Multiple sequence alignment - TraesCS1B01G393500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G393500 chr1B 100.000 5895 0 0 1 5895 626235380 626229486 0.000000e+00 10887
1 TraesCS1B01G393500 chr1A 87.020 2966 241 62 1 2918 549428505 549425636 0.000000e+00 3212
2 TraesCS1B01G393500 chr1A 85.576 2274 174 63 3167 5326 549425637 549423404 0.000000e+00 2241
3 TraesCS1B01G393500 chr1A 84.826 547 38 19 5321 5856 549423284 549422772 5.270000e-140 508
4 TraesCS1B01G393500 chr1D 84.986 2451 206 79 2997 5335 455789889 455787489 0.000000e+00 2338
5 TraesCS1B01G393500 chr1D 88.071 1970 173 33 276 2216 455792857 455790921 0.000000e+00 2279
6 TraesCS1B01G393500 chr1D 84.146 738 70 25 2231 2944 455790875 455790161 0.000000e+00 671
7 TraesCS1B01G393500 chr1D 85.361 526 34 22 5377 5895 455787491 455787002 6.820000e-139 505
8 TraesCS1B01G393500 chr1D 79.276 304 38 12 1 299 455793145 455792862 7.800000e-44 189
9 TraesCS1B01G393500 chr3A 85.714 462 45 12 5398 5856 707170152 707169709 8.950000e-128 468
10 TraesCS1B01G393500 chr3A 81.572 369 50 13 3249 3606 484104190 484103829 7.470000e-74 289
11 TraesCS1B01G393500 chr3B 92.075 265 18 1 5398 5662 237976798 237976537 2.590000e-98 370
12 TraesCS1B01G393500 chr3B 81.303 353 48 13 3249 3592 473182242 473181899 2.710000e-68 270
13 TraesCS1B01G393500 chr3B 96.875 64 2 0 5398 5461 237974121 237974184 2.250000e-19 108
14 TraesCS1B01G393500 chr7B 91.321 265 20 1 5398 5662 399795171 399794910 5.620000e-95 359
15 TraesCS1B01G393500 chr7B 96.875 64 2 0 5398 5461 399792494 399792557 2.250000e-19 108
16 TraesCS1B01G393500 chr3D 82.267 344 46 13 3250 3586 363267828 363267493 3.480000e-72 283
17 TraesCS1B01G393500 chr3D 92.000 100 7 1 1154 1253 363273205 363273107 7.970000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G393500 chr1B 626229486 626235380 5894 True 10887.0 10887 100.000000 1 5895 1 chr1B.!!$R1 5894
1 TraesCS1B01G393500 chr1A 549422772 549428505 5733 True 1987.0 3212 85.807333 1 5856 3 chr1A.!!$R1 5855
2 TraesCS1B01G393500 chr1D 455787002 455793145 6143 True 1196.4 2338 84.368000 1 5895 5 chr1D.!!$R1 5894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 483 0.031616 TTGGCACCCCAGAAACCTTT 60.032 50.000 0.00 0.00 43.37 3.11 F
451 484 0.031616 TGGCACCCCAGAAACCTTTT 60.032 50.000 0.00 0.00 35.79 2.27 F
713 749 0.322546 ATCGTTGGCCAACCCTTCTC 60.323 55.000 36.75 15.56 38.03 2.87 F
1747 1822 0.458669 GCCATTGAATGTCTGCTGGG 59.541 55.000 4.27 0.00 0.00 4.45 F
3110 3487 1.689813 TGGAAAGCGGTACTTCTGTGA 59.310 47.619 0.00 0.00 37.75 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 1639 0.250234 CGGAGCCAGAGACCATGAAA 59.750 55.000 0.00 0.00 0.00 2.69 R
1679 1754 1.544691 GTGAAGACCTCGAGGCTGTTA 59.455 52.381 31.56 12.59 39.32 2.41 R
2008 2095 1.628846 ACAGCGAAGGGGTATCAAGTT 59.371 47.619 0.00 0.00 0.00 2.66 R
3174 3557 0.517316 CTGGGCACTGTCTTAAACGC 59.483 55.000 0.00 0.00 0.00 4.84 R
4986 5467 0.035317 TCTGCGTTGCCAGACAGATT 59.965 50.000 0.00 0.00 36.96 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.322546 GCGACCCCCAACTCTCAAAT 60.323 55.000 0.00 0.00 0.00 2.32
37 38 1.002857 CCCCCAACTCTCAAATCCCT 58.997 55.000 0.00 0.00 0.00 4.20
38 39 2.205342 CCCCCAACTCTCAAATCCCTA 58.795 52.381 0.00 0.00 0.00 3.53
39 40 2.785857 CCCCCAACTCTCAAATCCCTAT 59.214 50.000 0.00 0.00 0.00 2.57
42 43 5.456763 CCCCCAACTCTCAAATCCCTATTAG 60.457 48.000 0.00 0.00 0.00 1.73
55 56 2.449031 CTATTAGGATGGGCGCGCCA 62.449 60.000 46.88 33.74 37.98 5.69
124 125 0.553819 AGGTGTACTGCAACCCCAAA 59.446 50.000 1.55 0.00 34.70 3.28
152 153 1.073025 TGCGTGCTCAATTCACCCT 59.927 52.632 0.00 0.00 0.00 4.34
153 154 0.955428 TGCGTGCTCAATTCACCCTC 60.955 55.000 0.00 0.00 0.00 4.30
154 155 0.674895 GCGTGCTCAATTCACCCTCT 60.675 55.000 0.00 0.00 0.00 3.69
155 156 1.363744 CGTGCTCAATTCACCCTCTC 58.636 55.000 0.00 0.00 0.00 3.20
157 158 2.626840 GTGCTCAATTCACCCTCTCTC 58.373 52.381 0.00 0.00 0.00 3.20
163 164 4.277476 TCAATTCACCCTCTCTCTCTCTC 58.723 47.826 0.00 0.00 0.00 3.20
164 165 4.017591 TCAATTCACCCTCTCTCTCTCTCT 60.018 45.833 0.00 0.00 0.00 3.10
165 166 3.644966 TTCACCCTCTCTCTCTCTCTC 57.355 52.381 0.00 0.00 0.00 3.20
166 167 2.845659 TCACCCTCTCTCTCTCTCTCT 58.154 52.381 0.00 0.00 0.00 3.10
167 168 2.771943 TCACCCTCTCTCTCTCTCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
168 169 2.774234 CACCCTCTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
169 170 3.041946 ACCCTCTCTCTCTCTCTCTCTC 58.958 54.545 0.00 0.00 0.00 3.20
170 171 3.310954 ACCCTCTCTCTCTCTCTCTCTCT 60.311 52.174 0.00 0.00 0.00 3.10
171 172 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
172 173 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
173 174 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
174 175 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
175 176 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
176 177 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
177 178 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
178 179 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
179 180 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
180 181 2.370189 CTCTCTCTCTCTCTCTCCCTCC 59.630 59.091 0.00 0.00 0.00 4.30
181 182 1.421646 CTCTCTCTCTCTCTCCCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
185 186 1.421646 CTCTCTCTCTCCCTCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
190 191 2.443016 CTCCCTCCCTCTCGGTGG 60.443 72.222 0.00 0.00 43.92 4.61
222 223 7.122048 TGATGGTGTATTGTAAATGAATGGGA 58.878 34.615 0.00 0.00 0.00 4.37
227 228 7.201821 GGTGTATTGTAAATGAATGGGAGAAGG 60.202 40.741 0.00 0.00 0.00 3.46
228 229 7.556275 GTGTATTGTAAATGAATGGGAGAAGGA 59.444 37.037 0.00 0.00 0.00 3.36
231 232 8.613922 ATTGTAAATGAATGGGAGAAGGATTT 57.386 30.769 0.00 0.00 0.00 2.17
232 233 7.408756 TGTAAATGAATGGGAGAAGGATTTG 57.591 36.000 0.00 0.00 0.00 2.32
235 236 7.744678 AAATGAATGGGAGAAGGATTTGATT 57.255 32.000 0.00 0.00 0.00 2.57
273 277 0.179067 TCGCCAACTTCGACTTTGGT 60.179 50.000 20.35 0.00 43.74 3.67
278 311 3.691498 CCAACTTCGACTTTGGTTTGTC 58.309 45.455 13.88 0.00 37.98 3.18
289 322 4.083484 ACTTTGGTTTGTCGCAATACTAGC 60.083 41.667 0.00 0.00 0.00 3.42
297 330 3.384789 TGTCGCAATACTAGCTTGATCCT 59.615 43.478 1.04 0.00 0.00 3.24
319 352 8.229253 TCCTTATTACAATGAAGTAGAGCGTA 57.771 34.615 0.00 0.00 0.00 4.42
324 357 5.892160 ACAATGAAGTAGAGCGTAGTGTA 57.108 39.130 0.00 0.00 0.00 2.90
325 358 5.638783 ACAATGAAGTAGAGCGTAGTGTAC 58.361 41.667 0.00 0.00 0.00 2.90
327 360 6.127703 ACAATGAAGTAGAGCGTAGTGTACAT 60.128 38.462 0.00 0.00 0.00 2.29
332 365 6.360844 AGTAGAGCGTAGTGTACATAAGTG 57.639 41.667 0.00 0.00 0.00 3.16
335 368 2.421073 AGCGTAGTGTACATAAGTGCGA 59.579 45.455 0.00 0.00 32.48 5.10
350 383 2.646175 GCGACCACCTGCTAGACCA 61.646 63.158 0.00 0.00 0.00 4.02
354 387 0.838122 ACCACCTGCTAGACCAAGCT 60.838 55.000 0.00 0.00 43.19 3.74
370 403 2.476051 CTCGCCGTGTGTGCAATC 59.524 61.111 0.00 0.00 0.00 2.67
372 405 3.049674 CGCCGTGTGTGCAATCCT 61.050 61.111 0.00 0.00 0.00 3.24
