Multiple sequence alignment - TraesCS1B01G394000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G394000 chr1B 100.000 3107 0 0 1 3107 626503169 626500063 0.000000e+00 5738.0
1 TraesCS1B01G394000 chr1B 92.328 378 15 7 2732 3107 626510688 626511053 2.740000e-145 525.0
2 TraesCS1B01G394000 chr1B 98.246 57 1 0 1336 1392 626501741 626501685 1.970000e-17 100.0
3 TraesCS1B01G394000 chr6B 97.867 1219 21 5 1473 2689 485533214 485531999 0.000000e+00 2102.0
4 TraesCS1B01G394000 chr6B 96.204 1001 33 2 1 997 485536069 485535070 0.000000e+00 1633.0
5 TraesCS1B01G394000 chr6B 99.020 306 3 0 994 1299 485533781 485533476 1.630000e-152 549.0
6 TraesCS1B01G394000 chr6B 93.671 237 13 1 1299 1535 485533418 485533184 1.370000e-93 353.0
7 TraesCS1B01G394000 chr5B 97.867 1219 21 5 1473 2689 565907132 565908347 0.000000e+00 2102.0
8 TraesCS1B01G394000 chr5B 97.865 1218 21 5 1473 2688 565834528 565835742 0.000000e+00 2100.0
9 TraesCS1B01G394000 chr5B 96.204 1001 33 2 1 997 565831673 565832672 0.000000e+00 1633.0
10 TraesCS1B01G394000 chr5B 96.204 1001 33 2 1 997 565904277 565905276 0.000000e+00 1633.0
11 TraesCS1B01G394000 chr5B 99.020 306 3 0 994 1299 565833961 565834266 1.630000e-152 549.0
12 TraesCS1B01G394000 chr5B 99.020 306 3 0 994 1299 565906565 565906870 1.630000e-152 549.0
13 TraesCS1B01G394000 chr5B 93.671 237 13 1 1299 1535 565834324 565834558 1.370000e-93 353.0
14 TraesCS1B01G394000 chr5B 93.671 237 13 1 1299 1535 565906928 565907162 1.370000e-93 353.0
15 TraesCS1B01G394000 chr2D 97.865 1218 21 5 1473 2688 642017497 642018711 0.000000e+00 2100.0
16 TraesCS1B01G394000 chr2D 96.204 1001 33 2 1 997 642014644 642015643 0.000000e+00 1633.0
17 TraesCS1B01G394000 chr2D 89.872 701 33 13 1990 2689 585949364 585948701 0.000000e+00 867.0
18 TraesCS1B01G394000 chr2D 99.020 306 3 0 994 1299 642016932 642017237 1.630000e-152 549.0
19 TraesCS1B01G394000 chr2D 93.671 237 13 1 1299 1535 642017293 642017527 1.370000e-93 353.0
20 TraesCS1B01G394000 chr2A 97.865 1218 21 5 1473 2688 294768009 294769223 0.000000e+00 2100.0
21 TraesCS1B01G394000 chr2A 96.204 1001 33 2 1 997 294765154 294766153 0.000000e+00 1633.0
22 TraesCS1B01G394000 chr2A 99.020 306 3 0 994 1299 294767442 294767747 1.630000e-152 549.0
23 TraesCS1B01G394000 chr2A 93.671 237 13 1 1299 1535 294767805 294768039 1.370000e-93 353.0
24 TraesCS1B01G394000 chr5A 91.200 1250 73 14 1473 2689 177594274 177595519 0.000000e+00 1664.0
25 TraesCS1B01G394000 chr5A 96.732 306 7 1 994 1299 177593718 177594020 9.940000e-140 507.0
26 TraesCS1B01G394000 chr5A 90.031 321 19 10 277 596 177592962 177593270 1.340000e-108 403.0
27 TraesCS1B01G394000 chr5A 90.717 237 22 0 1299 1535 177594068 177594304 1.800000e-82 316.0
28 TraesCS1B01G394000 chr5A 86.826 167 9 8 97 250 177592804 177592970 1.150000e-39 174.0
29 TraesCS1B01G394000 chr5A 93.750 64 4 0 1335 1398 177594197 177594260 2.550000e-16 97.1
30 TraesCS1B01G394000 chr4B 97.740 885 15 5 1806 2688 647588434 647589315 0.000000e+00 1519.0
31 TraesCS1B01G394000 chr3A 87.786 1007 72 34 1 997 128545649 128546614 0.000000e+00 1131.0
32 TraesCS1B01G394000 chr3A 90.733 464 42 1 531 994 416040613 416041075 4.400000e-173 617.0
33 TraesCS1B01G394000 chr7B 97.285 663 13 5 2028 2688 682740753 682741412 0.000000e+00 1120.0
34 TraesCS1B01G394000 chr7B 93.199 397 23 2 1 393 682740338 682740734 5.780000e-162 580.0
35 TraesCS1B01G394000 chr4D 87.265 958 104 13 1336 2285 304695229 304696176 0.000000e+00 1077.0
36 TraesCS1B01G394000 chr4D 82.448 433 40 19 19 428 259488429 259488010 2.290000e-91 346.0
37 TraesCS1B01G394000 chr6A 89.329 834 78 8 1457 2285 607383237 607384064 0.000000e+00 1037.0
38 TraesCS1B01G394000 chr6A 90.517 464 44 0 531 994 607378311 607378774 5.690000e-172 614.0
39 TraesCS1B01G394000 chr1A 89.329 834 78 8 1457 2285 18494266 18493439 0.000000e+00 1037.0
40 TraesCS1B01G394000 chr1A 91.164 464 41 0 534 997 18496630 18496167 5.650000e-177 630.0
41 TraesCS1B01G394000 chr1A 90.263 380 20 4 2732 3107 549589837 549589471 6.030000e-132 481.0
42 TraesCS1B01G394000 chr1A 87.871 404 12 13 2706 3107 549622300 549621932 1.020000e-119 440.0
43 TraesCS1B01G394000 chr1A 89.602 327 29 3 994 1320 18494827 18494506 8.020000e-111 411.0
44 TraesCS1B01G394000 chr1A 87.812 361 13 11 2749 3107 549604007 549604338 8.080000e-106 394.0
45 TraesCS1B01G394000 chr1A 81.879 149 14 9 2697 2844 549594051 549593915 2.530000e-21 113.0
46 TraesCS1B01G394000 chr1D 90.909 407 16 6 2701 3107 456060192 456060577 7.630000e-146 527.0
47 TraesCS1B01G394000 chr1D 90.073 413 14 8 2698 3107 456035078 456034690 7.690000e-141 510.0
48 TraesCS1B01G394000 chr6D 90.214 327 26 4 994 1320 156256264 156255944 3.700000e-114 422.0
49 TraesCS1B01G394000 chr6D 88.710 62 7 0 37 98 63326483 63326422 3.320000e-10 76.8
50 TraesCS1B01G394000 chr3D 89.297 327 29 4 994 1320 432090808 432091128 3.730000e-109 405.0
51 TraesCS1B01G394000 chr2B 77.937 349 35 26 44 379 442803548 442803229 2.460000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G394000 chr1B 626500063 626503169 3106 True 2919.000000 5738 99.123000 1 3107 2 chr1B.!!$R1 3106
1 TraesCS1B01G394000 chr6B 485531999 485536069 4070 True 1159.250000 2102 96.690500 1 2689 4 chr6B.!!$R1 2688
2 TraesCS1B01G394000 chr5B 565904277 565908347 4070 False 1159.250000 2102 96.690500 1 2689 4 chr5B.!!$F2 2688
3 TraesCS1B01G394000 chr5B 565831673 565835742 4069 False 1158.750000 2100 96.690000 1 2688 4 chr5B.!!$F1 2687
