.040 29.630 10.16 0.00 0.00 1.82
1634 4827 9.229784 CAGATTATGCATGTTAGTGTCAATTTC 57.770 33.333 10.16 0.00 0.00 2.17
1635 4828 8.959548 AGATTATGCATGTTAGTGTCAATTTCA 58.040 29.630 10.16 0.00 0.00 2.69
1636 4829 8.915871 ATTATGCATGTTAGTGTCAATTTCAC 57.084 30.769 10.16 3.20 36.22 3.18
1637 4830 5.764487 TGCATGTTAGTGTCAATTTCACA 57.236 34.783 11.50 0.00 38.16 3.58
1638 4831 6.141560 TGCATGTTAGTGTCAATTTCACAA 57.858 33.333 11.50 3.70 38.16 3.33
1639 4832 6.207928 TGCATGTTAGTGTCAATTTCACAAG 58.792 36.000 11.50 0.00 38.16 3.16
1640 4833 6.183360 TGCATGTTAGTGTCAATTTCACAAGT 60.183 34.615 11.50 0.00 38.16 3.16
1641 4834 6.142798 GCATGTTAGTGTCAATTTCACAAGTG 59.857 38.462 11.50 0.00 38.16 3.16
1642 4835 6.130298 TGTTAGTGTCAATTTCACAAGTGG 57.870 37.500 11.50 0.00 38.16 4.00
1643 4836 3.715628 AGTGTCAATTTCACAAGTGGC 57.284 42.857 11.50 0.00 38.16 5.01
1644 4837 3.023119 AGTGTCAATTTCACAAGTGGCA 58.977 40.909 11.50 0.00 40.17 4.92
1645 4838 3.638160 AGTGTCAATTTCACAAGTGGCAT 59.362 39.130 11.50 0.00 43.92 4.40
1646 4839 3.737266 GTGTCAATTTCACAAGTGGCATG 59.263 43.478 0.00 0.00 43.92 4.06
1647 4840 3.635836 TGTCAATTTCACAAGTGGCATGA 59.364 39.130 0.00 0.00 37.66 3.07
1648 4841 4.281435 TGTCAATTTCACAAGTGGCATGAT 59.719 37.500 0.00 0.00 37.66 2.45
1649 4842 5.221481 TGTCAATTTCACAAGTGGCATGATT 60.221 36.000 0.00 0.00 37.66 2.57
1650 4843 5.697633 GTCAATTTCACAAGTGGCATGATTT 59.302 36.000 0.00 0.00 32.72 2.17
1651 4844 6.867816 GTCAATTTCACAAGTGGCATGATTTA 59.132 34.615 0.00 0.00 32.72 1.40
1652 4845 7.062605 GTCAATTTCACAAGTGGCATGATTTAG 59.937 37.037 0.00 0.00 32.72 1.85
1653 4846 6.839124 ATTTCACAAGTGGCATGATTTAGA 57.161 33.333 0.00 0.00 0.00 2.10
1654 4847 6.647334 TTTCACAAGTGGCATGATTTAGAA 57.353 33.333 0.00 0.00 0.00 2.10
1668 4861 6.583912 TGATTTAGAATGACGATTCGTTCC 57.416 37.500 13.72 1.97 45.58 3.62
1673 4866 1.191535 ATGACGATTCGTTCCCCAGA 58.808 50.000 13.72 0.00 41.37 3.86
1778 4971 3.771577 AAAGTCGAGTGGTCCAGAATT 57.228 42.857 0.00 0.00 0.00 2.17
1779 4972 3.771577 AAGTCGAGTGGTCCAGAATTT 57.228 42.857 0.00 0.00 0.00 1.82
1780 4973 3.045601 AGTCGAGTGGTCCAGAATTTG 57.954 47.619 0.00 0.00 0.00 2.32
1786 4979 4.739716 CGAGTGGTCCAGAATTTGTTTTTG 59.260 41.667 0.00 0.00 0.00 2.44
1805 4998 8.599774 TGTTTTTGTCATGCTAAACTTTAAAGC 58.400 29.630 15.24 2.00 36.77 3.51
1828 5021 9.566432 AAGCTGTCATCCTCTATATTAAAAAGG 57.434 33.333 0.00 0.00 0.00 3.11
1830 5023 7.094592 GCTGTCATCCTCTATATTAAAAAGGCC 60.095 40.741 0.00 0.00 0.00 5.19
1831 5024 7.811282 TGTCATCCTCTATATTAAAAAGGCCA 58.189 34.615 5.01 0.00 0.00 5.36
1832 5025 8.448008 TGTCATCCTCTATATTAAAAAGGCCAT 58.552 33.333 5.01 0.00 0.00 4.40
1885 6066 9.669887 AAAATGGCAATGCTCTGAAAATAATTA 57.330 25.926 4.82 0.00 0.00 1.40
1919 6100 9.612066 TTGTGATACTTTATATGACTGCATTCA 57.388 29.630 9.39 9.39 35.94 2.57
2020 6211 8.698973 TGTTCACCCTCTTTACAATGAAAATA 57.301 30.769 0.00 0.00 0.00 1.40
2076 6267 6.038161 TCAATAATAAAACTGGACATGGAGCG 59.962 38.462 0.00 0.00 0.00 5.03
2077 6268 2.851263 TAAAACTGGACATGGAGCGT 57.149 45.000 0.00 0.00 0.00 5.07
2078 6269 2.851263 AAAACTGGACATGGAGCGTA 57.149 45.000 0.00 0.00 0.00 4.42
2081 6272 3.350219 AACTGGACATGGAGCGTAAAT 57.650 42.857 0.00 0.00 0.00 1.40
2143 6351 2.398554 CCTTCGGTTGCGGGTCATG 61.399 63.158 0.00 0.00 0.00 3.07
2152 6360 1.375908 GCGGGTCATGACAGCTGAA 60.376 57.895 27.63 8.67 34.95 3.02
2176 6384 4.803426 CGACGGCAGGAGCACCTC 62.803 72.222 0.00 0.00 45.94 3.85
2196 6404 4.309933 CTCGATGCTATTCATTGGCTACA 58.690 43.478 0.00 0.00 37.22 2.74
2218 6426 1.740296 CGGGTTCCAAGGCGTACAG 60.740 63.158 0.00 0.00 0.00 2.74
2225 6433 4.020485 GGTTCCAAGGCGTACAGGATATAT 60.020 45.833 0.00 0.00 0.00 0.86
2268 6476 2.341101 ATCTCCCGCGACGTTGTCT 61.341 57.895 8.23 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.452455 CCAAATCTACCGGAATATGCAGTC 59.548 45.833 9.46 0.00 0.00 3.51
