Multiple sequence alignment - TraesCS1B01G392700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G392700 chr1B 100.000 4505 0 0 1 4505 625906332 625910836 0.000000e+00 8320.0
1 TraesCS1B01G392700 chr1B 87.582 612 48 17 3866 4461 460271910 460271311 0.000000e+00 684.0
2 TraesCS1B01G392700 chr1B 87.774 548 38 4 3868 4387 68247680 68247134 8.280000e-172 614.0
3 TraesCS1B01G392700 chr1B 81.707 246 43 2 2115 2359 625908314 625908558 2.120000e-48 204.0
4 TraesCS1B01G392700 chr1B 81.707 246 43 2 1983 2227 625908446 625908690 2.120000e-48 204.0
5 TraesCS1B01G392700 chr1B 92.199 141 11 0 4365 4505 460271304 460271164 2.750000e-47 200.0
6 TraesCS1B01G392700 chr1B 86.466 133 18 0 1533 1665 625907681 625907813 3.630000e-31 147.0
7 TraesCS1B01G392700 chr1B 86.466 133 18 0 1350 1482 625907864 625907996 3.630000e-31 147.0
8 TraesCS1B01G392700 chr1B 92.537 67 5 0 1271 1337 168510365 168510299 3.710000e-16 97.1
9 TraesCS1B01G392700 chr1B 83.117 77 13 0 1876 1952 625908075 625908151 2.250000e-08 71.3
10 TraesCS1B01G392700 chr1B 83.117 77 13 0 1744 1820 625908207 625908283 2.250000e-08 71.3
11 TraesCS1B01G392700 chr1D 91.824 3131 172 30 539 3647 455121520 455124588 0.000000e+00 4287.0
12 TraesCS1B01G392700 chr1D 87.296 614 61 11 3868 4465 37886134 37886746 0.000000e+00 686.0
13 TraesCS1B01G392700 chr1D 82.792 308 27 16 221 505 455119981 455120285 7.480000e-63 252.0
14 TraesCS1B01G392700 chr1D 83.951 243 39 0 2747 2989 455123498 455123740 2.710000e-57 233.0
15 TraesCS1B01G392700 chr1D 81.224 245 46 0 2115 2359 455122920 455123164 9.880000e-47 198.0
16 TraesCS1B01G392700 chr1D 81.301 246 44 2 1983 2227 455123052 455123296 9.880000e-47 198.0
17 TraesCS1B01G392700 chr1D 88.793 116 13 0 1379 1494 455122511 455122626 4.700000e-30 143.0
18 TraesCS1B01G392700 chr1D 84.000 150 13 3 4356 4505 37886740 37886878 2.830000e-27 134.0
19 TraesCS1B01G392700 chr1D 83.969 131 15 6 100 226 445329827 445329955 2.200000e-23 121.0
20 TraesCS1B01G392700 chr1D 87.500 48 3 3 3625 3670 467613922 467613876 8.000000e-03 52.8
21 TraesCS1B01G392700 chr1A 90.291 2441 139 44 245 2645 549060869 549063251 0.000000e+00 3105.0
22 TraesCS1B01G392700 chr1A 90.741 972 58 19 2694 3646 549063246 549064204 0.000000e+00 1267.0
23 TraesCS1B01G392700 chr1A 88.127 598 39 16 3896 4465 57962140 57961547 0.000000e+00 682.0
24 TraesCS1B01G392700 chr1A 81.301 246 44 2 1983 2227 549062733 549062977 9.880000e-47 198.0
25 TraesCS1B01G392700 chr1A 87.586 145 18 0 1350 1494 549062163 549062307 7.750000e-38 169.0
26 TraesCS1B01G392700 chr1A 100.000 28 0 0 1791 1818 549062541 549062568 8.000000e-03 52.8
27 TraesCS1B01G392700 chr5A 90.296 608 39 8 3868 4465 271053935 271054532 0.000000e+00 778.0
28 TraesCS1B01G392700 chr5A 87.333 150 9 4 4356 4505 271054526 271054665 3.610000e-36 163.0
29 TraesCS1B01G392700 chr4B 87.427 517 35 4 3899 4387 612490178 612490692 6.540000e-158 568.0
30 TraesCS1B01G392700 chr4B 92.000 150 11 1 4356 4505 612490731 612490879 4.570000e-50 209.0
31 TraesCS1B01G392700 chr3D 84.740 616 38 13 3877 4465 382754750 382755336 2.350000e-157 566.0
32 TraesCS1B01G392700 chr3D 90.667 150 13 1 4356 4505 382755330 382755478 9.880000e-47 198.0
33 TraesCS1B01G392700 chr7B 90.049 412 27 5 4084 4482 462813888 462814298 5.160000e-144 521.0
34 TraesCS1B01G392700 chr4A 86.582 395 40 1 4084 4465 608583968 608584362 1.500000e-114 424.0
35 TraesCS1B01G392700 chr4A 92.553 188 12 2 3867 4053 608583584 608583770 7.430000e-68 268.0
36 TraesCS1B01G392700 chr6A 91.892 185 14 1 3870 4053 599799888 599800072 1.610000e-64 257.0
37 TraesCS1B01G392700 chr6A 91.057 123 11 0 4367 4489 558606805 558606683 2.790000e-37 167.0
38 TraesCS1B01G392700 chr3B 91.444 187 15 1 3868 4053 130114903 130115089 5.780000e-64 255.0
39 TraesCS1B01G392700 chr3B 90.374 187 17 1 3868 4053 130116089 130115903 1.250000e-60 244.0
40 TraesCS1B01G392700 chr2B 90.374 187 17 1 3868 4053 298515683 298515497 1.250000e-60 244.0
41 TraesCS1B01G392700 chr7D 89.011 91 10 0 1 91 614311083 614311173 3.680000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G392700 chr1B 625906332 625910836 4504 False 1309.228571 8320 86.082857 1 4505 7 chr1B.!!$F1 4504
1 TraesCS1B01G392700 chr1B 68247134 68247680 546 True 614.000000 614 87.774000 3868 4387 1 chr1B.!!$R1 519
2 TraesCS1B01G392700 chr1B 460271164 460271910 746 True 442.000000 684 89.890500 3866 4505 2 chr1B.!!$R3 639
3 TraesCS1B01G392700 chr1D 455119981 455124588 4607 False 885.166667 4287 84.980833 221 3647 6 chr1D.!!$F3 3426
4 TraesCS1B01G392700 chr1D 37886134 37886878 744 False 410.000000 686 85.648000 3868 4505 2 chr1D.!!$F2 637
5 TraesCS1B01G392700 chr1A 549060869 549064204 3335 False 958.360000 3105 89.983800 245 3646 5 chr1A.!!$F1 3401
6 TraesCS1B01G392700 chr1A 57961547 57962140 593 True 682.000000 682 88.127000 3896 4465 1 chr1A.!!$R1 569
7 TraesCS1B01G392700 chr5A 271053935 271054665 730 False 470.500000 778 88.814500 3868 4505 2 chr5A.!!$F1 637
8 TraesCS1B01G392700 chr4B 612490178 612490879 701 False 388.500000 568 89.713500 3899 4505 2 chr4B.!!$F1 606
9 TraesCS1B01G392700 chr3D 382754750 382755478 728 False 382.000000 566 87.703500 3877 4505 2 chr3D.!!$F1 628
10 TraesCS1B01G392700 chr4A 608583584 608584362 778 False 346.000000 424 89.567500 3867 4465 2 chr4A.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.247301 GCAGTCGGCGATTTTTCGAG 60.247 55.000 14.79 0.0 33.41 4.04 F
604 1843 0.750850 AGTAGACGCACTGTTGGTGT 59.249 50.000 0.00 0.0 46.86 4.16 F
972 2223 0.871057 GCAAAGCCACTCACTCACTC 59.129 55.000 0.00 0.0 0.00 3.51 F
2554 3823 1.007734 GAGCTTCGACACGGACACA 60.008 57.895 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 2833 1.039785 TCTCAGCACCCCGAGATGAG 61.040 60.000 2.31 2.31 38.97 2.90 R
2562 3831 1.165907 TGTGCTCTTGGCTTTGTCCG 61.166 55.000 0.00 0.00 42.39 4.79 R
2890 4159 1.302285 CTTCTGCACCATGGCTCCT 59.698 57.895 13.04 0.00 34.04 3.69 R