380 413 2.877691 GTGCAATCCTTGGACGCC 59.122 61.111 9.52 0.00 42.06 5.68
411 444 1.066143 ACGAGGAGCCAACCATGTTAG 60.066 52.381 0.00 0.00 0.00 2.34
416 449 2.436417 GAGCCAACCATGTTAGAGCAA 58.564 47.619 0.00 0.00 0.00 3.91
442 475 0.039618 ACCTTGTATTGGCACCCCAG 59.960 55.000 0.00 0.00 43.37 4.45
450 483 0.031616 TTGGCACCCCAGAAACCTTT 60.032 50.000 0.00 0.00 43.37 3.11
451 484 0.031616 TGGCACCCCAGAAACCTTTT 60.032 50.000 0.00 0.00 35.79 2.27
452 485 1.218196 TGGCACCCCAGAAACCTTTTA 59.782 47.619 0.00 0.00 35.79 1.52
457 490 1.802365 CCCCAGAAACCTTTTACGACG 59.198 52.381 0.00 0.00 0.00 5.12
475 508 2.084013 GGTCACCGACGTATTTGCC 58.916 57.895 0.00 0.00 32.65 4.52
476 510 0.390735 GGTCACCGACGTATTTGCCT 60.391 55.000 0.00 0.00 32.65 4.75
484 518 3.789224 CCGACGTATTTGCCTAAAAATGC 59.211 43.478 0.00 0.00 32.16 3.56
492 526 6.983474 ATTTGCCTAAAAATGCCATTACAC 57.017 33.333 0.00 0.00 0.00 2.90
502 536 1.004277 TGCCATTACACCACTTCCCTC 59.996 52.381 0.00 0.00 0.00 4.30
512 546 4.402474 ACACCACTTCCCTCAAAGAAAAAG 59.598 41.667 0.00 0.00 0.00 2.27
517 551 6.758416 CCACTTCCCTCAAAGAAAAAGAAAAG 59.242 38.462 0.00 0.00 0.00 2.27
521 555 7.660030 TCCCTCAAAGAAAAAGAAAAGATGT 57.340 32.000 0.00 0.00 0.00 3.06
525 559 9.538508 CCTCAAAGAAAAAGAAAAGATGTCATT 57.461 29.630 0.00 0.00 0.00 2.57
567 601 7.005062 GCCATAGGCTTATTTGTGATATACG 57.995 40.000 0.00 0.00 46.69 3.06
569 603 6.818644 CCATAGGCTTATTTGTGATATACGCT 59.181 38.462 0.00 0.00 0.00 5.07
600 636 2.032620 CTACTACCGCCTCATCCACTT 58.967 52.381 0.00 0.00 0.00 3.16
610 646 5.047306 CCGCCTCATCCACTTATTCTACATA 60.047 44.000 0.00 0.00 0.00 2.29
617 653 4.838986 TCCACTTATTCTACATAGCCTCCC 59.161 45.833 0.00 0.00 0.00 4.30
624 660 2.700897 TCTACATAGCCTCCCTCTTTGC 59.299 50.000 0.00 0.00 0.00 3.68
647 683 2.861274 TGCTCATCCATTGACACACAA 58.139 42.857 0.00 0.00 42.95 3.33
664 700 0.608130 CAACACCTCCTCGATGTCCA 59.392 55.000 0.00 0.00 0.00 4.02
713 749 0.322546 ATCGTTGGCCAACCCTTCTC 60.323 55.000 36.75 15.56 38.03 2.87
715 751 1.606601 GTTGGCCAACCCTTCTCCC 60.607 63.158 34.36 9.25 35.36 4.30
736 772 1.839994 TGCCCTCATTCTCTACCCTTG 59.160 52.381 0.00 0.00 0.00 3.61
745 781 3.121929 TCTCTACCCTTGCTCCTCATT 57.878 47.619 0.00 0.00 0.00 2.57
752 788 2.892852 CCCTTGCTCCTCATTTGTTTCA 59.107 45.455 0.00 0.00 0.00 2.69
773 809 6.715347 TCATCTTCTTCCTCGTCATTGATA 57.285 37.500 0.00 0.00 0.00 2.15
778 814 8.642935 TCTTCTTCCTCGTCATTGATATATCT 57.357 34.615 13.79 0.00 0.00 1.98
790 832 3.981212 TGATATATCTGCCTCGATCCCA 58.019 45.455 13.79 0.00 0.00 4.37
793 835 2.910688 TATCTGCCTCGATCCCAAAC 57.089 50.000 0.00 0.00 0.00 2.93
848 902 5.262804 TGGAAATTCATCACATCACATGGA 58.737 37.500 0.00 0.00 33.60 3.41
854 908 9.976511 AAATTCATCACATCACATGGATATTTC 57.023 29.630 0.00 0.00 33.95 2.17
920 976 1.228521 CTGACATGTGGGGCCAACA 60.229 57.895 17.90 17.90 0.00 3.33
949 1007 4.975147 TCCCTATCCAAGATTTCAAGGCTA 59.025 41.667 0.00 0.00 0.00 3.93
1077 1135 0.953960 ATCGTCGCTCCCACCAAAAC 60.954 55.000 0.00 0.00 0.00 2.43
1111 1169 2.884207 CGAAACCCTAGCGGCGAC 60.884 66.667 12.98 1.23 33.26 5.19
1241 1299 0.933509 CCTCTGCGAATACGTACGGC 60.934 60.000 21.06 13.14 41.98 5.68
1243 1301 1.065273 CTGCGAATACGTACGGCCT 59.935 57.895 21.06 2.27 41.98 5.19
1250 1308 1.111715 ATACGTACGGCCTCTTCCCC 61.112 60.000 21.06 0.00 0.00 4.81
1253 1311 2.365105 TACGGCCTCTTCCCCCTG 60.365 66.667 0.00 0.00 0.00 4.45
1360 1426 1.599606 CTCAGTGGTGCGGCTCTACT 61.600 60.000 14.17 14.17 0.00 2.57
1409 1480 2.486918 CTGATGCTCTTGTGTGTGTGA 58.513 47.619 0.00 0.00 0.00 3.58
1567 1639 1.002773 GTCCCCGACACCAACTACATT 59.997 52.381 0.00 0.00 32.09 2.71
1585 1657 2.496899 TTTTCATGGTCTCTGGCTCC 57.503 50.000 0.00 0.00 0.00 4.70
1592 1664 3.071206 TCTCTGGCTCCGCTGTCC 61.071 66.667 0.00 0.00 0.00 4.02
1601 1673 3.353836 CCGCTGTCCGTTTGGTGG 61.354 66.667 0.00 0.00 36.30 4.61
1602 1674 2.590575 CGCTGTCCGTTTGGTGGT 60.591 61.111 0.00 0.00 36.30 4.16
1679 1754 2.124236 TTTGTGGACCGCGGGTTT 60.124 55.556 31.76 8.67 35.25 3.27
1688 1763 2.396157 CCGCGGGTTTAACAGCCTC 61.396 63.158 20.10 0.00 41.47 4.70
1706 1781 2.159170 CCTCGAGGTCTTCACCATTCTC 60.159 54.545 24.04 0.00 46.68 2.87
1745 1820 3.243301 GGTATGCCATTGAATGTCTGCTG 60.243 47.826 4.27 0.00 34.09 4.41
1747 1822 0.458669 GCCATTGAATGTCTGCTGGG 59.541 55.000 4.27 0.00 0.00 4.45
1799 1881 8.122952 GCACATTTATCATGTAGGTACTTGAAC 58.877 37.037 9.14 0.00 41.63 3.18
1867 1949 2.375174 TCCCAAACAGCACCTTCATAGT 59.625 45.455 0.00 0.00 0.00 2.12
1955 2042 6.369890 CAGCACTTGTGAGTTCATATGTAACT 59.630 38.462 15.84 15.84 39.84 2.24
1965 2052 8.486210 TGAGTTCATATGTAACTTTGCTAGGAT 58.514 33.333 16.56 0.00 37.31 3.24
1972 2059 5.001232 TGTAACTTTGCTAGGATGGTTGTC 58.999 41.667 10.86 6.39 0.00 3.18
1986 2073 2.197465 GGTTGTCTCCACCTAAGGGAT 58.803 52.381 0.00 0.00 33.04 3.85
1990 2077 3.256704 TGTCTCCACCTAAGGGATGTTT 58.743 45.455 0.00 0.00 33.04 2.83
1994 2081 4.010349 CTCCACCTAAGGGATGTTTGAAC 58.990 47.826 0.00 0.00 33.04 3.18
1995 2082 3.396276 TCCACCTAAGGGATGTTTGAACA 59.604 43.478 0.00 0.00 38.55 3.18
2008 2095 6.899393 ATGTTTGAACATTCAGGAAGCTAA 57.101 33.333 3.60 0.00 46.95 3.09
2018 2105 6.599638 ACATTCAGGAAGCTAAACTTGATACC 59.400 38.462 0.00 0.00 39.29 2.73
2041 2128 2.380084 TCGCTGTAGAATGGAACCAC 57.620 50.000 0.00 0.00 0.00 4.16
2057 2144 4.418392 GAACCACTGCTTCATGCTTAATG 58.582 43.478 0.00 0.00 43.37 1.90
2096 2183 8.662781 TTAACATACTTGCTGACTCCATATTC 57.337 34.615 0.00 0.00 0.00 1.75
2112 2203 5.587043 TCCATATTCGACAATGGTTAACACC 59.413 40.000 19.68 0.00 42.77 4.16
2146 2238 8.504005 TCTGTTCGAATCCAGTTTATTTTCTTC 58.496 33.333 13.61 0.00 0.00 2.87
2147 2239 8.160521 TGTTCGAATCCAGTTTATTTTCTTCA 57.839 30.769 0.00 0.00 0.00 3.02
2152 2244 8.076178 CGAATCCAGTTTATTTTCTTCACACTT 58.924 33.333 0.00 0.00 0.00 3.16
2171 2263 8.567948 TCACACTTGAAGAGTAATTTCAATTCC 58.432 33.333 0.00 0.00 41.98 3.01
2172 2264 8.571336 CACACTTGAAGAGTAATTTCAATTCCT 58.429 33.333 0.00 0.00 41.98 3.36
2173 2265 8.787852 ACACTTGAAGAGTAATTTCAATTCCTC 58.212 33.333 0.00 0.00 41.98 3.71
2174 2266 7.959651 CACTTGAAGAGTAATTTCAATTCCTCG 59.040 37.037 0.00 0.00 41.98 4.63
2185 2277 6.727824 TTTCAATTCCTCGCAAAACAAAAA 57.272 29.167 0.00 0.00 0.00 1.94
2188 2282 6.102663 TCAATTCCTCGCAAAACAAAAAGAA 58.897 32.000 0.00 0.00 0.00 2.52
2223 2348 6.428465 TCAAATAGCTTGGTATCACGACAAAA 59.572 34.615 0.00 0.00 35.56 2.44
2328 2453 2.224185 ACAGTTGACGCAGGTACAATCA 60.224 45.455 0.00 0.00 0.00 2.57
2457 2582 6.265577 GCTTTATGCTGGTTAACCAATACTG 58.734 40.000 26.90 16.27 46.97 2.74
2461 2586 4.917385 TGCTGGTTAACCAATACTGTCAT 58.083 39.130 26.90 0.00 46.97 3.06
2462 2587 4.699735 TGCTGGTTAACCAATACTGTCATG 59.300 41.667 26.90 12.85 46.97 3.07
2463 2588 4.700213 GCTGGTTAACCAATACTGTCATGT 59.300 41.667 26.90 0.00 46.97 3.21
2464 2589 5.391950 GCTGGTTAACCAATACTGTCATGTG 60.392 44.000 26.90 12.18 46.97 3.21
2465 2590 5.626142 TGGTTAACCAATACTGTCATGTGT 58.374 37.500 25.19 0.00 44.35 3.72
2656 2801 6.212589 TGTTAAGTCCTAGGTTCACATGATGA 59.787 38.462 9.08 0.00 34.65 2.92
2660 2805 7.060383 AGTCCTAGGTTCACATGATGATAAG 57.940 40.000 9.08 0.00 37.11 1.73