4 TraesCS1B01G394000 chr2D 642014644 642018711 4067 False 1158.750000 2100 96.690000 1 2688 4 chr2D.!!$F1 2687
5 TraesCS1B01G394000 chr2D 585948701 585949364 663 True 867.000000 867 89.872000 1990 2689 1 chr2D.!!$R1 699
6 TraesCS1B01G394000 chr2A 294765154 294769223 4069 False 1158.750000 2100 96.690000 1 2688 4 chr2A.!!$F1 2687
7 TraesCS1B01G394000 chr5A 177592804 177595519 2715 False 526.850000 1664 91.542667 97 2689 6 chr5A.!!$F1 2592
8 TraesCS1B01G394000 chr4B 647588434 647589315 881 False 1519.000000 1519 97.740000 1806 2688 1 chr4B.!!$F1 882
9 TraesCS1B01G394000 chr3A 128545649 128546614 965 False 1131.000000 1131 87.786000 1 997 1 chr3A.!!$F1 996
10 TraesCS1B01G394000 chr7B 682740338 682741412 1074 False 850.000000 1120 95.242000 1 2688 2 chr7B.!!$F1 2687
11 TraesCS1B01G394000 chr4D 304695229 304696176 947 False 1077.000000 1077 87.265000 1336 2285 1 chr4D.!!$F1 949
12 TraesCS1B01G394000 chr6A 607383237 607384064 827 False 1037.000000 1037 89.329000 1457 2285 1 chr6A.!!$F2 828
13 TraesCS1B01G394000 chr1A 18493439 18496630 3191 True 692.666667 1037 90.031667 534 2285 3 chr1A.!!$R4 1751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 626 0.89327 TAATTTGTGCGGCAGTGGCT 60.893 50.0 15.48 0.0 40.87 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2519 4133 3.559655 GCCATTTTTCTGTTTGGTTGGTC 59.44 43.478 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 38 1.332889 ATCAGAGGTCATGGCAGCGA 61.333 55.000 0.00 0.00 0.00 4.93
265 281 1.067669 CTGCGTGGATCTTGCTAGCTA 59.932 52.381 17.23 7.59 0.00 3.32
393 411 1.227999 TGCAGTAGCGCAGGTCAAAC 61.228 55.000 11.47 0.00 46.23 2.93
607 626 0.893270 TAATTTGTGCGGCAGTGGCT 60.893 50.000 15.48 0.00 40.87 4.75
608 627 1.747325 AATTTGTGCGGCAGTGGCTT 61.747 50.000 15.48 0.00 40.87 4.35
964 984 6.046593 TGTTAGCCGGTATTTTCATAGAGTG 58.953 40.000 1.90 0.00 0.00 3.51
1320 2799 6.319658 CCTTGAGCTATTTCTTTGCTGGAATA 59.680 38.462 0.00 0.00 37.16 1.75
1398 2879 6.694447 AGCTTTTTCATGCATTATCACTTGT 58.306 32.000 0.00 0.00 0.00 3.16
1399 2880 6.588756 AGCTTTTTCATGCATTATCACTTGTG 59.411 34.615 0.00 0.00 0.00 3.33
1490 3034 9.909644 ATGAGCTTTTTCATGCATTATATCTTC 57.090 29.630 0.00 0.00 36.48 2.87
1494 3070 7.115947 GCTTTTTCATGCATTATATCTTCCTGC 59.884 37.037 0.00 0.00 0.00 4.85
1758 3334 2.827642 GCTGCTGCCCCTCATGAC 60.828 66.667 3.85 0.00 0.00 3.06
1917 3493 0.254747 TTATTAGCAGCGCCAACCCT 59.745 50.000 2.29 0.00 0.00 4.34
2334 3947 7.765360 TCACTTGCTGAAATTTGTTCTTTCATT 59.235 29.630 0.00 0.00 40.69 2.57
2337 3950 7.703298 TGCTGAAATTTGTTCTTTCATTCAG 57.297 32.000 0.00 7.95 40.69 3.02
2389 4002 9.309516 CATGCATTCTAACTTGCTGAAATTTAT 57.690 29.630 0.00 0.00 39.60 1.40
2519 4133 2.817258 TGAAAAATGGCTAACCTCACCG 59.183 45.455 0.00 0.00 36.63 4.94
2593 4208 7.014988 ACCAAACAAAACATGGGCTAATATT 57.985 32.000 0.00 0.00 38.58 1.28
2599 4214 7.951591 ACAAAACATGGGCTAATATTATCCAC 58.048 34.615 15.49 7.12 0.00 4.02
2610 4225 7.425606 GCTAATATTATCCACCAACCAAACAG 58.574 38.462 0.00 0.00 0.00 3.16
2689 4305 3.134458 CCTTCTATCCAAACGCATCCTC 58.866 50.000 0.00 0.00 0.00 3.71
2690 4306 2.509052 TCTATCCAAACGCATCCTCG 57.491 50.000 0.00 0.00 0.00 4.63
2691 4307 1.068588 TCTATCCAAACGCATCCTCGG 59.931 52.381 0.00 0.00 0.00 4.63
2692 4308 1.068588 CTATCCAAACGCATCCTCGGA 59.931 52.381 0.00 0.00 0.00 4.55
2693 4309 0.469917 ATCCAAACGCATCCTCGGAT 59.530 50.000 0.00 0.00 34.81 4.18
2694 4310 0.251916 TCCAAACGCATCCTCGGATT 59.748 50.000 0.00 0.00 31.62 3.01
2695 4311 1.094785 CCAAACGCATCCTCGGATTT 58.905 50.000 0.00 0.00 31.62 2.17
2696 4312 1.202177 CCAAACGCATCCTCGGATTTG 60.202 52.381 0.00 0.00 31.62 2.32
2697 4313 1.094785 AAACGCATCCTCGGATTTGG 58.905 50.000 0.00 0.00 31.62 3.28
2698 4314 0.035439 AACGCATCCTCGGATTTGGT 60.035 50.000 0.00 0.00 31.62 3.67
2699 4315 0.035439 ACGCATCCTCGGATTTGGTT 60.035 50.000 0.00 0.00 31.62 3.67
2700 4316 1.094785 CGCATCCTCGGATTTGGTTT 58.905 50.000 0.00 0.00 31.62 3.27
2701 4317 2.285083 CGCATCCTCGGATTTGGTTTA 58.715 47.619 0.00 0.00 31.62 2.01
2702 4318 2.680841 CGCATCCTCGGATTTGGTTTAA 59.319 45.455 0.00 0.00 31.62 1.52
2703 4319 3.486875 CGCATCCTCGGATTTGGTTTAAC 60.487 47.826 0.00 0.00 31.62 2.01
2704 4320 3.486875 GCATCCTCGGATTTGGTTTAACG 60.487 47.826 0.00 0.00 31.62 3.18
2705 4321 3.681593 TCCTCGGATTTGGTTTAACGA 57.318 42.857 0.00 0.00 0.00 3.85
2706 4322 3.592059 TCCTCGGATTTGGTTTAACGAG 58.408 45.455 0.00 0.00 45.13 4.18
2707 4323 2.095372 CCTCGGATTTGGTTTAACGAGC 59.905 50.000 0.00 0.00 44.45 5.03
2708 4324 2.739913 CTCGGATTTGGTTTAACGAGCA 59.260 45.455 0.00 0.00 40.80 4.26
2709 4325 3.340034 TCGGATTTGGTTTAACGAGCAT 58.660 40.909 0.00 0.00 0.00 3.79
2710 4326 3.372822 TCGGATTTGGTTTAACGAGCATC 59.627 43.478 0.00 0.00 0.00 3.91
2711 4327 3.374058 CGGATTTGGTTTAACGAGCATCT 59.626 43.478 0.00 0.00 0.00 2.90
2712 4328 4.142687 CGGATTTGGTTTAACGAGCATCTT 60.143 41.667 0.00 0.00 0.00 2.40
2713 4329 5.332707 GGATTTGGTTTAACGAGCATCTTC 58.667 41.667 0.00 0.00 0.00 2.87
2714 4330 5.123979 GGATTTGGTTTAACGAGCATCTTCT 59.876 40.000 0.00 0.00 0.00 2.85
2715 4331 5.607119 TTTGGTTTAACGAGCATCTTCTC 57.393 39.130 0.00 0.00 0.00 2.87
2716 4332 4.265904 TGGTTTAACGAGCATCTTCTCA 57.734 40.909 0.00 0.00 33.41 3.27
2717 4333 4.245660 TGGTTTAACGAGCATCTTCTCAG 58.754 43.478 0.00 0.00 33.41 3.35
2718 4334 4.021456 TGGTTTAACGAGCATCTTCTCAGA 60.021 41.667 0.00 0.00 33.41 3.27
2719 4335 4.564769 GGTTTAACGAGCATCTTCTCAGAG 59.435 45.833 0.00 0.00 33.41 3.35
2720 4336 5.403246 GTTTAACGAGCATCTTCTCAGAGA 58.597 41.667 0.00 0.00 33.41 3.10
2721 4337 3.781079 AACGAGCATCTTCTCAGAGAG 57.219 47.619 0.00 0.00 33.41 3.20