3579 4863 0.035458 CTGAGCCCTTCCAAACGTCT 59.965 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.699703 TTGCTATGTAAAAATTGTTTAAGTCCC 57.300 29.630 0.00 0.00 0.00 4.46
32 33 8.308207 TGCTATGTAAAAATTGTTTAAGTCCCC 58.692 33.333 0.00 0.00 0.00 4.81
33 34 7.486870 GCTATGTAAAAATTGTTTAAGTCCCCG 59.513 37.037 0.00 0.00 0.00 5.73
34 35 6.956202 TGTAAAAATTGTTTAAGTCCCCGA 57.044 33.333 0.00 0.00 0.00 5.14
35 36 7.344095 TGTAAAAATTGTTTAAGTCCCCGAA 57.656 32.000 0.00 0.00 0.00 4.30
36 37 7.427214 TGTAAAAATTGTTTAAGTCCCCGAAG 58.573 34.615 0.00 0.00 0.00 3.79
37 38 6.474140 AAAAATTGTTTAAGTCCCCGAAGT 57.526 33.333 0.00 0.00 0.00 3.01
38 39 6.474140 AAAATTGTTTAAGTCCCCGAAGTT 57.526 33.333 0.00 0.00 0.00 2.66
39 40 6.474140 AAATTGTTTAAGTCCCCGAAGTTT 57.526 33.333 0.00 0.00 0.00 2.66
40 41 7.585579 AAATTGTTTAAGTCCCCGAAGTTTA 57.414 32.000 0.00 0.00 0.00 2.01
41 42 7.770366 AATTGTTTAAGTCCCCGAAGTTTAT 57.230 32.000 0.00 0.00 0.00 1.40
42 43 6.563222 TTGTTTAAGTCCCCGAAGTTTATG 57.437 37.500 0.00 0.00 0.00 1.90
43 44 5.867330 TGTTTAAGTCCCCGAAGTTTATGA 58.133 37.500 0.00 0.00 0.00 2.15
44 45 5.702209 TGTTTAAGTCCCCGAAGTTTATGAC 59.298 40.000 0.00 0.00 0.00 3.06
45 46 3.345508 AAGTCCCCGAAGTTTATGACC 57.654 47.619 0.00 0.00 0.00 4.02
46 47 1.206371 AGTCCCCGAAGTTTATGACCG 59.794 52.381 0.00 0.00 0.00 4.79
47 48 1.066645 GTCCCCGAAGTTTATGACCGT 60.067 52.381 0.00 0.00 0.00 4.83
48 49 1.624813 TCCCCGAAGTTTATGACCGTT 59.375 47.619 0.00 0.00 0.00 4.44
49 50 2.038820 TCCCCGAAGTTTATGACCGTTT 59.961 45.455 0.00 0.00 0.00 3.60
50 51 2.160813 CCCCGAAGTTTATGACCGTTTG 59.839 50.000 0.00 0.00 0.00 2.93
51 52 2.413634 CCCGAAGTTTATGACCGTTTGC 60.414 50.000 0.00 0.00 0.00 3.68
52 53 2.492001 CGAAGTTTATGACCGTTTGCG 58.508 47.619 0.00 0.00 37.95 4.85
76 77 7.642071 GGAATTATAGCCGAACGTATGTTAA 57.358 36.000 0.00 0.00 38.78 2.01
77 78 8.075593 GGAATTATAGCCGAACGTATGTTAAA 57.924 34.615 0.00 0.00 38.78 1.52
78 79 8.550376 GGAATTATAGCCGAACGTATGTTAAAA 58.450 33.333 0.00 0.00 38.78 1.52
79 80 9.919348 GAATTATAGCCGAACGTATGTTAAAAA 57.081 29.630 0.00 0.00 38.78 1.94
142 143 2.770130 GGAACCCAATCAGCCCCA 59.230 61.111 0.00 0.00 0.00 4.96
143 144 1.078347 GGAACCCAATCAGCCCCAA 59.922 57.895 0.00 0.00 0.00 4.12
144 145 0.972471 GGAACCCAATCAGCCCCAAG 60.972 60.000 0.00 0.00 0.00 3.61
145 146 1.607801 GAACCCAATCAGCCCCAAGC 61.608 60.000 0.00 0.00 44.25 4.01
146 147 2.761213 CCCAATCAGCCCCAAGCC 60.761 66.667 0.00 0.00 45.47 4.35
147 148 3.142838 CCAATCAGCCCCAAGCCG 61.143 66.667 0.00 0.00 45.47 5.52
148 149 2.361610 CAATCAGCCCCAAGCCGT 60.362 61.111 0.00 0.00 45.47 5.68
149 150 1.978617 CAATCAGCCCCAAGCCGTT 60.979 57.895 0.00 0.00 45.47 4.44
150 151 1.228862 AATCAGCCCCAAGCCGTTT 60.229 52.632 0.00 0.00 45.47 3.60
151 152 0.831711 AATCAGCCCCAAGCCGTTTT 60.832 50.000 0.00 0.00 45.47 2.43
152 153 0.831711 ATCAGCCCCAAGCCGTTTTT 60.832 50.000 0.00 0.00 45.47 1.94
166 167 3.128845 TTTTTCGCCGGATCGCCC 61.129 61.111 5.05 0.00 0.00 6.13
185 186 4.342964 GCAGTCGGCGATTTTTCG 57.657 55.556 14.79 0.00 0.00 3.46
186 187 1.785321 GCAGTCGGCGATTTTTCGA 59.215 52.632 14.79 0.00 34.64 3.71
187 188 0.247301 GCAGTCGGCGATTTTTCGAG 60.247 55.000 14.79 0.00 33.41 4.04
188 189 0.247301 CAGTCGGCGATTTTTCGAGC 60.247 55.000 14.79 0.00 33.41 5.03
189 190 1.060465 GTCGGCGATTTTTCGAGCC 59.940 57.895 14.79 1.15 45.67 4.70
190 191 2.104253 TCGGCGATTTTTCGAGCCC 61.104 57.895 4.99 0.00 46.36 5.19
191 192 2.798689 GGCGATTTTTCGAGCCCC 59.201 61.111 0.00 0.00 43.54 5.80
192 193 1.749258 GGCGATTTTTCGAGCCCCT 60.749 57.895 0.00 0.00 43.54 4.79
193 194 1.429423 GCGATTTTTCGAGCCCCTG 59.571 57.895 0.00 0.00 34.64 4.45
194 195 1.993369 GCGATTTTTCGAGCCCCTGG 61.993 60.000 0.00 0.00 34.64 4.45
195 196 1.376609 CGATTTTTCGAGCCCCTGGG 61.377 60.000 5.50 5.50 35.03 4.45
240 241 7.329962 GCTCTTAGTACTCCTTCAAGTTTCTTC 59.670 40.741 0.00 0.00 0.00 2.87
243 244 6.732896 AGTACTCCTTCAAGTTTCTTCTCA 57.267 37.500 0.00 0.00 0.00 3.27
437 445 7.824779 AGTGTTTATTTTGTTAGTTTTGCCCAA 59.175 29.630 0.00 0.00 0.00 4.12
445 468 4.098807 TGTTAGTTTTGCCCAAACCTCTTC 59.901 41.667 5.25 0.00 45.42 2.87
455 478 6.071984 TGCCCAAACCTCTTCACTAAAATTA 58.928 36.000 0.00 0.00 0.00 1.40
456 479 6.723977 TGCCCAAACCTCTTCACTAAAATTAT 59.276 34.615 0.00 0.00 0.00 1.28
458 481 8.094548 GCCCAAACCTCTTCACTAAAATTATTT 58.905 33.333 0.00 0.00 0.00 1.40
481 504 5.323371 AGCTGACAAAAACTAAGCAACAA 57.677 34.783 0.00 0.00 36.32 2.83
563 1802 5.452078 TTGAGCATTTGAGGTCGAAATTT 57.548 34.783 0.00 0.00 38.81 1.82
565 1804 4.168760 GAGCATTTGAGGTCGAAATTTGG 58.831 43.478 0.00 0.00 0.00 3.28
581 1820 4.965119 ATTTGGAGAACCATTTCGCTAC 57.035 40.909 0.00 0.00 46.34 3.58
584 1823 3.334691 TGGAGAACCATTTCGCTACAAG 58.665 45.455 0.00 0.00 41.77 3.16
586 1825 3.619038 GGAGAACCATTTCGCTACAAGAG 59.381 47.826 0.00 0.00 36.78 2.85
604 1843 0.750850 AGTAGACGCACTGTTGGTGT 59.249 50.000 0.00 0.00 46.86 4.16
664 1915 2.202878 CGGCCACGTACCCTGATG 60.203 66.667 2.24 0.00 34.81 3.07
801 2052 1.540407 CGCTCTTCGCAGTTCTCTAC 58.460 55.000 0.00 0.00 39.08 2.59
813 2064 3.698539 CAGTTCTCTACATCCTCTCTGCA 59.301 47.826 0.00 0.00 0.00 4.41
814 2065 4.341806 CAGTTCTCTACATCCTCTCTGCAT 59.658 45.833 0.00 0.00 0.00 3.96
846 2097 1.153823 GTGTCATGCTCCGTACGCT 60.154 57.895 10.49 0.00 0.00 5.07
867 2118 2.812609 TCGACCTCGACCGACTCG 60.813 66.667 7.89 7.89 44.22 4.18
951 2202 2.632377 GCCGATCATCAGGAAAGAACA 58.368 47.619 0.00 0.00 0.00 3.18
971 2222 3.012560 GCAAAGCCACTCACTCACT 57.987 52.632 0.00 0.00 0.00 3.41
972 2223 0.871057 GCAAAGCCACTCACTCACTC 59.129 55.000 0.00 0.00 0.00 3.51
973 2224 1.811558 GCAAAGCCACTCACTCACTCA 60.812 52.381 0.00 0.00 0.00 3.41
974 2225 1.869767 CAAAGCCACTCACTCACTCAC 59.130 52.381 0.00 0.00 0.00 3.51
1084 2338 1.744741 GCAGCAGAGCAGGAAGGAC 60.745 63.158 0.00 0.00 0.00 3.85
1222 2476 1.103398 ACAACCAGAACCTGCAGCAC 61.103 55.000 8.66 1.36 0.00 4.40
1223 2477 1.893808 AACCAGAACCTGCAGCACG 60.894 57.895 8.66 0.00 0.00 5.34
1224 2478 3.052082 CCAGAACCTGCAGCACGG 61.052 66.667 8.66 8.82 0.00 4.94
