Multiple sequence alignment - TraesCS1B01G392400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G392400 chr1B 100.000 4996 0 0 1 4996 625572857 625567862 0.000000e+00 9226.0
1 TraesCS1B01G392400 chr1B 91.753 3468 185 39 1357 4796 625508626 625505232 0.000000e+00 4726.0
2 TraesCS1B01G392400 chr1B 100.000 218 0 0 5273 5490 625567585 625567368 2.380000e-108 403.0
3 TraesCS1B01G392400 chr1D 91.592 4472 271 51 548 4978 455085521 455081114 0.000000e+00 6078.0
4 TraesCS1B01G392400 chr1D 84.141 227 24 8 5273 5490 455081023 455080800 5.570000e-50 209.0
5 TraesCS1B01G392400 chr1D 84.685 222 20 7 318 527 455085728 455085509 5.570000e-50 209.0
6 TraesCS1B01G392400 chr1D 89.764 127 5 2 69 187 170105761 170105635 7.360000e-34 156.0
7 TraesCS1B01G392400 chr1A 90.539 4672 332 49 177 4785 548945705 548941081 0.000000e+00 6078.0
8 TraesCS1B01G392400 chr1A 94.792 192 7 1 4791 4982 548934281 548934093 4.160000e-76 296.0
9 TraesCS1B01G392400 chr1A 83.486 218 12 5 5273 5467 548934004 548933788 1.210000e-41 182.0
10 TraesCS1B01G392400 chr1A 100.000 30 0 0 5461 5490 548932098 548932069 7.680000e-04 56.5
11 TraesCS1B01G392400 chr4B 91.946 447 33 3 471 915 236135766 236136211 1.680000e-174 623.0
12 TraesCS1B01G392400 chr4B 90.157 447 41 3 471 915 294099411 294099856 3.690000e-161 579.0
13 TraesCS1B01G392400 chr4B 83.051 236 29 7 1223 1448 237985489 237985255 2.590000e-48 204.0
14 TraesCS1B01G392400 chr7B 90.604 447 39 3 471 915 596287422 596286977 1.700000e-164 590.0
15 TraesCS1B01G392400 chr7A 81.518 303 27 16 1 291 595541116 595540831 7.160000e-54 222.0
16 TraesCS1B01G392400 chr7A 83.186 226 28 6 1233 1448 643653687 643653462 1.210000e-46 198.0
17 TraesCS1B01G392400 chr7D 82.716 243 32 7 59 291 161579439 161579197 2.000000e-49 207.0
18 TraesCS1B01G392400 chr7D 87.654 81 7 1 470 547 161578628 161578548 2.110000e-14 91.6
19 TraesCS1B01G392400 chr2B 83.260 227 27 7 1233 1448 190181056 190180830 1.210000e-46 198.0
20 TraesCS1B01G392400 chr2D 83.523 176 11 8 20 187 620966594 620966429 1.230000e-31 148.0
21 TraesCS1B01G392400 chr5D 87.654 81 7 1 470 547 453000941 453001021 2.110000e-14 91.6
22 TraesCS1B01G392400 chr3A 86.667 75 8 2 2651 2724 690908555 690908628 1.270000e-11 82.4
23 TraesCS1B01G392400 chr3D 100.000 29 0 0 159 187 434498265 434498237 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G392400 chr1B 625567368 625572857 5489 True 4814.500000 9226 100.000 1 5490 2 chr1B.!!$R2 5489
1 TraesCS1B01G392400 chr1B 625505232 625508626 3394 True 4726.000000 4726 91.753 1357 4796 1 chr1B.!!$R1 3439
2 TraesCS1B01G392400 chr1D 455080800 455085728 4928 True 2165.333333 6078 86.806 318 5490 3 chr1D.!!$R2 5172
3 TraesCS1B01G392400 chr1A 548941081 548945705 4624 True 6078.000000 6078 90.539 177 4785 1 chr1A.!!$R1 4608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.036294 GCGCCTCTAGTTCCCTTGTT 60.036 55.0 0.00 0.0 0.00 2.83 F
1608 1638 0.326595 TGGAAGGTAAGCGCCATTCA 59.673 50.0 2.29 0.0 0.00 2.57 F
1713 1743 0.394565 GATGGCTATGGTCTCGCCTT 59.605 55.0 0.00 0.0 44.09 4.35 F
3574 3622 0.460284 CGCAGCAGACTATTTCGGGT 60.460 55.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1686 1.446016 AGCACTAGGGTTGGGAACTT 58.554 50.0 0.00 0.00 0.00 2.66 R
3350 3398 2.862597 AGGAGTAGGTTCCTCATCTCCT 59.137 50.0 22.05 22.05 44.33 3.69 R
3662 3739 2.289002 GGTGTGAAACTTCTCTGCACAG 59.711 50.0 0.00 0.00 39.80 3.66 R
5443 5607 0.036483 TTTCGGCTGCTGCTGTATGA 60.036 50.0 22.05 2.01 45.38 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.162690 GCCTGATTCCGCCCGACT 62.163 66.667 0.00 0.00 0.00 4.18
20 21 2.584608 CCTGATTCCGCCCGACTT 59.415 61.111 0.00 0.00 0.00 3.01
21 22 1.521681 CCTGATTCCGCCCGACTTC 60.522 63.158 0.00 0.00 0.00 3.01
22 23 1.878522 CTGATTCCGCCCGACTTCG 60.879 63.158 0.00 0.00 39.44 3.79
23 24 2.279502 CTGATTCCGCCCGACTTCGA 62.280 60.000 0.00 0.00 43.02 3.71
24 25 1.067582 GATTCCGCCCGACTTCGAT 59.932 57.895 0.00 0.00 43.02 3.59
25 26 0.529992 GATTCCGCCCGACTTCGATT 60.530 55.000 0.00 0.00 43.02 3.34
26 27 0.529992 ATTCCGCCCGACTTCGATTC 60.530 55.000 0.00 0.00 43.02 2.52
27 28 2.877360 TTCCGCCCGACTTCGATTCG 62.877 60.000 9.42 9.42 43.02 3.34
34 35 2.905260 CGACTTCGATTCGGTATTGC 57.095 50.000 6.18 0.00 43.02 3.56
35 36 1.521423 CGACTTCGATTCGGTATTGCC 59.479 52.381 6.18 0.00 43.02 4.52
36 37 2.798499 CGACTTCGATTCGGTATTGCCT 60.798 50.000 6.18 0.00 43.02 4.75
37 38 2.795470 GACTTCGATTCGGTATTGCCTC 59.205 50.000 6.18 0.00 34.25 4.70
38 39 2.135933 CTTCGATTCGGTATTGCCTCC 58.864 52.381 6.18 0.00 34.25 4.30
39 40 1.410004 TCGATTCGGTATTGCCTCCT 58.590 50.000 6.18 0.00 34.25 3.69
40 41 1.340248 TCGATTCGGTATTGCCTCCTC 59.660 52.381 6.18 0.00 34.25 3.71
41 42 1.605712 CGATTCGGTATTGCCTCCTCC 60.606 57.143 0.00 0.00 34.25 4.30
42 43 1.694696 GATTCGGTATTGCCTCCTCCT 59.305 52.381 0.00 0.00 34.25 3.69
43 44 1.120530 TTCGGTATTGCCTCCTCCTC 58.879 55.000 0.00 0.00 34.25 3.71
44 45 0.759436 TCGGTATTGCCTCCTCCTCC 60.759 60.000 0.00 0.00 34.25 4.30
45 46 0.760945 CGGTATTGCCTCCTCCTCCT 60.761 60.000 0.00 0.00 34.25 3.69
46 47 1.052617 GGTATTGCCTCCTCCTCCTC 58.947 60.000 0.00 0.00 0.00 3.71
47 48 1.052617 GTATTGCCTCCTCCTCCTCC 58.947 60.000 0.00 0.00 0.00 4.30
48 49 0.944999 TATTGCCTCCTCCTCCTCCT 59.055 55.000 0.00 0.00 0.00 3.69
49 50 0.399806 ATTGCCTCCTCCTCCTCCTC 60.400 60.000 0.00 0.00 0.00 3.71
50 51 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
51 52 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
52 53 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
53 54 0.998945 CCTCCTCCTCCTCCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
54 55 0.478507 CTCCTCCTCCTCCTCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
55 56 0.996762 TCCTCCTCCTCCTCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
56 57 1.541672 CTCCTCCTCCTCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
57 58 2.197324 CCTCCTCCTCCTCTCCCG 59.803 72.222 0.00 0.00 0.00 5.14
58 59 2.695970 CCTCCTCCTCCTCTCCCGT 61.696 68.421 0.00 0.00 0.00 5.28
59 60 1.152839 CTCCTCCTCCTCTCCCGTC 60.153 68.421 0.00 0.00 0.00 4.79
60 61 2.123640 CCTCCTCCTCTCCCGTCC 60.124 72.222 0.00 0.00 0.00 4.79
61 62 2.517402 CTCCTCCTCTCCCGTCCG 60.517 72.222 0.00 0.00 0.00 4.79
62 63 4.816984 TCCTCCTCTCCCGTCCGC 62.817 72.222 0.00 0.00 0.00 5.54
63 64 4.824515 CCTCCTCTCCCGTCCGCT 62.825 72.222 0.00 0.00 0.00 5.52
64 65 3.213402 CTCCTCTCCCGTCCGCTC 61.213 72.222 0.00 0.00 0.00 5.03
65 66 4.816984 TCCTCTCCCGTCCGCTCC 62.817 72.222 0.00 0.00 0.00 4.70
79 80 4.394712 CTCCCGGTTCTTGCGCCT 62.395 66.667 4.18 0.00 0.00 5.52