2722 4338 1.405105 ACGAGCATCTTCTCAGAGAGC 59.595 52.381 0.00 0.64 35.30 4.09
2723 4339 1.404748 CGAGCATCTTCTCAGAGAGCA 59.595 52.381 11.02 0.00 36.77 4.26
2724 4340 2.542205 CGAGCATCTTCTCAGAGAGCAG 60.542 54.545 11.02 3.00 36.77 4.24
2725 4341 2.428171 GAGCATCTTCTCAGAGAGCAGT 59.572 50.000 11.02 0.00 36.77 4.40
2726 4342 2.166870 AGCATCTTCTCAGAGAGCAGTG 59.833 50.000 11.02 6.14 36.77 3.66
2727 4343 2.542597 CATCTTCTCAGAGAGCAGTGC 58.457 52.381 7.13 7.13 30.36 4.40
2728 4344 1.625511 TCTTCTCAGAGAGCAGTGCA 58.374 50.000 19.20 0.00 0.00 4.57
2729 4345 1.545136 TCTTCTCAGAGAGCAGTGCAG 59.455 52.381 19.20 4.60 0.00 4.41
2730 4346 0.607112 TTCTCAGAGAGCAGTGCAGG 59.393 55.000 19.20 1.49 0.00 4.85
2731 4347 0.541530 TCTCAGAGAGCAGTGCAGGT 60.542 55.000 19.20 0.00 0.00 4.00
2732 4348 0.390078 CTCAGAGAGCAGTGCAGGTG 60.390 60.000 19.20 9.03 0.00 4.00
2733 4349 2.033755 CAGAGAGCAGTGCAGGTGC 61.034 63.158 19.20 12.23 41.54 5.01
2748 4364 2.532186 GTGCAGCACACGAGATTGA 58.468 52.632 21.22 0.00 40.07 2.57
2749 4365 0.441533 GTGCAGCACACGAGATTGAG 59.558 55.000 21.22 0.00 40.07 3.02
2750 4366 0.318120 TGCAGCACACGAGATTGAGA 59.682 50.000 0.00 0.00 0.00 3.27
2751 4367 1.270252 TGCAGCACACGAGATTGAGAA 60.270 47.619 0.00 0.00 0.00 2.87
2752 4368 1.800586 GCAGCACACGAGATTGAGAAA 59.199 47.619 0.00 0.00 0.00 2.52
2753 4369 2.224079 GCAGCACACGAGATTGAGAAAA 59.776 45.455 0.00 0.00 0.00 2.29
2754 4370 3.303990 GCAGCACACGAGATTGAGAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
2755 4371 4.614535 GCAGCACACGAGATTGAGAAAAAT 60.615 41.667 0.00 0.00 0.00 1.82
2756 4372 5.084722 CAGCACACGAGATTGAGAAAAATC 58.915 41.667 0.00 0.00 36.91 2.17
2757 4373 4.756642 AGCACACGAGATTGAGAAAAATCA 59.243 37.500 0.00 0.00 38.74 2.57
2758 4374 5.239306 AGCACACGAGATTGAGAAAAATCAA 59.761 36.000 0.00 0.00 43.04 2.57
2759 4375 5.340667 GCACACGAGATTGAGAAAAATCAAC 59.659 40.000 0.00 0.00 41.76 3.18
2760 4376 6.429624 CACACGAGATTGAGAAAAATCAACA 58.570 36.000 0.00 0.00 41.76 3.33
2761 4377 6.358030 CACACGAGATTGAGAAAAATCAACAC 59.642 38.462 0.00 0.00 41.76 3.32
2762 4378 5.853282 CACGAGATTGAGAAAAATCAACACC 59.147 40.000 0.00 0.00 41.76 4.16
2763 4379 5.048713 ACGAGATTGAGAAAAATCAACACCC 60.049 40.000 0.00 0.00 41.76 4.61
2764 4380 5.048782 CGAGATTGAGAAAAATCAACACCCA 60.049 40.000 0.27 0.00 41.76 4.51
2765 4381 6.089249 AGATTGAGAAAAATCAACACCCAC 57.911 37.500 0.27 0.00 41.76 4.61
2766 4382 3.980646 TGAGAAAAATCAACACCCACG 57.019 42.857 0.00 0.00 0.00 4.94
2767 4383 2.034053 TGAGAAAAATCAACACCCACGC 59.966 45.455 0.00 0.00 0.00 5.34
2768 4384 1.339929 AGAAAAATCAACACCCACGCC 59.660 47.619 0.00 0.00 0.00 5.68
2769 4385 0.031449 AAAAATCAACACCCACGCCG 59.969 50.000 0.00 0.00 0.00 6.46
2770 4386 1.104577 AAAATCAACACCCACGCCGT 61.105 50.000 0.00 0.00 0.00 5.68
2771 4387 1.512156 AAATCAACACCCACGCCGTC 61.512 55.000 0.00 0.00 0.00 4.79
2772 4388 3.894547 ATCAACACCCACGCCGTCC 62.895 63.158 0.00 0.00 0.00 4.79
2776 4392 4.752879 CACCCACGCCGTCCGAAT 62.753 66.667 0.00 0.00 41.02 3.34
2777 4393 4.446413 ACCCACGCCGTCCGAATC 62.446 66.667 0.00 0.00 41.02 2.52
2779 4395 4.485834 CCACGCCGTCCGAATCGA 62.486 66.667 3.36 0.00 41.02 3.59
2780 4396 2.278596 CACGCCGTCCGAATCGAT 60.279 61.111 3.36 0.00 41.02 3.59
2781 4397 2.278596 ACGCCGTCCGAATCGATG 60.279 61.111 3.36 0.00 41.02 3.84
2782 4398 2.025584 CGCCGTCCGAATCGATGA 59.974 61.111 3.36 0.00 40.02 2.92
2783 4399 2.011349 CGCCGTCCGAATCGATGAG 61.011 63.158 3.36 0.00 40.02 2.90
2784 4400 2.303676 GCCGTCCGAATCGATGAGC 61.304 63.158 3.36 0.00 0.00 4.26
2785 4401 1.065764 CCGTCCGAATCGATGAGCA 59.934 57.895 3.36 0.00 0.00 4.26
2786 4402 0.936764 CCGTCCGAATCGATGAGCAG 60.937 60.000 3.36 0.00 0.00 4.24
2787 4403 1.543941 CGTCCGAATCGATGAGCAGC 61.544 60.000 3.36 0.00 0.00 5.25
2788 4404 1.299392 TCCGAATCGATGAGCAGCG 60.299 57.895 3.36 1.16 42.20 5.18
2789 4405 2.305853 CCGAATCGATGAGCAGCGG 61.306 63.158 3.36 2.29 41.05 5.52
2790 4406 2.934428 GAATCGATGAGCAGCGGC 59.066 61.111 8.33 0.00 41.05 6.53
2848 4464 4.827087 CCGAGTGGCAGCGCATCT 62.827 66.667 11.47 0.00 0.00 2.90
2849 4465 2.104928 CGAGTGGCAGCGCATCTA 59.895 61.111 11.47 0.00 0.00 1.98
2850 4466 2.233654 CGAGTGGCAGCGCATCTAC 61.234 63.158 11.47 8.83 0.00 2.59
2851 4467 2.202797 AGTGGCAGCGCATCTACG 60.203 61.111 11.47 0.00 0.00 3.51
2852 4468 2.202743 GTGGCAGCGCATCTACGA 60.203 61.111 11.47 0.00 34.06 3.43
2853 4469 2.202743 TGGCAGCGCATCTACGAC 60.203 61.111 11.47 0.00 34.06 4.34
2854 4470 2.962253 GGCAGCGCATCTACGACC 60.962 66.667 11.47 0.00 34.06 4.79
2855 4471 3.323136 GCAGCGCATCTACGACCG 61.323 66.667 11.47 0.00 34.06 4.79
2856 4472 2.655364 CAGCGCATCTACGACCGG 60.655 66.667 11.47 0.00 34.06 5.28
2857 4473 3.900892 AGCGCATCTACGACCGGG 61.901 66.667 11.47 0.00 34.06 5.73
2858 4474 4.203076 GCGCATCTACGACCGGGT 62.203 66.667 6.32 0.00 34.06 5.28
2859 4475 2.025727 CGCATCTACGACCGGGTC 59.974 66.667 17.38 17.38 34.06 4.46
2913 4529 2.360350 CGCAACAGGACCCAGCAT 60.360 61.111 0.00 0.00 0.00 3.79
2914 4530 2.693762 CGCAACAGGACCCAGCATG 61.694 63.158 0.00 0.00 0.00 4.06
2915 4531 1.303561 GCAACAGGACCCAGCATGA 60.304 57.895 0.00 0.00 39.69 3.07
2916 4532 1.310933 GCAACAGGACCCAGCATGAG 61.311 60.000 0.00 0.00 39.69 2.90
2917 4533 0.037303 CAACAGGACCCAGCATGAGT 59.963 55.000 0.00 0.00 39.69 3.41
2918 4534 0.773644 AACAGGACCCAGCATGAGTT 59.226 50.000 0.00 0.00 39.69 3.01
2919 4535 0.326264 ACAGGACCCAGCATGAGTTC 59.674 55.000 0.00 0.00 39.69 3.01
2920 4536 0.617413 CAGGACCCAGCATGAGTTCT 59.383 55.000 0.00 0.00 39.69 3.01