2744 2892 1.967319 ACGCACAGTTGATCAGGTTT 58.033 45.000 0.00 0.00 0.00 3.27
2815 2963 3.211803 CACTGCTGTGGTGAAATCATG 57.788 47.619 15.43 0.00 40.33 3.07
2924 3072 6.388619 AATTTCCCTTTGAGTAGCTTCCTA 57.611 37.500 0.00 0.00 0.00 2.94
2937 3086 6.534634 AGTAGCTTCCTATGTTGTTTGAAGT 58.465 36.000 0.00 0.00 35.88 3.01
2950 3115 4.124238 TGTTTGAAGTGTGTACCAGTAGC 58.876 43.478 0.00 0.00 0.00 3.58
2952 3117 4.617253 TTGAAGTGTGTACCAGTAGCAT 57.383 40.909 0.00 0.00 0.00 3.79
2953 3118 4.188247 TGAAGTGTGTACCAGTAGCATC 57.812 45.455 0.00 0.00 0.00 3.91
2958 3123 4.222810 AGTGTGTACCAGTAGCATCATCAA 59.777 41.667 0.00 0.00 0.00 2.57
2982 3147 6.561519 AAAATACATGGCTCCTAGTGTACT 57.438 37.500 0.00 0.00 30.67 2.73
2983 3148 7.670605 AAAATACATGGCTCCTAGTGTACTA 57.329 36.000 0.00 0.00 30.67 1.82
2984 3149 7.857404 AAATACATGGCTCCTAGTGTACTAT 57.143 36.000 0.00 0.00 30.67 2.12
2985 3150 8.951614 AAATACATGGCTCCTAGTGTACTATA 57.048 34.615 0.00 0.00 30.67 1.31
2986 3151 8.951614 AATACATGGCTCCTAGTGTACTATAA 57.048 34.615 0.00 0.00 30.67 0.98
2987 3152 9.548631 AATACATGGCTCCTAGTGTACTATAAT 57.451 33.333 0.00 0.00 30.67 1.28
2989 3154 8.350852 ACATGGCTCCTAGTGTACTATAATAC 57.649 38.462 0.00 0.00 0.00 1.89
2992 3157 7.173722 TGGCTCCTAGTGTACTATAATACTCC 58.826 42.308 0.00 0.00 0.00 3.85
2993 3158 6.602803 GGCTCCTAGTGTACTATAATACTCCC 59.397 46.154 0.00 0.00 0.00 4.30
2994 3159 7.173722 GCTCCTAGTGTACTATAATACTCCCA 58.826 42.308 0.00 0.00 0.00 4.37
3003 3371 8.857098 TGTACTATAATACTCCCATCTGTTGTC 58.143 37.037 0.00 0.00 0.00 3.18
3015 3383 4.703575 CCATCTGTTGTCTTCATGTGGATT 59.296 41.667 0.00 0.00 0.00 3.01
3043 3419 9.645059 TCTTCTGTTAGAGTCATCTTTGTTATG 57.355 33.333 0.00 0.00 36.96 1.90
3045 3421 7.615403 TCTGTTAGAGTCATCTTTGTTATGCT 58.385 34.615 0.00 0.00 36.96 3.79
3046 3422 8.097038 TCTGTTAGAGTCATCTTTGTTATGCTT 58.903 33.333 0.00 0.00 36.96 3.91
3047 3423 8.032952 TGTTAGAGTCATCTTTGTTATGCTTG 57.967 34.615 0.00 0.00 36.96 4.01
3051 3427 8.621532 AGAGTCATCTTTGTTATGCTTGTTTA 57.378 30.769 0.00 0.00 28.57 2.01
3052 3428 9.236006 AGAGTCATCTTTGTTATGCTTGTTTAT 57.764 29.630 0.00 0.00 28.57 1.40
3053 3429 9.495754 GAGTCATCTTTGTTATGCTTGTTTATC 57.504 33.333 0.00 0.00 0.00 1.75
3062 3438 8.121305 TGTTATGCTTGTTTATCTTTGGTGAT 57.879 30.769 0.00 0.00 0.00 3.06
3079 3455 9.612620 CTTTGGTGATAAAAATAGACTTCACAC 57.387 33.333 0.00 0.00 36.16 3.82
3089 3466 8.420374 AAAATAGACTTCACACCGTACATATG 57.580 34.615 0.00 0.00 0.00 1.78
3092 3469 3.857052 ACTTCACACCGTACATATGTGG 58.143 45.455 18.81 14.01 43.21 4.17
3102 3479 3.488310 CGTACATATGTGGAAAGCGGTAC 59.512 47.826 18.81 3.51 0.00 3.34
3105 3482 4.189231 ACATATGTGGAAAGCGGTACTTC 58.811 43.478 7.78 0.00 37.75 3.01
3106 3483 4.081087 ACATATGTGGAAAGCGGTACTTCT 60.081 41.667 7.78 0.00 37.75 2.85
3107 3484 2.163818 TGTGGAAAGCGGTACTTCTG 57.836 50.000 0.00 0.00 37.75 3.02
3110 3487 1.689813 TGGAAAGCGGTACTTCTGTGA 59.310 47.619 0.00 0.00 37.75 3.58
3120 3497 4.916249 CGGTACTTCTGTGAAACTACTCAC 59.084 45.833 0.00 0.00 45.01 3.51
3127 3509 5.010933 TCTGTGAAACTACTCACTAGGAGG 58.989 45.833 11.46 0.28 45.03 4.30
3142 3524 6.773200 TCACTAGGAGGAGAACTATGTGTATG 59.227 42.308 0.00 0.00 0.00 2.39
3149 3531 7.225538 GGAGGAGAACTATGTGTATGTGATTTG 59.774 40.741 0.00 0.00 0.00 2.32
3150 3532 7.851228 AGGAGAACTATGTGTATGTGATTTGA 58.149 34.615 0.00 0.00 0.00 2.69
3151 3533 8.489489 AGGAGAACTATGTGTATGTGATTTGAT 58.511 33.333 0.00 0.00 0.00 2.57
3174 3557 6.485830 TTTCCCTGTTATATGAGACTGGAG 57.514 41.667 10.93 0.00 37.12 3.86
3217 3600 6.997476 AGTGAAATACCAAACCAAAATTGCAT 59.003 30.769 0.00 0.00 0.00 3.96
3259 3646 0.324614 TGTTGTGTCCAGATGCGGAT 59.675 50.000 0.00 0.00 37.41 4.18
3275 3662 2.287915 GCGGATAATTGATCGCAACTGT 59.712 45.455 13.51 0.00 36.72 3.55
3547 3934 4.566907 GGAAGGCCTAAAGTACATGTTCCA 60.567 45.833 5.16 0.00 32.75 3.53
3557 3944 3.650942 AGTACATGTTCCAAGACAAGGGA 59.349 43.478 2.30 0.00 32.47 4.20
3578 3965 2.029828 ACTTGTAACTGTGAGCTCTCCG 60.030 50.000 16.19 10.44 0.00 4.63
3633 4020 2.469274 AGTTCCAGATGCTCACTGTG 57.531 50.000 0.17 0.17 34.04 3.66
3639 4026 4.507710 TCCAGATGCTCACTGTGTATTTC 58.492 43.478 7.79 2.17 34.04 2.17
3645 4032 7.279536 CAGATGCTCACTGTGTATTTCTGTATT 59.720 37.037 7.79 0.00 0.00 1.89
3646 4033 7.826252 AGATGCTCACTGTGTATTTCTGTATTT 59.174 33.333 7.79 0.00 0.00 1.40
3647 4034 7.744087 TGCTCACTGTGTATTTCTGTATTTT 57.256 32.000 7.79 0.00 0.00 1.82
3704 4092 2.165030 CAGATGTGGGAATGTTGCTTCC 59.835 50.000 0.00 0.00 43.39 3.46
3737 4125 3.704566 TCAGCGAAACTATGGTAGGTCAT 59.295 43.478 0.00 0.00 0.00 3.06
3811 4199 1.815817 TACTGCTGTCTTCGCCTGCA 61.816 55.000 0.00 0.00 35.77 4.41
3837 4225 8.807667 ATAATTTGCTAGACATGCTTTATTGC 57.192 30.769 0.00 0.00 0.00 3.56
3846 4234 6.523840 AGACATGCTTTATTGCCTTCAAAAA 58.476 32.000 0.00 0.00 35.56 1.94
3863 4251 6.984740 TCAAAAATTTCAAGAATCCGTTCG 57.015 33.333 0.00 0.00 39.38 3.95
3870 4258 4.713824 TCAAGAATCCGTTCGTACTCAT 57.286 40.909 0.00 0.00 39.38 2.90
3886 4274 3.535561 ACTCATGCTTTGATAGGTTCCG 58.464 45.455 0.00 0.00 32.72 4.30
3888 4276 3.531538 TCATGCTTTGATAGGTTCCGTC 58.468 45.455 0.00 0.00 0.00 4.79
3889 4277 3.055458 TCATGCTTTGATAGGTTCCGTCA 60.055 43.478 0.00 0.00 0.00 4.35
3901 4289 3.118000 AGGTTCCGTCAGAAACCTTCTTT 60.118 43.478 0.99 0.00 43.86 2.52
3954 4342 8.650143 ATTTCACTGTTTTGTATATGAACCCT 57.350 30.769 0.00 0.00 0.00 4.34
3961 4349 5.450818 TTTGTATATGAACCCTGGAGCTT 57.549 39.130 0.00 0.00 0.00 3.74
3962 4350 5.450818 TTGTATATGAACCCTGGAGCTTT 57.549 39.130 0.00 0.00 0.00 3.51
3967 4355 4.591321 ATGAACCCTGGAGCTTTTGATA 57.409 40.909 0.00 0.00 0.00 2.15
3982 4370 7.337167 AGCTTTTGATAGCATATCCAGATAGG 58.663 38.462 0.00 0.00 43.68 2.57
3988 4376 4.899352 AGCATATCCAGATAGGGAACAC 57.101 45.455 1.91 0.00 41.12 3.32
3990 4378 4.285517 AGCATATCCAGATAGGGAACACAG 59.714 45.833 1.91 0.00 41.12 3.66
3994 4382 1.139853 CCAGATAGGGAACACAGGCTC 59.860 57.143 0.00 0.00 0.00 4.70
3997 4385 1.338136 ATAGGGAACACAGGCTCCGG 61.338 60.000 0.00 0.00 31.97 5.14
3998 4386 2.449967 TAGGGAACACAGGCTCCGGA 62.450 60.000 2.93 2.93 31.97 5.14
3999 4387 2.266055 GGAACACAGGCTCCGGAG 59.734 66.667 27.83 27.83 0.00 4.63
4001 4389 1.255667 GGAACACAGGCTCCGGAGTA 61.256 60.000 31.43 0.00 0.00 2.59
4002 4390 0.173708 GAACACAGGCTCCGGAGTAG 59.826 60.000 31.43 22.53 0.00 2.57
4008 4424 2.220313 CAGGCTCCGGAGTAGTAGTAC 58.780 57.143 31.43 12.73 0.00 2.73
4012 4428 3.070878 GGCTCCGGAGTAGTAGTACTAGT 59.929 52.174 31.43 16.10 39.78 2.57
4014 4430 5.227152 GCTCCGGAGTAGTAGTACTAGTAC 58.773 50.000 31.43 29.20 39.78 2.73
4025 4441 4.866508 AGTACTAGTACTGCAGCACAAA 57.133 40.909 30.33 5.97 44.11 2.83
4058 4474 7.335171 CAGTTCCTGTTATGATTGATGAAGTCA 59.665 37.037 0.00 0.00 34.25 3.41
4075 4491 5.070446 TGAAGTCACTCCTGTATTTCTGTGT 59.930 40.000 0.00 0.00 0.00 3.72
4113 4529 8.304596 TGACAAACTAACAGTAATAGGAGTCTG 58.695 37.037 0.00 0.00 0.00 3.51
4114 4530 8.418597 ACAAACTAACAGTAATAGGAGTCTGA 57.581 34.615 0.00 0.00 0.00 3.27
4116 4532 9.360093 CAAACTAACAGTAATAGGAGTCTGAAG 57.640 37.037 0.00 0.00 0.00 3.02