80 81 4.388499 TCCCGGTTCTTGCGCCTC 62.388 66.667 4.18 0.00 0.00 4.70
81 82 4.394712 CCCGGTTCTTGCGCCTCT 62.395 66.667 4.18 0.00 0.00 3.69
82 83 2.577059 CCGGTTCTTGCGCCTCTA 59.423 61.111 4.18 0.00 0.00 2.43
83 84 1.519455 CCGGTTCTTGCGCCTCTAG 60.519 63.158 4.18 0.00 0.00 2.43
84 85 1.215647 CGGTTCTTGCGCCTCTAGT 59.784 57.895 4.18 0.00 0.00 2.57
85 86 0.389948 CGGTTCTTGCGCCTCTAGTT 60.390 55.000 4.18 0.00 0.00 2.24
86 87 1.360820 GGTTCTTGCGCCTCTAGTTC 58.639 55.000 4.18 0.00 0.00 3.01
87 88 1.360820 GTTCTTGCGCCTCTAGTTCC 58.639 55.000 4.18 0.00 0.00 3.62
88 89 0.249398 TTCTTGCGCCTCTAGTTCCC 59.751 55.000 4.18 0.00 0.00 3.97
89 90 0.614979 TCTTGCGCCTCTAGTTCCCT 60.615 55.000 4.18 0.00 0.00 4.20
90 91 0.250513 CTTGCGCCTCTAGTTCCCTT 59.749 55.000 4.18 0.00 0.00 3.95
91 92 0.036388 TTGCGCCTCTAGTTCCCTTG 60.036 55.000 4.18 0.00 0.00 3.61
92 93 1.192146 TGCGCCTCTAGTTCCCTTGT 61.192 55.000 4.18 0.00 0.00 3.16
93 94 0.036294 GCGCCTCTAGTTCCCTTGTT 60.036 55.000 0.00 0.00 0.00 2.83
94 95 2.007547 GCGCCTCTAGTTCCCTTGTTC 61.008 57.143 0.00 0.00 0.00 3.18
95 96 1.550976 CGCCTCTAGTTCCCTTGTTCT 59.449 52.381 0.00 0.00 0.00 3.01
96 97 2.417515 CGCCTCTAGTTCCCTTGTTCTC 60.418 54.545 0.00 0.00 0.00 2.87
97 98 2.567615 GCCTCTAGTTCCCTTGTTCTCA 59.432 50.000 0.00 0.00 0.00 3.27
98 99 3.617775 GCCTCTAGTTCCCTTGTTCTCAC 60.618 52.174 0.00 0.00 0.00 3.51
99 100 3.055747 CCTCTAGTTCCCTTGTTCTCACC 60.056 52.174 0.00 0.00 0.00 4.02
100 101 3.835395 CTCTAGTTCCCTTGTTCTCACCT 59.165 47.826 0.00 0.00 0.00 4.00
101 102 4.232091 TCTAGTTCCCTTGTTCTCACCTT 58.768 43.478 0.00 0.00 0.00 3.50
102 103 3.493767 AGTTCCCTTGTTCTCACCTTC 57.506 47.619 0.00 0.00 0.00 3.46
103 104 2.106684 AGTTCCCTTGTTCTCACCTTCC 59.893 50.000 0.00 0.00 0.00 3.46
104 105 2.106684 GTTCCCTTGTTCTCACCTTCCT 59.893 50.000 0.00 0.00 0.00 3.36
105 106 1.978580 TCCCTTGTTCTCACCTTCCTC 59.021 52.381 0.00 0.00 0.00 3.71
106 107 1.981495 CCCTTGTTCTCACCTTCCTCT 59.019 52.381 0.00 0.00 0.00 3.69
107 108 2.373502 CCCTTGTTCTCACCTTCCTCTT 59.626 50.000 0.00 0.00 0.00 2.85
108 109 3.558109 CCCTTGTTCTCACCTTCCTCTTC 60.558 52.174 0.00 0.00 0.00 2.87
109 110 3.326297 CCTTGTTCTCACCTTCCTCTTCT 59.674 47.826 0.00 0.00 0.00 2.85
110 111 4.562552 CCTTGTTCTCACCTTCCTCTTCTC 60.563 50.000 0.00 0.00 0.00 2.87
111 112 2.900546 TGTTCTCACCTTCCTCTTCTCC 59.099 50.000 0.00 0.00 0.00 3.71
112 113 3.169908 GTTCTCACCTTCCTCTTCTCCT 58.830 50.000 0.00 0.00 0.00 3.69
113 114 4.202684 TGTTCTCACCTTCCTCTTCTCCTA 60.203 45.833 0.00 0.00 0.00 2.94
114 115 3.970842 TCTCACCTTCCTCTTCTCCTAC 58.029 50.000 0.00 0.00 0.00 3.18
115 116 2.685897 CTCACCTTCCTCTTCTCCTACG 59.314 54.545 0.00 0.00 0.00 3.51
116 117 2.307980 TCACCTTCCTCTTCTCCTACGA 59.692 50.000 0.00 0.00 0.00 3.43
117 118 3.053544 TCACCTTCCTCTTCTCCTACGAT 60.054 47.826 0.00 0.00 0.00 3.73
118 119 3.702045 CACCTTCCTCTTCTCCTACGATT 59.298 47.826 0.00 0.00 0.00 3.34
119 120 3.702045 ACCTTCCTCTTCTCCTACGATTG 59.298 47.826 0.00 0.00 0.00 2.67
120 121 3.068873 CCTTCCTCTTCTCCTACGATTGG 59.931 52.174 0.00 0.00 0.00 3.16
121 122 3.664551 TCCTCTTCTCCTACGATTGGA 57.335 47.619 0.00 0.00 0.00 3.53
122 123 4.186077 TCCTCTTCTCCTACGATTGGAT 57.814 45.455 0.00 0.00 32.56 3.41
123 124 4.547671 TCCTCTTCTCCTACGATTGGATT 58.452 43.478 0.00 0.00 32.56 3.01
124 125 4.342378 TCCTCTTCTCCTACGATTGGATTG 59.658 45.833 0.00 0.00 32.56 2.67
125 126 4.054671 CTCTTCTCCTACGATTGGATTGC 58.945 47.826 0.00 0.00 32.56 3.56
126 127 2.910688 TCTCCTACGATTGGATTGCC 57.089 50.000 0.00 0.00 32.56 4.52
127 128 2.115427 TCTCCTACGATTGGATTGCCA 58.885 47.619 0.00 0.00 44.17 4.92
135 136 2.045045 TGGATTGCCAAGGCCTCG 60.045 61.111 5.23 0.00 42.49 4.63
136 137 2.044946 GGATTGCCAAGGCCTCGT 60.045 61.111 5.23 0.00 41.09 4.18
137 138 2.115291 GGATTGCCAAGGCCTCGTC 61.115 63.158 5.23 0.00 41.09 4.20
138 139 2.044946 ATTGCCAAGGCCTCGTCC 60.045 61.111 5.23 0.00 41.09 4.79
139 140 3.645268 ATTGCCAAGGCCTCGTCCC 62.645 63.158 5.23 0.00 41.09 4.46
142 143 3.646715 CCAAGGCCTCGTCCCCAA 61.647 66.667 5.23 0.00 0.00 4.12
143 144 2.045926 CAAGGCCTCGTCCCCAAG 60.046 66.667 5.23 0.00 0.00 3.61
144 145 3.330720 AAGGCCTCGTCCCCAAGG 61.331 66.667 5.23 0.00 35.65 3.61
241 242 3.419759 GCTTCTCCGCGGCGAAAA 61.420 61.111 28.63 10.54 0.00 2.29
251 252 0.454196 GCGGCGAAAACATTGGGTAT 59.546 50.000 12.98 0.00 0.00 2.73
270 274 3.053291 TGCGTGCGACAAATCCCC 61.053 61.111 0.00 0.00 0.00 4.81
280 284 3.421844 CGACAAATCCCCCTTTTCTTCT 58.578 45.455 0.00 0.00 0.00 2.85
281 285 3.440522 CGACAAATCCCCCTTTTCTTCTC 59.559 47.826 0.00 0.00 0.00 2.87
309 313 4.821589 GCGGGGGCTCTCGTCTTG 62.822 72.222 8.16 0.00 0.00 3.02
310 314 3.382832 CGGGGGCTCTCGTCTTGT 61.383 66.667 0.00 0.00 0.00 3.16
311 315 2.579738 GGGGGCTCTCGTCTTGTC 59.420 66.667 0.00 0.00 0.00 3.18
446 451 2.711009 TCGCCTTTAATCCCCTGATGAT 59.289 45.455 0.00 0.00 0.00 2.45
453 462 7.067981 GCCTTTAATCCCCTGATGATGATTATC 59.932 40.741 0.00 0.00 31.73 1.75
454 463 7.559170 CCTTTAATCCCCTGATGATGATTATCC 59.441 40.741 0.00 0.00 31.73 2.59
455 464 4.767578 ATCCCCTGATGATGATTATCCG 57.232 45.455 0.00 0.00 32.09 4.18
456 465 3.520696 TCCCCTGATGATGATTATCCGT 58.479 45.455 0.00 0.00 32.09 4.69
457 466 3.261643 TCCCCTGATGATGATTATCCGTG 59.738 47.826 0.00 0.00 32.09 4.94
458 467 3.603532 CCCTGATGATGATTATCCGTGG 58.396 50.000 0.00 0.00 32.09 4.94
459 468 3.005554 CCTGATGATGATTATCCGTGGC 58.994 50.000 0.00 0.00 32.09 5.01
460 469 3.557686 CCTGATGATGATTATCCGTGGCA 60.558 47.826 0.00 0.00 32.09 4.92
461 470 4.067192 CTGATGATGATTATCCGTGGCAA 58.933 43.478 0.00 0.00 32.09 4.52
462 471 4.067192 TGATGATGATTATCCGTGGCAAG 58.933 43.478 0.00 0.00 32.09 4.01
473 488 4.695217 TCCGTGGCAAGAAAATCAATAC 57.305 40.909 0.76 0.00 0.00 1.89
476 491 6.119536 TCCGTGGCAAGAAAATCAATACTAT 58.880 36.000 0.76 0.00 0.00 2.12
502 520 7.962964 TCATCTTGCCGTATTAATTTCCTAG 57.037 36.000 0.00 0.00 0.00 3.02
506 524 8.015185 TCTTGCCGTATTAATTTCCTAGTACT 57.985 34.615 0.00 0.00 0.00 2.73
507 525 8.139989 TCTTGCCGTATTAATTTCCTAGTACTC 58.860 37.037 0.00 0.00 0.00 2.59
527 545 5.105752 ACTCTAGTTCATTGATGCGAGTTC 58.894 41.667 0.00 0.00 0.00 3.01
536 554 1.144969 GATGCGAGTTCCGTGTTTCA 58.855 50.000 0.00 0.00 41.15 2.69
555 573 6.072728 TGTTTCAGGTCAGTTTAATTGATCCG 60.073 38.462 0.00 0.00 0.00 4.18
566 584 7.549488 CAGTTTAATTGATCCGAGTATATCCCC 59.451 40.741 0.00 0.00 0.00 4.81
567 585 6.555463 TTAATTGATCCGAGTATATCCCCC 57.445 41.667 0.00 0.00 0.00 5.40
724 745 4.708726 AGCAGTTGCATTATTCCACTTC 57.291 40.909 6.90 0.00 45.16 3.01
726 747 4.082571 AGCAGTTGCATTATTCCACTTCAC 60.083 41.667 6.90 0.00 45.16 3.18