2921 4537 0.617413 AGGACCCAGCATGAGTTCTG 59.383 55.000 0.00 0.00 39.69 3.02
2925 4541 3.165606 CCAGCATGAGTTCTGGGAC 57.834 57.895 8.75 0.00 44.64 4.46
2926 4542 0.742281 CCAGCATGAGTTCTGGGACG 60.742 60.000 8.75 0.00 44.64 4.79
2927 4543 1.078848 AGCATGAGTTCTGGGACGC 60.079 57.895 0.00 0.00 0.00 5.19
2928 4544 2.109126 GCATGAGTTCTGGGACGCC 61.109 63.158 0.00 0.00 0.00 5.68
2929 4545 1.450312 CATGAGTTCTGGGACGCCC 60.450 63.158 7.87 7.87 45.71 6.13
2939 4555 4.814294 GGACGCCCGCGACAAGAT 62.814 66.667 17.16 0.00 42.83 2.40
2940 4556 3.255379 GACGCCCGCGACAAGATC 61.255 66.667 17.16 0.00 42.83 2.75
2941 4557 3.982372 GACGCCCGCGACAAGATCA 62.982 63.158 17.16 0.00 42.83 2.92
2942 4558 2.813474 CGCCCGCGACAAGATCAA 60.813 61.111 8.23 0.00 42.83 2.57
2943 4559 2.785258 GCCCGCGACAAGATCAAC 59.215 61.111 8.23 0.00 0.00 3.18
2944 4560 2.750888 GCCCGCGACAAGATCAACC 61.751 63.158 8.23 0.00 0.00 3.77
2945 4561 1.375396 CCCGCGACAAGATCAACCA 60.375 57.895 8.23 0.00 0.00 3.67
2946 4562 1.635663 CCCGCGACAAGATCAACCAC 61.636 60.000 8.23 0.00 0.00 4.16
2947 4563 0.670546 CCGCGACAAGATCAACCACT 60.671 55.000 8.23 0.00 0.00 4.00
2948 4564 0.716108 CGCGACAAGATCAACCACTC 59.284 55.000 0.00 0.00 0.00 3.51
2949 4565 1.079503 GCGACAAGATCAACCACTCC 58.920 55.000 0.00 0.00 0.00 3.85
2950 4566 1.726853 CGACAAGATCAACCACTCCC 58.273 55.000 0.00 0.00 0.00 4.30
2951 4567 1.726853 GACAAGATCAACCACTCCCG 58.273 55.000 0.00 0.00 0.00 5.14
2952 4568 0.321653 ACAAGATCAACCACTCCCGC 60.322 55.000 0.00 0.00 0.00 6.13
2953 4569 1.026718 CAAGATCAACCACTCCCGCC 61.027 60.000 0.00 0.00 0.00 6.13
2954 4570 1.201429 AAGATCAACCACTCCCGCCT 61.201 55.000 0.00 0.00 0.00 5.52
2955 4571 1.153349 GATCAACCACTCCCGCCTC 60.153 63.158 0.00 0.00 0.00 4.70
2956 4572 2.595009 GATCAACCACTCCCGCCTCC 62.595 65.000 0.00 0.00 0.00 4.30
2957 4573 3.636231 CAACCACTCCCGCCTCCA 61.636 66.667 0.00 0.00 0.00 3.86
2958 4574 3.637273 AACCACTCCCGCCTCCAC 61.637 66.667 0.00 0.00 0.00 4.02
2961 4577 4.087892 CACTCCCGCCTCCACCAG 62.088 72.222 0.00 0.00 0.00 4.00
2967 4583 3.941188 CGCCTCCACCAGGTGTGT 61.941 66.667 18.82 0.00 46.63 3.72
2968 4584 2.281761 GCCTCCACCAGGTGTGTG 60.282 66.667 18.82 10.29 45.61 3.82
2969 4585 2.818169 GCCTCCACCAGGTGTGTGA 61.818 63.158 18.82 7.78 45.61 3.58
2970 4586 2.069776 CCTCCACCAGGTGTGTGAT 58.930 57.895 18.82 0.00 43.85 3.06
2971 4587 0.401738 CCTCCACCAGGTGTGTGATT 59.598 55.000 18.82 0.00 43.85 2.57
2972 4588 1.611673 CCTCCACCAGGTGTGTGATTC 60.612 57.143 18.82 0.00 43.85 2.52
2973 4589 1.072173 CTCCACCAGGTGTGTGATTCA 59.928 52.381 18.82 0.00 43.85 2.57
2974 4590 1.704628 TCCACCAGGTGTGTGATTCAT 59.295 47.619 18.82 0.00 43.85 2.57
2975 4591 2.086869 CCACCAGGTGTGTGATTCATC 58.913 52.381 18.82 0.00 43.85 2.92
2976 4592 1.733912 CACCAGGTGTGTGATTCATCG 59.266 52.381 11.99 0.00 40.26 3.84
2977 4593 1.339055 ACCAGGTGTGTGATTCATCGG 60.339 52.381 0.00 0.00 0.00 4.18
2978 4594 1.066215 CCAGGTGTGTGATTCATCGGA 60.066 52.381 0.00 0.00 0.00 4.55
2979 4595 2.002586 CAGGTGTGTGATTCATCGGAC 58.997 52.381 0.00 0.00 0.00 4.79
2980 4596 1.066143 AGGTGTGTGATTCATCGGACC 60.066 52.381 0.00 0.00 0.00 4.46
2981 4597 0.999406 GTGTGTGATTCATCGGACCG 59.001 55.000 7.84 7.84 0.00 4.79
2982 4598 0.739462 TGTGTGATTCATCGGACCGC 60.739 55.000 9.66 0.00 0.00 5.68
2983 4599 0.460284 GTGTGATTCATCGGACCGCT 60.460 55.000 9.66 0.00 0.00 5.52
2984 4600 0.179111 TGTGATTCATCGGACCGCTC 60.179 55.000 9.66 1.41 0.00 5.03
2985 4601 0.876342 GTGATTCATCGGACCGCTCC 60.876 60.000 9.66 0.00 0.00 4.70
2986 4602 1.043116 TGATTCATCGGACCGCTCCT 61.043 55.000 9.66 0.00 33.79 3.69
2987 4603 0.598680 GATTCATCGGACCGCTCCTG 60.599 60.000 9.66 4.20 33.79 3.86
2988 4604 1.330655 ATTCATCGGACCGCTCCTGT 61.331 55.000 9.66 0.00 33.79 4.00
2989 4605 1.945354 TTCATCGGACCGCTCCTGTC 61.945 60.000 9.66 0.00 33.79 3.51
2994 4610 3.701454 GACCGCTCCTGTCCTCTT 58.299 61.111 0.00 0.00 0.00 2.85
2995 4611 2.883572 GACCGCTCCTGTCCTCTTA 58.116 57.895 0.00 0.00 0.00 2.10
2996 4612 0.456628 GACCGCTCCTGTCCTCTTAC 59.543 60.000 0.00 0.00 0.00 2.34
2997 4613 1.313812 ACCGCTCCTGTCCTCTTACG 61.314 60.000 0.00 0.00 0.00 3.18
2998 4614 1.226717 CGCTCCTGTCCTCTTACGC 60.227 63.158 0.00 0.00 0.00 4.42
2999 4615 1.658686 CGCTCCTGTCCTCTTACGCT 61.659 60.000 0.00 0.00 0.00 5.07
3000 4616 0.533032 GCTCCTGTCCTCTTACGCTT 59.467 55.000 0.00 0.00 0.00 4.68
3001 4617 1.749634 GCTCCTGTCCTCTTACGCTTA 59.250 52.381 0.00 0.00 0.00 3.09
3002 4618 2.223618 GCTCCTGTCCTCTTACGCTTAG 60.224 54.545 0.00 0.00 0.00 2.18
3003 4619 2.359531 CTCCTGTCCTCTTACGCTTAGG 59.640 54.545 0.00 0.00 0.00 2.69
3004 4620 1.409427 CCTGTCCTCTTACGCTTAGGG 59.591 57.143 0.00 0.00 0.00 3.53
3005 4621 2.100989 CTGTCCTCTTACGCTTAGGGT 58.899 52.381 7.20 7.20 0.00 4.34
3006 4622 2.496470 CTGTCCTCTTACGCTTAGGGTT 59.504 50.000 7.35 0.00 0.00 4.11
3007 4623 2.901839 TGTCCTCTTACGCTTAGGGTTT 59.098 45.455 7.35 0.00 0.00 3.27
3008 4624 3.325716 TGTCCTCTTACGCTTAGGGTTTT 59.674 43.478 7.35 0.00 0.00 2.43
3009 4625 3.931468 GTCCTCTTACGCTTAGGGTTTTC 59.069 47.826 7.35 0.00 0.00 2.29
3010 4626 3.836562 TCCTCTTACGCTTAGGGTTTTCT 59.163 43.478 7.35 0.00 0.00 2.52
3011 4627 4.081807 TCCTCTTACGCTTAGGGTTTTCTC 60.082 45.833 7.35 0.00 0.00 2.87
3012 4628 4.081586 CCTCTTACGCTTAGGGTTTTCTCT 60.082 45.833 7.35 0.00 0.00 3.10
3013 4629 5.479124 TCTTACGCTTAGGGTTTTCTCTT 57.521 39.130 7.35 0.00 0.00 2.85
3014 4630 5.235516 TCTTACGCTTAGGGTTTTCTCTTG 58.764 41.667 7.35 0.00 0.00 3.02
3015 4631 2.779506 ACGCTTAGGGTTTTCTCTTGG 58.220 47.619 0.00 0.00 0.00 3.61
3016 4632 2.084546 CGCTTAGGGTTTTCTCTTGGG 58.915 52.381 0.00 0.00 0.00 4.12