39 40 3.267483 CAACTACCACCAAATCTACCGG 58.733 50.000 0.00 0.00 0.00 5.28
40 41 3.267483 CCAACTACCACCAAATCTACCG 58.733 50.000 0.00 0.00 0.00 4.02
48 49 2.443632 TGGATCAACCAACTACCACCAA 59.556 45.455 0.00 0.00 46.75 3.67
83 84 1.198867 GCAAACACATGCCACGTATGA 59.801 47.619 3.85 0.00 40.49 2.15
84 85 1.068679 TGCAAACACATGCCACGTATG 60.069 47.619 0.00 0.00 45.83 2.39
88 89 0.039346 TCATGCAAACACATGCCACG 60.039 50.000 0.00 0.00 45.75 4.94
91 92 4.684877 TCATATTCATGCAAACACATGCC 58.315 39.130 0.00 0.00 45.75 4.40
99 100 8.537728 AATTTAGTCCCTCATATTCATGCAAA 57.462 30.769 0.00 0.00 31.73 3.68
116 117 9.400638 CGGACACTCTATATCTCAAATTTAGTC 57.599 37.037 0.00 0.00 0.00 2.59
119 120 7.952671 AGCGGACACTCTATATCTCAAATTTA 58.047 34.615 0.00 0.00 0.00 1.40
126 127 5.005094 AGGTTAGCGGACACTCTATATCTC 58.995 45.833 0.00 0.00 0.00 2.75
134 135 4.323553 AATATGAGGTTAGCGGACACTC 57.676 45.455 0.00 0.00 0.00 3.51
135 136 4.081087 ACAAATATGAGGTTAGCGGACACT 60.081 41.667 0.00 0.00 0.00 3.55
137 138 4.188462 CACAAATATGAGGTTAGCGGACA 58.812 43.478 0.00 0.00 0.00 4.02
138 139 4.034048 CACACAAATATGAGGTTAGCGGAC 59.966 45.833 0.00 0.00 0.00 4.79
139 140 4.081365 TCACACAAATATGAGGTTAGCGGA 60.081 41.667 0.00 0.00 0.00 5.54
140 141 4.034048 GTCACACAAATATGAGGTTAGCGG 59.966 45.833 0.00 0.00 0.00 5.52
141 142 4.259810 CGTCACACAAATATGAGGTTAGCG 60.260 45.833 0.00 0.00 0.00 4.26
142 143 4.494199 GCGTCACACAAATATGAGGTTAGC 60.494 45.833 0.00 0.00 34.08 3.09
143 144 4.259810 CGCGTCACACAAATATGAGGTTAG 60.260 45.833 0.00 0.00 34.08 2.34
145 146 2.415168 CGCGTCACACAAATATGAGGTT 59.585 45.455 0.00 0.00 34.08 3.50
146 147 1.999735 CGCGTCACACAAATATGAGGT 59.000 47.619 0.00 0.00 34.08 3.85
147 148 1.327460 CCGCGTCACACAAATATGAGG 59.673 52.381 4.92 0.00 34.57 3.86
148 149 1.999735 ACCGCGTCACACAAATATGAG 59.000 47.619 4.92 0.00 0.00 2.90
149 150 2.087501 ACCGCGTCACACAAATATGA 57.912 45.000 4.92 0.00 0.00 2.15
150 151 2.892373 AACCGCGTCACACAAATATG 57.108 45.000 4.92 0.00 0.00 1.78
151 152 2.350498 GCTAACCGCGTCACACAAATAT 59.650 45.455 4.92 0.00 0.00 1.28
152 153 1.727880 GCTAACCGCGTCACACAAATA 59.272 47.619 4.92 0.00 0.00 1.40
153 154 0.515564 GCTAACCGCGTCACACAAAT 59.484 50.000 4.92 0.00 0.00 2.32
154 155 1.935925 GCTAACCGCGTCACACAAA 59.064 52.632 4.92 0.00 0.00 2.83
167 412 2.673368 CAGGTCATCTTGTTCCGCTAAC 59.327 50.000 0.00 0.00 38.67 2.34
173 418 0.991920 TCCCCAGGTCATCTTGTTCC 59.008 55.000 0.00 0.00 0.00 3.62
191 443 8.333908 CAAACTATACAGAATGATCAGCACTTC 58.666 37.037 0.09 0.00 39.69 3.01
211 463 7.101054 AGATAAAATAGACGTGCCACAAACTA 58.899 34.615 0.00 0.00 0.00 2.24
212 464 5.938125 AGATAAAATAGACGTGCCACAAACT 59.062 36.000 0.00 0.00 0.00 2.66
233 485 9.750125 GTGTTCTTTCTCACCAAAAATAAAGAT 57.250 29.630 0.00 0.00 34.11 2.40
234 486 8.966868 AGTGTTCTTTCTCACCAAAAATAAAGA 58.033 29.630 0.00 0.00 35.45 2.52
239 491 7.287696 ACCATAGTGTTCTTTCTCACCAAAAAT 59.712 33.333 0.00 0.00 35.45 1.82
246 506 5.179555 GGACAACCATAGTGTTCTTTCTCAC 59.820 44.000 0.00 0.00 35.97 3.51
318 581 5.989168 CGTTTGCCTCTACACATATGGATAA 59.011 40.000 7.80 0.00 0.00 1.75
366 640 1.003355 CTGCATGTCTGGGTCGGTT 60.003 57.895 0.00 0.00 0.00 4.44
372 646 2.124403 GGCCTCTGCATGTCTGGG 60.124 66.667 0.00 0.00 40.13 4.45
385 659 1.840635 GGTGATAGAAGGTTCAGGCCT 59.159 52.381 0.00 0.00 41.41 5.19
386 660 1.559682 TGGTGATAGAAGGTTCAGGCC 59.440 52.381 0.00 0.00 0.00 5.19
396 680 7.686438 TGTAAGTACGTAGTTGGTGATAGAA 57.314 36.000 22.98 0.00 37.78 2.10
397 681 7.870509 ATGTAAGTACGTAGTTGGTGATAGA 57.129 36.000 22.98 3.67 37.78 1.98
401 685 8.359642 AGTTAAATGTAAGTACGTAGTTGGTGA 58.640 33.333 22.98 2.83 37.78 4.02
402 686 8.524870 AGTTAAATGTAAGTACGTAGTTGGTG 57.475 34.615 22.98 0.00 37.78 4.17
403 687 8.579863 AGAGTTAAATGTAAGTACGTAGTTGGT 58.420 33.333 22.98 8.09 37.78 3.67
404 688 8.976986 AGAGTTAAATGTAAGTACGTAGTTGG 57.023 34.615 22.98 0.00 37.78 3.77