744 765 0.770557 ACTACTGGCCACCCTTTCCA 60.771 55.000 0.00 0.00 0.00 3.53
757 778 2.230992 CCCTTTCCATGTCATTTTCGCA 59.769 45.455 0.00 0.00 0.00 5.10
776 797 2.216898 CAGTAGCCTTTCATGCTAGCC 58.783 52.381 13.29 0.00 41.70 3.93
786 807 2.564771 TCATGCTAGCCGATTCCAAAG 58.435 47.619 13.29 0.00 0.00 2.77
793 814 0.810648 GCCGATTCCAAAGCACATGA 59.189 50.000 0.00 0.00 0.00 3.07
796 817 2.684374 CCGATTCCAAAGCACATGATCA 59.316 45.455 0.00 0.00 0.00 2.92
828 849 8.712228 ATCAGTTTACTTTTGAGATTTTCCCT 57.288 30.769 0.00 0.00 0.00 4.20
829 850 7.940850 TCAGTTTACTTTTGAGATTTTCCCTG 58.059 34.615 0.00 0.00 0.00 4.45
830 851 7.559897 TCAGTTTACTTTTGAGATTTTCCCTGT 59.440 33.333 0.00 0.00 0.00 4.00
831 852 8.846211 CAGTTTACTTTTGAGATTTTCCCTGTA 58.154 33.333 0.00 0.00 0.00 2.74
916 938 6.316640 GGAGAAGCTCCCTATTGTTTTCTAAC 59.683 42.308 1.97 0.00 44.36 2.34
919 941 4.224370 AGCTCCCTATTGTTTTCTAACGGA 59.776 41.667 0.00 0.00 37.06 4.69
939 961 6.582636 ACGGATTCTTGTTCTGCTATGATTA 58.417 36.000 0.00 0.00 0.00 1.75
959 981 8.974060 TGATTATTACAGGTTCCATAACTTCC 57.026 34.615 0.00 0.00 35.81 3.46
960 982 8.553153 TGATTATTACAGGTTCCATAACTTCCA 58.447 33.333 0.00 0.00 35.81 3.53
961 983 9.403583 GATTATTACAGGTTCCATAACTTCCAA 57.596 33.333 0.00 0.00 35.81 3.53
963 985 4.724279 ACAGGTTCCATAACTTCCAACT 57.276 40.909 0.00 0.00 35.81 3.16
1011 1033 1.821136 TCGAGAAAGATGAGAGCAGCA 59.179 47.619 0.00 0.00 31.43 4.41
1132 1154 1.588139 CGTAGTTCCGCATCCCGTC 60.588 63.158 0.00 0.00 34.38 4.79
1161 1183 2.032290 CACAGTGCGCCATAATGATGAG 60.032 50.000 4.18 0.00 34.73 2.90
1162 1184 2.216046 CAGTGCGCCATAATGATGAGT 58.784 47.619 4.18 0.00 34.73 3.41
1219 1241 1.545428 GGAACATGTTCTCCACTGCCA 60.545 52.381 31.81 0.00 39.45 4.92
1244 1266 6.149807 ACGGCTGATTCGATTAAAGGTTTTAA 59.850 34.615 0.00 0.00 0.00 1.52
1245 1267 6.468000 CGGCTGATTCGATTAAAGGTTTTAAC 59.532 38.462 0.00 0.00 0.00 2.01
1247 1269 8.027189 GGCTGATTCGATTAAAGGTTTTAACTT 58.973 33.333 0.00 0.00 0.00 2.66
1304 1334 2.865343 GCTGGAGGCATTTGAATCAG 57.135 50.000 0.00 0.00 41.35 2.90
1426 1456 8.281531 AGGTTATTGAATTGGACCTGATCAATA 58.718 33.333 16.05 16.05 40.26 1.90
1433 1463 8.477256 TGAATTGGACCTGATCAATATTTTTCC 58.523 33.333 0.00 0.00 33.72 3.13
1463 1493 7.054124 TGATTTCCTTGAGTGTTTTACTGACT 58.946 34.615 0.00 0.00 40.53 3.41
1464 1494 6.677781 TTTCCTTGAGTGTTTTACTGACTG 57.322 37.500 0.00 0.00 40.53 3.51
1467 1497 6.177610 TCCTTGAGTGTTTTACTGACTGTTT 58.822 36.000 0.00 0.00 40.53 2.83
1562 1592 0.680280 ATGAAGAAGCCTGCCAGCTG 60.680 55.000 6.78 6.78 44.11 4.24
1603 1633 1.671328 GAAATCTGGAAGGTAAGCGCC 59.329 52.381 2.29 0.00 0.00 6.53
1607 1637 1.017387 CTGGAAGGTAAGCGCCATTC 58.983 55.000 2.29 1.86 0.00 2.67
1608 1638 0.326595 TGGAAGGTAAGCGCCATTCA 59.673 50.000 2.29 0.00 0.00 2.57
1616 1646 0.668401 AAGCGCCATTCAAAAGCAGC 60.668 50.000 2.29 0.00 0.00 5.25
1617 1647 1.080298 GCGCCATTCAAAAGCAGCT 60.080 52.632 0.00 0.00 0.00 4.24
1619 1649 1.900237 CGCCATTCAAAAGCAGCTAC 58.100 50.000 0.00 0.00 0.00 3.58
1622 1652 3.126858 CGCCATTCAAAAGCAGCTACTTA 59.873 43.478 0.00 0.00 0.00 2.24
1639 1669 5.758784 GCTACTTAACATAGTAAGCAAGGGG 59.241 44.000 0.00 0.00 34.92 4.79
1649 1679 4.751431 GCAAGGGGCTGATTGAGT 57.249 55.556 1.94 0.00 40.25 3.41
1651 1681 2.128771 GCAAGGGGCTGATTGAGTTA 57.871 50.000 1.94 0.00 40.25 2.24
1652 1682 2.659428 GCAAGGGGCTGATTGAGTTAT 58.341 47.619 1.94 0.00 40.25 1.89
1653 1683 2.620585 GCAAGGGGCTGATTGAGTTATC 59.379 50.000 1.94 0.00 40.25 1.75
1654 1684 3.217626 CAAGGGGCTGATTGAGTTATCC 58.782 50.000 0.00 0.00 0.00 2.59
1655 1685 2.781667 AGGGGCTGATTGAGTTATCCT 58.218 47.619 0.00 0.00 0.00 3.24
1656 1686 3.941629 AGGGGCTGATTGAGTTATCCTA 58.058 45.455 0.00 0.00 0.00 2.94
1657 1687 4.307259 AGGGGCTGATTGAGTTATCCTAA 58.693 43.478 0.00 0.00 0.00 2.69
1658 1688 4.349342 AGGGGCTGATTGAGTTATCCTAAG 59.651 45.833 0.00 0.00 0.00 2.18
1659 1689 4.103311 GGGGCTGATTGAGTTATCCTAAGT 59.897 45.833 0.00 0.00 0.00 2.24
1663 1693 5.760743 GCTGATTGAGTTATCCTAAGTTCCC 59.239 44.000 0.00 0.00 0.00 3.97
1674 1704 2.355818 CCTAAGTTCCCAACCCTAGTGC 60.356 54.545 0.00 0.00 0.00 4.40
1686 1716 5.476945 CCAACCCTAGTGCTTTCTGTTTAAT 59.523 40.000 0.00 0.00 0.00 1.40
1713 1743 0.394565 GATGGCTATGGTCTCGCCTT 59.605 55.000 0.00 0.00 44.09 4.35
1732 1762 2.890808 TATTGCTCAGCCTTCTACCG 57.109 50.000 0.00 0.00 0.00 4.02
1734 1764 1.195115 TTGCTCAGCCTTCTACCGAT 58.805 50.000 0.00 0.00 0.00 4.18
1800 1830 3.321111 GGAAGACGATGCTTATGGACCTA 59.679 47.826 0.00 0.00 0.00 3.08
1820 1850 6.284459 ACCTATTCTATGAGCAACTGTAAGC 58.716 40.000 0.00 0.00 37.60 3.09
1821 1851 6.127054 ACCTATTCTATGAGCAACTGTAAGCA 60.127 38.462 7.71 0.00 37.60 3.91
1826 1856 3.811722 TGAGCAACTGTAAGCAAATCG 57.188 42.857 7.71 0.00 37.60 3.34
1897 1927 3.483196 CACGAACTTGAAAGTGCACATTG 59.517 43.478 21.04 4.32 39.66 2.82
1936 1967 6.382859 ACCAGATATATTCATGGCGGTGTATA 59.617 38.462 10.79 0.00 36.21 1.47
2348 2392 7.450014 TGAAGATGCCTGGAAAATAAACTGTAA 59.550 33.333 0.00 0.00 0.00 2.41
2369 2413 7.166167 TGTAACCTATCTTCCTTTGGTTCTTC 58.834 38.462 0.00 0.00 40.84 2.87
2395 2439 6.976349 TGCTATGTGGTATTAACTAGACAACG 59.024 38.462 0.00 0.00 0.00 4.10
2397 2441 7.866393 GCTATGTGGTATTAACTAGACAACGAT 59.134 37.037 0.00 0.00 0.00 3.73
2555 2599 5.810587 TCATAGTCGTCTGCAGGTATTTTTC 59.189 40.000 15.13 0.00 0.00 2.29
2566 2611 5.106475 TGCAGGTATTTTTCGTGGTTATGAC 60.106 40.000 0.00 0.00 0.00 3.06
2576 2621 4.954875 TCGTGGTTATGACATATGCATCA 58.045 39.130 0.19 7.09 0.00 3.07
2577 2622 5.363939 TCGTGGTTATGACATATGCATCAA 58.636 37.500 0.19 0.00 0.00 2.57
2766 2811 4.764679 TTCAATGCTCGTTTGCTAACAT 57.235 36.364 11.52 0.00 33.75 2.71
2768 2813 5.216566 TCAATGCTCGTTTGCTAACATAC 57.783 39.130 11.52 0.30 33.75 2.39
2769 2814 4.935205 TCAATGCTCGTTTGCTAACATACT 59.065 37.500 11.52 0.00 33.75 2.12
2773 2818 3.000971 GCTCGTTTGCTAACATACTCGAC 60.001 47.826 11.52 0.00 33.75 4.20
3068 3115 3.619483 CACCTTGAAAGTACGTGTTGTCA 59.381 43.478 0.00 0.00 0.00 3.58
3116 3163 4.808414 AGTTCAATCTGCTAGTGTGCTA 57.192 40.909 0.00 0.00 0.00 3.49
3234 3282 7.962918 CCTACTGTTGCAAGTTATGTATTTGTC 59.037 37.037 0.00 0.00 0.00 3.18
3252 3300 5.592104 TTGTCTTTTCCAGTTTTCCCTTC 57.408 39.130 0.00 0.00 0.00 3.46
3574 3622 0.460284 CGCAGCAGACTATTTCGGGT 60.460 55.000 0.00 0.00 0.00 5.28
3646 3723 3.549471 GCTACTGTTGATGTGATCTGACG 59.451 47.826 0.00 0.00 0.00 4.35
3662 3739 3.810941 TCTGACGGACACCAAAATGTTAC 59.189 43.478 0.00 0.00 31.24 2.50
3798 3875 7.776107 TCCTTAGTCTGTCATCTTCTATGTTG 58.224 38.462 0.00 0.00 0.00 3.33