3017 4633 1.819288 GCTTAGGGTTTTCTCTTGGGC 59.181 52.381 0.00 0.00 0.00 5.36
3018 4634 2.555448 GCTTAGGGTTTTCTCTTGGGCT 60.555 50.000 0.00 0.00 0.00 5.19
3019 4635 3.767711 CTTAGGGTTTTCTCTTGGGCTT 58.232 45.455 0.00 0.00 0.00 4.35
3020 4636 2.294449 AGGGTTTTCTCTTGGGCTTC 57.706 50.000 0.00 0.00 0.00 3.86
3021 4637 1.203063 AGGGTTTTCTCTTGGGCTTCC 60.203 52.381 0.00 0.00 0.00 3.46
3022 4638 1.257743 GGTTTTCTCTTGGGCTTCCC 58.742 55.000 0.00 0.00 45.71 3.97
3023 4639 1.203063 GGTTTTCTCTTGGGCTTCCCT 60.203 52.381 3.27 0.00 45.70 4.20
3024 4640 1.889170 GTTTTCTCTTGGGCTTCCCTG 59.111 52.381 3.27 0.00 45.70 4.45
3025 4641 0.251341 TTTCTCTTGGGCTTCCCTGC 60.251 55.000 3.27 0.00 45.70 4.85
3026 4642 2.437359 CTCTTGGGCTTCCCTGCG 60.437 66.667 3.27 0.00 45.70 5.18
3027 4643 4.722700 TCTTGGGCTTCCCTGCGC 62.723 66.667 0.00 0.00 45.70 6.09
3032 4648 4.496336 GGCTTCCCTGCGCCTGAT 62.496 66.667 4.18 0.00 42.98 2.90
3033 4649 2.439156 GCTTCCCTGCGCCTGATT 60.439 61.111 4.18 0.00 0.00 2.57
3034 4650 2.768492 GCTTCCCTGCGCCTGATTG 61.768 63.158 4.18 0.00 0.00 2.67
3035 4651 1.078214 CTTCCCTGCGCCTGATTGA 60.078 57.895 4.18 0.00 0.00 2.57
3036 4652 0.465097 CTTCCCTGCGCCTGATTGAT 60.465 55.000 4.18 0.00 0.00 2.57
3037 4653 0.749091 TTCCCTGCGCCTGATTGATG 60.749 55.000 4.18 0.00 0.00 3.07
3038 4654 1.452651 CCCTGCGCCTGATTGATGT 60.453 57.895 4.18 0.00 0.00 3.06
3039 4655 1.442526 CCCTGCGCCTGATTGATGTC 61.443 60.000 4.18 0.00 0.00 3.06
3040 4656 0.463295 CCTGCGCCTGATTGATGTCT 60.463 55.000 4.18 0.00 0.00 3.41
3041 4657 1.376543 CTGCGCCTGATTGATGTCTT 58.623 50.000 4.18 0.00 0.00 3.01
3042 4658 2.554142 CTGCGCCTGATTGATGTCTTA 58.446 47.619 4.18 0.00 0.00 2.10
3043 4659 3.136763 CTGCGCCTGATTGATGTCTTAT 58.863 45.455 4.18 0.00 0.00 1.73
3044 4660 2.874086 TGCGCCTGATTGATGTCTTATG 59.126 45.455 4.18 0.00 0.00 1.90
3045 4661 2.874701 GCGCCTGATTGATGTCTTATGT 59.125 45.455 0.00 0.00 0.00 2.29
3046 4662 3.313526 GCGCCTGATTGATGTCTTATGTT 59.686 43.478 0.00 0.00 0.00 2.71
3047 4663 4.553547 GCGCCTGATTGATGTCTTATGTTC 60.554 45.833 0.00 0.00 0.00 3.18
3048 4664 4.813161 CGCCTGATTGATGTCTTATGTTCT 59.187 41.667 0.00 0.00 0.00 3.01
3049 4665 5.050499 CGCCTGATTGATGTCTTATGTTCTC 60.050 44.000 0.00 0.00 0.00 2.87
3050 4666 5.819379 GCCTGATTGATGTCTTATGTTCTCA 59.181 40.000 0.00 0.00 0.00 3.27
3051 4667 6.485984 GCCTGATTGATGTCTTATGTTCTCAT 59.514 38.462 0.00 0.00 38.00 2.90
3052 4668 7.307870 GCCTGATTGATGTCTTATGTTCTCATC 60.308 40.741 0.00 0.00 35.70 2.92
3053 4669 7.172875 CCTGATTGATGTCTTATGTTCTCATCC 59.827 40.741 0.00 0.00 35.47 3.51
3054 4670 6.994496 TGATTGATGTCTTATGTTCTCATCCC 59.006 38.462 0.00 0.00 35.47 3.85
3055 4671 4.948847 TGATGTCTTATGTTCTCATCCCG 58.051 43.478 0.00 0.00 35.47 5.14
3056 4672 3.819564 TGTCTTATGTTCTCATCCCGG 57.180 47.619 0.00 0.00 35.70 5.73
3057 4673 3.371034 TGTCTTATGTTCTCATCCCGGA 58.629 45.455 0.73 0.00 35.70 5.14
3058 4674 3.772572 TGTCTTATGTTCTCATCCCGGAA 59.227 43.478 0.73 0.00 35.70 4.30
3059 4675 4.141937 TGTCTTATGTTCTCATCCCGGAAG 60.142 45.833 0.73 0.00 35.70 3.46
3060 4676 3.388024 TCTTATGTTCTCATCCCGGAAGG 59.612 47.826 0.73 0.00 42.27 3.46
3061 4677 1.416401 TATGTTCTCATCCCGGAAGGC 59.584 52.381 0.73 0.00 41.74 4.35
3062 4678 4.175953 TATGTTCTCATCCCGGAAGGCG 62.176 54.545 0.73 0.00 41.74 5.52
3078 4694 2.263852 CGGAGCTGAGCAGAAGCA 59.736 61.111 7.39 0.00 45.49 3.91
3079 4695 1.810441 CGGAGCTGAGCAGAAGCAG 60.810 63.158 7.39 0.00 45.49 4.24
3080 4696 1.449956 GGAGCTGAGCAGAAGCAGG 60.450 63.158 7.39 0.00 45.49 4.85
3081 4697 1.296068 GAGCTGAGCAGAAGCAGGT 59.704 57.895 7.39 0.00 44.66 4.00
3082 4698 1.003597 AGCTGAGCAGAAGCAGGTG 60.004 57.895 7.39 0.00 45.49 4.00
3083 4699 2.039405 GCTGAGCAGAAGCAGGTGG 61.039 63.158 0.00 0.00 45.49 4.61
3084 4700 1.376942 CTGAGCAGAAGCAGGTGGG 60.377 63.158 0.00 0.00 45.49 4.61
3085 4701 1.834856 CTGAGCAGAAGCAGGTGGGA 61.835 60.000 0.00 0.00 45.49 4.37
3086 4702 1.078567 GAGCAGAAGCAGGTGGGAG 60.079 63.158 0.00 0.00 45.49 4.30
3087 4703 2.045536 GCAGAAGCAGGTGGGAGG 60.046 66.667 0.00 0.00 41.58 4.30
3088 4704 2.045536 CAGAAGCAGGTGGGAGGC 60.046 66.667 0.00 0.00 0.00 4.70
3089 4705 3.710722 AGAAGCAGGTGGGAGGCG 61.711 66.667 0.00 0.00 0.00 5.52
3090 4706 4.785453 GAAGCAGGTGGGAGGCGG 62.785 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 4.363990 CCTGTGCTGACCGTCGCT 62.364 66.667 13.80 0.00 0.00 4.93
35 38 2.134287 ACTCACCTGTGCTGACCGT 61.134 57.895 0.00 0.00 0.00 4.83
189 205 1.563435 CGCACAACACCTGCTCTCAG 61.563 60.000 0.00 0.00 40.02 3.35
265 281 0.038892 CGAAGCAAGTTTGGCTGCAT 60.039 50.000 0.50 0.00 41.66 3.96
383 401 1.444119 TTGACCTGCGTTTGACCTGC 61.444 55.000 0.00 0.00 0.00 4.85
485 504 4.160439 CCTCTGTCAAGCAGTACATAGGAA 59.840 45.833 9.71 0.00 45.23 3.36
579 598 5.048364 ACTGCCGCACAAATTAACATCTTTA 60.048 36.000 0.00 0.00 0.00 1.85
964 984 0.179119 GCTCACCAATTGCATGGAGC 60.179 55.000 13.35 17.18 43.54 4.70
1320 2799 7.259088 ACTTATTCCAGTAGTGAATGGAGTT 57.741 36.000 0.00 0.00 46.01 3.01
1370 2851 7.553334 AGTGATAATGCATGAAAAAGCTCATT 58.447 30.769 0.00 0.00 33.66 2.57
1371 2852 7.108841 AGTGATAATGCATGAAAAAGCTCAT 57.891 32.000 0.00 0.00 36.45 2.90
1398 2879 6.374333 GGAAATGGAGTATAAAGAAGTGCACA 59.626 38.462 21.04 0.00 0.00 4.57
1399 2880 6.599638 AGGAAATGGAGTATAAAGAAGTGCAC 59.400 38.462 9.40 9.40 0.00 4.57
1490 3034 7.548196 AATGCATGAAAGAATAAATTGCAGG 57.452 32.000 0.00 0.00 41.36 4.85
2334 3947 9.066892 AGAACAAATTTCAGCAAGTTATACTGA 57.933 29.630 0.00 0.00 38.62 3.41
2519 4133 3.559655 GCCATTTTTCTGTTTGGTTGGTC 59.440 43.478 0.00 0.00 0.00 4.02