1225 2479 3.730761 CAGAACCTGCAGCACGGC 61.731 66.667 8.66 0.00 0.00 5.68
1576 2845 3.083997 GTGGCCTCATCTCGGGGT 61.084 66.667 3.32 0.00 0.00 4.95
1648 2917 2.227036 CCACAGGGAGCAGAAGGGT 61.227 63.158 0.00 0.00 35.59 4.34
1762 3031 2.892640 CTCGGCATCACGGGAGAA 59.107 61.111 0.00 0.00 36.12 2.87
1853 3122 1.376466 GGCCACAAGGAGCAGAAGA 59.624 57.895 0.00 0.00 36.89 2.87
1864 3133 1.921982 AGCAGAAGAGCTCAGACTCA 58.078 50.000 17.77 0.00 42.18 3.41
2200 3469 3.902162 GACGGCCGAGTACACGCAA 62.902 63.158 35.90 0.00 0.00 4.85
2230 3499 1.070786 GAAGGGCAAGGACGTCACA 59.929 57.895 18.91 0.00 0.00 3.58
2371 3640 2.051614 GACGTGACGCTGTCGACA 60.052 61.111 18.88 18.88 37.97 4.35
2468 3737 4.697756 CGGAGCAAGGGAACGCCA 62.698 66.667 0.00 0.00 35.15 5.69
2470 3739 3.423154 GAGCAAGGGAACGCCACG 61.423 66.667 0.00 0.00 35.15 4.94
2550 3819 4.415332 GCCGAGCTTCGACACGGA 62.415 66.667 14.49 0.00 46.94 4.69
2554 3823 1.007734 GAGCTTCGACACGGACACA 60.008 57.895 0.00 0.00 0.00 3.72
2569 3838 1.821759 CACACAGGCCACGGACAAA 60.822 57.895 5.01 0.00 0.00 2.83
2576 3845 1.896660 GCCACGGACAAAGCCAAGA 60.897 57.895 0.00 0.00 0.00 3.02
2731 4000 2.437359 GCGCAGAAGGCCACTGAT 60.437 61.111 26.66 0.00 40.31 2.90
2758 4027 1.402968 GCGTACATCAAGGACTCGGTA 59.597 52.381 0.00 0.00 0.00 4.02
2760 4029 3.432782 CGTACATCAAGGACTCGGTAAC 58.567 50.000 0.00 0.00 0.00 2.50
2890 4159 2.338620 CAGGTGAAGGACGCGACA 59.661 61.111 15.93 1.60 0.00 4.35
2901 4170 4.457496 CGCGACAGGAGCCATGGT 62.457 66.667 14.67 0.00 0.00 3.55
3088 4366 2.431942 AAGGCGAAGGTACGTGCG 60.432 61.111 11.64 11.64 35.59 5.34
3417 4695 1.476074 ACGTCGCAGCAAAAATGTTG 58.524 45.000 0.00 0.00 0.00 3.33
3468 4746 2.614983 TCAGACACGTTTAAAAGGGTGC 59.385 45.455 13.95 5.93 33.81 5.01
3570 4854 4.816925 GGACTATGTCCCAGATGTTTAAGC 59.183 45.833 5.49 0.00 46.19 3.09
3571 4855 5.396884 GGACTATGTCCCAGATGTTTAAGCT 60.397 44.000 5.49 0.00 46.19 3.74
3572 4856 6.067217 ACTATGTCCCAGATGTTTAAGCTT 57.933 37.500 3.48 3.48 0.00 3.74
3573 4857 5.882557 ACTATGTCCCAGATGTTTAAGCTTG 59.117 40.000 9.86 0.00 0.00 4.01
3574 4858 2.819608 TGTCCCAGATGTTTAAGCTTGC 59.180 45.455 9.86 0.00 0.00 4.01
3575 4859 3.084786 GTCCCAGATGTTTAAGCTTGCT 58.915 45.455 9.86 0.00 0.00 3.91
3576 4860 4.261801 GTCCCAGATGTTTAAGCTTGCTA 58.738 43.478 9.86 0.00 0.00 3.49
3577 4861 4.095036 GTCCCAGATGTTTAAGCTTGCTAC 59.905 45.833 9.86 4.90 0.00 3.58
3578 4862 4.019321 TCCCAGATGTTTAAGCTTGCTACT 60.019 41.667 9.86 0.00 0.00 2.57
3579 4863 5.188948 TCCCAGATGTTTAAGCTTGCTACTA 59.811 40.000 9.86 0.00 0.00 1.82
3580 4864 5.525378 CCCAGATGTTTAAGCTTGCTACTAG 59.475 44.000 9.86 0.00 0.00 2.57
3592 4878 3.587797 TGCTACTAGACGTTTGGAAGG 57.412 47.619 0.00 0.00 0.00 3.46
3604 4890 0.905357 TTGGAAGGGCTCAGCTAGTC 59.095 55.000 0.00 0.00 0.00 2.59
3613 4900 2.295909 GGCTCAGCTAGTCGAATCTCAT 59.704 50.000 0.00 0.00 0.00 2.90
3622 4909 8.672815 CAGCTAGTCGAATCTCATATCTTATGA 58.327 37.037 0.00 0.00 0.00 2.15
3643 4930 7.756395 ATGAAATGAAATGGCTATCTAGTGG 57.244 36.000 0.00 0.00 0.00 4.00
3644 4931 6.899089 TGAAATGAAATGGCTATCTAGTGGA 58.101 36.000 0.00 0.00 0.00 4.02
3645 4932 7.520798 TGAAATGAAATGGCTATCTAGTGGAT 58.479 34.615 0.00 0.00 38.38 3.41
3646 4933 7.446319 TGAAATGAAATGGCTATCTAGTGGATG 59.554 37.037 0.00 0.00 35.98 3.51
3647 4934 5.894298 TGAAATGGCTATCTAGTGGATGT 57.106 39.130 0.00 0.00 35.98 3.06
3648 4935 5.614308 TGAAATGGCTATCTAGTGGATGTG 58.386 41.667 0.00 0.00 35.98 3.21
3649 4936 5.366477 TGAAATGGCTATCTAGTGGATGTGA 59.634 40.000 0.00 0.00 35.98 3.58
3650 4937 5.894298 AATGGCTATCTAGTGGATGTGAA 57.106 39.130 0.00 0.00 35.98 3.18
3651 4938 4.944619 TGGCTATCTAGTGGATGTGAAG 57.055 45.455 0.00 0.00 35.98 3.02
3652 4939 4.290093 TGGCTATCTAGTGGATGTGAAGT 58.710 43.478 0.00 0.00 35.98 3.01
3653 4940 4.716784 TGGCTATCTAGTGGATGTGAAGTT 59.283 41.667 0.00 0.00 35.98 2.66
3654 4941 5.189736 TGGCTATCTAGTGGATGTGAAGTTT 59.810 40.000 0.00 0.00 35.98 2.66
3655 4942 6.116126 GGCTATCTAGTGGATGTGAAGTTTT 58.884 40.000 0.00 0.00 35.98 2.43
3656 4943 6.599638 GGCTATCTAGTGGATGTGAAGTTTTT 59.400 38.462 0.00 0.00 35.98 1.94
3657 4944 7.414540 GGCTATCTAGTGGATGTGAAGTTTTTG 60.415 40.741 0.00 0.00 35.98 2.44
3658 4945 5.689383 TCTAGTGGATGTGAAGTTTTTGC 57.311 39.130 0.00 0.00 0.00 3.68
3659 4946 5.129634 TCTAGTGGATGTGAAGTTTTTGCA 58.870 37.500 0.00 0.00 0.00 4.08
3660 4947 4.045636 AGTGGATGTGAAGTTTTTGCAC 57.954 40.909 0.00 0.00 0.00 4.57
3661 4948 3.123050 GTGGATGTGAAGTTTTTGCACC 58.877 45.455 0.00 0.00 0.00 5.01
3662 4949 2.102252 TGGATGTGAAGTTTTTGCACCC 59.898 45.455 0.00 0.00 0.00 4.61
3663 4950 2.393764 GATGTGAAGTTTTTGCACCCG 58.606 47.619 0.00 0.00 0.00 5.28
3664 4951 1.464734 TGTGAAGTTTTTGCACCCGA 58.535 45.000 0.00 0.00 0.00 5.14
3665 4952 1.403679 TGTGAAGTTTTTGCACCCGAG 59.596 47.619 0.00 0.00 0.00 4.63
3666 4953 0.383949 TGAAGTTTTTGCACCCGAGC 59.616 50.000 0.00 0.00 0.00 5.03
3667 4954 0.668535 GAAGTTTTTGCACCCGAGCT 59.331 50.000 0.00 0.00 34.99 4.09
3668 4955 0.668535 AAGTTTTTGCACCCGAGCTC 59.331 50.000 2.73 2.73 34.99 4.09
3669 4956 0.465460 AGTTTTTGCACCCGAGCTCA 60.465 50.000 15.40 0.00 34.99 4.26
3670 4957 0.598065 GTTTTTGCACCCGAGCTCAT 59.402 50.000 15.40 0.00 34.99 2.90
3671 4958 0.881118 TTTTTGCACCCGAGCTCATC 59.119 50.000 15.40 0.00 34.99 2.92
3672 4959 0.960364 TTTTGCACCCGAGCTCATCC 60.960 55.000 15.40 0.00 34.99 3.51
3673 4960 2.123248 TTTGCACCCGAGCTCATCCA 62.123 55.000 15.40 0.00 34.99 3.41
3674 4961 1.913951 TTGCACCCGAGCTCATCCAT 61.914 55.000 15.40 0.00 34.99 3.41
3675 4962 1.153086 GCACCCGAGCTCATCCATT 60.153 57.895 15.40 0.00 0.00 3.16
3676 4963 1.442526 GCACCCGAGCTCATCCATTG 61.443 60.000 15.40 2.67 0.00 2.82
3677 4964 0.107508 CACCCGAGCTCATCCATTGT 60.108 55.000 15.40 0.00 0.00 2.71
3678 4965 1.138859 CACCCGAGCTCATCCATTGTA 59.861 52.381 15.40 0.00 0.00 2.41
3679 4966 1.837439 ACCCGAGCTCATCCATTGTAA 59.163 47.619 15.40 0.00 0.00 2.41
3680 4967 2.238646 ACCCGAGCTCATCCATTGTAAA 59.761 45.455 15.40 0.00 0.00 2.01