410 694 7.062255 GGCGTAAAGAGTTAAATGTAAGTACGT 59.938 37.037 0.00 0.00 29.52 3.57
411 695 7.062138 TGGCGTAAAGAGTTAAATGTAAGTACG 59.938 37.037 0.00 0.00 29.78 3.67
412 696 8.243289 TGGCGTAAAGAGTTAAATGTAAGTAC 57.757 34.615 0.00 0.00 0.00 2.73
413 697 8.306038 TCTGGCGTAAAGAGTTAAATGTAAGTA 58.694 33.333 0.00 0.00 0.00 2.24
414 698 7.156673 TCTGGCGTAAAGAGTTAAATGTAAGT 58.843 34.615 0.00 0.00 0.00 2.24
425 710 4.024048 CACAAAACATCTGGCGTAAAGAGT 60.024 41.667 0.00 0.00 0.00 3.24
434 725 2.825205 AGCAAACACAAAACATCTGGC 58.175 42.857 0.00 0.00 0.00 4.85
435 726 3.556775 CCAAGCAAACACAAAACATCTGG 59.443 43.478 0.00 0.00 0.00 3.86
446 737 4.831698 TGCAAGCCAAGCAAACAC 57.168 50.000 0.00 0.00 39.39 3.32
528 834 3.252458 GTCGAAAAATGCAGGTTAGGTGT 59.748 43.478 0.00 0.00 0.00 4.16
861 4033 0.528017 CGAGAGAGCTTGGCAGTGTA 59.472 55.000 0.00 0.00 0.00 2.90
899 4073 1.168714 GTTTGGGGTGAGATGAGTGC 58.831 55.000 0.00 0.00 0.00 4.40
949 4126 0.681887 TAGTAGTGCGCTAGTGGCCA 60.682 55.000 22.23 0.00 37.74 5.36
950 4127 0.030908 CTAGTAGTGCGCTAGTGGCC 59.969 60.000 22.23 0.00 37.74 5.36
960 4137 5.176407 ACAGATTGATCGACTAGTAGTGC 57.824 43.478 7.76 0.00 0.00 4.40
1185 4376 2.463620 CGCGTACTGGCACATGCAT 61.464 57.895 6.15 0.00 44.36 3.96
1218 4409 0.456312 GGGAGTCGACGTACTGCTTG 60.456 60.000 10.46 0.00 37.89 4.01
1301 4492 4.451435 TCTCGTGTGGATCGATCATAGTAC 59.549 45.833 25.93 15.69 36.73 2.73
1303 4494 3.477530 TCTCGTGTGGATCGATCATAGT 58.522 45.455 25.93 0.00 36.73 2.12
1373 4566 2.565391 TCGGTCCACATACATCAACACT 59.435 45.455 0.00 0.00 0.00 3.55
1384 4577 0.543277 AGATGCACATCGGTCCACAT 59.457 50.000 5.04 0.00 42.48 3.21
1385 4578 0.391528 CAGATGCACATCGGTCCACA 60.392 55.000 5.04 0.00 42.48 4.17
1386 4579 0.108186 TCAGATGCACATCGGTCCAC 60.108 55.000 9.99 0.00 42.48 4.02
1387 4580 0.612744 TTCAGATGCACATCGGTCCA 59.387 50.000 9.99 0.00 42.48 4.02
1388 4581 1.959042 ATTCAGATGCACATCGGTCC 58.041 50.000 9.99 0.00 42.48 4.46
1389 4582 3.624861 AGAAATTCAGATGCACATCGGTC 59.375 43.478 9.99 2.01 42.48 4.79
1390 4583 3.376234 CAGAAATTCAGATGCACATCGGT 59.624 43.478 9.99 0.00 42.48 4.69
1391 4584 3.624410 TCAGAAATTCAGATGCACATCGG 59.376 43.478 5.04 4.82 42.48 4.18
1392 4585 4.870221 TCAGAAATTCAGATGCACATCG 57.130 40.909 5.04 1.42 42.48 3.84
1393 4586 7.326305 GCATATTCAGAAATTCAGATGCACATC 59.674 37.037 2.28 2.28 35.00 3.06
1394 4587 7.014326 AGCATATTCAGAAATTCAGATGCACAT 59.986 33.333 12.63 0.00 36.34 3.21
1395 4588 6.320418 AGCATATTCAGAAATTCAGATGCACA 59.680 34.615 12.63 0.00 36.34 4.57
1396 4589 6.637254 CAGCATATTCAGAAATTCAGATGCAC 59.363 38.462 12.63 0.00 36.34 4.57
1397 4590 6.238925 CCAGCATATTCAGAAATTCAGATGCA 60.239 38.462 12.63 0.00 36.34 3.96
1398 4591 6.016527 TCCAGCATATTCAGAAATTCAGATGC 60.017 38.462 4.86 4.86 35.06 3.91
1399 4592 7.506328 TCCAGCATATTCAGAAATTCAGATG 57.494 36.000 0.00 0.00 0.00 2.90
1400 4593 7.176865 CCATCCAGCATATTCAGAAATTCAGAT 59.823 37.037 0.00 0.00 0.00 2.90
1401 4594 6.489022 CCATCCAGCATATTCAGAAATTCAGA 59.511 38.462 0.00 0.00 0.00 3.27
1402 4595 6.489022 TCCATCCAGCATATTCAGAAATTCAG 59.511 38.462 0.00 0.00 0.00 3.02
1403 4596 6.367161 TCCATCCAGCATATTCAGAAATTCA 58.633 36.000 0.00 0.00 0.00 2.57
1404 4597 6.889301 TCCATCCAGCATATTCAGAAATTC 57.111 37.500 0.00 0.00 0.00 2.17
1405 4598 6.436532 GGATCCATCCAGCATATTCAGAAATT 59.563 38.462 6.95 0.00 46.38 1.82
1406 4599 5.950549 GGATCCATCCAGCATATTCAGAAAT 59.049 40.000 6.95 0.00 46.38 2.17
1407 4600 5.319453 GGATCCATCCAGCATATTCAGAAA 58.681 41.667 6.95 0.00 46.38 2.52
1408 4601 4.914983 GGATCCATCCAGCATATTCAGAA 58.085 43.478 6.95 0.00 46.38 3.02
1409 4602 4.564782 GGATCCATCCAGCATATTCAGA 57.435 45.455 6.95 0.00 46.38 3.27
1422 4615 1.897615 GGCTGCAGCAGGATCCATC 60.898 63.158 37.63 15.10 44.36 3.51
1423 4616 1.934459 AAGGCTGCAGCAGGATCCAT 61.934 55.000 37.63 11.52 44.36 3.41
1424 4617 2.609534 AAGGCTGCAGCAGGATCCA 61.610 57.895 37.63 0.00 44.36 3.41