3906 3992 4.440103 GGCAGATATACACGTTCGTTAGTG 59.560 45.833 0.00 5.63 43.46 2.74
3908 3994 4.440103 CAGATATACACGTTCGTTAGTGGC 59.560 45.833 10.45 0.00 42.25 5.01
3913 3999 2.029649 ACACGTTCGTTAGTGGCAGTAT 60.030 45.455 2.28 0.00 42.25 2.12
3914 4000 3.191162 ACACGTTCGTTAGTGGCAGTATA 59.809 43.478 2.28 0.00 42.25 1.47
3968 4063 5.724328 TCTGGTGAAGCTAGTATTGTTCTG 58.276 41.667 0.00 0.00 0.00 3.02
3983 4078 7.815068 AGTATTGTTCTGATTATATGAGACGGC 59.185 37.037 0.00 0.00 0.00 5.68
3986 4081 5.301805 TGTTCTGATTATATGAGACGGCAGA 59.698 40.000 0.00 0.00 0.00 4.26
4012 4107 5.645497 AGTAGAATCAGTTTGCACTTGATCC 59.355 40.000 7.11 0.00 0.00 3.36
4018 4140 4.278170 TCAGTTTGCACTTGATCCGAAATT 59.722 37.500 0.00 0.00 0.00 1.82
4019 4141 4.984161 CAGTTTGCACTTGATCCGAAATTT 59.016 37.500 0.00 0.00 0.00 1.82
4021 4143 5.691754 AGTTTGCACTTGATCCGAAATTTTC 59.308 36.000 0.00 0.00 0.00 2.29
4023 4145 4.797471 TGCACTTGATCCGAAATTTTCTG 58.203 39.130 7.50 1.22 0.00 3.02
4024 4146 3.609807 GCACTTGATCCGAAATTTTCTGC 59.390 43.478 7.50 4.25 0.00 4.26
4025 4147 4.616835 GCACTTGATCCGAAATTTTCTGCT 60.617 41.667 7.50 0.00 0.00 4.24
4026 4148 4.855388 CACTTGATCCGAAATTTTCTGCTG 59.145 41.667 7.50 0.00 0.00 4.41
4027 4149 4.761739 ACTTGATCCGAAATTTTCTGCTGA 59.238 37.500 7.50 0.00 0.00 4.26
4028 4150 5.416952 ACTTGATCCGAAATTTTCTGCTGAT 59.583 36.000 7.50 4.42 0.00 2.90
4029 4151 6.599244 ACTTGATCCGAAATTTTCTGCTGATA 59.401 34.615 7.50 0.00 0.00 2.15
4030 4152 6.609237 TGATCCGAAATTTTCTGCTGATAG 57.391 37.500 7.50 0.00 0.00 2.08
4031 4153 5.528690 TGATCCGAAATTTTCTGCTGATAGG 59.471 40.000 7.50 0.00 0.00 2.57
4032 4154 3.627577 TCCGAAATTTTCTGCTGATAGGC 59.372 43.478 7.50 0.00 0.00 3.93
4033 4155 3.378112 CCGAAATTTTCTGCTGATAGGCA 59.622 43.478 7.50 0.00 40.15 4.75
4034 4156 4.037208 CCGAAATTTTCTGCTGATAGGCAT 59.963 41.667 7.50 0.00 41.63 4.40
4035 4157 5.239306 CCGAAATTTTCTGCTGATAGGCATA 59.761 40.000 7.50 0.00 41.63 3.14
4036 4158 6.238731 CCGAAATTTTCTGCTGATAGGCATAA 60.239 38.462 7.50 0.00 41.63 1.90
4037 4159 7.195646 CGAAATTTTCTGCTGATAGGCATAAA 58.804 34.615 7.50 0.00 41.63 1.40
4038 4160 7.864379 CGAAATTTTCTGCTGATAGGCATAAAT 59.136 33.333 7.50 0.00 41.63 1.40
4040 4162 9.971922 AAATTTTCTGCTGATAGGCATAAATAC 57.028 29.630 0.00 0.00 41.63 1.89
4041 4163 8.930846 ATTTTCTGCTGATAGGCATAAATACT 57.069 30.769 0.00 0.00 41.63 2.12
4042 4164 7.734924 TTTCTGCTGATAGGCATAAATACTG 57.265 36.000 0.00 0.00 41.63 2.74
4043 4165 6.425210 TCTGCTGATAGGCATAAATACTGT 57.575 37.500 0.00 0.00 41.63 3.55
4044 4166 7.539034 TCTGCTGATAGGCATAAATACTGTA 57.461 36.000 0.00 0.00 41.63 2.74
4045 4167 8.138928 TCTGCTGATAGGCATAAATACTGTAT 57.861 34.615 0.00 0.00 41.63 2.29
4046 4168 8.597167 TCTGCTGATAGGCATAAATACTGTATT 58.403 33.333 7.22 7.22 41.63 1.89
4047 4169 9.875691 CTGCTGATAGGCATAAATACTGTATTA 57.124 33.333 13.07 3.50 41.63 0.98
4048 4170 9.653287 TGCTGATAGGCATAAATACTGTATTAC 57.347 33.333 13.07 4.39 37.29 1.89
4049 4171 9.099454 GCTGATAGGCATAAATACTGTATTACC 57.901 37.037 13.07 11.90 0.00 2.85
4050 4172 9.302345 CTGATAGGCATAAATACTGTATTACCG 57.698 37.037 13.07 6.17 0.00 4.02
4051 4173 8.255206 TGATAGGCATAAATACTGTATTACCGG 58.745 37.037 13.07 0.00 0.00 5.28
4052 4174 5.801380 AGGCATAAATACTGTATTACCGGG 58.199 41.667 13.07 0.00 0.00 5.73
4053 4175 5.544948 AGGCATAAATACTGTATTACCGGGA 59.455 40.000 13.07 0.00 0.00 5.14
4090 4212 0.026803 CTGACGGCGCTAATGCTTTC 59.973 55.000 6.90 0.00 36.97 2.62
4216 4338 0.305009 CTAGATCTTCACGCTCGCGA 59.695 55.000 18.98 9.26 42.83 5.87
4249 4371 1.673033 CCCGATCTCTGTGTGGACAAC 60.673 57.143 0.00 0.00 0.00 3.32
4303 4425 1.207329 AGGTAATGAGGGTCGTGCTTC 59.793 52.381 0.00 0.00 0.00 3.86
4314 4440 2.271800 GTCGTGCTTCAGGAGGTTATG 58.728 52.381 0.00 0.00 0.00 1.90
4329 4455 6.385467 AGGAGGTTATGTCAGCTCTTATTCTT 59.615 38.462 0.35 0.00 40.54 2.52
4369 4495 0.897621 CCTGTTTTGCCCCCTTCATC 59.102 55.000 0.00 0.00 0.00 2.92
4457 4584 2.123897 AACAACCCCTGCACGCTT 60.124 55.556 0.00 0.00 0.00 4.68
4558 4685 4.062490 AGTATCTATTATCCCGCCTGGT 57.938 45.455 0.00 0.00 34.77 4.00
4586 4714 3.333381 TGGAGGAATGGGAGAAATGTTGA 59.667 43.478 0.00 0.00 0.00 3.18
4814 4948 7.201626 CCTGAGTTCAGATGAATCATGAAACTC 60.202 40.741 22.19 22.19 46.59 3.01
4819 4953 6.276091 TCAGATGAATCATGAAACTCGTAGG 58.724 40.000 0.00 0.00 0.00 3.18
4831 4965 3.069079 ACTCGTAGGCAGACTCTTGTA 57.931 47.619 0.00 0.00 0.00 2.41
4856 4990 7.308435 AGAATCAACAAGCTAACAAATACTGC 58.692 34.615 0.00 0.00 0.00 4.40
4862 4996 7.076842 ACAAGCTAACAAATACTGCACTATG 57.923 36.000 0.00 0.00 0.00 2.23
4902 5036 9.650714 TCCTTGAGATTCATTGGAAATGATTAT 57.349 29.630 3.65 0.00 36.43 1.28
4928 5062 7.936847 TGAGGCAGAGAGTTACAAAGAAATTAA 59.063 33.333 0.00 0.00 0.00 1.40
4939 5073 9.255304 GTTACAAAGAAATTAACAATGGAGCAA 57.745 29.630 0.00 0.00 0.00 3.91
4941 5075 7.271511 ACAAAGAAATTAACAATGGAGCAACA 58.728 30.769 0.00 0.00 0.00 3.33
4942 5076 7.933033 ACAAAGAAATTAACAATGGAGCAACAT 59.067 29.630 0.00 0.00 0.00 2.71
4943 5077 8.776470 CAAAGAAATTAACAATGGAGCAACATT 58.224 29.630 0.58 0.58 41.51 2.71
4944 5078 8.907222 AAGAAATTAACAATGGAGCAACATTT 57.093 26.923 3.45 0.00 38.94 2.32
4975 5109 7.012327 GGCTGTGTAAATCAACAGATGCTATTA 59.988 37.037 6.98 0.00 31.65 0.98
4984 5140 8.913487 ATCAACAGATGCTATTACATGATGAA 57.087 30.769 0.00 0.00 0.00 2.57
5320 5476 4.207891 TGGAGTTCCAACATTCTAGAGC 57.792 45.455 0.00 0.00 44.35 4.09
5325 5481 6.348868 GGAGTTCCAACATTCTAGAGCAAAAG 60.349 42.308 0.00 0.00 35.64 2.27
5326 5482 5.048434 AGTTCCAACATTCTAGAGCAAAAGC 60.048 40.000 0.00 0.00 0.00 3.51
5328 5484 4.216257 TCCAACATTCTAGAGCAAAAGCAC 59.784 41.667 0.00 0.00 0.00 4.40
5330 5486 5.507817 CCAACATTCTAGAGCAAAAGCACAA 60.508 40.000 0.00 0.00 0.00 3.33
5343 5499 4.961438 AAAGCACAATCCCAGAACAAAT 57.039 36.364 0.00 0.00 0.00 2.32
5349 5505 4.157289 CACAATCCCAGAACAAATGGAGAG 59.843 45.833 0.00 0.00 40.51 3.20
5370 5526 3.378427 AGCAGTTTCTTCAGTGTTGGAAC 59.622 43.478 0.00 0.00 0.00 3.62
5371 5527 3.788797 GCAGTTTCTTCAGTGTTGGAACG 60.789 47.826 0.00 0.00 0.00 3.95
5372 5528 3.621268 CAGTTTCTTCAGTGTTGGAACGA 59.379 43.478 0.00 0.00 0.00 3.85
5373 5529 3.621715 AGTTTCTTCAGTGTTGGAACGAC 59.378 43.478 0.00 0.00 0.00 4.34
5375 5531 2.546778 TCTTCAGTGTTGGAACGACAC 58.453 47.619 10.96 10.96 45.92 3.67
5381 5537 2.479837 GTGTTGGAACGACACATCTCA 58.520 47.619 13.43 0.00 45.13 3.27
5384 5540 2.438868 TGGAACGACACATCTCACAG 57.561 50.000 0.00 0.00 0.00 3.66
5386 5542 2.029918 TGGAACGACACATCTCACAGAG 60.030 50.000 0.00 0.00 0.00 3.35
5387 5543 2.600731 GAACGACACATCTCACAGAGG 58.399 52.381 0.00 0.00 31.33 3.69