3681 4968 3.278574 CCCGAGCTCATCCATTGTAAAA 58.721 45.455 15.40 0.00 0.00 1.52
3682 4969 3.885297 CCCGAGCTCATCCATTGTAAAAT 59.115 43.478 15.40 0.00 0.00 1.82
3683 4970 4.023707 CCCGAGCTCATCCATTGTAAAATC 60.024 45.833 15.40 0.00 0.00 2.17
3684 4971 4.319046 CCGAGCTCATCCATTGTAAAATCG 60.319 45.833 15.40 0.00 0.00 3.34
3685 4972 4.507756 CGAGCTCATCCATTGTAAAATCGA 59.492 41.667 15.40 0.00 0.00 3.59
3686 4973 5.006649 CGAGCTCATCCATTGTAAAATCGAA 59.993 40.000 15.40 0.00 0.00 3.71
3687 4974 6.293081 CGAGCTCATCCATTGTAAAATCGAAT 60.293 38.462 15.40 0.00 0.00 3.34
3688 4975 7.338800 AGCTCATCCATTGTAAAATCGAATT 57.661 32.000 0.00 0.00 0.00 2.17
3689 4976 8.450578 AGCTCATCCATTGTAAAATCGAATTA 57.549 30.769 0.00 0.00 0.00 1.40
3690 4977 8.902806 AGCTCATCCATTGTAAAATCGAATTAA 58.097 29.630 0.00 0.00 0.00 1.40
3691 4978 9.515020 GCTCATCCATTGTAAAATCGAATTAAA 57.485 29.630 0.00 0.00 0.00 1.52
3717 5004 8.574251 AAAAACTGAAATTTTTAGGCCAACTT 57.426 26.923 5.01 0.00 39.43 2.66
3718 5005 8.574251 AAAACTGAAATTTTTAGGCCAACTTT 57.426 26.923 5.01 0.00 0.00 2.66
3719 5006 7.552458 AACTGAAATTTTTAGGCCAACTTTG 57.448 32.000 5.01 0.00 0.00 2.77
3720 5007 6.883744 ACTGAAATTTTTAGGCCAACTTTGA 58.116 32.000 5.01 0.00 0.00 2.69
3721 5008 6.761242 ACTGAAATTTTTAGGCCAACTTTGAC 59.239 34.615 5.01 0.00 0.00 3.18
3722 5009 6.644347 TGAAATTTTTAGGCCAACTTTGACA 58.356 32.000 5.01 0.00 0.00 3.58
3723 5010 7.106239 TGAAATTTTTAGGCCAACTTTGACAA 58.894 30.769 5.01 0.00 0.00 3.18
3724 5011 7.607991 TGAAATTTTTAGGCCAACTTTGACAAA 59.392 29.630 5.01 0.00 0.00 2.83
3725 5012 8.518430 AAATTTTTAGGCCAACTTTGACAAAT 57.482 26.923 5.01 0.00 0.00 2.32
3726 5013 9.620259 AAATTTTTAGGCCAACTTTGACAAATA 57.380 25.926 5.01 0.00 0.00 1.40
3727 5014 9.791801 AATTTTTAGGCCAACTTTGACAAATAT 57.208 25.926 5.01 0.00 0.00 1.28
3728 5015 8.600449 TTTTTAGGCCAACTTTGACAAATATG 57.400 30.769 5.01 3.89 0.00 1.78
3729 5016 7.531857 TTTAGGCCAACTTTGACAAATATGA 57.468 32.000 5.01 0.00 0.00 2.15
3730 5017 5.649782 AGGCCAACTTTGACAAATATGAG 57.350 39.130 5.01 0.00 0.00 2.90
3731 5018 4.082026 AGGCCAACTTTGACAAATATGAGC 60.082 41.667 5.01 8.78 0.00 4.26
3732 5019 4.082026 GGCCAACTTTGACAAATATGAGCT 60.082 41.667 0.00 0.00 0.00 4.09
3733 5020 5.473039 GCCAACTTTGACAAATATGAGCTT 58.527 37.500 0.05 0.00 0.00 3.74
3734 5021 5.346822 GCCAACTTTGACAAATATGAGCTTG 59.653 40.000 0.05 0.00 0.00 4.01
3735 5022 5.346822 CCAACTTTGACAAATATGAGCTTGC 59.653 40.000 0.05 0.00 0.00 4.01
3736 5023 5.710513 ACTTTGACAAATATGAGCTTGCA 57.289 34.783 0.05 0.00 0.00 4.08
3737 5024 6.088016 ACTTTGACAAATATGAGCTTGCAA 57.912 33.333 0.05 0.00 0.00 4.08
3738 5025 6.514947 ACTTTGACAAATATGAGCTTGCAAA 58.485 32.000 0.00 0.00 32.66 3.68
3755 5042 5.660629 TGCAAAGTTTCATCAATGCAAAG 57.339 34.783 0.00 0.00 40.47 2.77
3756 5043 5.117584 TGCAAAGTTTCATCAATGCAAAGT 58.882 33.333 0.00 0.00 40.47 2.66
3757 5044 5.585445 TGCAAAGTTTCATCAATGCAAAGTT 59.415 32.000 0.00 0.00 40.47 2.66
3758 5045 6.093771 TGCAAAGTTTCATCAATGCAAAGTTT 59.906 30.769 0.00 11.09 40.47 2.66
3759 5046 6.968335 GCAAAGTTTCATCAATGCAAAGTTTT 59.032 30.769 0.00 0.00 33.45 2.43
3760 5047 8.121708 GCAAAGTTTCATCAATGCAAAGTTTTA 58.878 29.630 0.00 0.00 33.45 1.52
3763 5050 9.545105 AAGTTTCATCAATGCAAAGTTTTATCA 57.455 25.926 0.00 0.00 0.00 2.15
3764 5051 9.715121 AGTTTCATCAATGCAAAGTTTTATCAT 57.285 25.926 0.00 0.00 0.00 2.45
3765 5052 9.749490 GTTTCATCAATGCAAAGTTTTATCATG 57.251 29.630 0.00 0.00 0.00 3.07
3766 5053 9.708092 TTTCATCAATGCAAAGTTTTATCATGA 57.292 25.926 0.00 0.00 0.00 3.07
3767 5054 9.708092 TTCATCAATGCAAAGTTTTATCATGAA 57.292 25.926 0.00 9.88 0.00 2.57
3768 5055 9.708092 TCATCAATGCAAAGTTTTATCATGAAA 57.292 25.926 0.00 0.00 0.00 2.69
3771 5058 9.708092 TCAATGCAAAGTTTTATCATGAAATCA 57.292 25.926 0.00 0.00 0.00 2.57
3772 5059 9.749490 CAATGCAAAGTTTTATCATGAAATCAC 57.251 29.630 0.00 0.00 0.00 3.06
3773 5060 9.491675 AATGCAAAGTTTTATCATGAAATCACA 57.508 25.926 0.00 0.00 0.00 3.58
3774 5061 9.661563 ATGCAAAGTTTTATCATGAAATCACAT 57.338 25.926 0.00 0.00 0.00 3.21
3795 5082 9.123902 TCACATATAAATATGAGCTTGCAAAGT 57.876 29.630 15.23 0.00 43.29 2.66
3796 5083 9.740239 CACATATAAATATGAGCTTGCAAAGTT 57.260 29.630 15.23 0.00 43.29 2.66
3812 5099 6.051646 GCAAAGTTTCATCATTGCAAAAGT 57.948 33.333 1.71 0.00 45.61 2.66
3813 5100 6.488817 GCAAAGTTTCATCATTGCAAAAGTT 58.511 32.000 1.71 0.00 45.61 2.66
3814 5101 6.968335 GCAAAGTTTCATCATTGCAAAAGTTT 59.032 30.769 1.71 4.79 45.61 2.66
3815 5102 7.485595 GCAAAGTTTCATCATTGCAAAAGTTTT 59.514 29.630 1.71 0.00 45.61 2.43
3816 5103 9.985318 CAAAGTTTCATCATTGCAAAAGTTTTA 57.015 25.926 1.71 0.00 33.96 1.52
3819 5106 9.545105 AGTTTCATCATTGCAAAAGTTTTATCA 57.455 25.926 1.71 0.00 0.00 2.15
3822 5109 9.708092 TTCATCATTGCAAAAGTTTTATCATGA 57.292 25.926 1.71 13.69 0.00 3.07
3823 5110 9.708092 TCATCATTGCAAAAGTTTTATCATGAA 57.292 25.926 1.71 3.24 0.00 2.57
3829 5116 8.883954 TGCAAAAGTTTTATCATGAAATCACA 57.116 26.923 0.00 0.00 0.00 3.58
3830 5117 9.491675 TGCAAAAGTTTTATCATGAAATCACAT 57.508 25.926 0.00 0.00 0.00 3.21
3843 5130 9.599866 TCATGAAATCACATATTTAGAAGTCGT 57.400 29.630 0.00 0.00 0.00 4.34
3844 5131 9.642312 CATGAAATCACATATTTAGAAGTCGTG 57.358 33.333 0.00 0.00 0.00 4.35
3845 5132 8.996024 TGAAATCACATATTTAGAAGTCGTGA 57.004 30.769 0.00 0.00 36.45 4.35
3846 5133 9.430623 TGAAATCACATATTTAGAAGTCGTGAA 57.569 29.630 0.00 0.00 35.72 3.18
3847 5134 9.907576 GAAATCACATATTTAGAAGTCGTGAAG 57.092 33.333 0.00 0.00 35.72 3.02
3848 5135 9.436957 AAATCACATATTTAGAAGTCGTGAAGT 57.563 29.630 0.00 0.00 35.72 3.01
3851 5138 9.917129 TCACATATTTAGAAGTCGTGAAGTAAA 57.083 29.630 0.00 0.00 0.00 2.01
3855 5142 7.886405 ATTTAGAAGTCGTGAAGTAAAGACC 57.114 36.000 0.00 0.00 34.41 3.85
3856 5143 3.898529 AGAAGTCGTGAAGTAAAGACCG 58.101 45.455 0.00 0.00 34.41 4.79
3857 5144 3.567164 AGAAGTCGTGAAGTAAAGACCGA 59.433 43.478 0.00 0.00 34.41 4.69
3858 5145 3.279853 AGTCGTGAAGTAAAGACCGAC 57.720 47.619 0.00 0.00 43.52 4.79
3859 5146 2.620115 AGTCGTGAAGTAAAGACCGACA 59.380 45.455 11.82 0.00 45.07 4.35