1425 4618 2.119655 CAAGGCTGCAGCAGGATCC 61.120 63.158 37.63 20.45 44.36 3.36
1426 4619 1.378250 ACAAGGCTGCAGCAGGATC 60.378 57.895 37.63 21.19 44.36 3.36
1427 4620 1.677966 CACAAGGCTGCAGCAGGAT 60.678 57.895 37.63 18.89 44.36 3.24
1428 4621 2.281970 CACAAGGCTGCAGCAGGA 60.282 61.111 37.63 0.00 44.36 3.86
1429 4622 2.138656 GAACACAAGGCTGCAGCAGG 62.139 60.000 37.63 27.19 44.36 4.85
1430 4623 1.170919 AGAACACAAGGCTGCAGCAG 61.171 55.000 37.63 27.77 44.36 4.24
1431 4624 0.752743 AAGAACACAAGGCTGCAGCA 60.753 50.000 37.63 0.00 44.36 4.41
1432 4625 1.198637 CTAAGAACACAAGGCTGCAGC 59.801 52.381 30.88 30.88 41.14 5.25
1433 4626 2.481952 GACTAAGAACACAAGGCTGCAG 59.518 50.000 10.11 10.11 0.00 4.41
1434 4627 2.104792 AGACTAAGAACACAAGGCTGCA 59.895 45.455 0.50 0.00 0.00 4.41
1435 4628 2.739379 GAGACTAAGAACACAAGGCTGC 59.261 50.000 0.00 0.00 0.00 5.25
1436 4629 4.021544 AGAGAGACTAAGAACACAAGGCTG 60.022 45.833 0.00 0.00 0.00 4.85
1437 4630 4.156477 AGAGAGACTAAGAACACAAGGCT 58.844 43.478 0.00 0.00 0.00 4.58
1438 4631 4.529109 AGAGAGACTAAGAACACAAGGC 57.471 45.455 0.00 0.00 0.00 4.35
1439 4632 7.831753 TCATAAGAGAGACTAAGAACACAAGG 58.168 38.462 0.00 0.00 0.00 3.61
1440 4633 8.519526 ACTCATAAGAGAGACTAAGAACACAAG 58.480 37.037 1.17 0.00 44.98 3.16
1441 4634 8.410673 ACTCATAAGAGAGACTAAGAACACAA 57.589 34.615 1.17 0.00 44.98 3.33
1442 4635 8.410673 AACTCATAAGAGAGACTAAGAACACA 57.589 34.615 1.17 0.00 44.98 3.72
1443 4636 9.349145 GAAACTCATAAGAGAGACTAAGAACAC 57.651 37.037 1.17 0.00 44.98 3.32
1444 4637 8.237949 CGAAACTCATAAGAGAGACTAAGAACA 58.762 37.037 1.17 0.00 44.98 3.18
1445 4638 7.219344 GCGAAACTCATAAGAGAGACTAAGAAC 59.781 40.741 1.17 0.00 44.98 3.01
1446 4639 7.251994 GCGAAACTCATAAGAGAGACTAAGAA 58.748 38.462 1.17 0.00 44.98 2.52
1447 4640 6.183360 GGCGAAACTCATAAGAGAGACTAAGA 60.183 42.308 1.17 0.00 44.98 2.10
1448 4641 5.974751 GGCGAAACTCATAAGAGAGACTAAG 59.025 44.000 1.17 0.00 44.98 2.18
1449 4642 5.163540 GGGCGAAACTCATAAGAGAGACTAA 60.164 44.000 1.17 0.00 44.98 2.24
1450 4643 4.338682 GGGCGAAACTCATAAGAGAGACTA 59.661 45.833 1.17 0.00 44.98 2.59
1451 4644 3.131400 GGGCGAAACTCATAAGAGAGACT 59.869 47.826 1.17 0.00 44.98 3.24
1452 4645 3.449632 GGGCGAAACTCATAAGAGAGAC 58.550 50.000 1.17 0.00 44.98 3.36
1453 4646 2.431057 GGGGCGAAACTCATAAGAGAGA 59.569 50.000 1.17 0.00 44.98 3.10
1454 4647 2.799917 CGGGGCGAAACTCATAAGAGAG 60.800 54.545 1.17 0.00 44.98 3.20
1455 4648 1.136305 CGGGGCGAAACTCATAAGAGA 59.864 52.381 1.17 0.00 44.98 3.10
1457 4650 0.461339 GCGGGGCGAAACTCATAAGA 60.461 55.000 0.00 0.00 0.00 2.10
1458 4651 1.436983 GGCGGGGCGAAACTCATAAG 61.437 60.000 0.00 0.00 0.00 1.73
1459 4652 1.450669 GGCGGGGCGAAACTCATAA 60.451 57.895 0.00 0.00 0.00 1.90
1460 4653 2.188469 GGCGGGGCGAAACTCATA 59.812 61.111 0.00 0.00 0.00 2.15
1461 4654 3.717294 AGGCGGGGCGAAACTCAT 61.717 61.111 0.00 0.00 0.00 2.90
1462 4655 4.697756 CAGGCGGGGCGAAACTCA 62.698 66.667 0.00 0.00 0.00 3.41
1463 4656 4.699522 ACAGGCGGGGCGAAACTC 62.700 66.667 0.00 0.00 0.00 3.01
1470 4663 4.814294 CTACGACACAGGCGGGGC 62.814 72.222 0.00 0.00 0.00 5.80
1471 4664 4.143333 CCTACGACACAGGCGGGG 62.143 72.222 0.00 0.00 0.00 5.73
1472 4665 3.066190 TCCTACGACACAGGCGGG 61.066 66.667 0.00 0.00 32.82 6.13
1473 4666 1.874345 AAGTCCTACGACACAGGCGG 61.874 60.000 0.00 0.00 41.87 6.13
1474 4667 0.038526 AAAGTCCTACGACACAGGCG 60.039 55.000 0.00 0.00 41.87 5.52
1475 4668 1.270147 ACAAAGTCCTACGACACAGGC 60.270 52.381 0.00 0.00 41.87 4.85
1476 4669 2.035449 TCACAAAGTCCTACGACACAGG 59.965 50.000 0.00 0.00 41.87 4.00
1477 4670 3.243434 ACTCACAAAGTCCTACGACACAG 60.243 47.826 0.00 0.00 41.87 3.66
1478 4671 2.691526 ACTCACAAAGTCCTACGACACA 59.308 45.455 0.00 0.00 41.87 3.72
1479 4672 3.366440 ACTCACAAAGTCCTACGACAC 57.634 47.619 0.00 0.00 41.87 3.67
1480 4673 3.491964 CCAACTCACAAAGTCCTACGACA 60.492 47.826 0.00 0.00 41.87 4.35