5388 5544 1.621992 ACGACACATCTCACAGAGGT 58.378 50.000 0.00 0.00 40.21 3.85
5390 5546 2.750166 ACGACACATCTCACAGAGGTAG 59.250 50.000 0.00 0.00 37.10 3.18
5391 5547 2.098280 CGACACATCTCACAGAGGTAGG 59.902 54.545 0.00 0.00 37.10 3.18
5392 5548 3.357203 GACACATCTCACAGAGGTAGGA 58.643 50.000 0.00 0.00 37.10 2.94
5394 5550 5.130705 ACACATCTCACAGAGGTAGGATA 57.869 43.478 0.00 0.00 37.10 2.59
5395 5551 5.136828 ACACATCTCACAGAGGTAGGATAG 58.863 45.833 0.00 0.00 37.10 2.08
5396 5552 4.522405 CACATCTCACAGAGGTAGGATAGG 59.478 50.000 0.00 0.00 37.10 2.57
5399 5555 3.396276 TCTCACAGAGGTAGGATAGGAGG 59.604 52.174 0.00 0.00 0.00 4.30
5401 5557 3.792114 TCACAGAGGTAGGATAGGAGGAA 59.208 47.826 0.00 0.00 0.00 3.36
5403 5559 5.615692 TCACAGAGGTAGGATAGGAGGAATA 59.384 44.000 0.00 0.00 0.00 1.75
5404 5560 6.104243 TCACAGAGGTAGGATAGGAGGAATAA 59.896 42.308 0.00 0.00 0.00 1.40
5405 5561 6.782988 CACAGAGGTAGGATAGGAGGAATAAA 59.217 42.308 0.00 0.00 0.00 1.40
5406 5562 7.456269 CACAGAGGTAGGATAGGAGGAATAAAT 59.544 40.741 0.00 0.00 0.00 1.40
5407 5563 8.019652 ACAGAGGTAGGATAGGAGGAATAAATT 58.980 37.037 0.00 0.00 0.00 1.82
5434 5598 0.768221 TTGGAGCAGGTTCCTGGAGT 60.768 55.000 18.81 0.00 38.12 3.85
5443 5607 3.195825 CAGGTTCCTGGAGTTAACTCGAT 59.804 47.826 25.44 6.46 43.76 3.59
5459 5623 1.554891 CGATCATACAGCAGCAGCCG 61.555 60.000 0.00 0.00 43.56 5.52
5473 5637 2.887152 AGCAGCCGAAAGAAGATTTTGT 59.113 40.909 0.00 0.00 0.00 2.83
5478 5642 6.253746 CAGCCGAAAGAAGATTTTGTATCTG 58.746 40.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.682292 AAGTCGGGCGGAATCAGGC 62.682 63.158 0.00 0.00 0.00 4.85
3 4 1.521681 GAAGTCGGGCGGAATCAGG 60.522 63.158 0.00 0.00 0.00 3.86
4 5 1.878522 CGAAGTCGGGCGGAATCAG 60.879 63.158 0.00 0.00 35.37 2.90
5 6 1.672854 ATCGAAGTCGGGCGGAATCA 61.673 55.000 0.11 0.00 40.29 2.57
6 7 0.529992 AATCGAAGTCGGGCGGAATC 60.530 55.000 0.11 0.00 40.29 2.52
7 8 0.529992 GAATCGAAGTCGGGCGGAAT 60.530 55.000 0.11 0.00 40.29 3.01
8 9 1.153706 GAATCGAAGTCGGGCGGAA 60.154 57.895 0.11 0.00 40.29 4.30
9 10 2.493030 GAATCGAAGTCGGGCGGA 59.507 61.111 0.11 0.00 40.29 5.54
10 11 2.954868 CGAATCGAAGTCGGGCGG 60.955 66.667 12.66 0.00 40.29 6.13
15 16 1.521423 GGCAATACCGAATCGAAGTCG 59.479 52.381 3.36 13.34 41.45 4.18
16 17 2.795470 GAGGCAATACCGAATCGAAGTC 59.205 50.000 3.36 0.00 46.52 3.01
17 18 2.483188 GGAGGCAATACCGAATCGAAGT 60.483 50.000 3.36 0.00 46.52 3.01
18 19 2.135933 GGAGGCAATACCGAATCGAAG 58.864 52.381 3.36 0.00 46.52 3.79
19 20 1.760613 AGGAGGCAATACCGAATCGAA 59.239 47.619 3.36 0.00 46.52 3.71
20 21 1.340248 GAGGAGGCAATACCGAATCGA 59.660 52.381 3.36 0.00 46.52 3.59
21 22 1.605712 GGAGGAGGCAATACCGAATCG 60.606 57.143 0.00 0.00 46.52 3.34
22 23 1.694696 AGGAGGAGGCAATACCGAATC 59.305 52.381 0.00 0.00 46.52 2.52
23 24 1.694696 GAGGAGGAGGCAATACCGAAT 59.305 52.381 0.00 0.00 46.52 3.34
24 25 1.120530 GAGGAGGAGGCAATACCGAA 58.879 55.000 0.00 0.00 46.52 4.30
25 26 0.759436 GGAGGAGGAGGCAATACCGA 60.759 60.000 0.00 0.00 46.52 4.69
26 27 0.760945 AGGAGGAGGAGGCAATACCG 60.761 60.000 0.00 0.00 46.52 4.02
27 28 1.052617 GAGGAGGAGGAGGCAATACC 58.947 60.000 0.00 0.00 39.61 2.73
28 29 1.052617 GGAGGAGGAGGAGGCAATAC 58.947 60.000 0.00 0.00 0.00 1.89
29 30 0.944999 AGGAGGAGGAGGAGGCAATA 59.055 55.000 0.00 0.00 0.00 1.90
30 31 0.399806 GAGGAGGAGGAGGAGGCAAT 60.400 60.000 0.00 0.00 0.00 3.56
31 32 1.002274 GAGGAGGAGGAGGAGGCAA 59.998 63.158 0.00 0.00 0.00 4.52
32 33 2.693017 GAGGAGGAGGAGGAGGCA 59.307 66.667 0.00 0.00 0.00 4.75
33 34 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
34 35 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
35 36 0.478507 GAGAGGAGGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
36 37 0.996762 GGAGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
37 38 1.541672 GGAGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
38 39 1.541672 GGGAGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
39 40 2.387772 CGGGAGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 0.00 3.71
40 41 2.197324 CGGGAGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
41 42 1.152839 GACGGGAGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
42 43 2.691779 GGACGGGAGAGGAGGAGGA 61.692 68.421 0.00 0.00 0.00 3.71
43 44 2.123640 GGACGGGAGAGGAGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
44 45 2.517402 CGGACGGGAGAGGAGGAG 60.517 72.222 0.00 0.00 0.00 3.69
45 46 4.816984 GCGGACGGGAGAGGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
46 47 4.824515 AGCGGACGGGAGAGGAGG 62.825 72.222 0.00 0.00 0.00 4.30
47 48 3.213402 GAGCGGACGGGAGAGGAG 61.213 72.222 0.00 0.00 0.00 3.69
48 49 4.816984 GGAGCGGACGGGAGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
56 57 4.065281 AAGAACCGGGAGCGGACG 62.065 66.667 6.32 0.00 0.00 4.79
57 58 2.434359 CAAGAACCGGGAGCGGAC 60.434 66.667 6.32 0.00 0.00 4.79
58 59 4.388499 GCAAGAACCGGGAGCGGA 62.388 66.667 6.32 0.00 0.00 5.54
62 63 4.394712 AGGCGCAAGAACCGGGAG 62.395 66.667 10.83 0.00 43.02 4.30
63 64 4.388499 GAGGCGCAAGAACCGGGA 62.388 66.667 10.83 0.00 43.02 5.14
64 65 2.907897 CTAGAGGCGCAAGAACCGGG 62.908 65.000 10.83 0.00 43.02 5.73
65 66 1.519455 CTAGAGGCGCAAGAACCGG 60.519 63.158 10.83 0.00 43.02 5.28
66 67 0.389948 AACTAGAGGCGCAAGAACCG 60.390 55.000 10.83 0.00 43.02 4.44
67 68 1.360820 GAACTAGAGGCGCAAGAACC 58.639 55.000 10.83 0.00 43.02 3.62
68 69 1.360820 GGAACTAGAGGCGCAAGAAC 58.639 55.000 10.83 0.00 43.02 3.01
69 70 0.249398 GGGAACTAGAGGCGCAAGAA 59.751 55.000 10.83 0.00 43.02 2.52
70 71 0.614979 AGGGAACTAGAGGCGCAAGA 60.615 55.000 10.83 0.00 40.61 3.02
71 72 0.250513 AAGGGAACTAGAGGCGCAAG 59.749 55.000 10.83 2.97 42.68 4.01
72 73 0.036388 CAAGGGAACTAGAGGCGCAA 60.036 55.000 10.83 0.00 42.68 4.85
73 74 1.192146 ACAAGGGAACTAGAGGCGCA 61.192 55.000 10.83 0.00 42.68 6.09
74 75 0.036294 AACAAGGGAACTAGAGGCGC 60.036 55.000 0.00 0.00 42.68 6.53
75 76 1.550976 AGAACAAGGGAACTAGAGGCG 59.449 52.381 0.00 0.00 42.68 5.52
76 77 2.567615 TGAGAACAAGGGAACTAGAGGC 59.432 50.000 0.00 0.00 42.68 4.70
77 78 3.055747 GGTGAGAACAAGGGAACTAGAGG 60.056 52.174 0.00 0.00 42.68 3.69
78 79 3.835395 AGGTGAGAACAAGGGAACTAGAG 59.165 47.826 0.00 0.00 42.68 2.43
79 80 3.858135 AGGTGAGAACAAGGGAACTAGA 58.142 45.455 0.00 0.00 42.68 2.43
80 81 4.563786 GGAAGGTGAGAACAAGGGAACTAG 60.564 50.000 0.00 0.00 42.68 2.57
81 82 3.326880 GGAAGGTGAGAACAAGGGAACTA 59.673 47.826 0.00 0.00 42.68 2.24
83 84 2.106684 AGGAAGGTGAGAACAAGGGAAC 59.893 50.000 0.00 0.00 0.00 3.62
84 85 2.372172 GAGGAAGGTGAGAACAAGGGAA 59.628 50.000 0.00 0.00 0.00 3.97