3860 5147 3.255149 AGTCGTGAAGTAAAGACCGACAT 59.745 43.478 11.82 0.00 45.07 3.06
3861 5148 3.985925 GTCGTGAAGTAAAGACCGACATT 59.014 43.478 0.00 0.00 42.92 2.71
3862 5149 4.089636 GTCGTGAAGTAAAGACCGACATTC 59.910 45.833 0.00 0.00 42.92 2.67
3863 5150 4.022589 TCGTGAAGTAAAGACCGACATTCT 60.023 41.667 0.00 0.00 0.00 2.40
3864 5151 4.090066 CGTGAAGTAAAGACCGACATTCTG 59.910 45.833 0.00 0.00 0.00 3.02
3865 5152 5.227908 GTGAAGTAAAGACCGACATTCTGA 58.772 41.667 0.00 0.00 0.00 3.27
3866 5153 5.869888 GTGAAGTAAAGACCGACATTCTGAT 59.130 40.000 0.00 0.00 0.00 2.90
3873 5160 7.687941 AAAGACCGACATTCTGATACAAAAT 57.312 32.000 0.00 0.00 0.00 1.82
3985 5273 4.689612 ACTACCAAGTCTGAAAAGAGCA 57.310 40.909 0.00 0.00 0.00 4.26
4005 5293 3.364565 GCACGATTCGGCTCTTTTAAACA 60.365 43.478 11.29 0.00 0.00 2.83
4023 5311 2.480845 ACACGTTTCTGACTAGTTGGC 58.519 47.619 0.00 0.00 0.00 4.52
4072 5406 4.116961 CTCACAAACACCTTGTCTTCGTA 58.883 43.478 0.00 0.00 45.50 3.43
4144 5619 3.699894 CAGCTCGGTGACTGGCCT 61.700 66.667 3.32 0.00 0.00 5.19
4178 5653 1.490574 CGACCCTCCTCATCCTTCTT 58.509 55.000 0.00 0.00 0.00 2.52
4184 5659 2.486716 CTCCTCATCCTTCTTCCCCTT 58.513 52.381 0.00 0.00 0.00 3.95
4333 5861 3.285371 GCAAGGAGCAGCAGCAAT 58.715 55.556 3.17 0.00 45.49 3.56
4499 6246 1.202698 AGCTCCTGCCATTAATCCGTC 60.203 52.381 0.00 0.00 40.80 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.699703 GGGACTTAAACAATTTTTACATAGCAA 57.300 29.630 0.00 0.00 0.00 3.91
6 7 8.308207 GGGGACTTAAACAATTTTTACATAGCA 58.692 33.333 0.00 0.00 0.00 3.49
7 8 7.486870 CGGGGACTTAAACAATTTTTACATAGC 59.513 37.037 0.00 0.00 0.00 2.97
8 9 8.732531 TCGGGGACTTAAACAATTTTTACATAG 58.267 33.333 0.00 0.00 0.00 2.23
9 10 8.632906 TCGGGGACTTAAACAATTTTTACATA 57.367 30.769 0.00 0.00 0.00 2.29
10 11 7.527568 TCGGGGACTTAAACAATTTTTACAT 57.472 32.000 0.00 0.00 0.00 2.29
11 12 6.956202 TCGGGGACTTAAACAATTTTTACA 57.044 33.333 0.00 0.00 0.00 2.41
12 13 7.428020 ACTTCGGGGACTTAAACAATTTTTAC 58.572 34.615 0.00 0.00 0.00 2.01
13 14 7.585579 ACTTCGGGGACTTAAACAATTTTTA 57.414 32.000 0.00 0.00 0.00 1.52
14 15 6.474140 ACTTCGGGGACTTAAACAATTTTT 57.526 33.333 0.00 0.00 0.00 1.94
15 16 6.474140 AACTTCGGGGACTTAAACAATTTT 57.526 33.333 0.00 0.00 0.00 1.82
16 17 6.474140 AAACTTCGGGGACTTAAACAATTT 57.526 33.333 0.00 0.00 0.00 1.82
17 18 7.449086 TCATAAACTTCGGGGACTTAAACAATT 59.551 33.333 0.00 0.00 0.00 2.32
18 19 6.943718 TCATAAACTTCGGGGACTTAAACAAT 59.056 34.615 0.00 0.00 0.00 2.71
19 20 6.205270 GTCATAAACTTCGGGGACTTAAACAA 59.795 38.462 0.00 0.00 0.00 2.83
20 21 5.702209 GTCATAAACTTCGGGGACTTAAACA 59.298 40.000 0.00 0.00 0.00 2.83
21 22 5.122869 GGTCATAAACTTCGGGGACTTAAAC 59.877 44.000 0.00 0.00 0.00 2.01
22 23 5.247862 GGTCATAAACTTCGGGGACTTAAA 58.752 41.667 0.00 0.00 0.00 1.52
23 24 4.621274 CGGTCATAAACTTCGGGGACTTAA 60.621 45.833 0.00 0.00 0.00 1.85
24 25 3.119029 CGGTCATAAACTTCGGGGACTTA 60.119 47.826 0.00 0.00 0.00 2.24
25 26 2.354403 CGGTCATAAACTTCGGGGACTT 60.354 50.000 0.00 0.00 0.00 3.01
26 27 1.206371 CGGTCATAAACTTCGGGGACT 59.794 52.381 0.00 0.00 0.00 3.85
27 28 1.066645 ACGGTCATAAACTTCGGGGAC 60.067 52.381 0.00 0.00 0.00 4.46
28 29 1.269012 ACGGTCATAAACTTCGGGGA 58.731 50.000 0.00 0.00 0.00 4.81
29 30 2.103537 AACGGTCATAAACTTCGGGG 57.896 50.000 0.00 0.00 0.00 5.73
30 31 2.413634 GCAAACGGTCATAAACTTCGGG 60.414 50.000 0.00 0.00 0.00 5.14
31 32 2.723618 CGCAAACGGTCATAAACTTCGG 60.724 50.000 0.00 0.00 34.97 4.30
32 33 2.492001 CGCAAACGGTCATAAACTTCG 58.508 47.619 0.00 0.00 34.97 3.79
45 46 1.862201 TCGGCTATAATTCCGCAAACG 59.138 47.619 0.00 0.00 44.91 3.60
46 47 3.614588 GTTCGGCTATAATTCCGCAAAC 58.385 45.455 0.00 0.00 44.91 2.93
47 48 2.285756 CGTTCGGCTATAATTCCGCAAA 59.714 45.455 0.00 0.00 44.91 3.68
48 49 1.862201 CGTTCGGCTATAATTCCGCAA 59.138 47.619 0.00 0.00 44.91 4.85
49 50 1.202440 ACGTTCGGCTATAATTCCGCA 60.202 47.619 0.00 0.00 44.91 5.69
50 51 1.494824 ACGTTCGGCTATAATTCCGC 58.505 50.000 0.00 0.00 44.91 5.54
51 52 4.232221 ACATACGTTCGGCTATAATTCCG 58.768 43.478 0.00 0.00 46.52 4.30
52 53 7.642071 TTAACATACGTTCGGCTATAATTCC 57.358 36.000 0.00 0.00 36.52 3.01
53 54 9.919348 TTTTTAACATACGTTCGGCTATAATTC 57.081 29.630 0.00 0.00 36.52 2.17
90 91 3.611025 TGGTCACCCCAGAAGATTTTT 57.389 42.857 0.00 0.00 38.72 1.94
116 117 3.607084 ATTGGGTTCCCAGCTGCCC 62.607 63.158 17.70 17.70 41.42 5.36
117 118 2.037847 ATTGGGTTCCCAGCTGCC 59.962 61.111 8.66 3.56 37.42 4.85
118 119 1.304381 TGATTGGGTTCCCAGCTGC 60.304 57.895 8.66 0.00 37.42 5.25
119 120 1.318158 GCTGATTGGGTTCCCAGCTG 61.318 60.000 6.78 6.78 46.04 4.24
120 121 1.000396 GCTGATTGGGTTCCCAGCT 60.000 57.895 10.62 2.98 46.04 4.24
121 122 3.608432 GCTGATTGGGTTCCCAGC 58.392 61.111 10.62 7.30 44.00 4.85
122 123 1.380380 GGGCTGATTGGGTTCCCAG 60.380 63.158 10.62 0.92 37.42 4.45
123 124 2.770130 GGGCTGATTGGGTTCCCA 59.230 61.111 6.46 6.46 36.96 4.37
124 125 2.042944 GGGGCTGATTGGGTTCCC 60.043 66.667 0.12 0.12 36.25 3.97
125 126 0.972471 CTTGGGGCTGATTGGGTTCC 60.972 60.000 0.00 0.00 0.00 3.62
126 127 1.607801 GCTTGGGGCTGATTGGGTTC 61.608 60.000 0.00 0.00 38.06 3.62
127 128 1.610379 GCTTGGGGCTGATTGGGTT 60.610 57.895 0.00 0.00 38.06 4.11
128 129 2.037847 GCTTGGGGCTGATTGGGT 59.962 61.111 0.00 0.00 38.06 4.51
129 130 2.761213 GGCTTGGGGCTGATTGGG 60.761 66.667 0.00 0.00 41.46 4.12
168 169 0.247301 CTCGAAAAATCGCCGACTGC 60.247 55.000 0.00 0.00 0.00 4.40
169 170 0.247301 GCTCGAAAAATCGCCGACTG 60.247 55.000 0.00 0.00 0.00 3.51
170 171 1.359459 GGCTCGAAAAATCGCCGACT 61.359 55.000 0.00 0.00 32.22 4.18
171 172 1.060465 GGCTCGAAAAATCGCCGAC 59.940 57.895 0.00 0.00 32.22 4.79
172 173 2.104253 GGGCTCGAAAAATCGCCGA 61.104 57.895 5.17 0.00 43.38 5.54
173 174 2.403586 GGGCTCGAAAAATCGCCG 59.596 61.111 5.17 0.00 43.38 6.46
174 175 1.749258 AGGGGCTCGAAAAATCGCC 60.749 57.895 2.61 2.61 41.75 5.54
175 176 1.429423 CAGGGGCTCGAAAAATCGC 59.571 57.895 0.00 0.00 0.00 4.58
176 177 1.376609 CCCAGGGGCTCGAAAAATCG 61.377 60.000 0.00 0.00 0.00 3.34
177 178 1.037579 CCCCAGGGGCTCGAAAAATC 61.038 60.000 13.35 0.00 35.35 2.17