1481 4674 3.057734 CCAACTCACAAAGTCCTACGAC 58.942 50.000 0.00 0.00 37.17 4.34
1482 4675 2.036733 CCCAACTCACAAAGTCCTACGA 59.963 50.000 0.00 0.00 37.17 3.43
1483 4676 2.413837 CCCAACTCACAAAGTCCTACG 58.586 52.381 0.00 0.00 37.17 3.51
1484 4677 2.152016 GCCCAACTCACAAAGTCCTAC 58.848 52.381 0.00 0.00 37.17 3.18
1485 4678 1.073284 GGCCCAACTCACAAAGTCCTA 59.927 52.381 0.00 0.00 37.17 2.94
1486 4679 0.178990 GGCCCAACTCACAAAGTCCT 60.179 55.000 0.00 0.00 37.17 3.85
1487 4680 0.178990 AGGCCCAACTCACAAAGTCC 60.179 55.000 0.00 0.00 37.17 3.85
1488 4681 1.338020 CAAGGCCCAACTCACAAAGTC 59.662 52.381 0.00 0.00 37.17 3.01
1489 4682 1.341976 ACAAGGCCCAACTCACAAAGT 60.342 47.619 0.00 0.00 41.10 2.66
1490 4683 1.402787 ACAAGGCCCAACTCACAAAG 58.597 50.000 0.00 0.00 0.00 2.77
1491 4684 1.859302 AACAAGGCCCAACTCACAAA 58.141 45.000 0.00 0.00 0.00 2.83
1492 4685 1.754226 GAAACAAGGCCCAACTCACAA 59.246 47.619 0.00 0.00 0.00 3.33
1493 4686 1.398692 GAAACAAGGCCCAACTCACA 58.601 50.000 0.00 0.00 0.00 3.58
1494 4687 0.310854 CGAAACAAGGCCCAACTCAC 59.689 55.000 0.00 0.00 0.00 3.51
1495 4688 0.106918 ACGAAACAAGGCCCAACTCA 60.107 50.000 0.00 0.00 0.00 3.41
1496 4689 0.310854 CACGAAACAAGGCCCAACTC 59.689 55.000 0.00 0.00 0.00 3.01
1497 4690 0.395173 ACACGAAACAAGGCCCAACT 60.395 50.000 0.00 0.00 0.00 3.16
1498 4691 1.265905 CTACACGAAACAAGGCCCAAC 59.734 52.381 0.00 0.00 0.00 3.77
1499 4692 1.600023 CTACACGAAACAAGGCCCAA 58.400 50.000 0.00 0.00 0.00 4.12
1500 4693 0.887387 GCTACACGAAACAAGGCCCA 60.887 55.000 0.00 0.00 0.00 5.36
1501 4694 0.887387 TGCTACACGAAACAAGGCCC 60.887 55.000 0.00 0.00 0.00 5.80
1502 4695 0.517316 CTGCTACACGAAACAAGGCC 59.483 55.000 0.00 0.00 0.00 5.19
1503 4696 0.517316 CCTGCTACACGAAACAAGGC 59.483 55.000 0.00 0.00 0.00 4.35
1504 4697 1.156736 CCCTGCTACACGAAACAAGG 58.843 55.000 0.00 0.00 0.00 3.61
1505 4698 1.156736 CCCCTGCTACACGAAACAAG 58.843 55.000 0.00 0.00 0.00 3.16
1506 4699 0.759959 TCCCCTGCTACACGAAACAA 59.240 50.000 0.00 0.00 0.00 2.83
1507 4700 0.759959 TTCCCCTGCTACACGAAACA 59.240 50.000 0.00 0.00 0.00 2.83
1508 4701 1.804748 CTTTCCCCTGCTACACGAAAC 59.195 52.381 0.00 0.00 0.00 2.78
1509 4702 1.880646 GCTTTCCCCTGCTACACGAAA 60.881 52.381 0.00 0.00 0.00 3.46
1510 4703 0.321298 GCTTTCCCCTGCTACACGAA 60.321 55.000 0.00 0.00 0.00 3.85
1511 4704 1.192146 AGCTTTCCCCTGCTACACGA 61.192 55.000 0.00 0.00 37.81 4.35
1512 4705 0.535335 TAGCTTTCCCCTGCTACACG 59.465 55.000 0.00 0.00 40.35 4.49
1513 4706 1.555533 ACTAGCTTTCCCCTGCTACAC 59.444 52.381 0.00 0.00 40.35 2.90
1514 4707 1.831736 GACTAGCTTTCCCCTGCTACA 59.168 52.381 0.00 0.00 40.35 2.74
1515 4708 2.112190 AGACTAGCTTTCCCCTGCTAC 58.888 52.381 0.00 0.00 40.35 3.58
1516 4709 2.111384 CAGACTAGCTTTCCCCTGCTA 58.889 52.381 0.00 0.00 40.35 3.49
1517 4710 0.908198 CAGACTAGCTTTCCCCTGCT 59.092 55.000 0.00 0.00 42.67 4.24
1518 4711 0.905357 TCAGACTAGCTTTCCCCTGC 59.095 55.000 0.00 0.00 0.00 4.85
1519 4712 2.461695 TCTCAGACTAGCTTTCCCCTG 58.538 52.381 0.00 0.00 0.00 4.45
1520 4713 2.930109 TCTCAGACTAGCTTTCCCCT 57.070 50.000 0.00 0.00 0.00 4.79
1521 4714 2.103941 CCATCTCAGACTAGCTTTCCCC 59.896 54.545 0.00 0.00 0.00 4.81
1522 4715 2.769095 ACCATCTCAGACTAGCTTTCCC 59.231 50.000 0.00 0.00 0.00 3.97
1523 4716 4.187694 CAACCATCTCAGACTAGCTTTCC 58.812 47.826 0.00 0.00 0.00 3.13
1524 4717 4.187694 CCAACCATCTCAGACTAGCTTTC 58.812 47.826 0.00 0.00 0.00 2.62
1525 4718 3.054802 CCCAACCATCTCAGACTAGCTTT 60.055 47.826 0.00 0.00 0.00 3.51
1526 4719 2.503356 CCCAACCATCTCAGACTAGCTT 59.497 50.000 0.00 0.00 0.00 3.74
1527 4720 2.114616 CCCAACCATCTCAGACTAGCT 58.885 52.381 0.00 0.00 0.00 3.32
1528 4721 2.111384 TCCCAACCATCTCAGACTAGC 58.889 52.381 0.00 0.00 0.00 3.42
1529 4722 3.708631 ACATCCCAACCATCTCAGACTAG 59.291 47.826 0.00 0.00 0.00 2.57
1530 4723 3.724478 ACATCCCAACCATCTCAGACTA 58.276 45.455 0.00 0.00 0.00 2.59