4120 4536 7.784470 AACAGTAATAGGAGTCTGAAGAAGT 57.216 36.000 0.00 0.00 0.00 3.01
4122 4538 8.880991 ACAGTAATAGGAGTCTGAAGAAGTAA 57.119 34.615 0.00 0.00 0.00 2.24
4123 4539 8.741841 ACAGTAATAGGAGTCTGAAGAAGTAAC 58.258 37.037 0.00 0.00 0.00 2.50
4130 4546 7.235804 AGGAGTCTGAAGAAGTAACTTAGTCT 58.764 38.462 0.00 0.00 0.00 3.24
4144 4560 8.510505 AGTAACTTAGTCTAGAGTAAACAACCG 58.489 37.037 18.46 9.92 0.00 4.44
4149 4565 9.719279 CTTAGTCTAGAGTAAACAACCGAATAG 57.281 37.037 18.46 1.87 0.00 1.73
4150 4566 7.934855 AGTCTAGAGTAAACAACCGAATAGA 57.065 36.000 0.00 0.00 0.00 1.98
4174 4590 4.594920 ACCTGAGATTCTGAGAAGGAACAA 59.405 41.667 4.24 0.00 0.00 2.83
4180 4596 6.310149 AGATTCTGAGAAGGAACAAACCATT 58.690 36.000 0.00 0.00 0.00 3.16
4187 4603 2.519013 AGGAACAAACCATTCCAGCTC 58.481 47.619 6.55 0.00 46.98 4.09
4203 4619 1.731720 GCTCCCAAGCTGTAGACTTG 58.268 55.000 0.00 0.00 45.55 3.16
4204 4620 1.002544 GCTCCCAAGCTGTAGACTTGT 59.997 52.381 11.99 0.00 45.55 3.16
4208 4624 2.808543 CCCAAGCTGTAGACTTGTCAAC 59.191 50.000 3.49 0.00 42.41 3.18
4214 4630 4.941263 AGCTGTAGACTTGTCAACAAACAA 59.059 37.500 3.49 0.00 37.56 2.83
4254 4670 3.364964 GGTAACAAATGAACTCGTGCCTG 60.365 47.826 0.00 0.00 0.00 4.85
4256 4672 0.109597 CAAATGAACTCGTGCCTGCC 60.110 55.000 0.00 0.00 0.00 4.85
4274 4690 3.887716 CTGCCATCTTTCCCTGATAAAGG 59.112 47.826 0.00 0.00 46.94 3.11
4289 4705 6.013898 CCTGATAAAGGGAAGCAGAGATCATA 60.014 42.308 0.00 0.00 43.15 2.15
4290 4706 7.379059 TGATAAAGGGAAGCAGAGATCATAA 57.621 36.000 0.00 0.00 0.00 1.90
4291 4707 7.220030 TGATAAAGGGAAGCAGAGATCATAAC 58.780 38.462 0.00 0.00 0.00 1.89
4292 4708 5.441718 AAAGGGAAGCAGAGATCATAACA 57.558 39.130 0.00 0.00 0.00 2.41
4293 4709 5.441718 AAGGGAAGCAGAGATCATAACAA 57.558 39.130 0.00 0.00 0.00 2.83
4294 4710 5.643421 AGGGAAGCAGAGATCATAACAAT 57.357 39.130 0.00 0.00 0.00 2.71
4295 4711 6.753913 AGGGAAGCAGAGATCATAACAATA 57.246 37.500 0.00 0.00 0.00 1.90
4327 4743 5.781818 ACAACAATCTCCATTCAATTCCCTT 59.218 36.000 0.00 0.00 0.00 3.95
4328 4744 5.927281 ACAATCTCCATTCAATTCCCTTG 57.073 39.130 0.00 0.00 36.09 3.61
4332 4748 4.081406 TCTCCATTCAATTCCCTTGTGTG 58.919 43.478 0.00 0.00 36.20 3.82
4346 4762 3.118261 CCTTGTGTGGCAGTACCTGATAT 60.118 47.826 0.00 0.00 40.22 1.63
4347 4763 3.541996 TGTGTGGCAGTACCTGATATG 57.458 47.619 0.00 0.00 40.22 1.78
4348 4764 2.837591 TGTGTGGCAGTACCTGATATGT 59.162 45.455 0.00 0.00 40.22 2.29
4349 4765 3.263170 TGTGTGGCAGTACCTGATATGTT 59.737 43.478 0.00 0.00 40.22 2.71
4350 4766 4.468153 TGTGTGGCAGTACCTGATATGTTA 59.532 41.667 0.00 0.00 40.22 2.41
4355 4776 8.094548 TGTGGCAGTACCTGATATGTTATTATC 58.905 37.037 0.00 0.00 40.22 1.75
4365 4786 9.060347 CCTGATATGTTATTATCCATACCATGC 57.940 37.037 0.00 0.00 0.00 4.06
4374 4795 6.942532 TTATCCATACCATGCTTTTCAGTC 57.057 37.500 0.00 0.00 0.00 3.51
4375 4796 3.620488 TCCATACCATGCTTTTCAGTCC 58.380 45.455 0.00 0.00 0.00 3.85
4377 4798 3.379372 CCATACCATGCTTTTCAGTCCTG 59.621 47.826 0.00 0.00 0.00 3.86
4378 4799 2.664402 ACCATGCTTTTCAGTCCTGT 57.336 45.000 0.00 0.00 0.00 4.00
4380 4801 4.098914 ACCATGCTTTTCAGTCCTGTTA 57.901 40.909 0.00 0.00 0.00 2.41
4463 4911 1.466167 CGTTGGCAGGAAAGAGATGTG 59.534 52.381 0.00 0.00 0.00 3.21
4538 4988 3.055312 GTCCCGTATTTCCTTTGACCTCT 60.055 47.826 0.00 0.00 0.00 3.69
4593 5043 4.065088 TCTGGTGTTCATTGTTGTAGCTC 58.935 43.478 0.00 0.00 0.00 4.09
4608 5058 2.353958 CTCCAGCCCACAGTGCAT 59.646 61.111 0.00 0.00 0.00 3.96
4611 5061 2.693762 CCAGCCCACAGTGCATTCG 61.694 63.158 0.00 0.00 0.00 3.34
4629 5079 5.769367 CATTCGGATCATCTGATGCATTTT 58.231 37.500 12.78 0.00 42.14 1.82
4641 5093 2.077413 TGCATTTTGATTTCACCGCC 57.923 45.000 0.00 0.00 0.00 6.13
4658 5110 1.160137 GCCTGTCTTAACCTGCTGTG 58.840 55.000 0.00 0.00 0.00 3.66
4699 5151 2.779742 TAGCTGCCAATTTGCCCCGT 62.780 55.000 0.00 0.00 0.00 5.28
4713 5165 2.164338 GCCCCGTTTTTGTCCTTCATA 58.836 47.619 0.00 0.00 0.00 2.15
4731 5183 0.902531 TAGCCTGTCCACACCTAAGC 59.097 55.000 0.00 0.00 0.00 3.09
4733 5185 0.391793 GCCTGTCCACACCTAAGCTC 60.392 60.000 0.00 0.00 0.00 4.09
4734 5186 0.976641 CCTGTCCACACCTAAGCTCA 59.023 55.000 0.00 0.00 0.00 4.26
4765 5225 7.230510 TCTGTATTTTAGAACCAACTTGTGCAT 59.769 33.333 0.00 0.00 0.00 3.96
4824 5284 6.071221 AGGATGAAATATTGTTGTGTGTGCAT 60.071 34.615 0.00 0.00 0.00 3.96
4828 5288 0.318869 ATTGTTGTGTGTGCATGGCG 60.319 50.000 0.00 0.00 0.00 5.69
4865 5328 3.726607 CAGTCAGCTGAAGAACTCTGTT 58.273 45.455 20.19 0.00 45.28 3.16
4867 5330 2.222911 GTCAGCTGAAGAACTCTGTTGC 59.777 50.000 20.19 0.00 35.18 4.17
4870 5333 2.157738 GCTGAAGAACTCTGTTGCCAT 58.842 47.619 0.00 0.00 0.00 4.40
4881 5344 6.759497 ACTCTGTTGCCATAGTTAAATTCC 57.241 37.500 0.00 0.00 0.00 3.01
4882 5345 6.245408 ACTCTGTTGCCATAGTTAAATTCCA 58.755 36.000 0.00 0.00 0.00 3.53
4891 5354 1.808343 AGTTAAATTCCACGGCGAACC 59.192 47.619 16.62 0.00 0.00 3.62
4892 5355 1.536331 GTTAAATTCCACGGCGAACCA 59.464 47.619 16.62 0.00 34.57 3.67
4893 5356 2.116827 TAAATTCCACGGCGAACCAT 57.883 45.000 16.62 0.00 34.57 3.55
4894 5357 0.525761 AAATTCCACGGCGAACCATG 59.474 50.000 16.62 0.00 34.57 3.66
4895 5358 0.322098 AATTCCACGGCGAACCATGA 60.322 50.000 16.62 0.00 34.57 3.07
4896 5359 1.024579 ATTCCACGGCGAACCATGAC 61.025 55.000 16.62 0.00 34.57 3.06
4898 5361 1.745115 CCACGGCGAACCATGACAT 60.745 57.895 16.62 0.00 34.57 3.06
4972 5453 4.349636 TCAGTAACAGATGGGTCTTTTCCA 59.650 41.667 0.00 0.00 38.82 3.53
4974 5455 2.185004 ACAGATGGGTCTTTTCCACG 57.815 50.000 0.00 0.00 37.08 4.94
4986 5467 4.243008 TCCACGCTGGAAACCGCA 62.243 61.111 4.51 0.00 45.00 5.69
5001 5485 1.133253 CGCAATCTGTCTGGCAACG 59.867 57.895 0.00 0.00 42.51 4.10
5029 5523 8.450964 AGATTCACTGAAATGTAAACAATACCG 58.549 33.333 0.00 0.00 0.00 4.02
5051 5545 6.146898 CCGAACTGAAAAACCATAACGAAAT 58.853 36.000 0.00 0.00 0.00 2.17
5052 5546 6.304683 CCGAACTGAAAAACCATAACGAAATC 59.695 38.462 0.00 0.00 0.00 2.17
5057 5551 7.013846 ACTGAAAAACCATAACGAAATCCTTCA 59.986 33.333 0.00 0.00 0.00 3.02
5115 5614 2.732016 TGGTGAACCACGACGGAG 59.268 61.111 0.00 0.00 42.01 4.63
5153 5652 0.597568 TGCCTCATTTCCAAACGCAG 59.402 50.000 0.00 0.00 0.00 5.18
5171 5670 3.432467 CGCAGTCTAGTTCTCTCCTCCTA 60.432 52.174 0.00 0.00 0.00 2.94
5172 5671 4.134563 GCAGTCTAGTTCTCTCCTCCTAG 58.865 52.174 0.00 0.00 0.00 3.02
5174 5673 5.365619 CAGTCTAGTTCTCTCCTCCTAGTC 58.634 50.000 0.00 0.00 0.00 2.59
5199 5698 0.679321 GGCCCAGGAAGAGCAGAAAG 60.679 60.000 0.00 0.00 0.00 2.62
5228 5732 1.076332 CGGACCATCGAAAACTCCAC 58.924 55.000 0.00 0.00 0.00 4.02
5259 5763 4.342772 GCTGTCACCAATGTAAAATAGCG 58.657 43.478 0.00 0.00 0.00 4.26
5261 5765 5.619086 GCTGTCACCAATGTAAAATAGCGTT 60.619 40.000 0.00 0.00 0.00 4.84
5265 5769 8.605746 TGTCACCAATGTAAAATAGCGTTATAC 58.394 33.333 0.00 0.00 0.00 1.47
5367 5996 0.168788 AAATCACATTCACGCCGCTG 59.831 50.000 0.00 0.00 0.00 5.18
5386 6025 4.463879 CAGGAGTGAGGCTGGCGG 62.464 72.222 0.00 0.00 0.00 6.13
5432 6071 4.134623 GGTTTGTCACCACGCAGA 57.865 55.556 0.00 0.00 46.42 4.26
5441 6080 0.877071 CACCACGCAGAAGCAAGAAT 59.123 50.000 0.00 0.00 42.27 2.40