178 179 1.000359 CCCCAGGGGCTCGAAAAAT 60.000 57.895 13.35 0.00 35.35 1.82
179 180 2.438795 CCCCAGGGGCTCGAAAAA 59.561 61.111 13.35 0.00 35.35 1.94
211 212 6.215495 ACTTGAAGGAGTACTAAGAGCATC 57.785 41.667 8.92 0.00 0.00 3.91
212 213 6.613153 AACTTGAAGGAGTACTAAGAGCAT 57.387 37.500 8.92 0.00 0.00 3.79
213 214 6.267928 AGAAACTTGAAGGAGTACTAAGAGCA 59.732 38.462 8.92 0.00 0.00 4.26
214 215 6.693466 AGAAACTTGAAGGAGTACTAAGAGC 58.307 40.000 8.92 0.00 0.00 4.09
215 216 8.581578 AGAAGAAACTTGAAGGAGTACTAAGAG 58.418 37.037 8.92 0.00 0.00 2.85
216 217 8.480133 AGAAGAAACTTGAAGGAGTACTAAGA 57.520 34.615 8.92 0.00 0.00 2.10
217 218 8.361139 TGAGAAGAAACTTGAAGGAGTACTAAG 58.639 37.037 0.00 0.00 0.00 2.18
218 219 8.142551 GTGAGAAGAAACTTGAAGGAGTACTAA 58.857 37.037 0.00 0.00 0.00 2.24
219 220 7.521748 CGTGAGAAGAAACTTGAAGGAGTACTA 60.522 40.741 0.00 0.00 0.00 1.82
240 241 2.552315 AGGGTGCATTTAAACACGTGAG 59.448 45.455 25.01 0.00 37.68 3.51
243 244 2.691011 ACAAGGGTGCATTTAAACACGT 59.309 40.909 0.00 0.00 37.68 4.49
348 349 9.685276 TCAGAAAATCTTTTTGGAGCATCTATA 57.315 29.630 0.00 0.00 33.73 1.31
455 478 7.488322 TGTTGCTTAGTTTTTGTCAGCTAAAT 58.512 30.769 0.00 0.00 0.00 1.40
456 479 6.857956 TGTTGCTTAGTTTTTGTCAGCTAAA 58.142 32.000 0.00 0.00 0.00 1.85
458 481 6.443934 TTGTTGCTTAGTTTTTGTCAGCTA 57.556 33.333 0.00 0.00 0.00 3.32
459 482 4.981806 TGTTGCTTAGTTTTTGTCAGCT 57.018 36.364 0.00 0.00 0.00 4.24
521 1190 7.758980 TGCTCAATACGTATTAAACTCGGTAAA 59.241 33.333 19.95 0.00 0.00 2.01
522 1191 7.257003 TGCTCAATACGTATTAAACTCGGTAA 58.743 34.615 19.95 0.00 0.00 2.85
526 1195 8.325282 TCAAATGCTCAATACGTATTAAACTCG 58.675 33.333 19.95 7.51 0.00 4.18
527 1196 9.638300 CTCAAATGCTCAATACGTATTAAACTC 57.362 33.333 19.95 8.80 0.00 3.01
533 1202 5.234329 CGACCTCAAATGCTCAATACGTATT 59.766 40.000 15.07 15.07 0.00 1.89
535 1204 4.109766 CGACCTCAAATGCTCAATACGTA 58.890 43.478 0.00 0.00 0.00 3.57
563 1802 9.657123 CTACTCTTGTAGCGAAATGGTTCTCCA 62.657 44.444 0.00 0.00 42.39 3.86
565 1804 4.246458 ACTCTTGTAGCGAAATGGTTCTC 58.754 43.478 0.00 0.00 0.00 2.87
581 1820 2.061773 CCAACAGTGCGTCTACTCTTG 58.938 52.381 0.00 0.00 0.00 3.02
584 1823 1.419374 CACCAACAGTGCGTCTACTC 58.581 55.000 0.00 0.00 40.28 2.59
771 2022 4.717313 AAGAGCGGCGGGGTTTCC 62.717 66.667 9.78 0.00 0.00 3.13
801 2052 1.213733 CGTGCGATGCAGAGAGGATG 61.214 60.000 0.00 0.00 40.08 3.51
828 2079 1.153823 AGCGTACGGAGCATGACAC 60.154 57.895 18.39 0.00 37.01 3.67
889 2140 1.401905 CTTAAAATGGTCCCGCTGAGC 59.598 52.381 0.00 0.00 41.96 4.26
898 2149 1.664151 CGAGGTCCGCTTAAAATGGTC 59.336 52.381 0.00 0.00 0.00 4.02
930 2181 1.594862 GTTCTTTCCTGATGATCGGCG 59.405 52.381 0.00 0.00 0.00 6.46
971 2222 1.744320 CTGGACGTGGTGACTGGTGA 61.744 60.000 0.00 0.00 0.00 4.02
972 2223 1.300931 CTGGACGTGGTGACTGGTG 60.301 63.158 0.00 0.00 0.00 4.17
973 2224 3.138625 CTGGACGTGGTGACTGGT 58.861 61.111 0.00 0.00 0.00 4.00
974 2225 2.357517 GCTGGACGTGGTGACTGG 60.358 66.667 0.00 0.00 0.00 4.00
1153 2407 3.184683 GAGTTCTGCTGCGCCTCG 61.185 66.667 4.18 0.00 0.00 4.63
1270 2530 4.451150 GAGATGACCGTGGCGCCA 62.451 66.667 29.03 29.03 0.00 5.69
1555 2824 2.202797 CGAGATGAGGCCACCGTG 60.203 66.667 5.01 0.00 0.00 4.94
1564 2833 1.039785 TCTCAGCACCCCGAGATGAG 61.040 60.000 2.31 2.31 38.97 2.90
1635 2904 2.269241 CCGAACCCTTCTGCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
1672 2941 1.920325 CTCCTTGCCCCTGTCCTCA 60.920 63.158 0.00 0.00 0.00 3.86
1762 3031 2.133641 GCCCTTGGCCACAGTTTGT 61.134 57.895 3.88 0.00 44.06 2.83
1829 3098 2.125673 CTCCTTGTGGCCCGTACG 60.126 66.667 8.69 8.69 0.00 3.67
1830 3099 2.436115 GCTCCTTGTGGCCCGTAC 60.436 66.667 0.00 0.00 0.00 3.67
1853 3122 4.127040 CGCGGCTGAGTCTGAGCT 62.127 66.667 11.28 0.00 36.63 4.09
2088 3357 3.986006 TGCTCACCGTGACGTCCC 61.986 66.667 14.12 0.00 0.00 4.46
2550 3819 2.544590 TTTGTCCGTGGCCTGTGTGT 62.545 55.000 3.32 0.00 0.00 3.72
2554 3823 2.594592 GCTTTGTCCGTGGCCTGT 60.595 61.111 3.32 0.00 0.00 4.00
2562 3831 1.165907 TGTGCTCTTGGCTTTGTCCG 61.166 55.000 0.00 0.00 42.39 4.79
2833 4102 3.307906 TTCCCCGTGTCTCCGGTG 61.308 66.667 0.00 0.00 46.66 4.94
2851 4120 4.864334 GCCATGCTCCCGGTCCTG 62.864 72.222 0.00 0.00 0.00 3.86
2890 4159 1.302285 CTTCTGCACCATGGCTCCT 59.698 57.895 13.04 0.00 34.04 3.69
3091 4369 2.434884 CTTGCGGCAGGACACGAT 60.435 61.111 6.18 0.00 0.00 3.73
3370 4648 2.159043 GGATCTGCTCACTCGGATTTCA 60.159 50.000 0.00 0.00 32.52 2.69
3417 4695 2.880890 ACTGCACAACCAACATTCTCTC 59.119 45.455 0.00 0.00 0.00 3.20
3558 4842 6.020281 CGTCTAGTAGCAAGCTTAAACATCTG 60.020 42.308 0.00 0.00 0.00 2.90
3559 4843 6.037098 CGTCTAGTAGCAAGCTTAAACATCT 58.963 40.000 0.00 0.00 0.00 2.90
3560 4844 5.805994 ACGTCTAGTAGCAAGCTTAAACATC 59.194 40.000 0.00 0.00 0.00 3.06
3561 4845 5.721232 ACGTCTAGTAGCAAGCTTAAACAT 58.279 37.500 0.00 0.00 0.00 2.71
3562 4846 5.130292 ACGTCTAGTAGCAAGCTTAAACA 57.870 39.130 0.00 0.00 0.00 2.83
3563 4847 6.297353 CAAACGTCTAGTAGCAAGCTTAAAC 58.703 40.000 0.00 0.00 0.00 2.01
3565 4849 4.927425 CCAAACGTCTAGTAGCAAGCTTAA 59.073 41.667 0.00 0.00 0.00 1.85
3566 4850 4.219070 TCCAAACGTCTAGTAGCAAGCTTA 59.781 41.667 0.00 0.00 0.00 3.09
3568 4852 2.561419 TCCAAACGTCTAGTAGCAAGCT 59.439 45.455 0.00 0.00 0.00 3.74
3569 4853 2.955614 TCCAAACGTCTAGTAGCAAGC 58.044 47.619 0.00 0.00 0.00 4.01
3570 4854 3.927142 CCTTCCAAACGTCTAGTAGCAAG 59.073 47.826 0.00 0.00 0.00 4.01
3571 4855 3.306502 CCCTTCCAAACGTCTAGTAGCAA 60.307 47.826 0.00 0.00 0.00 3.91
3572 4856 2.232941 CCCTTCCAAACGTCTAGTAGCA 59.767 50.000 0.00 0.00 0.00 3.49
3573 4857 2.889852 CCCTTCCAAACGTCTAGTAGC 58.110 52.381 0.00 0.00 0.00 3.58
3574 4858 2.496470 AGCCCTTCCAAACGTCTAGTAG 59.504 50.000 0.00 0.00 0.00 2.57
3575 4859 2.494870 GAGCCCTTCCAAACGTCTAGTA 59.505 50.000 0.00 0.00 0.00 1.82
3576 4860 1.275573 GAGCCCTTCCAAACGTCTAGT 59.724 52.381 0.00 0.00 0.00 2.57
3577 4861 1.275291 TGAGCCCTTCCAAACGTCTAG 59.725 52.381 0.00 0.00 0.00 2.43
3578 4862 1.275291 CTGAGCCCTTCCAAACGTCTA 59.725 52.381 0.00 0.00 0.00 2.59