2557 4171 8.507249 CATGTTTTGTTTGGTTTGAAGGTTAAA 58.493 29.630 0.00 0.00 0.00 1.52
2593 4208 6.739331 ATTTTTCTGTTTGGTTGGTGGATA 57.261 33.333 0.00 0.00 0.00 2.59
2599 4214 9.150348 GATAACCATATTTTTCTGTTTGGTTGG 57.850 33.333 13.80 0.00 44.73 3.77
2610 4225 9.301897 AGCAGGATAAGGATAACCATATTTTTC 57.698 33.333 0.00 0.00 38.94 2.29
2689 4305 3.374058 AGATGCTCGTTAAACCAAATCCG 59.626 43.478 0.00 0.00 0.00 4.18
2690 4306 4.965119 AGATGCTCGTTAAACCAAATCC 57.035 40.909 0.00 0.00 0.00 3.01
2691 4307 6.128282 TGAGAAGATGCTCGTTAAACCAAATC 60.128 38.462 0.00 0.00 37.73 2.17
2692 4308 5.705441 TGAGAAGATGCTCGTTAAACCAAAT 59.295 36.000 0.00 0.00 37.73 2.32
2693 4309 5.060506 TGAGAAGATGCTCGTTAAACCAAA 58.939 37.500 0.00 0.00 37.73 3.28
2694 4310 4.637276 TGAGAAGATGCTCGTTAAACCAA 58.363 39.130 0.00 0.00 37.73 3.67
2695 4311 4.021456 TCTGAGAAGATGCTCGTTAAACCA 60.021 41.667 0.00 0.00 37.73 3.67
2696 4312 4.495422 TCTGAGAAGATGCTCGTTAAACC 58.505 43.478 0.00 0.00 37.73 3.27
2697 4313 5.403246 TCTCTGAGAAGATGCTCGTTAAAC 58.597 41.667 4.57 0.00 37.73 2.01
2698 4314 5.644977 TCTCTGAGAAGATGCTCGTTAAA 57.355 39.130 4.57 0.00 37.73 1.52
2699 4315 4.439426 GCTCTCTGAGAAGATGCTCGTTAA 60.439 45.833 8.95 0.00 37.73 2.01
2700 4316 3.066064 GCTCTCTGAGAAGATGCTCGTTA 59.934 47.826 8.95 0.00 37.73 3.18
2701 4317 2.159254 GCTCTCTGAGAAGATGCTCGTT 60.159 50.000 8.95 0.00 37.73 3.85
2702 4318 1.405105 GCTCTCTGAGAAGATGCTCGT 59.595 52.381 8.95 0.00 37.73 4.18
2703 4319 1.404748 TGCTCTCTGAGAAGATGCTCG 59.595 52.381 8.95 0.00 37.73 5.03
2704 4320 2.428171 ACTGCTCTCTGAGAAGATGCTC 59.572 50.000 8.95 0.00 37.52 4.26
2705 4321 2.166870 CACTGCTCTCTGAGAAGATGCT 59.833 50.000 8.95 0.00 37.52 3.79
2706 4322 2.542597 CACTGCTCTCTGAGAAGATGC 58.457 52.381 8.95 9.02 37.52 3.91
2707 4323 2.094130 TGCACTGCTCTCTGAGAAGATG 60.094 50.000 8.95 6.24 37.52 2.90
2708 4324 2.166870 CTGCACTGCTCTCTGAGAAGAT 59.833 50.000 8.95 0.00 37.52 2.40
2709 4325 1.545136 CTGCACTGCTCTCTGAGAAGA 59.455 52.381 8.95 0.00 37.52 2.87
2710 4326 1.404449 CCTGCACTGCTCTCTGAGAAG 60.404 57.143 8.95 6.81 40.99 2.85
2711 4327 0.607112 CCTGCACTGCTCTCTGAGAA 59.393 55.000 8.95 0.00 0.00 2.87
2712 4328 0.541530 ACCTGCACTGCTCTCTGAGA 60.542 55.000 7.24 7.24 0.00 3.27
2713 4329 0.390078 CACCTGCACTGCTCTCTGAG 60.390 60.000 1.98 0.00 0.00 3.35
2714 4330 1.670015 CACCTGCACTGCTCTCTGA 59.330 57.895 1.98 0.00 0.00 3.27
2715 4331 2.033755 GCACCTGCACTGCTCTCTG 61.034 63.158 1.98 0.00 41.59 3.35
2716 4332 2.346739 GCACCTGCACTGCTCTCT 59.653 61.111 1.98 0.00 41.59 3.10
2726 4342 3.720193 CTCGTGTGCTGCACCTGC 61.720 66.667 28.17 17.30 44.97 4.85
2727 4343 0.952497 AATCTCGTGTGCTGCACCTG 60.952 55.000 28.17 20.22 44.97 4.00
2728 4344 0.952497 CAATCTCGTGTGCTGCACCT 60.952 55.000 28.17 4.99 44.97 4.00
2729 4345 0.950555 TCAATCTCGTGTGCTGCACC 60.951 55.000 28.17 18.38 44.97 5.01
2730 4346 0.441533 CTCAATCTCGTGTGCTGCAC 59.558 55.000 25.15 25.15 44.36 4.57
2731 4347 0.318120 TCTCAATCTCGTGTGCTGCA 59.682 50.000 0.00 0.00 0.00 4.41
2732 4348 1.432514 TTCTCAATCTCGTGTGCTGC 58.567 50.000 0.00 0.00 0.00 5.25
2733 4349 4.472691 TTTTTCTCAATCTCGTGTGCTG 57.527 40.909 0.00 0.00 0.00 4.41
2734 4350 4.756642 TGATTTTTCTCAATCTCGTGTGCT 59.243 37.500 0.00 0.00 34.66 4.40
2735 4351 5.034554 TGATTTTTCTCAATCTCGTGTGC 57.965 39.130 0.00 0.00 34.66 4.57
2736 4352 6.358030 GTGTTGATTTTTCTCAATCTCGTGTG 59.642 38.462 0.00 0.00 37.47 3.82
2737 4353 6.430451 GTGTTGATTTTTCTCAATCTCGTGT 58.570 36.000 0.00 0.00 37.47 4.49
2738 4354 5.853282 GGTGTTGATTTTTCTCAATCTCGTG 59.147 40.000 0.00 0.00 37.47 4.35
2739 4355 5.048713 GGGTGTTGATTTTTCTCAATCTCGT 60.049 40.000 0.00 0.00 37.47 4.18
2740 4356 5.048782 TGGGTGTTGATTTTTCTCAATCTCG 60.049 40.000 0.00 0.00 37.47 4.04
2741 4357 6.152379 GTGGGTGTTGATTTTTCTCAATCTC 58.848 40.000 0.00 0.00 37.47 2.75
2742 4358 5.278463 CGTGGGTGTTGATTTTTCTCAATCT 60.278 40.000 0.00 0.00 37.47 2.40
2743 4359 4.917415 CGTGGGTGTTGATTTTTCTCAATC 59.083 41.667 0.00 0.00 37.47 2.67
2744 4360 4.795962 GCGTGGGTGTTGATTTTTCTCAAT 60.796 41.667 0.00 0.00 37.47 2.57
2745 4361 3.490078 GCGTGGGTGTTGATTTTTCTCAA 60.490 43.478 0.00 0.00 32.84 3.02
2746 4362 2.034053 GCGTGGGTGTTGATTTTTCTCA 59.966 45.455 0.00 0.00 0.00 3.27
2747 4363 2.607038 GGCGTGGGTGTTGATTTTTCTC 60.607 50.000 0.00 0.00 0.00 2.87
2748 4364 1.339929 GGCGTGGGTGTTGATTTTTCT 59.660 47.619 0.00 0.00 0.00 2.52
2749 4365 1.778334 GGCGTGGGTGTTGATTTTTC 58.222 50.000 0.00 0.00 0.00 2.29
2750 4366 0.031449 CGGCGTGGGTGTTGATTTTT 59.969 50.000 0.00 0.00 0.00 1.94
2751 4367 1.104577 ACGGCGTGGGTGTTGATTTT 61.105 50.000 13.76 0.00 0.00 1.82
2752 4368 1.512156 GACGGCGTGGGTGTTGATTT 61.512 55.000 21.19 0.00 0.00 2.17
2753 4369 1.964373 GACGGCGTGGGTGTTGATT 60.964 57.895 21.19 0.00 0.00 2.57
2754 4370 2.358247 GACGGCGTGGGTGTTGAT 60.358 61.111 21.19 0.00 0.00 2.57
2755 4371 4.612412 GGACGGCGTGGGTGTTGA 62.612 66.667 21.19 0.00 0.00 3.18
2759 4375 4.752879 ATTCGGACGGCGTGGGTG 62.753 66.667 21.19 3.91 0.00 4.61
2760 4376 4.446413 GATTCGGACGGCGTGGGT 62.446 66.667 21.19 1.62 0.00 4.51
2762 4378 3.768185 ATCGATTCGGACGGCGTGG 62.768 63.158 21.19 9.65 0.00 4.94
2763 4379 2.278596 ATCGATTCGGACGGCGTG 60.279 61.111 21.19 3.53 0.00 5.34
2764 4380 2.278596 CATCGATTCGGACGGCGT 60.279 61.111 14.65 14.65 0.00 5.68
2765 4381 2.011349 CTCATCGATTCGGACGGCG 61.011 63.158 4.80 4.80 0.00 6.46
2766 4382 2.303676 GCTCATCGATTCGGACGGC 61.304 63.158 6.18 3.14 0.00 5.68
2767 4383 0.936764 CTGCTCATCGATTCGGACGG 60.937 60.000 6.18 0.00 0.00 4.79