5449 6088 5.961843 CACGCAGAAGCAAGAATGTATTTAG 59.038 40.000 0.00 0.00 42.27 1.85
5456 6095 3.633986 GCAAGAATGTATTTAGCCTGGCT 59.366 43.478 26.52 26.52 43.41 4.75
5457 6096 4.498682 GCAAGAATGTATTTAGCCTGGCTG 60.499 45.833 30.83 11.15 40.10 4.85
5458 6097 3.825328 AGAATGTATTTAGCCTGGCTGG 58.175 45.455 30.83 5.98 40.10 4.85
5480 6119 3.827784 CGTCGCTCCGAGCAAACG 61.828 66.667 23.11 23.11 42.58 3.60
5667 6312 2.161030 AGGTCGTCAAGGTAGACAGAC 58.839 52.381 0.00 0.00 39.27 3.51
5672 6317 2.029828 CGTCAAGGTAGACAGACTTGCT 60.030 50.000 0.00 0.00 40.93 3.91
5683 6328 1.135024 CAGACTTGCTCTCAGAGGCTC 60.135 57.143 6.34 6.34 0.00 4.70
5684 6329 0.175531 GACTTGCTCTCAGAGGCTCC 59.824 60.000 11.71 0.00 0.00 4.70
5689 6334 1.724582 GCTCTCAGAGGCTCCGTCTC 61.725 65.000 11.71 0.00 34.04 3.36
5691 6336 1.379176 CTCAGAGGCTCCGTCTCCA 60.379 63.158 11.71 0.00 34.41 3.86
5696 6341 2.764128 GGCTCCGTCTCCATCCCA 60.764 66.667 0.00 0.00 0.00 4.37
5698 6343 2.060980 GCTCCGTCTCCATCCCAGT 61.061 63.158 0.00 0.00 0.00 4.00
5709 6354 2.162681 CCATCCCAGTTCTTGGTGTTC 58.837 52.381 0.00 0.00 46.25 3.18
5710 6355 1.806542 CATCCCAGTTCTTGGTGTTCG 59.193 52.381 0.00 0.00 46.25 3.95
5715 6360 1.002468 CAGTTCTTGGTGTTCGGCTTG 60.002 52.381 0.00 0.00 0.00 4.01
5719 6364 0.738389 CTTGGTGTTCGGCTTGTTGT 59.262 50.000 0.00 0.00 0.00 3.32
5720 6365 1.944024 CTTGGTGTTCGGCTTGTTGTA 59.056 47.619 0.00 0.00 0.00 2.41
5721 6366 1.301423 TGGTGTTCGGCTTGTTGTAC 58.699 50.000 0.00 0.00 0.00 2.90
5728 6373 3.610040 TCGGCTTGTTGTACTGATGAT 57.390 42.857 0.00 0.00 0.00 2.45
5732 6377 4.449068 CGGCTTGTTGTACTGATGATATCC 59.551 45.833 0.00 0.00 0.00 2.59
5856 6501 2.621929 CGGAGAAGGAGAAGGAGAAGGA 60.622 54.545 0.00 0.00 0.00 3.36
5857 6502 3.031013 GGAGAAGGAGAAGGAGAAGGAG 58.969 54.545 0.00 0.00 0.00 3.69
5858 6503 3.309556 GGAGAAGGAGAAGGAGAAGGAGA 60.310 52.174 0.00 0.00 0.00 3.71
5859 6504 4.349365 GAGAAGGAGAAGGAGAAGGAGAA 58.651 47.826 0.00 0.00 0.00 2.87
5860 6505 4.352893 AGAAGGAGAAGGAGAAGGAGAAG 58.647 47.826 0.00 0.00 0.00 2.85
5861 6506 3.114643 AGGAGAAGGAGAAGGAGAAGG 57.885 52.381 0.00 0.00 0.00 3.46
5862 6507 2.657459 AGGAGAAGGAGAAGGAGAAGGA 59.343 50.000 0.00 0.00 0.00 3.36
5878 6523 3.112709 GAGAAGGCGCGTGTGGAC 61.113 66.667 8.43 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.541310 CGCGCCCATCCTAATAGGGA 61.541 60.000 6.46 0.00 45.80 4.20
37 38 2.345991 GGCGCGCCCATCCTAATA 59.654 61.111 39.89 0.00 0.00 0.98
38 39 3.832237 CTGGCGCGCCCATCCTAAT 62.832 63.158 44.42 0.00 44.33 1.73
39 40 4.545706 CTGGCGCGCCCATCCTAA 62.546 66.667 44.42 24.94 44.33 2.69
42 43 4.849310 TTACTGGCGCGCCCATCC 62.849 66.667 44.42 22.27 44.33 3.51
55 56 5.048846 TCCTTCTCAAGCTTTGGTTTACT 57.951 39.130 0.00 0.00 0.00 2.24
57 58 5.304686 TCTCCTTCTCAAGCTTTGGTTTA 57.695 39.130 0.00 0.00 0.00 2.01
102 103 1.758592 GGGTTGCAGTACACCTCCA 59.241 57.895 5.31 0.00 0.00 3.86
124 125 0.602638 TGAGCACGCACGAGGATTTT 60.603 50.000 0.00 0.00 0.00 1.82
134 135 3.667087 GGGTGAATTGAGCACGCA 58.333 55.556 0.00 0.00 45.28 5.24
135 136 0.674895 AGAGGGTGAATTGAGCACGC 60.675 55.000 0.00 0.00 46.00 5.34
152 153 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
153 154 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
154 155 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
155 156 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
157 158 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
163 164 1.421646 GAGGGAGGGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
164 165 1.010793 AGAGGGAGGGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
165 166 1.421646 GAGAGGGAGGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
166 167 1.518367 GAGAGGGAGGGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
167 168 0.108585 CGAGAGGGAGGGAGAGAGAG 59.891 65.000 0.00 0.00 0.00 3.20
168 169 2.226764 CGAGAGGGAGGGAGAGAGA 58.773 63.158 0.00 0.00 0.00 3.10
169 170 4.898607 CGAGAGGGAGGGAGAGAG 57.101 66.667 0.00 0.00 0.00 3.20
181 182 2.226437 CCATCAAACAAACCACCGAGAG 59.774 50.000 0.00 0.00 0.00 3.20
185 186 1.407258 ACACCATCAAACAAACCACCG 59.593 47.619 0.00 0.00 0.00 4.94
190 191 9.469807 TCATTTACAATACACCATCAAACAAAC 57.530 29.630 0.00 0.00 0.00 2.93
249 253 2.126463 TCGAAGTTGGCGAGCTCG 60.126 61.111 31.37 31.37 43.27 5.03
256 260 2.159296 ACAAACCAAAGTCGAAGTTGGC 60.159 45.455 22.32 0.00 46.96 4.52
273 277 4.570772 GGATCAAGCTAGTATTGCGACAAA 59.429 41.667 0.00 0.00 35.28 2.83
278 311 7.598869 TGTAATAAGGATCAAGCTAGTATTGCG 59.401 37.037 0.00 0.00 35.28 4.85
297 330 8.464404 ACACTACGCTCTACTTCATTGTAATAA 58.536 33.333 0.00 0.00 0.00 1.40
319 352 2.353406 GGTGGTCGCACTTATGTACACT 60.353 50.000 0.00 0.00 0.00 3.55
324 357 0.673644 GCAGGTGGTCGCACTTATGT 60.674 55.000 0.00 0.00 0.00 2.29
325 358 0.391661 AGCAGGTGGTCGCACTTATG 60.392 55.000 0.00 0.00 0.00 1.90
327 360 0.530744 CTAGCAGGTGGTCGCACTTA 59.469 55.000 0.00 0.00 0.00 2.24
332 365 2.167398 TTGGTCTAGCAGGTGGTCGC 62.167 60.000 0.00 0.00 0.00 5.19
335 368 0.838122 AGCTTGGTCTAGCAGGTGGT 60.838 55.000 7.11 0.00 43.68 4.16
350 383 4.908687 TGCACACACGGCGAGCTT 62.909 61.111 16.62 0.00 0.00 3.74
354 387 3.047280 GGATTGCACACACGGCGA 61.047 61.111 16.62 0.00 0.00 5.54
370 403 2.124570 CCTCCATGGCGTCCAAGG 60.125 66.667 6.96 12.22 43.08 3.61
380 413 0.320247 GCTCCTCGTATGCCTCCATG 60.320 60.000 0.00 0.00 32.85 3.66
411 444 5.177511 GCCAATACAAGGTTTTCTTTTGCTC 59.822 40.000 0.00 0.00 32.41 4.26
416 449 4.202315 GGGTGCCAATACAAGGTTTTCTTT 60.202 41.667 0.00 0.00 32.41 2.52
442 475 2.221749 GGTGACCGTCGTAAAAGGTTTC 59.778 50.000 0.00 0.00 40.14 2.78
457 490 0.390735 AGGCAAATACGTCGGTGACC 60.391 55.000 0.00 0.00 0.00 4.02
465 498 4.792521 TGGCATTTTTAGGCAAATACGT 57.207 36.364 0.00 0.00 38.71 3.57
468 501 7.044798 GGTGTAATGGCATTTTTAGGCAAATA 58.955 34.615 19.21 0.00 45.03 1.40
475 508 6.099341 GGAAGTGGTGTAATGGCATTTTTAG 58.901 40.000 19.21 0.00 0.00 1.85
476 510 5.046950 GGGAAGTGGTGTAATGGCATTTTTA 60.047 40.000 19.21 2.39 0.00 1.52
484 518 3.433306 TTGAGGGAAGTGGTGTAATGG 57.567 47.619 0.00 0.00 0.00 3.16
492 526 5.852282 TTCTTTTTCTTTGAGGGAAGTGG 57.148 39.130 0.00 0.00 0.00 4.00
555 589 7.021196 GCAAAAAGAAGAGCGTATATCACAAA 58.979 34.615 0.00 0.00 0.00 2.83
556 590 6.371548 AGCAAAAAGAAGAGCGTATATCACAA 59.628 34.615 0.00 0.00 0.00 3.33
557 591 5.874810 AGCAAAAAGAAGAGCGTATATCACA 59.125 36.000 0.00 0.00 0.00 3.58
561 595 7.652507 GGTAGTAGCAAAAAGAAGAGCGTATAT 59.347 37.037 0.00 0.00 0.00 0.86
562 596 6.976925 GGTAGTAGCAAAAAGAAGAGCGTATA 59.023 38.462 0.00 0.00 0.00 1.47
563 597 5.811100 GGTAGTAGCAAAAAGAAGAGCGTAT 59.189 40.000 0.00 0.00 0.00 3.06
566 600 3.060895 CGGTAGTAGCAAAAAGAAGAGCG 59.939 47.826 0.00 0.00 0.00 5.03
567 601 3.181519 GCGGTAGTAGCAAAAAGAAGAGC 60.182 47.826 0.00 0.00 34.19 4.09
569 603 3.007614 AGGCGGTAGTAGCAAAAAGAAGA 59.992 43.478 0.00 0.00 36.08 2.87
600 636 5.012148 GCAAAGAGGGAGGCTATGTAGAATA 59.988 44.000 0.00 0.00 0.00 1.75
610 646 0.897401 GCAAAGCAAAGAGGGAGGCT 60.897 55.000 0.00 0.00 38.45 4.58
617 653 4.082408 TCAATGGATGAGCAAAGCAAAGAG 60.082 41.667 0.00 0.00 33.04 2.85