85 86 1.978580 GAGGAAGGTGAGAACAAGGGA 59.021 52.381 0.00 0.00 0.00 4.20
86 87 1.981495 AGAGGAAGGTGAGAACAAGGG 59.019 52.381 0.00 0.00 0.00 3.95
87 88 3.326297 AGAAGAGGAAGGTGAGAACAAGG 59.674 47.826 0.00 0.00 0.00 3.61
88 89 4.562552 GGAGAAGAGGAAGGTGAGAACAAG 60.563 50.000 0.00 0.00 0.00 3.16
89 90 3.325135 GGAGAAGAGGAAGGTGAGAACAA 59.675 47.826 0.00 0.00 0.00 2.83
90 91 2.900546 GGAGAAGAGGAAGGTGAGAACA 59.099 50.000 0.00 0.00 0.00 3.18
91 92 3.169908 AGGAGAAGAGGAAGGTGAGAAC 58.830 50.000 0.00 0.00 0.00 3.01
92 93 3.551635 AGGAGAAGAGGAAGGTGAGAA 57.448 47.619 0.00 0.00 0.00 2.87
93 94 3.622704 CGTAGGAGAAGAGGAAGGTGAGA 60.623 52.174 0.00 0.00 0.00 3.27
94 95 2.685897 CGTAGGAGAAGAGGAAGGTGAG 59.314 54.545 0.00 0.00 0.00 3.51
95 96 2.307980 TCGTAGGAGAAGAGGAAGGTGA 59.692 50.000 0.00 0.00 0.00 4.02
96 97 2.724454 TCGTAGGAGAAGAGGAAGGTG 58.276 52.381 0.00 0.00 0.00 4.00
97 98 3.673543 ATCGTAGGAGAAGAGGAAGGT 57.326 47.619 0.00 0.00 0.00 3.50
98 99 3.068873 CCAATCGTAGGAGAAGAGGAAGG 59.931 52.174 0.00 0.00 0.00 3.46
99 100 3.954904 TCCAATCGTAGGAGAAGAGGAAG 59.045 47.826 0.00 0.00 0.00 3.46
100 101 3.977312 TCCAATCGTAGGAGAAGAGGAA 58.023 45.455 0.00 0.00 0.00 3.36
101 102 3.664551 TCCAATCGTAGGAGAAGAGGA 57.335 47.619 0.00 0.00 0.00 3.71
102 103 4.626042 CAATCCAATCGTAGGAGAAGAGG 58.374 47.826 0.00 0.00 38.83 3.69
103 104 4.054671 GCAATCCAATCGTAGGAGAAGAG 58.945 47.826 0.00 0.00 38.83 2.85
104 105 3.181465 GGCAATCCAATCGTAGGAGAAGA 60.181 47.826 0.00 0.00 38.83 2.87
105 106 3.134458 GGCAATCCAATCGTAGGAGAAG 58.866 50.000 0.00 0.00 38.83 2.85
106 107 2.503765 TGGCAATCCAATCGTAGGAGAA 59.496 45.455 0.00 0.00 39.99 2.87
107 108 2.115427 TGGCAATCCAATCGTAGGAGA 58.885 47.619 0.00 0.00 39.99 3.71
108 109 2.620251 TGGCAATCCAATCGTAGGAG 57.380 50.000 0.00 0.00 39.99 3.69
118 119 2.045045 CGAGGCCTTGGCAATCCA 60.045 61.111 12.81 0.00 41.55 3.41
119 120 2.044946 ACGAGGCCTTGGCAATCC 60.045 61.111 24.40 5.43 0.00 3.01
120 121 2.115291 GGACGAGGCCTTGGCAATC 61.115 63.158 27.96 13.56 0.00 2.67
121 122 2.044946 GGACGAGGCCTTGGCAAT 60.045 61.111 27.96 4.10 0.00 3.56
122 123 4.344865 GGGACGAGGCCTTGGCAA 62.345 66.667 27.96 0.00 0.00 4.52
125 126 3.628646 CTTGGGGACGAGGCCTTGG 62.629 68.421 24.40 13.79 38.28 3.61
126 127 2.045926 CTTGGGGACGAGGCCTTG 60.046 66.667 19.26 19.26 38.28 3.61
157 158 4.299796 TGGCTGGTTGCTTCCCCC 62.300 66.667 0.00 0.00 42.39 5.40
158 159 2.677875 CTGGCTGGTTGCTTCCCC 60.678 66.667 0.00 0.00 42.39 4.81
159 160 3.376918 GCTGGCTGGTTGCTTCCC 61.377 66.667 0.00 0.00 42.39 3.97
160 161 3.376918 GGCTGGCTGGTTGCTTCC 61.377 66.667 0.00 0.00 42.39 3.46
161 162 3.741476 CGGCTGGCTGGTTGCTTC 61.741 66.667 0.00 0.00 42.39 3.86
162 163 4.586235 ACGGCTGGCTGGTTGCTT 62.586 61.111 6.36 0.00 42.39 3.91
165 166 4.641645 TGGACGGCTGGCTGGTTG 62.642 66.667 0.00 0.00 0.00 3.77
166 167 4.643387 GTGGACGGCTGGCTGGTT 62.643 66.667 0.00 0.00 0.00 3.67
251 252 2.612567 GGGATTTGTCGCACGCACA 61.613 57.895 0.00 0.00 0.00 4.57
270 274 1.079503 CGGCGGAAGAGAAGAAAAGG 58.920 55.000 0.00 0.00 0.00 3.11
296 300 1.545706 AAGGGACAAGACGAGAGCCC 61.546 60.000 0.00 0.00 35.79 5.19
301 305 0.390472 GGAGCAAGGGACAAGACGAG 60.390 60.000 0.00 0.00 0.00 4.18
302 306 1.671742 GGAGCAAGGGACAAGACGA 59.328 57.895 0.00 0.00 0.00 4.20
303 307 1.376037 GGGAGCAAGGGACAAGACG 60.376 63.158 0.00 0.00 0.00 4.18
304 308 1.002011 GGGGAGCAAGGGACAAGAC 60.002 63.158 0.00 0.00 0.00 3.01
305 309 1.065410 TTGGGGAGCAAGGGACAAGA 61.065 55.000 0.00 0.00 0.00 3.02
306 310 0.178964 TTTGGGGAGCAAGGGACAAG 60.179 55.000 0.00 0.00 0.00 3.16
307 311 0.486879 ATTTGGGGAGCAAGGGACAA 59.513 50.000 0.00 0.00 0.00 3.18
308 312 0.251742 CATTTGGGGAGCAAGGGACA 60.252 55.000 0.00 0.00 0.00 4.02
309 313 0.251787 ACATTTGGGGAGCAAGGGAC 60.252 55.000 0.00 0.00 0.00 4.46
310 314 0.486879 AACATTTGGGGAGCAAGGGA 59.513 50.000 0.00 0.00 0.00 4.20
311 315 0.609662 CAACATTTGGGGAGCAAGGG 59.390 55.000 0.00 0.00 0.00 3.95
352 356 3.976902 GACGGTGGGAGCGGTTACG 62.977 68.421 0.00 0.00 44.33 3.18
358 362 3.723235 CTCCATGACGGTGGGAGCG 62.723 68.421 0.00 0.00 41.53 5.03
416 420 4.695928 GGGGATTAAAGGCGAGATATTGTC 59.304 45.833 0.00 0.00 0.00 3.18
417 421 4.351111 AGGGGATTAAAGGCGAGATATTGT 59.649 41.667 0.00 0.00 0.00 2.71
418 422 4.697352 CAGGGGATTAAAGGCGAGATATTG 59.303 45.833 0.00 0.00 0.00 1.90
429 434 7.281774 CGGATAATCATCATCAGGGGATTAAAG 59.718 40.741 0.00 0.00 36.25 1.85
446 451 4.946772 TGATTTTCTTGCCACGGATAATCA 59.053 37.500 7.88 7.88 37.47 2.57
453 462 4.701956 AGTATTGATTTTCTTGCCACGG 57.298 40.909 0.00 0.00 0.00 4.94
454 463 7.967854 TGAAATAGTATTGATTTTCTTGCCACG 59.032 33.333 0.00 0.00 0.00 4.94
455 464 9.807649 ATGAAATAGTATTGATTTTCTTGCCAC 57.192 29.630 0.00 0.00 0.00 5.01
462 471 9.173939 CGGCAAGATGAAATAGTATTGATTTTC 57.826 33.333 0.00 0.00 0.00 2.29
473 488 9.612620 GGAAATTAATACGGCAAGATGAAATAG 57.387 33.333 0.00 0.00 0.00 1.73
476 491 7.639113 AGGAAATTAATACGGCAAGATGAAA 57.361 32.000 0.00 0.00 0.00 2.69
502 520 5.583495 ACTCGCATCAATGAACTAGAGTAC 58.417 41.667 10.59 0.00 36.15 2.73
506 524 4.433615 GGAACTCGCATCAATGAACTAGA 58.566 43.478 0.00 0.00 0.00 2.43
507 525 3.243877 CGGAACTCGCATCAATGAACTAG 59.756 47.826 0.00 0.00 0.00 2.57
513 531 1.078709 ACACGGAACTCGCATCAATG 58.921 50.000 0.00 0.00 43.89 2.82
527 545 5.008217 TCAATTAAACTGACCTGAAACACGG 59.992 40.000 0.00 0.00 0.00 4.94
536 554 5.422214 ACTCGGATCAATTAAACTGACCT 57.578 39.130 0.00 0.00 0.00 3.85
566 584 3.365265 GCTGCGTTTGGGTCCAGG 61.365 66.667 0.00 0.00 0.00 4.45
567 585 2.281761 AGCTGCGTTTGGGTCCAG 60.282 61.111 0.00 0.00 0.00 3.86
676 697 1.087501 GCTTTCCAAGTCCATCCGAC 58.912 55.000 0.00 0.00 42.32 4.79
678 699 1.089920 CTGCTTTCCAAGTCCATCCG 58.910 55.000 0.00 0.00 0.00 4.18
685 706 1.882623 GCTACAAGCTGCTTTCCAAGT 59.117 47.619 13.10 9.69 38.45 3.16
696 717 4.096984 GGAATAATGCAACTGCTACAAGCT 59.903 41.667 2.95 0.00 42.97 3.74
699 720 5.009631 AGTGGAATAATGCAACTGCTACAA 58.990 37.500 2.95 0.00 42.66 2.41
702 723 5.123820 GTGAAGTGGAATAATGCAACTGCTA 59.876 40.000 2.95 0.00 42.66 3.49
724 745 0.322546 GGAAAGGGTGGCCAGTAGTG 60.323 60.000 5.11 0.00 0.00 2.74
726 747 0.625849 ATGGAAAGGGTGGCCAGTAG 59.374 55.000 5.11 0.00 34.74 2.57
744 765 2.991250 AGGCTACTGCGAAAATGACAT 58.009 42.857 0.00 0.00 40.82 3.06
776 797 3.127376 TGTGATCATGTGCTTTGGAATCG 59.873 43.478 0.00 0.00 0.00 3.34
786 807 4.194640 ACTGATAGGTTGTGATCATGTGC 58.805 43.478 0.00 0.00 31.81 4.57
793 814 8.918202 TCAAAAGTAAACTGATAGGTTGTGAT 57.082 30.769 0.00 0.00 0.00 3.06
796 817 9.574516 AATCTCAAAAGTAAACTGATAGGTTGT 57.425 29.630 0.00 0.00 0.00 3.32