3579 4863 0.035458 CTGAGCCCTTCCAAACGTCT 59.965 55.000 0.00 0.00 0.00 4.18
3580 4864 1.578206 GCTGAGCCCTTCCAAACGTC 61.578 60.000 0.00 0.00 0.00 4.34
3592 4878 1.678627 TGAGATTCGACTAGCTGAGCC 59.321 52.381 0.00 0.00 0.00 4.70
3622 4909 7.230108 CACATCCACTAGATAGCCATTTCATTT 59.770 37.037 0.00 0.00 32.37 2.32
3637 4924 5.215160 GTGCAAAAACTTCACATCCACTAG 58.785 41.667 0.00 0.00 0.00 2.57
3643 4930 2.034053 TCGGGTGCAAAAACTTCACATC 59.966 45.455 0.00 0.00 32.69 3.06
3644 4931 2.028130 TCGGGTGCAAAAACTTCACAT 58.972 42.857 0.00 0.00 32.69 3.21
3645 4932 1.403679 CTCGGGTGCAAAAACTTCACA 59.596 47.619 0.00 0.00 32.69 3.58
3646 4933 1.864029 GCTCGGGTGCAAAAACTTCAC 60.864 52.381 0.00 0.00 0.00 3.18
3647 4934 0.383949 GCTCGGGTGCAAAAACTTCA 59.616 50.000 0.00 0.00 0.00 3.02
3648 4935 0.668535 AGCTCGGGTGCAAAAACTTC 59.331 50.000 0.00 0.00 34.99 3.01
3649 4936 0.668535 GAGCTCGGGTGCAAAAACTT 59.331 50.000 0.00 0.00 34.99 2.66
3650 4937 0.465460 TGAGCTCGGGTGCAAAAACT 60.465 50.000 9.64 0.00 34.99 2.66
3651 4938 0.598065 ATGAGCTCGGGTGCAAAAAC 59.402 50.000 9.64 0.00 34.99 2.43
3652 4939 0.881118 GATGAGCTCGGGTGCAAAAA 59.119 50.000 9.64 0.00 34.99 1.94
3653 4940 0.960364 GGATGAGCTCGGGTGCAAAA 60.960 55.000 9.64 0.00 34.99 2.44
3654 4941 1.377202 GGATGAGCTCGGGTGCAAA 60.377 57.895 9.64 0.00 34.99 3.68
3655 4942 1.913951 ATGGATGAGCTCGGGTGCAA 61.914 55.000 9.64 0.00 34.99 4.08
3656 4943 1.913951 AATGGATGAGCTCGGGTGCA 61.914 55.000 9.64 9.56 34.99 4.57
3657 4944 1.153086 AATGGATGAGCTCGGGTGC 60.153 57.895 9.64 3.73 0.00 5.01
3658 4945 0.107508 ACAATGGATGAGCTCGGGTG 60.108 55.000 9.64 3.87 0.00 4.61
3659 4946 1.496060 TACAATGGATGAGCTCGGGT 58.504 50.000 9.64 0.00 0.00 5.28
3660 4947 2.620251 TTACAATGGATGAGCTCGGG 57.380 50.000 9.64 0.00 0.00 5.14
3661 4948 4.319046 CGATTTTACAATGGATGAGCTCGG 60.319 45.833 9.64 0.00 0.00 4.63
3662 4949 4.507756 TCGATTTTACAATGGATGAGCTCG 59.492 41.667 9.64 0.00 0.00 5.03
3663 4950 5.991328 TCGATTTTACAATGGATGAGCTC 57.009 39.130 6.82 6.82 0.00 4.09
3664 4951 6.949352 ATTCGATTTTACAATGGATGAGCT 57.051 33.333 0.00 0.00 28.24 4.09
3665 4952 9.515020 TTTAATTCGATTTTACAATGGATGAGC 57.485 29.630 0.00 0.00 28.24 4.26
3692 4979 8.574251 AAGTTGGCCTAAAAATTTCAGTTTTT 57.426 26.923 3.32 3.30 42.25 1.94
3693 4980 8.458052 CAAAGTTGGCCTAAAAATTTCAGTTTT 58.542 29.630 3.32 0.00 32.94 2.43
3694 4981 7.826744 TCAAAGTTGGCCTAAAAATTTCAGTTT 59.173 29.630 3.32 0.00 0.00 2.66
3695 4982 7.279981 GTCAAAGTTGGCCTAAAAATTTCAGTT 59.720 33.333 3.32 0.00 0.00 3.16
3696 4983 6.761242 GTCAAAGTTGGCCTAAAAATTTCAGT 59.239 34.615 3.32 0.00 0.00 3.41
3697 4984 6.760770 TGTCAAAGTTGGCCTAAAAATTTCAG 59.239 34.615 3.32 0.00 30.03 3.02
3698 4985 6.644347 TGTCAAAGTTGGCCTAAAAATTTCA 58.356 32.000 3.32 0.00 30.03 2.69
3699 4986 7.546778 TTGTCAAAGTTGGCCTAAAAATTTC 57.453 32.000 3.32 0.00 30.03 2.17
3700 4987 7.929941 TTTGTCAAAGTTGGCCTAAAAATTT 57.070 28.000 3.32 0.00 30.03 1.82
3701 4988 9.791801 ATATTTGTCAAAGTTGGCCTAAAAATT 57.208 25.926 3.32 0.00 30.03 1.82
3702 4989 9.218440 CATATTTGTCAAAGTTGGCCTAAAAAT 57.782 29.630 3.32 1.37 30.03 1.82
3703 4990 8.424918 TCATATTTGTCAAAGTTGGCCTAAAAA 58.575 29.630 3.32 0.00 30.03 1.94
3704 4991 7.957002 TCATATTTGTCAAAGTTGGCCTAAAA 58.043 30.769 3.32 0.00 30.03 1.52
3705 4992 7.531857 TCATATTTGTCAAAGTTGGCCTAAA 57.468 32.000 3.32 0.00 30.03 1.85
3706 4993 6.350110 GCTCATATTTGTCAAAGTTGGCCTAA 60.350 38.462 3.32 0.00 30.03 2.69
3707 4994 5.125417 GCTCATATTTGTCAAAGTTGGCCTA 59.875 40.000 3.32 0.00 30.03 3.93
3708 4995 4.082026 GCTCATATTTGTCAAAGTTGGCCT 60.082 41.667 3.32 0.00 30.03 5.19
3709 4996 4.082026 AGCTCATATTTGTCAAAGTTGGCC 60.082 41.667 4.03 0.00 30.03 5.36
3710 4997 5.064441 AGCTCATATTTGTCAAAGTTGGC 57.936 39.130 4.03 8.97 0.00 4.52
3711 4998 5.346822 GCAAGCTCATATTTGTCAAAGTTGG 59.653 40.000 4.03 0.96 0.00 3.77
3712 4999 5.921976 TGCAAGCTCATATTTGTCAAAGTTG 59.078 36.000 4.03 4.37 0.00 3.16
3713 5000 6.088016 TGCAAGCTCATATTTGTCAAAGTT 57.912 33.333 4.03 0.00 0.00 2.66
3714 5001 5.710513 TGCAAGCTCATATTTGTCAAAGT 57.289 34.783 4.03 0.00 0.00 2.66
3715 5002 6.643770 ACTTTGCAAGCTCATATTTGTCAAAG 59.356 34.615 19.58 19.58 43.76 2.77
3716 5003 6.514947 ACTTTGCAAGCTCATATTTGTCAAA 58.485 32.000 0.00 0.00 33.56 2.69
3717 5004 6.088016 ACTTTGCAAGCTCATATTTGTCAA 57.912 33.333 0.00 0.00 0.00 3.18
3718 5005 5.710513 ACTTTGCAAGCTCATATTTGTCA 57.289 34.783 0.00 0.00 0.00 3.58
3719 5006 6.642131 TGAAACTTTGCAAGCTCATATTTGTC 59.358 34.615 0.00 0.00 0.00 3.18
3720 5007 6.514947 TGAAACTTTGCAAGCTCATATTTGT 58.485 32.000 0.00 0.00 0.00 2.83
3721 5008 7.329962 TGATGAAACTTTGCAAGCTCATATTTG 59.670 33.333 0.00 0.00 35.61 2.32
3722 5009 7.380536 TGATGAAACTTTGCAAGCTCATATTT 58.619 30.769 0.00 0.00 35.61 1.40
3723 5010 6.927416 TGATGAAACTTTGCAAGCTCATATT 58.073 32.000 0.00 0.00 35.61 1.28
3724 5011 6.519679 TGATGAAACTTTGCAAGCTCATAT 57.480 33.333 0.00 0.00 35.61 1.78
3725 5012 5.963176 TGATGAAACTTTGCAAGCTCATA 57.037 34.783 0.00 0.00 35.61 2.15
3726 5013 4.859304 TGATGAAACTTTGCAAGCTCAT 57.141 36.364 11.94 11.94 37.19 2.90
3727 5014 4.652421 TTGATGAAACTTTGCAAGCTCA 57.348 36.364 0.00 1.90 0.00 4.26
3728 5015 4.143179 GCATTGATGAAACTTTGCAAGCTC 60.143 41.667 0.00 0.00 0.00 4.09
3729 5016 3.744426 GCATTGATGAAACTTTGCAAGCT 59.256 39.130 0.00 0.00 0.00 3.74
3730 5017 3.495377 TGCATTGATGAAACTTTGCAAGC 59.505 39.130 0.00 0.00 37.17 4.01
3731 5018 5.660629 TTGCATTGATGAAACTTTGCAAG 57.339 34.783 0.00 0.00 43.02 4.01
3732 5019 5.585445 ACTTTGCATTGATGAAACTTTGCAA 59.415 32.000 0.00 0.00 45.31 4.08
3733 5020 5.117584 ACTTTGCATTGATGAAACTTTGCA 58.882 33.333 0.00 0.00 38.24 4.08
3734 5021 5.662211 ACTTTGCATTGATGAAACTTTGC 57.338 34.783 0.00 0.00 0.00 3.68
3737 5024 9.545105 TGATAAAACTTTGCATTGATGAAACTT 57.455 25.926 0.00 0.00 0.00 2.66
3738 5025 9.715121 ATGATAAAACTTTGCATTGATGAAACT 57.285 25.926 0.00 0.00 0.00 2.66
3739 5026 9.749490 CATGATAAAACTTTGCATTGATGAAAC 57.251 29.630 0.00 0.00 0.00 2.78