624 660 3.253921 TGTGTGTCAATGGATGAGCAAAG 59.746 43.478 0.00 0.00 39.19 2.77
664 700 1.768275 TGATGGTAACCGATGATGGCT 59.232 47.619 0.00 0.00 0.00 4.75
713 749 0.761802 GGTAGAGAATGAGGGCAGGG 59.238 60.000 0.00 0.00 0.00 4.45
715 751 1.799933 AGGGTAGAGAATGAGGGCAG 58.200 55.000 0.00 0.00 0.00 4.85
736 772 5.893897 AGAAGATGAAACAAATGAGGAGC 57.106 39.130 0.00 0.00 0.00 4.70
745 781 4.956085 TGACGAGGAAGAAGATGAAACAA 58.044 39.130 0.00 0.00 0.00 2.83
752 788 9.253832 AGATATATCAATGACGAGGAAGAAGAT 57.746 33.333 15.08 0.00 0.00 2.40
773 809 2.705658 TGTTTGGGATCGAGGCAGATAT 59.294 45.455 0.00 0.00 0.00 1.63
778 814 1.271856 TAGTGTTTGGGATCGAGGCA 58.728 50.000 0.00 0.00 0.00 4.75
790 832 5.136828 TCAAACATGTGGTCCATAGTGTTT 58.863 37.500 18.76 18.76 31.13 2.83
793 835 5.009510 TGTTTCAAACATGTGGTCCATAGTG 59.990 40.000 0.00 0.00 36.25 2.74
821 871 7.417456 CCATGTGATGTGATGAATTTCCATTCT 60.417 37.037 0.00 0.00 39.81 2.40
871 925 6.033966 CACTTCCTTCTACGTTTTGCTTTTT 58.966 36.000 0.00 0.00 0.00 1.94
875 929 3.808174 GTCACTTCCTTCTACGTTTTGCT 59.192 43.478 0.00 0.00 0.00 3.91
876 930 3.808174 AGTCACTTCCTTCTACGTTTTGC 59.192 43.478 0.00 0.00 0.00 3.68
877 931 4.211374 CCAGTCACTTCCTTCTACGTTTTG 59.789 45.833 0.00 0.00 0.00 2.44
882 938 1.404315 GGCCAGTCACTTCCTTCTACG 60.404 57.143 0.00 0.00 0.00 3.51
884 940 1.902508 CAGGCCAGTCACTTCCTTCTA 59.097 52.381 5.01 0.00 0.00 2.10
920 976 6.596869 TGAAATCTTGGATAGGGATTTCCT 57.403 37.500 18.59 0.00 46.90 3.36
958 1016 9.874195 TTTTCAATTCCCCTTTATTTTTGGAAT 57.126 25.926 0.00 0.00 45.34 3.01
959 1017 9.874195 ATTTTCAATTCCCCTTTATTTTTGGAA 57.126 25.926 0.00 0.00 39.28 3.53
968 1026 7.256494 AGCATGAATTTTCAATTCCCCTTTA 57.744 32.000 0.00 0.00 41.13 1.85
1034 1092 6.523676 TTTGTTTTTCGATCCAATCAAAGC 57.476 33.333 0.00 0.00 0.00 3.51
1077 1135 2.521708 GGCGGATTGGGGATTGGG 60.522 66.667 0.00 0.00 0.00 4.12
1243 1301 4.301662 AAGGGGGCAGGGGGAAGA 62.302 66.667 0.00 0.00 0.00 2.87
1250 1308 4.883354 GCATCGGAAGGGGGCAGG 62.883 72.222 0.00 0.00 0.00 4.85
1326 1384 1.379977 TGAGACCTCCGGCACCTAG 60.380 63.158 0.00 0.00 0.00 3.02
1327 1385 1.379977 CTGAGACCTCCGGCACCTA 60.380 63.158 0.00 0.00 0.00 3.08
1328 1386 2.681778 CTGAGACCTCCGGCACCT 60.682 66.667 0.00 0.00 0.00 4.00
1329 1387 2.997897 ACTGAGACCTCCGGCACC 60.998 66.667 0.00 0.00 0.00 5.01
1330 1388 2.262915 CACTGAGACCTCCGGCAC 59.737 66.667 0.00 0.00 0.00 5.01
1331 1389 2.997315 CCACTGAGACCTCCGGCA 60.997 66.667 0.00 0.00 0.00 5.69
1332 1390 2.997897 ACCACTGAGACCTCCGGC 60.998 66.667 0.00 0.00 0.00 6.13
1333 1391 2.973899 CACCACTGAGACCTCCGG 59.026 66.667 0.00 0.00 0.00 5.14
1334 1392 2.262915 GCACCACTGAGACCTCCG 59.737 66.667 0.00 0.00 0.00 4.63
1335 1393 2.262915 CGCACCACTGAGACCTCC 59.737 66.667 0.00 0.00 0.00 4.30
1336 1394 2.262915 CCGCACCACTGAGACCTC 59.737 66.667 0.00 0.00 0.00 3.85
1337 1395 4.008933 GCCGCACCACTGAGACCT 62.009 66.667 0.00 0.00 0.00 3.85
1338 1396 3.941657 GAGCCGCACCACTGAGACC 62.942 68.421 0.00 0.00 0.00 3.85
1339 1397 1.595993 TAGAGCCGCACCACTGAGAC 61.596 60.000 0.00 0.00 0.00 3.36
1340 1398 1.304134 TAGAGCCGCACCACTGAGA 60.304 57.895 0.00 0.00 0.00 3.27
1341 1399 1.153745 GTAGAGCCGCACCACTGAG 60.154 63.158 0.00 0.00 0.00 3.35
1342 1400 1.595993 GAGTAGAGCCGCACCACTGA 61.596 60.000 0.00 0.00 0.00 3.41
1567 1639 0.250234 CGGAGCCAGAGACCATGAAA 59.750 55.000 0.00 0.00 0.00 2.69
1585 1657 1.720694 AAACCACCAAACGGACAGCG 61.721 55.000 0.00 0.00 0.00 5.18
1592 1664 4.153475 CAGTCCAGTATAAACCACCAAACG 59.847 45.833 0.00 0.00 0.00 3.60
1679 1754 1.544691 GTGAAGACCTCGAGGCTGTTA 59.455 52.381 31.56 12.59 39.32 2.41
1688 1763 1.827969 AGGAGAATGGTGAAGACCTCG 59.172 52.381 0.00 0.00 43.58 4.63
1751 1826 5.204673 CGGAGCAAGTACAGTCATTTAAC 57.795 43.478 0.00 0.00 0.00 2.01
1813 1895 9.352784 GCAAATTAAACAGCACATCATAAAGTA 57.647 29.630 0.00 0.00 0.00 2.24
1814 1896 8.090214 AGCAAATTAAACAGCACATCATAAAGT 58.910 29.630 0.00 0.00 0.00 2.66
1867 1949 6.036953 CAGCAAGCTAAAACAACATTGGAAAA 59.963 34.615 0.00 0.00 0.00 2.29
1936 2023 7.744087 AGCAAAGTTACATATGAACTCACAA 57.256 32.000 10.38 0.00 36.10 3.33
1955 2042 2.642311 TGGAGACAACCATCCTAGCAAA 59.358 45.455 0.00 0.00 37.44 3.68
1972 2059 4.010349 GTTCAAACATCCCTTAGGTGGAG 58.990 47.826 0.00 0.00 34.80 3.86
1986 2073 6.321181 AGTTTAGCTTCCTGAATGTTCAAACA 59.679 34.615 0.00 0.00 44.06 2.83
1990 2077 6.061441 TCAAGTTTAGCTTCCTGAATGTTCA 58.939 36.000 0.00 0.00 34.69 3.18
1994 2081 6.038714 GGGTATCAAGTTTAGCTTCCTGAATG 59.961 42.308 0.00 0.00 34.69 2.67
1995 2082 6.122964 GGGTATCAAGTTTAGCTTCCTGAAT 58.877 40.000 0.00 0.00 34.69 2.57
2002 2089 4.514401 CGAAGGGGTATCAAGTTTAGCTT 58.486 43.478 0.00 0.00 38.08 3.74
2003 2090 3.681874 GCGAAGGGGTATCAAGTTTAGCT 60.682 47.826 0.00 0.00 0.00 3.32
2008 2095 1.628846 ACAGCGAAGGGGTATCAAGTT 59.371 47.619 0.00 0.00 0.00 2.66
2018 2105 2.280628 GTTCCATTCTACAGCGAAGGG 58.719 52.381 0.00 0.00 44.08 3.95
2041 2128 7.758076 TGAGAAATTTCATTAAGCATGAAGCAG 59.242 33.333 19.99 0.00 46.43 4.24
2057 2144 8.801913 GCAAGTATGTTAATGCTGAGAAATTTC 58.198 33.333 10.33 10.33 35.93 2.17
2112 2203 4.271049 ACTGGATTCGAACAGAAATATGCG 59.729 41.667 19.35 0.00 42.91 4.73
2146 2238 8.571336 AGGAATTGAAATTACTCTTCAAGTGTG 58.429 33.333 2.22 0.00 43.89 3.82
2147 2239 8.697507 AGGAATTGAAATTACTCTTCAAGTGT 57.302 30.769 3.30 0.00 43.89 3.55
2160 2252 6.917217 TTTGTTTTGCGAGGAATTGAAATT 57.083 29.167 0.00 0.00 0.00 1.82
2171 2263 5.499176 GCAAGTCTTCTTTTTGTTTTGCGAG 60.499 40.000 0.00 0.00 31.71 5.03
2172 2264 4.326009 GCAAGTCTTCTTTTTGTTTTGCGA 59.674 37.500 0.00 0.00 31.71 5.10
2173 2265 4.327087 AGCAAGTCTTCTTTTTGTTTTGCG 59.673 37.500 0.00 0.00 43.10 4.85
2174 2266 5.784750 AGCAAGTCTTCTTTTTGTTTTGC 57.215 34.783 0.00 0.00 39.79 3.68
2185 2277 6.294397 CCAAGCTATTTGAAAGCAAGTCTTCT 60.294 38.462 0.00 0.00 42.62 2.85
2188 2282 4.829492 ACCAAGCTATTTGAAAGCAAGTCT 59.171 37.500 0.00 0.00 42.62 3.24
2250 2375 6.045459 TGTGGCCAGGATACCTAATGATAATT 59.955 38.462 5.11 0.00 29.64 1.40
2457 2582 5.351465 CCTTAGGATACACACAACACATGAC 59.649 44.000 0.00 0.00 41.41 3.06
2461 2586 4.967084 ACCTTAGGATACACACAACACA 57.033 40.909 4.77 0.00 41.41 3.72
2462 2587 5.529800 ACAAACCTTAGGATACACACAACAC 59.470 40.000 4.77 0.00 41.41 3.32
2463 2588 5.686753 ACAAACCTTAGGATACACACAACA 58.313 37.500 4.77 0.00 41.41 3.33
2464 2589 6.628919 AACAAACCTTAGGATACACACAAC 57.371 37.500 4.77 0.00 41.41 3.32
2465 2590 7.057894 AGAAACAAACCTTAGGATACACACAA 58.942 34.615 4.77 0.00 41.41 3.33
2496 2641 7.021196 CACTCGTCATAAAAACCATAAACCTG 58.979 38.462 0.00 0.00 0.00 4.00
2744 2892 6.003326 TGAGCCAAAAGTGAATAGAATGACA 58.997 36.000 0.00 0.00 0.00 3.58
2773 2921 8.024865 CAGTGTAAATGAAAGCATCAATTCAGA 58.975 33.333 0.00 0.00 42.54 3.27
2888 3036 8.884124 TCAAAGGGAAATTAGATGATTGAACT 57.116 30.769 0.00 0.00 0.00 3.01
2904 3052 4.783227 ACATAGGAAGCTACTCAAAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2924 3072 4.947388 ACTGGTACACACTTCAAACAACAT 59.053 37.500 0.00 0.00 0.00 2.71
2937 3086 4.817318 TTGATGATGCTACTGGTACACA 57.183 40.909 0.00 0.00 0.00 3.72