828 849 9.859152 TCCATGTGGAATTTGAATATACATACA 57.141 29.630 0.00 0.00 42.18 2.29
831 852 9.425248 AACTCCATGTGGAATTTGAATATACAT 57.575 29.630 2.97 0.00 44.91 2.29
841 862 4.529377 AGATGCAAACTCCATGTGGAATTT 59.471 37.500 2.83 2.83 43.57 1.82
843 864 3.705051 AGATGCAAACTCCATGTGGAAT 58.295 40.909 2.97 0.00 44.91 3.01
845 866 2.885135 AGATGCAAACTCCATGTGGA 57.115 45.000 1.17 1.17 43.08 4.02
916 938 5.998454 AATCATAGCAGAACAAGAATCCG 57.002 39.130 0.00 0.00 0.00 4.18
939 961 6.659242 CAGTTGGAAGTTATGGAACCTGTAAT 59.341 38.462 0.00 0.00 36.08 1.89
959 981 2.624838 AGGCCAACTCAATCAACAGTTG 59.375 45.455 5.01 6.99 46.19 3.16
960 982 2.949447 AGGCCAACTCAATCAACAGTT 58.051 42.857 5.01 0.00 32.87 3.16
961 983 2.664402 AGGCCAACTCAATCAACAGT 57.336 45.000 5.01 0.00 0.00 3.55
963 985 4.365514 TTCTAGGCCAACTCAATCAACA 57.634 40.909 5.01 0.00 0.00 3.33
1161 1183 4.811557 GCTGGACTCACAAATCTACCATAC 59.188 45.833 0.00 0.00 0.00 2.39
1162 1184 4.716784 AGCTGGACTCACAAATCTACCATA 59.283 41.667 0.00 0.00 0.00 2.74
1167 1189 3.306989 CCACAGCTGGACTCACAAATCTA 60.307 47.826 19.93 0.00 40.55 1.98
1219 1241 3.261981 ACCTTTAATCGAATCAGCCGT 57.738 42.857 0.00 0.00 0.00 5.68
1244 1266 8.987890 GTTCCATGCATAAAAATGTAACAAAGT 58.012 29.630 0.00 0.00 0.00 2.66
1245 1267 8.442384 GGTTCCATGCATAAAAATGTAACAAAG 58.558 33.333 0.00 0.00 0.00 2.77
1247 1269 7.675062 AGGTTCCATGCATAAAAATGTAACAA 58.325 30.769 0.00 0.00 0.00 2.83
1265 1288 6.951198 TCCAGCAGAAAATATAAAAGGTTCCA 59.049 34.615 0.00 0.00 0.00 3.53
1267 1290 7.484140 CCTCCAGCAGAAAATATAAAAGGTTC 58.516 38.462 0.00 0.00 0.00 3.62
1304 1334 5.295540 GGAACATCTGAGGAAGTAATCAAGC 59.704 44.000 0.00 0.00 0.00 4.01
1341 1371 7.014038 GCAATTCTCTTCTCATATTCCACCATT 59.986 37.037 0.00 0.00 0.00 3.16
1426 1456 6.013984 ACTCAAGGAAATCATGCAGGAAAAAT 60.014 34.615 4.62 0.00 0.00 1.82
1433 1463 4.778534 AACACTCAAGGAAATCATGCAG 57.221 40.909 0.00 0.00 0.00 4.41
1463 1493 9.145865 GTCAATTGGTAAAAGTTCAGAAAAACA 57.854 29.630 5.42 0.00 0.00 2.83
1464 1494 8.318167 CGTCAATTGGTAAAAGTTCAGAAAAAC 58.682 33.333 5.42 0.00 0.00 2.43
1467 1497 5.974751 GCGTCAATTGGTAAAAGTTCAGAAA 59.025 36.000 5.42 0.00 0.00 2.52
1603 1633 8.454106 ACTATGTTAAGTAGCTGCTTTTGAATG 58.546 33.333 22.51 11.41 0.00 2.67
1607 1637 7.905493 GCTTACTATGTTAAGTAGCTGCTTTTG 59.095 37.037 22.51 7.96 33.62 2.44
1608 1638 7.606456 TGCTTACTATGTTAAGTAGCTGCTTTT 59.394 33.333 22.51 5.90 33.62 2.27
1616 1646 5.758784 GCCCCTTGCTTACTATGTTAAGTAG 59.241 44.000 0.00 0.00 33.62 2.57
1617 1647 5.677567 GCCCCTTGCTTACTATGTTAAGTA 58.322 41.667 0.00 0.00 36.87 2.24
1639 1669 5.760743 GGGAACTTAGGATAACTCAATCAGC 59.239 44.000 0.00 0.00 0.00 4.26
1645 1675 4.226620 GGGTTGGGAACTTAGGATAACTCA 59.773 45.833 0.00 0.00 0.00 3.41
1646 1676 4.473922 AGGGTTGGGAACTTAGGATAACTC 59.526 45.833 0.00 0.00 0.00 3.01
1647 1677 4.445564 AGGGTTGGGAACTTAGGATAACT 58.554 43.478 0.00 0.00 0.00 2.24
1648 1678 4.857130 AGGGTTGGGAACTTAGGATAAC 57.143 45.455 0.00 0.00 0.00 1.89
1649 1679 5.427481 CACTAGGGTTGGGAACTTAGGATAA 59.573 44.000 0.00 0.00 0.00 1.75
1651 1681 3.780850 CACTAGGGTTGGGAACTTAGGAT 59.219 47.826 0.00 0.00 0.00 3.24
1652 1682 3.178865 CACTAGGGTTGGGAACTTAGGA 58.821 50.000 0.00 0.00 0.00 2.94
1653 1683 2.355818 GCACTAGGGTTGGGAACTTAGG 60.356 54.545 0.00 0.00 0.00 2.69
1654 1684 2.572104 AGCACTAGGGTTGGGAACTTAG 59.428 50.000 0.00 0.00 0.00 2.18
1655 1685 2.627933 AGCACTAGGGTTGGGAACTTA 58.372 47.619 0.00 0.00 0.00 2.24
1656 1686 1.446016 AGCACTAGGGTTGGGAACTT 58.554 50.000 0.00 0.00 0.00 2.66
1657 1687 1.446016 AAGCACTAGGGTTGGGAACT 58.554 50.000 0.00 0.00 35.50 3.01
1658 1688 2.160205 GAAAGCACTAGGGTTGGGAAC 58.840 52.381 0.00 0.00 37.28 3.62
1659 1689 2.062636 AGAAAGCACTAGGGTTGGGAA 58.937 47.619 0.00 0.00 37.28 3.97
1663 1693 6.575162 ATTAAACAGAAAGCACTAGGGTTG 57.425 37.500 0.00 0.00 37.28 3.77
1674 1704 7.772757 AGCCATCTTCTCCTATTAAACAGAAAG 59.227 37.037 0.00 0.00 0.00 2.62
1686 1716 4.411927 GAGACCATAGCCATCTTCTCCTA 58.588 47.826 0.00 0.00 0.00 2.94
1713 1743 2.384828 TCGGTAGAAGGCTGAGCAATA 58.615 47.619 6.82 0.00 0.00 1.90
1732 1762 7.283329 AGATACAATCCCTTTACTGGTGAATC 58.717 38.462 0.00 0.00 0.00 2.52
1734 1764 6.636454 AGATACAATCCCTTTACTGGTGAA 57.364 37.500 0.00 0.00 0.00 3.18
1800 1830 7.466455 CGATTTGCTTACAGTTGCTCATAGAAT 60.466 37.037 0.00 0.00 0.00 2.40
1848 1878 6.012658 TGGTTATCTTAAAGCAGCACAAAG 57.987 37.500 0.00 0.00 33.24 2.77
1897 1927 9.319143 GAATATATCTGGTATATGTTCAGCACC 57.681 37.037 1.33 0.00 36.37 5.01
1936 1967 7.445945 AGAGCACTAAATGTACTTCTGAACTT 58.554 34.615 0.00 0.00 0.00 2.66
2348 2392 5.804771 GCAGAAGAACCAAAGGAAGATAGGT 60.805 44.000 0.00 0.00 0.00 3.08
2369 2413 7.167635 CGTTGTCTAGTTAATACCACATAGCAG 59.832 40.741 0.00 0.00 0.00 4.24
2395 2439 6.756542 GGGAAAATATGTGCAAGTACCAAATC 59.243 38.462 0.00 0.00 0.00 2.17
2397 2441 5.777732 AGGGAAAATATGTGCAAGTACCAAA 59.222 36.000 0.00 0.00 0.00 3.28
2555 2599 5.671742 TTGATGCATATGTCATAACCACG 57.328 39.130 0.00 0.00 0.00 4.94
2566 2611 7.731882 AGACTGAAGAAGATTGATGCATATG 57.268 36.000 0.00 0.00 0.00 1.78
2576 2621 8.821686 TGAAGAGATCTAGACTGAAGAAGATT 57.178 34.615 0.00 0.00 0.00 2.40
2766 2811 7.391554 AGTTACCTGTAAAGTATGTGTCGAGTA 59.608 37.037 0.00 0.00 0.00 2.59
2768 2813 6.527023 CAGTTACCTGTAAAGTATGTGTCGAG 59.473 42.308 0.00 0.00 33.80 4.04
2769 2814 6.207221 TCAGTTACCTGTAAAGTATGTGTCGA 59.793 38.462 0.00 0.00 39.82 4.20
2773 2818 8.443160 CAACATCAGTTACCTGTAAAGTATGTG 58.557 37.037 10.58 2.41 39.82 3.21
2917 2964 9.199982 CAAAAGAATGAATGCAAAATACTGAGT 57.800 29.630 0.00 0.00 0.00 3.41
3116 3163 8.218338 TGCAACAATCCACAAAAATTAACATT 57.782 26.923 0.00 0.00 0.00 2.71
3234 3282 4.588528 TCATGGAAGGGAAAACTGGAAAAG 59.411 41.667 0.00 0.00 0.00 2.27
3252 3300 6.485648 TGCTCATAAGATTGAAGATGTCATGG 59.514 38.462 0.00 0.00 35.70 3.66
3308 3356 6.989759 TCTGTTTAAGAACTGTACTGCATTCA 59.010 34.615 0.00 0.00 36.70 2.57
3350 3398 2.862597 AGGAGTAGGTTCCTCATCTCCT 59.137 50.000 22.05 22.05 44.33 3.69
3646 3723 3.067461 TGCACAGTAACATTTTGGTGTCC 59.933 43.478 0.00 0.00 0.00 4.02
3662 3739 2.289002 GGTGTGAAACTTCTCTGCACAG 59.711 50.000 0.00 0.00 39.80 3.66
3798 3875 2.421424 CACAAGGCTAAGGCAAGATCAC 59.579 50.000 0.00 0.00 40.87 3.06
3906 3992 6.049149 TGCTAACATGAGAAAGTATACTGCC 58.951 40.000 6.06 1.43 0.00 4.85
3913 3999 9.897744 CTTTCAAAATGCTAACATGAGAAAGTA 57.102 29.630 0.00 0.00 40.24 2.24
3914 4000 8.632679 TCTTTCAAAATGCTAACATGAGAAAGT 58.367 29.630 18.05 0.00 42.49 2.66
3964 4059 5.301805 TGTCTGCCGTCTCATATAATCAGAA 59.698 40.000 0.00 0.00 32.08 3.02