1531 4724 2.555664 ACATCCCAACCATCTCAGACT 58.444 47.619 0.00 0.00 0.00 3.24
1532 4725 4.487714 TTACATCCCAACCATCTCAGAC 57.512 45.455 0.00 0.00 0.00 3.51
1533 4726 5.191522 TCATTTACATCCCAACCATCTCAGA 59.808 40.000 0.00 0.00 0.00 3.27
1534 4727 5.439721 TCATTTACATCCCAACCATCTCAG 58.560 41.667 0.00 0.00 0.00 3.35
1535 4728 5.439721 CTCATTTACATCCCAACCATCTCA 58.560 41.667 0.00 0.00 0.00 3.27
1536 4729 4.276926 GCTCATTTACATCCCAACCATCTC 59.723 45.833 0.00 0.00 0.00 2.75
1537 4730 4.210331 GCTCATTTACATCCCAACCATCT 58.790 43.478 0.00 0.00 0.00 2.90
1538 4731 3.953612 TGCTCATTTACATCCCAACCATC 59.046 43.478 0.00 0.00 0.00 3.51
1539 4732 3.956199 CTGCTCATTTACATCCCAACCAT 59.044 43.478 0.00 0.00 0.00 3.55
1540 4733 3.245229 ACTGCTCATTTACATCCCAACCA 60.245 43.478 0.00 0.00 0.00 3.67
1541 4734 3.129287 CACTGCTCATTTACATCCCAACC 59.871 47.826 0.00 0.00 0.00 3.77
1542 4735 3.428045 GCACTGCTCATTTACATCCCAAC 60.428 47.826 0.00 0.00 0.00 3.77
1543 4736 2.754552 GCACTGCTCATTTACATCCCAA 59.245 45.455 0.00 0.00 0.00 4.12
1544 4737 2.025981 AGCACTGCTCATTTACATCCCA 60.026 45.455 0.00 0.00 30.62 4.37
1545 4738 2.357009 CAGCACTGCTCATTTACATCCC 59.643 50.000 0.00 0.00 36.40 3.85
1546 4739 3.273434 TCAGCACTGCTCATTTACATCC 58.727 45.455 0.00 0.00 36.40 3.51
1547 4740 4.952262 TTCAGCACTGCTCATTTACATC 57.048 40.909 0.00 0.00 36.40 3.06
1548 4741 5.647589 CAATTCAGCACTGCTCATTTACAT 58.352 37.500 0.00 0.00 36.40 2.29
1549 4742 4.616604 GCAATTCAGCACTGCTCATTTACA 60.617 41.667 0.00 0.00 36.40 2.41
1550 4743 3.855950 GCAATTCAGCACTGCTCATTTAC 59.144 43.478 0.00 0.00 36.40 2.01
1551 4744 3.760151 AGCAATTCAGCACTGCTCATTTA 59.240 39.130 0.00 0.00 42.73 1.40
1552 4745 2.561419 AGCAATTCAGCACTGCTCATTT 59.439 40.909 0.00 0.00 42.73 2.32
1553 4746 2.168496 AGCAATTCAGCACTGCTCATT 58.832 42.857 0.00 0.00 42.73 2.57
1554 4747 1.835494 AGCAATTCAGCACTGCTCAT 58.165 45.000 0.00 0.00 42.73 2.90
1555 4748 1.612676 AAGCAATTCAGCACTGCTCA 58.387 45.000 0.00 0.00 45.50 4.26
1556 4749 3.837213 TTAAGCAATTCAGCACTGCTC 57.163 42.857 0.00 0.00 45.50 4.26
1567 4760 7.495279 TGCTCAACAACTTGAATTTAAGCAATT 59.505 29.630 9.73 0.00 35.92 2.32
1568 4761 6.985645 TGCTCAACAACTTGAATTTAAGCAAT 59.014 30.769 9.73 0.00 35.92 3.56
1569 4762 6.336566 TGCTCAACAACTTGAATTTAAGCAA 58.663 32.000 9.73 0.00 35.92 3.91
1570 4763 5.900425 TGCTCAACAACTTGAATTTAAGCA 58.100 33.333 9.73 0.00 35.92 3.91
1571 4764 6.642131 TCATGCTCAACAACTTGAATTTAAGC 59.358 34.615 9.73 0.00 35.92 3.09
1572 4765 7.864379 AGTCATGCTCAACAACTTGAATTTAAG 59.136 33.333 8.34 8.34 35.92 1.85
1573 4766 7.715657 AGTCATGCTCAACAACTTGAATTTAA 58.284 30.769 0.00 0.00 35.92 1.52
1574 4767 7.275888 AGTCATGCTCAACAACTTGAATTTA 57.724 32.000 0.00 0.00 35.92 1.40
1575 4768 6.152932 AGTCATGCTCAACAACTTGAATTT 57.847 33.333 0.00 0.00 35.92 1.82
1576 4769 5.779529 AGTCATGCTCAACAACTTGAATT 57.220 34.783 0.00 0.00 35.92 2.17
1577 4770 5.779529 AAGTCATGCTCAACAACTTGAAT 57.220 34.783 0.00 0.00 35.92 2.57
1578 4771 5.357878 AGAAAGTCATGCTCAACAACTTGAA 59.642 36.000 0.00 0.00 35.92 2.69
1579 4772 4.883585 AGAAAGTCATGCTCAACAACTTGA 59.116 37.500 0.00 0.00 35.04 3.02
1580 4773 5.179045 AGAAAGTCATGCTCAACAACTTG 57.821 39.130 0.00 0.00 30.95 3.16
1581 4774 5.841957 AAGAAAGTCATGCTCAACAACTT 57.158 34.783 0.00 0.00 0.00 2.66
1582 4775 5.841957 AAAGAAAGTCATGCTCAACAACT 57.158 34.783 0.00 0.00 0.00 3.16
1583 4776 6.892310 AAAAAGAAAGTCATGCTCAACAAC 57.108 33.333 0.00 0.00 0.00 3.32
1603 4796 8.791675 TGACACTAACATGCATAATCTGAAAAA 58.208 29.630 0.00 0.00 0.00 1.94
1604 4797 8.334263 TGACACTAACATGCATAATCTGAAAA 57.666 30.769 0.00 0.00 0.00 2.29
1605 4798 7.920160 TGACACTAACATGCATAATCTGAAA 57.080 32.000 0.00 0.00 0.00 2.69
1606 4799 7.920160 TTGACACTAACATGCATAATCTGAA 57.080 32.000 0.00 0.00 0.00 3.02
1607 4800 8.510243 AATTGACACTAACATGCATAATCTGA 57.490 30.769 0.00 0.00 0.00 3.27