2958 3123 6.958767 AGTACACTAGGAGCCATGTATTTTT 58.041 36.000 0.00 0.00 30.67 1.94
2964 3129 8.171400 AGTATTATAGTACACTAGGAGCCATGT 58.829 37.037 8.00 0.00 0.00 3.21
2965 3130 8.582657 AGTATTATAGTACACTAGGAGCCATG 57.417 38.462 8.00 0.00 0.00 3.66
2966 3131 7.835181 GGAGTATTATAGTACACTAGGAGCCAT 59.165 40.741 8.00 0.00 0.00 4.40
2968 3133 6.602803 GGGAGTATTATAGTACACTAGGAGCC 59.397 46.154 8.00 0.00 0.00 4.70
2969 3134 7.173722 TGGGAGTATTATAGTACACTAGGAGC 58.826 42.308 8.00 0.00 0.00 4.70
2972 3137 9.179909 CAGATGGGAGTATTATAGTACACTAGG 57.820 40.741 8.00 0.00 0.00 3.02
2973 3138 9.742144 ACAGATGGGAGTATTATAGTACACTAG 57.258 37.037 8.00 0.00 0.00 2.57
2978 3143 9.080097 AGACAACAGATGGGAGTATTATAGTAC 57.920 37.037 0.00 0.00 0.00 2.73
2980 3145 8.554490 AAGACAACAGATGGGAGTATTATAGT 57.446 34.615 0.00 0.00 0.00 2.12
2981 3146 8.642432 TGAAGACAACAGATGGGAGTATTATAG 58.358 37.037 0.00 0.00 0.00 1.31
2982 3147 8.547481 TGAAGACAACAGATGGGAGTATTATA 57.453 34.615 0.00 0.00 0.00 0.98
2983 3148 7.437713 TGAAGACAACAGATGGGAGTATTAT 57.562 36.000 0.00 0.00 0.00 1.28
2984 3149 6.867519 TGAAGACAACAGATGGGAGTATTA 57.132 37.500 0.00 0.00 0.00 0.98
2985 3150 5.762179 TGAAGACAACAGATGGGAGTATT 57.238 39.130 0.00 0.00 0.00 1.89
2986 3151 5.190528 ACATGAAGACAACAGATGGGAGTAT 59.809 40.000 0.00 0.00 0.00 2.12
2987 3152 4.532126 ACATGAAGACAACAGATGGGAGTA 59.468 41.667 0.00 0.00 0.00 2.59
2988 3153 3.328931 ACATGAAGACAACAGATGGGAGT 59.671 43.478 0.00 0.00 0.00 3.85
2989 3154 3.688185 CACATGAAGACAACAGATGGGAG 59.312 47.826 0.00 0.00 0.00 4.30
2992 3157 3.678289 TCCACATGAAGACAACAGATGG 58.322 45.455 0.00 0.00 0.00 3.51
2993 3158 5.182570 ACAATCCACATGAAGACAACAGATG 59.817 40.000 0.00 0.00 0.00 2.90
2994 3159 5.319453 ACAATCCACATGAAGACAACAGAT 58.681 37.500 0.00 0.00 0.00 2.90
3003 3371 5.954296 AACAGAAGACAATCCACATGAAG 57.046 39.130 0.00 0.00 0.00 3.02
3015 3383 7.055667 ACAAAGATGACTCTAACAGAAGACA 57.944 36.000 0.00 0.00 0.00 3.41
3052 3428 9.567776 TGTGAAGTCTATTTTTATCACCAAAGA 57.432 29.630 0.00 0.00 37.07 2.52
3053 3429 9.612620 GTGTGAAGTCTATTTTTATCACCAAAG 57.387 33.333 0.00 0.00 37.07 2.77
3056 3432 6.370442 CGGTGTGAAGTCTATTTTTATCACCA 59.630 38.462 0.00 0.00 40.76 4.17
3070 3446 3.863424 CCACATATGTACGGTGTGAAGTC 59.137 47.826 20.19 0.00 44.48 3.01
3075 3451 3.063452 GCTTTCCACATATGTACGGTGTG 59.937 47.826 8.32 14.58 42.10 3.82
3076 3452 3.267483 GCTTTCCACATATGTACGGTGT 58.733 45.455 8.32 0.33 0.00 4.16
3079 3455 1.864711 CCGCTTTCCACATATGTACGG 59.135 52.381 8.32 6.97 0.00 4.02
3089 3466 1.798813 CACAGAAGTACCGCTTTCCAC 59.201 52.381 0.00 0.00 37.59 4.02
3092 3469 3.808174 AGTTTCACAGAAGTACCGCTTTC 59.192 43.478 0.00 0.00 37.59 2.62
3107 3484 5.254901 TCTCCTCCTAGTGAGTAGTTTCAC 58.745 45.833 7.27 0.00 46.14 3.18
3110 3487 5.894653 AGTTCTCCTCCTAGTGAGTAGTTT 58.105 41.667 7.27 0.00 39.65 2.66
3120 3497 6.773200 TCACATACACATAGTTCTCCTCCTAG 59.227 42.308 0.00 0.00 0.00 3.02
3129 3511 9.722056 GGAAATCAAATCACATACACATAGTTC 57.278 33.333 0.00 0.00 0.00 3.01
3130 3512 8.686334 GGGAAATCAAATCACATACACATAGTT 58.314 33.333 0.00 0.00 0.00 2.24
3135 3517 6.009589 ACAGGGAAATCAAATCACATACACA 58.990 36.000 0.00 0.00 0.00 3.72
3136 3518 6.515272 ACAGGGAAATCAAATCACATACAC 57.485 37.500 0.00 0.00 0.00 2.90
3142 3524 9.342308 TCTCATATAACAGGGAAATCAAATCAC 57.658 33.333 0.00 0.00 0.00 3.06
3149 3531 7.067496 TCCAGTCTCATATAACAGGGAAATC 57.933 40.000 0.00 0.00 0.00 2.17
3150 3532 6.465035 GCTCCAGTCTCATATAACAGGGAAAT 60.465 42.308 0.00 0.00 0.00 2.17
3151 3533 5.163301 GCTCCAGTCTCATATAACAGGGAAA 60.163 44.000 0.00 0.00 0.00 3.13
3154 3536 3.305676 CGCTCCAGTCTCATATAACAGGG 60.306 52.174 0.00 0.00 0.00 4.45
3174 3557 0.517316 CTGGGCACTGTCTTAAACGC 59.483 55.000 0.00 0.00 0.00 4.84
3259 3646 6.150976 AGGAATTTCACAGTTGCGATCAATTA 59.849 34.615 0.00 0.00 34.29 1.40
3557 3944 2.029828 CGGAGAGCTCACAGTTACAAGT 60.030 50.000 17.77 0.00 0.00 3.16
3569 3956 2.924290 GACATGTGTAAACGGAGAGCTC 59.076 50.000 1.15 5.27 0.00 4.09
3578 3965 4.150980 TCGGACAATTCGACATGTGTAAAC 59.849 41.667 1.15 0.00 0.00 2.01
3704 4092 6.074088 CCATAGTTTCGCTGAAGCTTAGTATG 60.074 42.308 0.00 5.07 35.01 2.39
3737 4125 5.958380 ACTAAGTCTGGTAGTGATGATGGAA 59.042 40.000 0.00 0.00 30.52 3.53
3811 4199 9.252962 GCAATAAAGCATGTCTAGCAAATTATT 57.747 29.630 0.00 0.00 0.00 1.40
3837 4225 7.358352 CGAACGGATTCTTGAAATTTTTGAAGG 60.358 37.037 3.05 0.00 33.13 3.46
3846 4234 5.475719 TGAGTACGAACGGATTCTTGAAAT 58.524 37.500 3.87 0.00 32.12 2.17
3856 4244 2.029739 TCAAAGCATGAGTACGAACGGA 60.030 45.455 0.00 0.00 33.04 4.69
3857 4245 2.333926 TCAAAGCATGAGTACGAACGG 58.666 47.619 0.00 0.00 33.04 4.44
3863 4251 4.508124 CGGAACCTATCAAAGCATGAGTAC 59.492 45.833 0.00 0.00 42.53 2.73
3870 4258 2.565391 TCTGACGGAACCTATCAAAGCA 59.435 45.455 0.00 0.00 0.00 3.91
3886 4274 6.752815 CCGATAGACTAAAGAAGGTTTCTGAC 59.247 42.308 0.00 0.00 38.22 3.51
3888 4276 6.531948 CACCGATAGACTAAAGAAGGTTTCTG 59.468 42.308 0.00 0.00 38.22 3.02
3889 4277 6.436532 TCACCGATAGACTAAAGAAGGTTTCT 59.563 38.462 0.00 0.00 39.66 2.52
3901 4289 8.371571 TCACTATATACCTCACCGATAGACTA 57.628 38.462 0.00 0.00 39.76 2.59
3944 4332 4.591321 TCAAAAGCTCCAGGGTTCATAT 57.409 40.909 0.00 0.00 34.22 1.78
3952 4340 4.699257 GGATATGCTATCAAAAGCTCCAGG 59.301 45.833 0.00 0.00 43.19 4.45
3954 4342 5.072193 TCTGGATATGCTATCAAAAGCTCCA 59.928 40.000 0.00 5.52 40.25 3.86
3961 4349 7.237471 TGTTCCCTATCTGGATATGCTATCAAA 59.763 37.037 0.00 0.00 38.35 2.69
3962 4350 6.730507 TGTTCCCTATCTGGATATGCTATCAA 59.269 38.462 0.00 0.00 38.35 2.57
3967 4355 4.234550 TGTGTTCCCTATCTGGATATGCT 58.765 43.478 0.00 0.00 38.35 3.79
3982 4370 1.255667 TACTCCGGAGCCTGTGTTCC 61.256 60.000 31.56 0.00 38.44 3.62
3988 4376 2.158784 AGTACTACTACTCCGGAGCCTG 60.159 54.545 31.56 22.00 0.00 4.85
3990 4378 2.636647 AGTACTACTACTCCGGAGCC 57.363 55.000 31.56 8.85 0.00 4.70
3994 4382 4.987912 GCAGTACTAGTACTACTACTCCGG 59.012 50.000 30.34 17.73 43.98 5.14
3997 4385 6.018832 GTGCTGCAGTACTAGTACTACTACTC 60.019 46.154 30.34 18.45 43.98 2.59
3998 4386 5.816777 GTGCTGCAGTACTAGTACTACTACT 59.183 44.000 30.34 11.20 43.98 2.57
3999 4387 5.583854 TGTGCTGCAGTACTAGTACTACTAC 59.416 44.000 30.34 23.29 43.98 2.73
4001 4389 4.586884 TGTGCTGCAGTACTAGTACTACT 58.413 43.478 30.34 12.65 43.98 2.57
4002 4390 4.959596 TGTGCTGCAGTACTAGTACTAC 57.040 45.455 30.34 25.89 43.98 2.73
4058 4474 6.493802 TCAAGAGTACACAGAAATACAGGAGT 59.506 38.462 0.00 0.00 0.00 3.85
4088 4504 8.521176 TCAGACTCCTATTACTGTTAGTTTGTC 58.479 37.037 0.00 0.00 0.00 3.18
4106 4522 7.457024 AGACTAAGTTACTTCTTCAGACTCC 57.543 40.000 0.00 0.00 0.00 3.85
4120 4536 8.621532 TCGGTTGTTTACTCTAGACTAAGTTA 57.378 34.615 0.00 0.00 0.00 2.24
4122 4538 7.516198 TTCGGTTGTTTACTCTAGACTAAGT 57.484 36.000 0.00 0.00 0.00 2.24
4123 4539 9.719279 CTATTCGGTTGTTTACTCTAGACTAAG 57.281 37.037 0.00 0.00 0.00 2.18
4130 4546 7.177216 TCAGGTTCTATTCGGTTGTTTACTCTA 59.823 37.037 0.00 0.00 0.00 2.43
4138 4554 5.187967 AGAATCTCAGGTTCTATTCGGTTGT 59.812 40.000 0.00 0.00 34.32 3.32
4142 4558 5.300539 TCTCAGAATCTCAGGTTCTATTCGG 59.699 44.000 0.00 0.00 34.32 4.30