3965 4060 4.827284 TGTCTGCCGTCTCATATAATCAGA 59.173 41.667 0.00 0.00 0.00 3.27
3968 4063 5.127693 ACTGTCTGCCGTCTCATATAATC 57.872 43.478 0.00 0.00 0.00 1.75
3976 4071 2.423892 TGATTCTACTGTCTGCCGTCTC 59.576 50.000 0.00 0.00 0.00 3.36
3978 4073 2.164624 ACTGATTCTACTGTCTGCCGTC 59.835 50.000 0.00 0.00 0.00 4.79
3980 4075 2.949451 ACTGATTCTACTGTCTGCCG 57.051 50.000 0.00 0.00 0.00 5.69
3983 4078 4.993584 AGTGCAAACTGATTCTACTGTCTG 59.006 41.667 0.00 0.00 0.00 3.51
3986 4081 5.368145 TCAAGTGCAAACTGATTCTACTGT 58.632 37.500 0.00 0.00 0.00 3.55
4012 4107 4.621068 TGCCTATCAGCAGAAAATTTCG 57.379 40.909 0.00 0.00 38.00 3.46
4023 4145 9.099454 GGTAATACAGTATTTATGCCTATCAGC 57.901 37.037 11.16 0.00 0.00 4.26
4024 4146 9.302345 CGGTAATACAGTATTTATGCCTATCAG 57.698 37.037 11.16 0.00 0.00 2.90
4025 4147 8.255206 CCGGTAATACAGTATTTATGCCTATCA 58.745 37.037 11.16 0.00 0.00 2.15
4026 4148 7.709613 CCCGGTAATACAGTATTTATGCCTATC 59.290 40.741 11.16 0.00 0.00 2.08
4027 4149 7.400915 TCCCGGTAATACAGTATTTATGCCTAT 59.599 37.037 11.16 0.00 0.00 2.57
4028 4150 6.725369 TCCCGGTAATACAGTATTTATGCCTA 59.275 38.462 11.16 0.00 0.00 3.93
4029 4151 5.544948 TCCCGGTAATACAGTATTTATGCCT 59.455 40.000 11.16 0.00 0.00 4.75
4030 4152 5.640783 GTCCCGGTAATACAGTATTTATGCC 59.359 44.000 11.16 8.05 0.00 4.40
4031 4153 6.146673 GTGTCCCGGTAATACAGTATTTATGC 59.853 42.308 11.16 0.88 0.00 3.14
4032 4154 7.211573 TGTGTCCCGGTAATACAGTATTTATG 58.788 38.462 11.16 2.04 0.00 1.90
4033 4155 7.364149 TGTGTCCCGGTAATACAGTATTTAT 57.636 36.000 11.16 0.00 0.00 1.40
4034 4156 6.788598 TGTGTCCCGGTAATACAGTATTTA 57.211 37.500 11.16 0.00 0.00 1.40
4035 4157 5.680594 TGTGTCCCGGTAATACAGTATTT 57.319 39.130 11.16 0.00 0.00 1.40
4036 4158 5.680594 TTGTGTCCCGGTAATACAGTATT 57.319 39.130 10.71 10.71 0.00 1.89
4037 4159 5.422970 TCTTTGTGTCCCGGTAATACAGTAT 59.577 40.000 0.00 0.00 0.00 2.12
4038 4160 4.771577 TCTTTGTGTCCCGGTAATACAGTA 59.228 41.667 0.00 0.00 0.00 2.74
4039 4161 3.579586 TCTTTGTGTCCCGGTAATACAGT 59.420 43.478 0.00 0.00 0.00 3.55
4040 4162 4.196626 TCTTTGTGTCCCGGTAATACAG 57.803 45.455 0.00 0.00 0.00 2.74
4041 4163 4.620589 TTCTTTGTGTCCCGGTAATACA 57.379 40.909 0.00 0.00 0.00 2.29
4042 4164 5.425630 AGATTCTTTGTGTCCCGGTAATAC 58.574 41.667 0.00 0.00 0.00 1.89
4043 4165 5.687166 AGATTCTTTGTGTCCCGGTAATA 57.313 39.130 0.00 0.00 0.00 0.98
4044 4166 4.569719 AGATTCTTTGTGTCCCGGTAAT 57.430 40.909 0.00 0.00 0.00 1.89
4045 4167 4.069304 CAAGATTCTTTGTGTCCCGGTAA 58.931 43.478 0.00 0.00 0.00 2.85
4046 4168 3.071892 ACAAGATTCTTTGTGTCCCGGTA 59.928 43.478 0.00 0.00 39.68 4.02
4047 4169 2.158667 ACAAGATTCTTTGTGTCCCGGT 60.159 45.455 0.00 0.00 39.68 5.28
4048 4170 2.484264 GACAAGATTCTTTGTGTCCCGG 59.516 50.000 0.00 0.00 41.15 5.73
4049 4171 3.403038 AGACAAGATTCTTTGTGTCCCG 58.597 45.455 11.59 0.00 41.15 5.14
4050 4172 4.453819 CAGAGACAAGATTCTTTGTGTCCC 59.546 45.833 11.59 2.89 46.68 4.46
4051 4173 5.178438 GTCAGAGACAAGATTCTTTGTGTCC 59.822 44.000 11.59 5.76 46.68 4.02
4052 4174 5.107683 CGTCAGAGACAAGATTCTTTGTGTC 60.108 44.000 8.36 8.36 46.16 3.67
4053 4175 4.747108 CGTCAGAGACAAGATTCTTTGTGT 59.253 41.667 0.00 0.00 41.15 3.72
4090 4212 4.181578 CCTTGTTCTCGTACATAACCTGG 58.818 47.826 0.00 0.00 0.00 4.45
4216 4338 3.195825 AGAGATCGGGATCGTCACTTTTT 59.804 43.478 3.19 0.00 42.48 1.94
4249 4371 2.632377 TCTTTGGCAAATCCTAGCTCG 58.368 47.619 13.89 0.00 35.26 5.03
4303 4425 3.902881 AAGAGCTGACATAACCTCCTG 57.097 47.619 0.00 0.00 0.00 3.86
4314 4440 8.541133 AACTGAAGTTAAGAATAAGAGCTGAC 57.459 34.615 0.00 0.00 36.32 3.51
4329 4455 7.043565 ACAGGTTTAAGACGAAACTGAAGTTA 58.956 34.615 8.71 0.00 38.97 2.24
4369 4495 3.376859 TCAACCTGTAACAACACAAGCAG 59.623 43.478 0.00 0.00 0.00 4.24
4444 4571 1.200519 TATCTAAAGCGTGCAGGGGT 58.799 50.000 8.72 0.00 0.00 4.95
4457 4584 2.683968 GACATCGCCGCCATTATCTAA 58.316 47.619 0.00 0.00 0.00 2.10
4558 4685 7.825709 ACATTTCTCCCATTCCTCCATATAAA 58.174 34.615 0.00 0.00 0.00 1.40
4586 4714 4.084287 ACATGCATCACTGACAGGAAAAT 58.916 39.130 7.51 0.00 0.00 1.82
4650 4780 4.675510 ACAAGTGTGACATTTTTGCAGAG 58.324 39.130 7.15 0.00 0.00 3.35
4796 4930 5.050499 GCCTACGAGTTTCATGATTCATCTG 60.050 44.000 0.00 0.00 0.00 2.90
4814 4948 4.096532 TGATTCTACAAGAGTCTGCCTACG 59.903 45.833 0.00 0.00 32.82 3.51
4831 4965 7.040478 TGCAGTATTTGTTAGCTTGTTGATTCT 60.040 33.333 0.00 0.00 0.00 2.40
4856 4990 1.552337 AGTGGTGGAGCTGACATAGTG 59.448 52.381 0.00 0.00 0.00 2.74
4862 4996 0.321122 CAAGGAGTGGTGGAGCTGAC 60.321 60.000 0.00 0.00 0.00 3.51
4902 5036 4.955811 TTCTTTGTAACTCTCTGCCTCA 57.044 40.909 0.00 0.00 0.00 3.86
4943 5077 5.127845 TCTGTTGATTTACACAGCCCAAAAA 59.872 36.000 0.00 0.00 32.16 1.94
4944 5078 4.646945 TCTGTTGATTTACACAGCCCAAAA 59.353 37.500 0.00 0.00 32.16 2.44
4948 5082 3.428045 GCATCTGTTGATTTACACAGCCC 60.428 47.826 0.00 0.00 32.16 5.19
5320 5476 3.731652 TGTTCTGGGATTGTGCTTTTG 57.268 42.857 0.00 0.00 0.00 2.44
5325 5481 2.562298 TCCATTTGTTCTGGGATTGTGC 59.438 45.455 0.00 0.00 34.36 4.57
5326 5482 4.081406 TCTCCATTTGTTCTGGGATTGTG 58.919 43.478 0.00 0.00 34.36 3.33
5328 5484 3.129988 GCTCTCCATTTGTTCTGGGATTG 59.870 47.826 0.00 0.00 34.36 2.67
5330 5486 2.309755 TGCTCTCCATTTGTTCTGGGAT 59.690 45.455 0.00 0.00 34.36 3.85
5343 5499 2.435805 ACACTGAAGAAACTGCTCTCCA 59.564 45.455 0.00 0.00 0.00 3.86
5349 5505 3.695816 GTTCCAACACTGAAGAAACTGC 58.304 45.455 0.00 0.00 0.00 4.40
5370 5526 2.098280 CCTACCTCTGTGAGATGTGTCG 59.902 54.545 0.00 0.00 0.00 4.35
5371 5527 3.357203 TCCTACCTCTGTGAGATGTGTC 58.643 50.000 0.00 0.00 0.00 3.67
5372 5528 3.458044 TCCTACCTCTGTGAGATGTGT 57.542 47.619 0.00 0.00 0.00 3.72
5373 5529 4.522405 CCTATCCTACCTCTGTGAGATGTG 59.478 50.000 0.00 0.00 0.00 3.21
5375 5531 4.991776 TCCTATCCTACCTCTGTGAGATG 58.008 47.826 0.00 0.00 0.00 2.90
5376 5532 4.044065 CCTCCTATCCTACCTCTGTGAGAT 59.956 50.000 0.00 0.00 0.00 2.75
5377 5533 3.396276 CCTCCTATCCTACCTCTGTGAGA 59.604 52.174 0.00 0.00 0.00 3.27
5378 5534 3.396276 TCCTCCTATCCTACCTCTGTGAG 59.604 52.174 0.00 0.00 0.00 3.51
5379 5535 3.404292 TCCTCCTATCCTACCTCTGTGA 58.596 50.000 0.00 0.00 0.00 3.58
5380 5536 3.885976 TCCTCCTATCCTACCTCTGTG 57.114 52.381 0.00 0.00 0.00 3.66
5381 5537 6.547396 TTATTCCTCCTATCCTACCTCTGT 57.453 41.667 0.00 0.00 0.00 3.41
5407 5563 2.698274 GGAACCTGCTCCAAAGGAAAAA 59.302 45.455 0.00 0.00 38.27 1.94
5434 5598 4.363138 CTGCTGCTGTATGATCGAGTTAA 58.637 43.478 0.00 0.00 0.00 2.01
5443 5607 0.036483 TTTCGGCTGCTGCTGTATGA 60.036 50.000 22.05 2.01 45.38 2.15
5459 5623 9.286946 CAATGCTCAGATACAAAATCTTCTTTC 57.713 33.333 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.