2768 4384 1.543941 GCTGCTCATCGATTCGGACG 61.544 60.000 6.18 0.00 0.00 4.79
2769 4385 1.543941 CGCTGCTCATCGATTCGGAC 61.544 60.000 6.18 0.00 0.00 4.79
2770 4386 1.299392 CGCTGCTCATCGATTCGGA 60.299 57.895 6.18 0.00 0.00 4.55
2771 4387 2.305853 CCGCTGCTCATCGATTCGG 61.306 63.158 6.18 0.00 0.00 4.30
2772 4388 2.936570 GCCGCTGCTCATCGATTCG 61.937 63.158 0.00 0.00 33.53 3.34
2773 4389 2.934428 GCCGCTGCTCATCGATTC 59.066 61.111 0.00 0.00 33.53 2.52
2774 4390 2.963854 CGCCGCTGCTCATCGATT 60.964 61.111 0.00 0.00 34.43 3.34
2775 4391 4.957684 CCGCCGCTGCTCATCGAT 62.958 66.667 0.00 0.00 34.43 3.59
2831 4447 3.430565 TAGATGCGCTGCCACTCGG 62.431 63.158 9.73 0.00 0.00 4.63
2832 4448 2.104928 TAGATGCGCTGCCACTCG 59.895 61.111 9.73 0.00 0.00 4.18
2833 4449 2.233654 CGTAGATGCGCTGCCACTC 61.234 63.158 9.73 0.00 0.00 3.51
2834 4450 2.202797 CGTAGATGCGCTGCCACT 60.203 61.111 9.73 3.36 0.00 4.00
2835 4451 2.202743 TCGTAGATGCGCTGCCAC 60.203 61.111 9.73 0.48 0.00 5.01
2836 4452 2.202743 GTCGTAGATGCGCTGCCA 60.203 61.111 9.73 0.00 40.67 4.92
2837 4453 2.962253 GGTCGTAGATGCGCTGCC 60.962 66.667 9.73 0.00 40.67 4.85
2838 4454 3.323136 CGGTCGTAGATGCGCTGC 61.323 66.667 9.73 0.00 40.67 5.25
2839 4455 2.655364 CCGGTCGTAGATGCGCTG 60.655 66.667 9.73 0.00 40.67 5.18
2840 4456 3.900892 CCCGGTCGTAGATGCGCT 61.901 66.667 9.73 0.00 40.67 5.92
2841 4457 4.203076 ACCCGGTCGTAGATGCGC 62.203 66.667 0.00 0.00 40.67 6.09
2842 4458 2.025727 GACCCGGTCGTAGATGCG 59.974 66.667 0.65 0.00 40.67 4.73
2896 4512 2.360350 ATGCTGGGTCCTGTTGCG 60.360 61.111 0.00 0.00 0.00 4.85
2897 4513 1.303561 TCATGCTGGGTCCTGTTGC 60.304 57.895 0.00 0.00 0.00 4.17
2898 4514 0.037303 ACTCATGCTGGGTCCTGTTG 59.963 55.000 0.00 0.00 0.00 3.33
2899 4515 0.773644 AACTCATGCTGGGTCCTGTT 59.226 50.000 0.00 0.00 25.77 3.16
2900 4516 0.326264 GAACTCATGCTGGGTCCTGT 59.674 55.000 0.00 0.00 25.77 4.00
2901 4517 0.617413 AGAACTCATGCTGGGTCCTG 59.383 55.000 0.00 0.00 25.77 3.86
2902 4518 0.617413 CAGAACTCATGCTGGGTCCT 59.383 55.000 0.00 0.00 25.77 3.85
2903 4519 0.393537 CCAGAACTCATGCTGGGTCC 60.394 60.000 8.75 0.00 46.24 4.46
2904 4520 3.165606 CCAGAACTCATGCTGGGTC 57.834 57.895 8.75 0.67 46.24 4.46
2908 4524 1.364626 GCGTCCCAGAACTCATGCTG 61.365 60.000 0.00 0.00 0.00 4.41
2909 4525 1.078848 GCGTCCCAGAACTCATGCT 60.079 57.895 0.00 0.00 0.00 3.79
2910 4526 2.109126 GGCGTCCCAGAACTCATGC 61.109 63.158 0.00 0.00 0.00 4.06
2911 4527 1.450312 GGGCGTCCCAGAACTCATG 60.450 63.158 9.72 0.00 44.65 3.07
2912 4528 2.990479 GGGCGTCCCAGAACTCAT 59.010 61.111 9.72 0.00 44.65 2.90
2913 4529 3.691342 CGGGCGTCCCAGAACTCA 61.691 66.667 14.17 0.00 45.83 3.41
2922 4538 4.814294 ATCTTGTCGCGGGCGTCC 62.814 66.667 13.21 0.00 40.74 4.79
2923 4539 3.255379 GATCTTGTCGCGGGCGTC 61.255 66.667 13.21 8.17 40.74 5.19
2924 4540 3.583276 TTGATCTTGTCGCGGGCGT 62.583 57.895 13.21 0.00 40.74 5.68
2925 4541 2.813474 TTGATCTTGTCGCGGGCG 60.813 61.111 6.13 6.74 41.35 6.13
2926 4542 2.750888 GGTTGATCTTGTCGCGGGC 61.751 63.158 6.13 0.00 0.00 6.13
2927 4543 1.375396 TGGTTGATCTTGTCGCGGG 60.375 57.895 6.13 0.00 0.00 6.13
2928 4544 0.670546 AGTGGTTGATCTTGTCGCGG 60.671 55.000 6.13 0.00 0.00 6.46
2929 4545 0.716108 GAGTGGTTGATCTTGTCGCG 59.284 55.000 0.00 0.00 0.00 5.87
2930 4546 1.079503 GGAGTGGTTGATCTTGTCGC 58.920 55.000 0.00 0.00 0.00 5.19
2931 4547 1.726853 GGGAGTGGTTGATCTTGTCG 58.273 55.000 0.00 0.00 0.00 4.35
2932 4548 1.726853 CGGGAGTGGTTGATCTTGTC 58.273 55.000 0.00 0.00 0.00 3.18
2933 4549 0.321653 GCGGGAGTGGTTGATCTTGT 60.322 55.000 0.00 0.00 0.00 3.16
2934 4550 1.026718 GGCGGGAGTGGTTGATCTTG 61.027 60.000 0.00 0.00 0.00 3.02
2935 4551 1.201429 AGGCGGGAGTGGTTGATCTT 61.201 55.000 0.00 0.00 0.00 2.40
2936 4552 1.613630 AGGCGGGAGTGGTTGATCT 60.614 57.895 0.00 0.00 0.00 2.75
2937 4553 1.153349 GAGGCGGGAGTGGTTGATC 60.153 63.158 0.00 0.00 0.00 2.92
2938 4554 2.670148 GGAGGCGGGAGTGGTTGAT 61.670 63.158 0.00 0.00 0.00 2.57
2939 4555 3.319198 GGAGGCGGGAGTGGTTGA 61.319 66.667 0.00 0.00 0.00 3.18
2940 4556 3.636231 TGGAGGCGGGAGTGGTTG 61.636 66.667 0.00 0.00 0.00 3.77
2941 4557 3.637273 GTGGAGGCGGGAGTGGTT 61.637 66.667 0.00 0.00 0.00 3.67
2944 4560 4.087892 CTGGTGGAGGCGGGAGTG 62.088 72.222 0.00 0.00 0.00 3.51
2957 4573 1.339055 CCGATGAATCACACACCTGGT 60.339 52.381 0.00 0.00 0.00 4.00
2958 4574 1.066215 TCCGATGAATCACACACCTGG 60.066 52.381 0.00 0.00 0.00 4.45
2959 4575 2.002586 GTCCGATGAATCACACACCTG 58.997 52.381 0.00 0.00 0.00 4.00
2960 4576 1.066143 GGTCCGATGAATCACACACCT 60.066 52.381 0.00 0.00 0.00 4.00
2961 4577 1.369625 GGTCCGATGAATCACACACC 58.630 55.000 0.00 0.00 0.00 4.16
2962 4578 0.999406 CGGTCCGATGAATCACACAC 59.001 55.000 4.91 0.00 0.00 3.82
2963 4579 0.739462 GCGGTCCGATGAATCACACA 60.739 55.000 17.49 0.00 0.00 3.72
2964 4580 0.460284 AGCGGTCCGATGAATCACAC 60.460 55.000 17.49 0.00 0.00 3.82
2965 4581 0.179111 GAGCGGTCCGATGAATCACA 60.179 55.000 17.49 0.00 0.00 3.58
2966 4582 0.876342 GGAGCGGTCCGATGAATCAC 60.876 60.000 19.39 0.00 31.37 3.06
2967 4583 1.441729 GGAGCGGTCCGATGAATCA 59.558 57.895 19.39 0.00 31.37 2.57
2968 4584 4.345337 GGAGCGGTCCGATGAATC 57.655 61.111 19.39 3.98 31.37 2.52
2977 4593 0.456628 GTAAGAGGACAGGAGCGGTC 59.543 60.000 5.93 5.93 34.52 4.79
2978 4594 1.313812 CGTAAGAGGACAGGAGCGGT 61.314 60.000 0.00 0.00 43.02 5.68
2979 4595 1.433879 CGTAAGAGGACAGGAGCGG 59.566 63.158 0.00 0.00 43.02 5.52
2980 4596 1.226717 GCGTAAGAGGACAGGAGCG 60.227 63.158 0.00 0.00 43.02 5.03
2981 4597 0.533032 AAGCGTAAGAGGACAGGAGC 59.467 55.000 0.00 0.00 43.02 4.70