1608 4801 9.229784 GAAATTGACACTAACATGCATAATCTG 57.770 33.333 0.00 0.00 0.00 2.90
1609 4802 8.959548 TGAAATTGACACTAACATGCATAATCT 58.040 29.630 0.00 0.00 0.00 2.40
1610 4803 9.013490 GTGAAATTGACACTAACATGCATAATC 57.987 33.333 0.00 0.00 35.66 1.75
1611 4804 8.522003 TGTGAAATTGACACTAACATGCATAAT 58.478 29.630 0.00 0.00 38.81 1.28
1612 4805 7.880105 TGTGAAATTGACACTAACATGCATAA 58.120 30.769 0.00 0.00 38.81 1.90
1613 4806 7.446001 TGTGAAATTGACACTAACATGCATA 57.554 32.000 0.00 0.00 38.81 3.14
1614 4807 6.330004 TGTGAAATTGACACTAACATGCAT 57.670 33.333 14.24 0.00 38.81 3.96
1615 4808 5.764487 TGTGAAATTGACACTAACATGCA 57.236 34.783 14.24 0.00 38.81 3.96
1616 4809 6.142798 CACTTGTGAAATTGACACTAACATGC 59.857 38.462 14.24 0.00 38.81 4.06
1617 4810 6.638063 CCACTTGTGAAATTGACACTAACATG 59.362 38.462 14.24 0.00 38.81 3.21
1618 4811 6.735694 GCCACTTGTGAAATTGACACTAACAT 60.736 38.462 14.24 0.00 38.81 2.71
1619 4812 5.449862 GCCACTTGTGAAATTGACACTAACA 60.450 40.000 14.24 0.00 38.81 2.41
1620 4813 4.976116 GCCACTTGTGAAATTGACACTAAC 59.024 41.667 14.24 0.00 38.81 2.34
1621 4814 4.642437 TGCCACTTGTGAAATTGACACTAA 59.358 37.500 14.24 8.21 38.81 2.24
1622 4815 4.203226 TGCCACTTGTGAAATTGACACTA 58.797 39.130 14.24 8.15 38.81 2.74
1623 4816 3.023119 TGCCACTTGTGAAATTGACACT 58.977 40.909 14.24 0.00 38.81 3.55
1624 4817 3.435105 TGCCACTTGTGAAATTGACAC 57.565 42.857 1.89 8.50 38.55 3.67
1625 4818 3.635836 TCATGCCACTTGTGAAATTGACA 59.364 39.130 1.89 0.00 0.00 3.58
1626 4819 4.241590 TCATGCCACTTGTGAAATTGAC 57.758 40.909 1.89 0.00 0.00 3.18
1627 4820 5.471556 AATCATGCCACTTGTGAAATTGA 57.528 34.783 1.89 1.24 0.00 2.57
1628 4821 7.092079 TCTAAATCATGCCACTTGTGAAATTG 58.908 34.615 1.89 0.00 0.00 2.32
1629 4822 7.230849 TCTAAATCATGCCACTTGTGAAATT 57.769 32.000 1.89 0.00 0.00 1.82
1630 4823 6.839124 TCTAAATCATGCCACTTGTGAAAT 57.161 33.333 1.89 0.00 0.00 2.17
1631 4824 6.647334 TTCTAAATCATGCCACTTGTGAAA 57.353 33.333 1.89 0.00 0.00 2.69
1632 4825 6.433716 TCATTCTAAATCATGCCACTTGTGAA 59.566 34.615 1.89 0.00 0.00 3.18
1633 4826 5.945191 TCATTCTAAATCATGCCACTTGTGA 59.055 36.000 1.89 0.00 0.00 3.58
1634 4827 6.032094 GTCATTCTAAATCATGCCACTTGTG 58.968 40.000 0.00 0.00 0.00 3.33
1635 4828 5.163723 CGTCATTCTAAATCATGCCACTTGT 60.164 40.000 0.00 0.00 0.00 3.16
1636 4829 5.065090 TCGTCATTCTAAATCATGCCACTTG 59.935 40.000 0.00 0.00 0.00 3.16
1637 4830 5.185454 TCGTCATTCTAAATCATGCCACTT 58.815 37.500 0.00 0.00 0.00 3.16
1638 4831 4.769688 TCGTCATTCTAAATCATGCCACT 58.230 39.130 0.00 0.00 0.00 4.00
1639 4832 5.679734 ATCGTCATTCTAAATCATGCCAC 57.320 39.130 0.00 0.00 0.00 5.01
1640 4833 5.050159 CGAATCGTCATTCTAAATCATGCCA 60.050 40.000 0.00 0.00 36.93 4.92
1641 4834 5.050091 ACGAATCGTCATTCTAAATCATGCC 60.050 40.000 0.96 0.00 33.69 4.40
1642 4835 5.978878 ACGAATCGTCATTCTAAATCATGC 58.021 37.500 0.96 0.00 33.69 4.06
1643 4836 7.065894 GGAACGAATCGTCATTCTAAATCATG 58.934 38.462 9.32 0.00 39.99 3.07
1644 4837 6.202954 GGGAACGAATCGTCATTCTAAATCAT 59.797 38.462 9.32 0.00 39.99 2.45
1645 4838 5.522460 GGGAACGAATCGTCATTCTAAATCA 59.478 40.000 9.32 0.00 39.99 2.57
1646 4839 5.050295 GGGGAACGAATCGTCATTCTAAATC 60.050 44.000 9.32 0.00 39.99 2.17
1647 4840 4.814771 GGGGAACGAATCGTCATTCTAAAT 59.185 41.667 9.32 0.00 39.99 1.40
1648 4841 4.186159 GGGGAACGAATCGTCATTCTAAA 58.814 43.478 9.32 0.00 39.99 1.85
1649 4842 3.196039 TGGGGAACGAATCGTCATTCTAA 59.804 43.478 9.32 0.00 39.99 2.10
1650 4843 2.761767 TGGGGAACGAATCGTCATTCTA 59.238 45.455 9.32 0.00 39.99 2.10
1651 4844 1.553248 TGGGGAACGAATCGTCATTCT 59.447 47.619 9.32 0.00 39.99 2.40
1652 4845 1.933853 CTGGGGAACGAATCGTCATTC 59.066 52.381 9.32 2.78 39.99 2.67
1653 4846 1.553248 TCTGGGGAACGAATCGTCATT 59.447 47.619 9.32 0.00 39.99 2.57
1654 4847 1.137086 CTCTGGGGAACGAATCGTCAT 59.863 52.381 9.32 0.00 39.99 3.06
1668 4861 2.445654 GGAGCTCCTCCCTCTGGG 60.446 72.222 26.25 0.00 44.36 4.45