3740 5027 9.708092 TCATGATAAAACTTTGCATTGATGAAA 57.292 25.926 0.00 0.00 0.00 2.69
3741 5028 9.708092 TTCATGATAAAACTTTGCATTGATGAA 57.292 25.926 0.00 0.00 0.00 2.57
3742 5029 9.708092 TTTCATGATAAAACTTTGCATTGATGA 57.292 25.926 0.00 0.00 0.00 2.92
3745 5032 9.708092 TGATTTCATGATAAAACTTTGCATTGA 57.292 25.926 0.00 0.00 0.00 2.57
3746 5033 9.749490 GTGATTTCATGATAAAACTTTGCATTG 57.251 29.630 0.00 0.00 0.00 2.82
3747 5034 9.491675 TGTGATTTCATGATAAAACTTTGCATT 57.508 25.926 0.00 0.00 0.00 3.56
3748 5035 9.661563 ATGTGATTTCATGATAAAACTTTGCAT 57.338 25.926 0.00 0.00 0.00 3.96
3769 5056 9.123902 ACTTTGCAAGCTCATATTTATATGTGA 57.876 29.630 13.27 0.00 40.69 3.58
3770 5057 9.740239 AACTTTGCAAGCTCATATTTATATGTG 57.260 29.630 0.00 8.07 40.69 3.21
3775 5062 9.525409 GATGAAACTTTGCAAGCTCATATTTAT 57.475 29.630 0.00 0.00 35.61 1.40
3776 5063 8.522003 TGATGAAACTTTGCAAGCTCATATTTA 58.478 29.630 0.00 0.00 35.61 1.40
3777 5064 7.380536 TGATGAAACTTTGCAAGCTCATATTT 58.619 30.769 0.00 0.00 35.61 1.40
3778 5065 6.927416 TGATGAAACTTTGCAAGCTCATATT 58.073 32.000 0.00 0.00 35.61 1.28
3779 5066 6.519679 TGATGAAACTTTGCAAGCTCATAT 57.480 33.333 0.00 0.00 35.61 1.78
3780 5067 5.963176 TGATGAAACTTTGCAAGCTCATA 57.037 34.783 0.00 0.00 35.61 2.15
3781 5068 4.859304 TGATGAAACTTTGCAAGCTCAT 57.141 36.364 11.94 11.94 37.19 2.90
3782 5069 4.859304 ATGATGAAACTTTGCAAGCTCA 57.141 36.364 0.00 1.90 0.00 4.26
3783 5070 4.143179 GCAATGATGAAACTTTGCAAGCTC 60.143 41.667 0.00 0.00 44.56 4.09
3784 5071 3.744426 GCAATGATGAAACTTTGCAAGCT 59.256 39.130 0.00 0.00 44.56 3.74
3785 5072 4.061570 GCAATGATGAAACTTTGCAAGC 57.938 40.909 0.00 0.00 44.56 4.01
3789 5076 6.051646 ACTTTTGCAATGATGAAACTTTGC 57.948 33.333 0.00 0.00 45.03 3.68
3790 5077 8.898983 AAAACTTTTGCAATGATGAAACTTTG 57.101 26.923 0.00 0.00 0.00 2.77
3793 5080 9.545105 TGATAAAACTTTTGCAATGATGAAACT 57.455 25.926 0.00 0.00 0.00 2.66
3796 5083 9.708092 TCATGATAAAACTTTTGCAATGATGAA 57.292 25.926 0.00 0.00 0.00 2.57
3797 5084 9.708092 TTCATGATAAAACTTTTGCAATGATGA 57.292 25.926 0.00 0.00 0.00 2.92
3803 5090 9.322773 TGTGATTTCATGATAAAACTTTTGCAA 57.677 25.926 0.00 0.00 0.00 4.08
3804 5091 8.883954 TGTGATTTCATGATAAAACTTTTGCA 57.116 26.923 0.00 0.00 0.00 4.08
3817 5104 9.599866 ACGACTTCTAAATATGTGATTTCATGA 57.400 29.630 0.00 0.00 0.00 3.07
3818 5105 9.642312 CACGACTTCTAAATATGTGATTTCATG 57.358 33.333 0.00 0.00 0.00 3.07
3819 5106 9.599866 TCACGACTTCTAAATATGTGATTTCAT 57.400 29.630 0.00 0.00 30.61 2.57
3820 5107 8.996024 TCACGACTTCTAAATATGTGATTTCA 57.004 30.769 0.00 0.00 30.61 2.69
3821 5108 9.907576 CTTCACGACTTCTAAATATGTGATTTC 57.092 33.333 0.00 0.00 35.12 2.17
3822 5109 9.436957 ACTTCACGACTTCTAAATATGTGATTT 57.563 29.630 0.00 0.00 35.12 2.17
3825 5112 9.917129 TTTACTTCACGACTTCTAAATATGTGA 57.083 29.630 0.00 0.00 33.47 3.58
3829 5116 9.583765 GGTCTTTACTTCACGACTTCTAAATAT 57.416 33.333 0.00 0.00 0.00 1.28
3830 5117 7.752239 CGGTCTTTACTTCACGACTTCTAAATA 59.248 37.037 0.00 0.00 0.00 1.40
3831 5118 6.585322 CGGTCTTTACTTCACGACTTCTAAAT 59.415 38.462 0.00 0.00 0.00 1.40
3832 5119 5.916883 CGGTCTTTACTTCACGACTTCTAAA 59.083 40.000 0.00 0.00 0.00 1.85
3833 5120 5.239306 TCGGTCTTTACTTCACGACTTCTAA 59.761 40.000 0.00 0.00 0.00 2.10
3834 5121 4.756642 TCGGTCTTTACTTCACGACTTCTA 59.243 41.667 0.00 0.00 0.00 2.10
3835 5122 3.567164 TCGGTCTTTACTTCACGACTTCT 59.433 43.478 0.00 0.00 0.00 2.85
3836 5123 3.667726 GTCGGTCTTTACTTCACGACTTC 59.332 47.826 7.65 0.00 44.95 3.01
3837 5124 3.636381 GTCGGTCTTTACTTCACGACTT 58.364 45.455 7.65 0.00 44.95 3.01
3838 5125 3.279853 GTCGGTCTTTACTTCACGACT 57.720 47.619 7.65 0.00 44.95 4.18
3840 5127 3.928727 ATGTCGGTCTTTACTTCACGA 57.071 42.857 0.00 0.00 0.00 4.35
3841 5128 4.090066 CAGAATGTCGGTCTTTACTTCACG 59.910 45.833 0.00 0.00 0.00 4.35
3842 5129 5.227908 TCAGAATGTCGGTCTTTACTTCAC 58.772 41.667 0.00 0.00 37.40 3.18
3843 5130 5.462530 TCAGAATGTCGGTCTTTACTTCA 57.537 39.130 0.00 0.00 37.40 3.02
3844 5131 7.033791 TGTATCAGAATGTCGGTCTTTACTTC 58.966 38.462 0.00 0.00 37.40 3.01
3845 5132 6.931838 TGTATCAGAATGTCGGTCTTTACTT 58.068 36.000 0.00 0.00 37.40 2.24
3846 5133 6.525578 TGTATCAGAATGTCGGTCTTTACT 57.474 37.500 0.00 0.00 37.40 2.24
3847 5134 7.591006 TTTGTATCAGAATGTCGGTCTTTAC 57.409 36.000 0.00 0.00 37.40 2.01
3848 5135 8.786826 ATTTTGTATCAGAATGTCGGTCTTTA 57.213 30.769 0.00 0.00 37.40 1.85
3849 5136 7.687941 ATTTTGTATCAGAATGTCGGTCTTT 57.312 32.000 0.00 0.00 37.40 2.52
3850 5137 8.041323 AGTATTTTGTATCAGAATGTCGGTCTT 58.959 33.333 0.00 0.00 37.40 3.01
3851 5138 7.556844 AGTATTTTGTATCAGAATGTCGGTCT 58.443 34.615 0.00 0.00 37.40 3.85
3852 5139 7.772332 AGTATTTTGTATCAGAATGTCGGTC 57.228 36.000 0.00 0.00 37.40 4.79
3853 5140 7.709613 GGTAGTATTTTGTATCAGAATGTCGGT 59.290 37.037 0.00 0.00 37.40 4.69
3854 5141 7.709182 TGGTAGTATTTTGTATCAGAATGTCGG 59.291 37.037 0.00 0.00 37.40 4.79
3855 5142 8.540492 GTGGTAGTATTTTGTATCAGAATGTCG 58.460 37.037 0.00 0.00 37.40 4.35
3856 5143 9.378551 TGTGGTAGTATTTTGTATCAGAATGTC 57.621 33.333 0.00 0.00 37.40 3.06
3857 5144 9.733556 TTGTGGTAGTATTTTGTATCAGAATGT 57.266 29.630 0.00 0.00 37.40 2.71
3861 5148 9.952030 TGAATTGTGGTAGTATTTTGTATCAGA 57.048 29.630 0.00 0.00 0.00 3.27
3873 5160 7.178274 AGGCATTTTTCATGAATTGTGGTAGTA 59.822 33.333 9.40 0.00 0.00 1.82
3893 5180 6.300703 TGTAAAGTGGTAGTTTGTAGGCATT 58.699 36.000 0.00 0.00 0.00 3.56
3985 5273 3.120786 CGTGTTTAAAAGAGCCGAATCGT 60.121 43.478 0.82 0.00 0.00 3.73
4005 5293 1.270678 GGGCCAACTAGTCAGAAACGT 60.271 52.381 4.39 0.00 0.00 3.99
4144 5619 4.800592 TCGGCCGGGGGTTGGATA 62.801 66.667 27.83 0.00 0.00 2.59
4178 5653 2.528127 TGCTCCGGACAAAGGGGA 60.528 61.111 0.00 0.00 0.00 4.81
4184 5659 2.915659 AGGTCGTGCTCCGGACAA 60.916 61.111 0.00 0.00 37.11 3.18
4333 5861 2.587322 CTATTCCTTGACGGCCGCCA 62.587 60.000 28.58 20.37 0.00 5.69
4342 5870 1.521457 CGCGCCTGCTATTCCTTGA 60.521 57.895 0.00 0.00 39.65 3.02
4434 6171 2.202987 CGAGCTCAGCCATGGTCC 60.203 66.667 14.67 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.