2982 4598 2.359531 CCTAAGCGTAAGAGGACAGGAG 59.640 54.545 0.00 0.00 43.02 3.69
2983 4599 2.376109 CCTAAGCGTAAGAGGACAGGA 58.624 52.381 0.00 0.00 43.02 3.86
2984 4600 1.409427 CCCTAAGCGTAAGAGGACAGG 59.591 57.143 0.00 0.00 43.02 4.00
2985 4601 2.100989 ACCCTAAGCGTAAGAGGACAG 58.899 52.381 0.00 0.00 43.02 3.51
2986 4602 2.226962 ACCCTAAGCGTAAGAGGACA 57.773 50.000 0.00 0.00 43.02 4.02
2987 4603 3.606595 AAACCCTAAGCGTAAGAGGAC 57.393 47.619 0.00 0.00 43.02 3.85
2988 4604 3.836562 AGAAAACCCTAAGCGTAAGAGGA 59.163 43.478 0.00 0.00 43.02 3.71
2989 4605 4.081586 AGAGAAAACCCTAAGCGTAAGAGG 60.082 45.833 0.00 0.00 43.02 3.69
2990 4606 5.074584 AGAGAAAACCCTAAGCGTAAGAG 57.925 43.478 0.00 0.00 43.02 2.85
2991 4607 5.235516 CAAGAGAAAACCCTAAGCGTAAGA 58.764 41.667 0.00 0.00 43.02 2.10
2992 4608 4.392138 CCAAGAGAAAACCCTAAGCGTAAG 59.608 45.833 0.00 0.00 43.44 2.34
2993 4609 4.320870 CCAAGAGAAAACCCTAAGCGTAA 58.679 43.478 0.00 0.00 0.00 3.18
2994 4610 3.307199 CCCAAGAGAAAACCCTAAGCGTA 60.307 47.826 0.00 0.00 0.00 4.42
2995 4611 2.552373 CCCAAGAGAAAACCCTAAGCGT 60.552 50.000 0.00 0.00 0.00 5.07
2996 4612 2.084546 CCCAAGAGAAAACCCTAAGCG 58.915 52.381 0.00 0.00 0.00 4.68
2997 4613 1.819288 GCCCAAGAGAAAACCCTAAGC 59.181 52.381 0.00 0.00 0.00 3.09
2998 4614 3.441500 AGCCCAAGAGAAAACCCTAAG 57.558 47.619 0.00 0.00 0.00 2.18
2999 4615 3.499745 GGAAGCCCAAGAGAAAACCCTAA 60.500 47.826 0.00 0.00 0.00 2.69
3000 4616 2.041216 GGAAGCCCAAGAGAAAACCCTA 59.959 50.000 0.00 0.00 0.00 3.53
3001 4617 1.203063 GGAAGCCCAAGAGAAAACCCT 60.203 52.381 0.00 0.00 0.00 4.34
3002 4618 1.257743 GGAAGCCCAAGAGAAAACCC 58.742 55.000 0.00 0.00 0.00 4.11
3003 4619 1.257743 GGGAAGCCCAAGAGAAAACC 58.742 55.000 0.00 0.00 44.65 3.27
3016 4632 2.439156 AATCAGGCGCAGGGAAGC 60.439 61.111 10.83 0.00 0.00 3.86
3017 4633 0.465097 ATCAATCAGGCGCAGGGAAG 60.465 55.000 10.83 0.92 0.00 3.46
3018 4634 0.749091 CATCAATCAGGCGCAGGGAA 60.749 55.000 10.83 0.00 0.00 3.97
3019 4635 1.153107 CATCAATCAGGCGCAGGGA 60.153 57.895 10.83 3.07 0.00 4.20
3020 4636 1.442526 GACATCAATCAGGCGCAGGG 61.443 60.000 10.83 0.00 0.00 4.45
3021 4637 0.463295 AGACATCAATCAGGCGCAGG 60.463 55.000 10.83 0.00 0.00 4.85
3022 4638 1.376543 AAGACATCAATCAGGCGCAG 58.623 50.000 10.83 0.00 0.00 5.18
3023 4639 2.689553 TAAGACATCAATCAGGCGCA 57.310 45.000 10.83 0.00 0.00 6.09
3024 4640 2.874701 ACATAAGACATCAATCAGGCGC 59.125 45.455 0.00 0.00 0.00 6.53
3025 4641 4.813161 AGAACATAAGACATCAATCAGGCG 59.187 41.667 0.00 0.00 0.00 5.52
3026 4642 5.819379 TGAGAACATAAGACATCAATCAGGC 59.181 40.000 0.00 0.00 0.00 4.85
3027 4643 7.172875 GGATGAGAACATAAGACATCAATCAGG 59.827 40.741 0.00 0.00 39.00 3.86
3028 4644 7.172875 GGGATGAGAACATAAGACATCAATCAG 59.827 40.741 0.00 0.00 39.00 2.90
3029 4645 6.994496 GGGATGAGAACATAAGACATCAATCA 59.006 38.462 0.00 0.00 39.00 2.57
3030 4646 6.146837 CGGGATGAGAACATAAGACATCAATC 59.853 42.308 0.00 0.00 39.00 2.67
3031 4647 5.994054 CGGGATGAGAACATAAGACATCAAT 59.006 40.000 0.00 0.00 39.00 2.57
3032 4648 5.359756 CGGGATGAGAACATAAGACATCAA 58.640 41.667 0.00 0.00 39.00 2.57
3033 4649 4.202253 CCGGGATGAGAACATAAGACATCA 60.202 45.833 0.00 0.00 39.00 3.07
3034 4650 4.039245 TCCGGGATGAGAACATAAGACATC 59.961 45.833 0.00 0.00 36.82 3.06
3035 4651 3.967326 TCCGGGATGAGAACATAAGACAT 59.033 43.478 0.00 0.00 36.82 3.06
3036 4652 3.371034 TCCGGGATGAGAACATAAGACA 58.629 45.455 0.00 0.00 36.82 3.41
3037 4653 4.372656 CTTCCGGGATGAGAACATAAGAC 58.627 47.826 0.00 0.00 36.82 3.01
3038 4654 3.388024 CCTTCCGGGATGAGAACATAAGA 59.612 47.826 11.27 0.00 36.82 2.10
3039 4655 3.733337 CCTTCCGGGATGAGAACATAAG 58.267 50.000 11.27 0.00 36.82 1.73
3040 4656 2.158813 GCCTTCCGGGATGAGAACATAA 60.159 50.000 11.27 0.00 36.82 1.90
3041 4657 1.416401 GCCTTCCGGGATGAGAACATA 59.584 52.381 11.27 0.00 36.82 2.29
3042 4658 0.181350 GCCTTCCGGGATGAGAACAT 59.819 55.000 11.27 0.00 39.67 2.71
3043 4659 1.602237 GCCTTCCGGGATGAGAACA 59.398 57.895 11.27 0.00 37.23 3.18
3044 4660 1.521681 CGCCTTCCGGGATGAGAAC 60.522 63.158 11.27 0.00 37.23 3.01
3045 4661 2.900273 CGCCTTCCGGGATGAGAA 59.100 61.111 11.27 0.00 37.23 2.87
3055 4671 4.087892 TGCTCAGCTCCGCCTTCC 62.088 66.667 0.00 0.00 0.00 3.46
3056 4672 2.511145 CTGCTCAGCTCCGCCTTC 60.511 66.667 0.00 0.00 0.00 3.46
3057 4673 2.518973 CTTCTGCTCAGCTCCGCCTT 62.519 60.000 0.00 0.00 0.00 4.35
3058 4674 2.999648 TTCTGCTCAGCTCCGCCT 61.000 61.111 0.00 0.00 0.00 5.52
3059 4675 2.511145 CTTCTGCTCAGCTCCGCC 60.511 66.667 0.00 0.00 0.00 6.13
3060 4676 3.194308 GCTTCTGCTCAGCTCCGC 61.194 66.667 0.00 0.00 34.15 5.54
3061 4677 1.810441 CTGCTTCTGCTCAGCTCCG 60.810 63.158 0.00 0.00 38.19 4.63
3062 4678 1.449956 CCTGCTTCTGCTCAGCTCC 60.450 63.158 0.00 0.00 38.19 4.70
3063 4679 1.020333 CACCTGCTTCTGCTCAGCTC 61.020 60.000 0.00 0.00 38.19 4.09
3064 4680 1.003597 CACCTGCTTCTGCTCAGCT 60.004 57.895 0.00 0.00 38.19 4.24
3065 4681 2.039405 CCACCTGCTTCTGCTCAGC 61.039 63.158 0.00 0.00 40.48 4.26
3066 4682 1.376942 CCCACCTGCTTCTGCTCAG 60.377 63.158 0.00 0.00 40.48 3.35
3067 4683 1.834856 CTCCCACCTGCTTCTGCTCA 61.835 60.000 0.00 0.00 40.48 4.26
3068 4684 1.078567 CTCCCACCTGCTTCTGCTC 60.079 63.158 0.00 0.00 40.48 4.26
3069 4685 2.600729 CCTCCCACCTGCTTCTGCT 61.601 63.158 0.00 0.00 40.48 4.24
3070 4686 2.045536 CCTCCCACCTGCTTCTGC 60.046 66.667 0.00 0.00 40.20 4.26
3071 4687 2.045536 GCCTCCCACCTGCTTCTG 60.046 66.667 0.00 0.00 0.00 3.02
3072 4688 3.710722 CGCCTCCCACCTGCTTCT 61.711 66.667 0.00 0.00 0.00 2.85
3073 4689 4.785453 CCGCCTCCCACCTGCTTC 62.785 72.222 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.