1695 4888 4.376340 AAAACACTTGAACAGCCAGAAG 57.624 40.909 0.00 0.00 0.00 2.85
1759 4952 3.181454 ACAAATTCTGGACCACTCGACTT 60.181 43.478 0.00 0.00 0.00 3.01
1760 4953 2.368875 ACAAATTCTGGACCACTCGACT 59.631 45.455 0.00 0.00 0.00 4.18
1763 4956 4.568152 AAAACAAATTCTGGACCACTCG 57.432 40.909 0.00 0.00 0.00 4.18
1765 4958 5.186797 TGACAAAAACAAATTCTGGACCACT 59.813 36.000 0.00 0.00 0.00 4.00
1772 4965 8.819974 AGTTTAGCATGACAAAAACAAATTCTG 58.180 29.630 0.00 0.00 34.92 3.02
1779 4972 8.599774 GCTTTAAAGTTTAGCATGACAAAAACA 58.400 29.630 16.38 0.00 34.92 2.83
1780 4973 8.817100 AGCTTTAAAGTTTAGCATGACAAAAAC 58.183 29.630 16.38 0.82 37.37 2.43
1786 4979 6.668323 TGACAGCTTTAAAGTTTAGCATGAC 58.332 36.000 16.38 8.35 37.37 3.06
1804 4997 7.094592 GGCCTTTTTAATATAGAGGATGACAGC 60.095 40.741 0.00 0.00 0.00 4.40
1805 4998 7.939039 TGGCCTTTTTAATATAGAGGATGACAG 59.061 37.037 3.32 0.00 0.00 3.51
1890 6071 8.785329 TGCAGTCATATAAAGTATCACAACAA 57.215 30.769 0.00 0.00 0.00 2.83
1891 6072 8.962884 ATGCAGTCATATAAAGTATCACAACA 57.037 30.769 0.00 0.00 0.00 3.33
1892 6073 9.869844 GAATGCAGTCATATAAAGTATCACAAC 57.130 33.333 9.72 0.00 31.46 3.32
1996 6187 9.788960 GATATTTTCATTGTAAAGAGGGTGAAC 57.211 33.333 0.00 0.00 0.00 3.18
2001 6192 9.956720 GACATGATATTTTCATTGTAAAGAGGG 57.043 33.333 0.00 0.00 42.62 4.30
2050 6241 7.420800 GCTCCATGTCCAGTTTTATTATTGAG 58.579 38.462 0.00 0.00 0.00 3.02
2051 6242 6.038161 CGCTCCATGTCCAGTTTTATTATTGA 59.962 38.462 0.00 0.00 0.00 2.57
2052 6243 6.183360 ACGCTCCATGTCCAGTTTTATTATTG 60.183 38.462 0.00 0.00 0.00 1.90
2053 6244 5.885912 ACGCTCCATGTCCAGTTTTATTATT 59.114 36.000 0.00 0.00 0.00 1.40
2054 6245 5.437060 ACGCTCCATGTCCAGTTTTATTAT 58.563 37.500 0.00 0.00 0.00 1.28
2055 6246 4.839121 ACGCTCCATGTCCAGTTTTATTA 58.161 39.130 0.00 0.00 0.00 0.98
2056 6247 3.686016 ACGCTCCATGTCCAGTTTTATT 58.314 40.909 0.00 0.00 0.00 1.40
2057 6248 3.350219 ACGCTCCATGTCCAGTTTTAT 57.650 42.857 0.00 0.00 0.00 1.40
2058 6249 2.851263 ACGCTCCATGTCCAGTTTTA 57.149 45.000 0.00 0.00 0.00 1.52
2059 6250 2.851263 TACGCTCCATGTCCAGTTTT 57.149 45.000 0.00 0.00 0.00 2.43
2060 6251 2.851263 TTACGCTCCATGTCCAGTTT 57.149 45.000 0.00 0.00 0.00 2.66
2061 6252 2.851263 TTTACGCTCCATGTCCAGTT 57.149 45.000 0.00 0.00 0.00 3.16
2062 6253 2.632377 CATTTACGCTCCATGTCCAGT 58.368 47.619 0.00 0.00 0.00 4.00
2063 6254 1.942657 CCATTTACGCTCCATGTCCAG 59.057 52.381 0.00 0.00 0.00 3.86
2064 6255 2.016604 GCCATTTACGCTCCATGTCCA 61.017 52.381 0.00 0.00 0.00 4.02
2065 6256 0.663153 GCCATTTACGCTCCATGTCC 59.337 55.000 0.00 0.00 0.00 4.02
2076 6267 3.874543 TCATACGGTGTCATGCCATTTAC 59.125 43.478 0.00 0.00 0.00 2.01
2077 6268 4.126437 CTCATACGGTGTCATGCCATTTA 58.874 43.478 0.00 0.00 0.00 1.40
2078 6269 2.945008 CTCATACGGTGTCATGCCATTT 59.055 45.455 0.00 0.00 0.00 2.32
2081 6272 0.177836 CCTCATACGGTGTCATGCCA 59.822 55.000 0.00 0.00 0.00 4.92
2131 6337 1.672356 AGCTGTCATGACCCGCAAC 60.672 57.895 28.16 12.19 31.76 4.17
2152 6360 1.228657 GCTCCTGCCGTCGAGTTTTT 61.229 55.000 0.00 0.00 0.00 1.94
2156 6364 4.057428 GTGCTCCTGCCGTCGAGT 62.057 66.667 0.00 0.00 38.71 4.18
2164 6372 2.894387 GCATCGAGGTGCTCCTGC 60.894 66.667 13.11 6.53 45.24 4.85
2176 6384 4.751600 TCTTGTAGCCAATGAATAGCATCG 59.248 41.667 0.00 0.00 35.78 3.84
2186 6394 1.737793 GAACCCGTCTTGTAGCCAATG 59.262 52.381 0.00 0.00 0.00 2.82
2187 6395 1.339727 GGAACCCGTCTTGTAGCCAAT 60.340 52.381 0.00 0.00 0.00 3.16
2188 6396 0.035739 GGAACCCGTCTTGTAGCCAA 59.964 55.000 0.00 0.00 0.00 4.52
2196 6404 1.474332 TACGCCTTGGAACCCGTCTT 61.474 55.000 0.00 0.00 35.36 3.01
2218 6426 4.866508 TTCGTGACAGGGTCATATATCC 57.133 45.455 2.02 0.00 44.63 2.59
2225 6433 0.948623 CGCATTTCGTGACAGGGTCA 60.949 55.000 0.00 0.00 40.50 4.02
2268 6476 1.144969 CAACGCGCCTCTTAGTCAAA 58.855 50.000 5.73 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.