4143 4559 6.384258 TCTCAGAATCTCAGGTTCTATTCG 57.616 41.667 0.00 0.00 34.32 3.34
4144 4560 7.069331 TCCTTCTCAGAATCTCAGGTTCTATTC 59.931 40.741 0.00 0.00 34.32 1.75
4149 4565 5.175127 GTTCCTTCTCAGAATCTCAGGTTC 58.825 45.833 0.00 0.00 0.00 3.62
4150 4566 4.594920 TGTTCCTTCTCAGAATCTCAGGTT 59.405 41.667 0.00 0.00 0.00 3.50
4174 4590 0.613012 GCTTGGGAGCTGGAATGGTT 60.613 55.000 0.00 0.00 45.65 3.67
4187 4603 2.808543 GTTGACAAGTCTACAGCTTGGG 59.191 50.000 9.37 0.00 45.38 4.12
4203 4619 2.923020 CCACACTTGCTTGTTTGTTGAC 59.077 45.455 0.00 0.00 0.00 3.18
4204 4620 2.673610 GCCACACTTGCTTGTTTGTTGA 60.674 45.455 0.00 0.00 0.00 3.18
4208 4624 2.298411 AAGCCACACTTGCTTGTTTG 57.702 45.000 0.00 0.00 46.76 2.93
4217 4633 2.028876 GTTACCAACCAAGCCACACTT 58.971 47.619 0.00 0.00 40.05 3.16
4219 4635 1.394618 TGTTACCAACCAAGCCACAC 58.605 50.000 0.00 0.00 0.00 3.82
4247 4663 2.409870 GGGAAAGATGGCAGGCACG 61.410 63.158 0.00 0.00 0.00 5.34
4346 4762 8.759481 TGAAAAGCATGGTATGGATAATAACA 57.241 30.769 0.00 0.00 42.69 2.41
4347 4763 8.850156 ACTGAAAAGCATGGTATGGATAATAAC 58.150 33.333 0.00 0.00 0.00 1.89
4348 4764 8.995027 ACTGAAAAGCATGGTATGGATAATAA 57.005 30.769 0.00 0.00 0.00 1.40
4349 4765 7.665559 GGACTGAAAAGCATGGTATGGATAATA 59.334 37.037 0.00 0.00 0.00 0.98
4350 4766 6.491403 GGACTGAAAAGCATGGTATGGATAAT 59.509 38.462 0.00 0.00 0.00 1.28
4355 4776 3.379372 CAGGACTGAAAAGCATGGTATGG 59.621 47.826 0.00 0.00 0.00 2.74
4414 4862 9.503427 GTTAAAAGGGTCGATAAAATCATCAAG 57.497 33.333 0.00 0.00 0.00 3.02
4417 4865 8.343366 GGAGTTAAAAGGGTCGATAAAATCATC 58.657 37.037 0.00 0.00 0.00 2.92
4420 4868 6.314648 ACGGAGTTAAAAGGGTCGATAAAATC 59.685 38.462 0.00 0.00 37.78 2.17
4463 4911 2.678836 TCGTCCGTCTCTGAAGATCTTC 59.321 50.000 25.68 25.68 39.91 2.87
4572 5022 3.189287 GGAGCTACAACAATGAACACCAG 59.811 47.826 0.00 0.00 0.00 4.00
4593 5043 2.693762 CGAATGCACTGTGGGCTGG 61.694 63.158 10.21 0.00 0.00 4.85
4608 5058 4.883006 TCAAAATGCATCAGATGATCCGAA 59.117 37.500 15.12 0.00 31.21 4.30
4611 5061 7.169308 GTGAAATCAAAATGCATCAGATGATCC 59.831 37.037 15.12 0.00 31.21 3.36
4629 5079 3.071479 GTTAAGACAGGCGGTGAAATCA 58.929 45.455 0.00 0.00 0.00 2.57
4641 5093 3.990092 TGTACACAGCAGGTTAAGACAG 58.010 45.455 0.00 0.00 0.00 3.51
4658 5110 6.814146 GCTATGCTCCCAGTAATCTATTGTAC 59.186 42.308 0.00 0.00 0.00 2.90
4691 5143 0.747852 GAAGGACAAAAACGGGGCAA 59.252 50.000 0.00 0.00 0.00 4.52
4692 5144 0.395862 TGAAGGACAAAAACGGGGCA 60.396 50.000 0.00 0.00 0.00 5.36
4699 5151 4.079253 GGACAGGCTATGAAGGACAAAAA 58.921 43.478 0.00 0.00 0.00 1.94
4713 5165 0.838122 AGCTTAGGTGTGGACAGGCT 60.838 55.000 0.00 0.00 0.00 4.58
4731 5183 9.612620 GTTGGTTCTAAAATACAGAATTGTGAG 57.387 33.333 9.96 0.00 38.23 3.51
4733 5185 9.965824 AAGTTGGTTCTAAAATACAGAATTGTG 57.034 29.630 0.13 0.13 38.23 3.33
4734 5186 9.965824 CAAGTTGGTTCTAAAATACAGAATTGT 57.034 29.630 0.00 0.00 41.39 2.71
4824 5284 1.725641 CTGAGCAAGATACAACGCCA 58.274 50.000 0.00 0.00 0.00 5.69
4828 5288 3.329386 TGACTGCTGAGCAAGATACAAC 58.671 45.455 9.07 0.00 38.41 3.32
4865 5328 2.685897 GCCGTGGAATTTAACTATGGCA 59.314 45.455 0.00 0.00 45.73 4.92
4867 5330 3.199677 TCGCCGTGGAATTTAACTATGG 58.800 45.455 0.00 0.00 0.00 2.74
4870 5333 3.002102 GGTTCGCCGTGGAATTTAACTA 58.998 45.455 0.00 0.00 0.00 2.24
4882 5345 1.243902 AAAATGTCATGGTTCGCCGT 58.756 45.000 0.00 0.00 41.18 5.68
4946 5427 6.094186 GGAAAAGACCCATCTGTTACTGAATC 59.906 42.308 0.00 0.00 32.04 2.52
4972 5453 1.302511 AGATTGCGGTTTCCAGCGT 60.303 52.632 0.00 0.00 45.98 5.07
4974 5455 0.169009 GACAGATTGCGGTTTCCAGC 59.831 55.000 0.00 0.00 0.00 4.85
4986 5467 0.035317 TCTGCGTTGCCAGACAGATT 59.965 50.000 0.00 0.00 36.96 2.40
5001 5485 9.065871 GTATTGTTTACATTTCAGTGAATCTGC 57.934 33.333 6.36 0.00 43.32 4.26
5014 5498 9.240159 GTTTTTCAGTTCGGTATTGTTTACATT 57.760 29.630 0.00 0.00 0.00 2.71
5029 5523 7.368059 AGGATTTCGTTATGGTTTTTCAGTTC 58.632 34.615 0.00 0.00 0.00 3.01
5051 5545 0.606096 TTCGCATCTCGGTTGAAGGA 59.394 50.000 0.00 0.00 39.05 3.36
5052 5546 1.656652 ATTCGCATCTCGGTTGAAGG 58.343 50.000 0.00 0.00 39.05 3.46
5115 5614 2.622436 CAGCTTGGGACTAACTAGCAC 58.378 52.381 0.00 0.00 34.37 4.40
5124 5623 0.407139 AAATGAGGCAGCTTGGGACT 59.593 50.000 0.00 0.00 0.00 3.85
5153 5652 5.129815 TGAGACTAGGAGGAGAGAACTAGAC 59.870 48.000 0.00 0.00 37.09 2.59
5171 5670 0.622665 CTTCCTGGGCCAATGAGACT 59.377 55.000 8.04 0.00 0.00 3.24
5172 5671 0.620556 TCTTCCTGGGCCAATGAGAC 59.379 55.000 8.04 0.00 0.00 3.36
5174 5673 0.750911 GCTCTTCCTGGGCCAATGAG 60.751 60.000 8.04 11.88 0.00 2.90
5199 5698 0.528684 CGATGGTCCGGAAGAAGAGC 60.529 60.000 5.23 0.00 0.00 4.09
5228 5732 1.493772 TTGGTGACAGCGTCTAAACG 58.506 50.000 9.49 0.00 44.29 3.60
5295 5800 1.442857 CGTGGAGTCAGACGACAGC 60.443 63.158 7.93 0.00 45.23 4.40
5327 5956 2.359975 CGGGGTTTGTCTCCAGCC 60.360 66.667 0.00 0.00 36.19 4.85
5367 5996 2.267324 GCCAGCCTCACTCCTGAC 59.733 66.667 0.00 0.00 0.00 3.51
5386 6025 1.539157 CAACTCCAAGCCTTCCTTCC 58.461 55.000 0.00 0.00 0.00 3.46
5431 6070 5.734503 GCCAGGCTAAATACATTCTTGCTTC 60.735 44.000 3.29 0.00 0.00 3.86
5432 6071 4.098501 GCCAGGCTAAATACATTCTTGCTT 59.901 41.667 3.29 0.00 0.00 3.91
5480 6119 4.996434 CCCTCCATCGCCGCCATC 62.996 72.222 0.00 0.00 0.00 3.51
5645 6290 3.005578 GTCTGTCTACCTTGACGACCTTT 59.994 47.826 0.00 0.00 39.64 3.11
5667 6312 1.141449 CGGAGCCTCTGAGAGCAAG 59.859 63.158 16.74 0.00 0.00 4.01
5672 6317 1.077357 GGAGACGGAGCCTCTGAGA 60.077 63.158 7.73 0.00 0.00 3.27
5683 6328 0.905357 AAGAACTGGGATGGAGACGG 59.095 55.000 0.00 0.00 0.00 4.79
5684 6329 1.406069 CCAAGAACTGGGATGGAGACG 60.406 57.143 0.00 0.00 42.17 4.18
5696 6341 1.308998 CAAGCCGAACACCAAGAACT 58.691 50.000 0.00 0.00 0.00 3.01
5698 6343 1.403679 CAACAAGCCGAACACCAAGAA 59.596 47.619 0.00 0.00 0.00 2.52
5709 6354 4.449068 GGATATCATCAGTACAACAAGCCG 59.551 45.833 4.83 0.00 0.00 5.52
5710 6355 5.237344 GTGGATATCATCAGTACAACAAGCC 59.763 44.000 4.83 0.00 0.00 4.35
5715 6360 4.745125 CACGGTGGATATCATCAGTACAAC 59.255 45.833 4.83 0.00 0.00 3.32
5719 6364 3.320826 CACCACGGTGGATATCATCAGTA 59.679 47.826 32.72 0.00 40.96 2.74
5720 6365 2.103094 CACCACGGTGGATATCATCAGT 59.897 50.000 32.72 3.89 40.96 3.41
5721 6366 2.365293 TCACCACGGTGGATATCATCAG 59.635 50.000 32.72 10.57 45.43 2.90
5728 6373 1.594833 GCAGTCACCACGGTGGATA 59.405 57.895 32.72 16.99 45.43 2.59
5732 6377 3.337889 CACGCAGTCACCACGGTG 61.338 66.667 10.09 10.09 41.61 4.94
5841 6486 2.657459 TCCTTCTCCTTCTCCTTCTCCT 59.343 50.000 0.00 0.00 0.00 3.69
5856 6501 2.262915 CACGCGCCTTCTCCTTCT 59.737 61.111 5.73 0.00 0.00 2.85
5857 6502 2.048127 ACACGCGCCTTCTCCTTC 60.048 61.111 5.73 0.00 0.00 3.46
5858 6503 2.357517 CACACGCGCCTTCTCCTT 60.358 61.111 5.73 0.00 0.00 3.36
5859 6504 4.379243 CCACACGCGCCTTCTCCT 62.379 66.667 5.73 0.00 0.00 3.69
5860 6505 4.373116 TCCACACGCGCCTTCTCC 62.373 66.667 5.73 0.00 0.00 3.71
5861 6506 3.112709 GTCCACACGCGCCTTCTC 61.113 66.667 5.73 0.00 0.00 2.87
5862 6507 4.681978 GGTCCACACGCGCCTTCT 62.682 66.667 5.73 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.