Multiple sequence alignment - TraesCS1B01G392000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G392000 chr1B 100.000 3236 0 0 1 3236 624969835 624973070 0.000000e+00 5976.0
1 TraesCS1B01G392000 chr1B 88.823 1521 123 24 843 2327 625082429 625083938 0.000000e+00 1823.0
2 TraesCS1B01G392000 chr1B 88.501 1348 116 25 849 2165 625145061 625146400 0.000000e+00 1594.0
3 TraesCS1B01G392000 chr1B 100.000 196 0 0 2340 2535 624977397 624977592 2.370000e-96 363.0
4 TraesCS1B01G392000 chr1B 80.711 394 36 14 1956 2319 625051985 625052368 1.480000e-68 270.0
5 TraesCS1B01G392000 chr1B 89.516 124 11 1 32 153 625143371 625143494 4.320000e-34 156.0
6 TraesCS1B01G392000 chr1B 92.500 80 4 1 75 152 625046172 625046251 2.640000e-21 113.0
7 TraesCS1B01G392000 chr1B 85.135 74 1 4 4 76 625046025 625046089 2.080000e-07 67.6
8 TraesCS1B01G392000 chr1B 100.000 31 0 0 2167 2197 625087742 625087772 1.250000e-04 58.4
9 TraesCS1B01G392000 chr1B 100.000 29 0 0 506 534 624970665 624970693 2.000000e-03 54.7
10 TraesCS1B01G392000 chr1D 88.838 1523 110 34 843 2329 454458588 454457090 0.000000e+00 1816.0
11 TraesCS1B01G392000 chr1D 88.492 1512 125 25 833 2305 454768921 454770422 0.000000e+00 1783.0
12 TraesCS1B01G392000 chr1D 87.198 1531 115 35 849 2330 454493963 454492465 0.000000e+00 1666.0
13 TraesCS1B01G392000 chr1D 88.102 1370 100 30 849 2165 454812581 454813940 0.000000e+00 1568.0
14 TraesCS1B01G392000 chr1D 93.015 272 17 1 32 301 454494852 454494581 2.340000e-106 396.0
15 TraesCS1B01G392000 chr1D 82.848 309 32 13 32 321 454459283 454458977 1.150000e-64 257.0
16 TraesCS1B01G392000 chr1D 86.667 90 6 5 2169 2255 454487544 454487458 9.560000e-16 95.3
17 TraesCS1B01G392000 chr1A 89.607 1424 104 20 936 2327 548733306 548734717 0.000000e+00 1770.0
18 TraesCS1B01G392000 chr1A 88.832 1370 109 19 962 2304 548772380 548773732 0.000000e+00 1642.0
19 TraesCS1B01G392000 chr1A 88.922 1354 102 25 849 2165 548789166 548790508 0.000000e+00 1626.0
20 TraesCS1B01G392000 chr1A 86.867 731 83 13 2377 3106 97187314 97186596 0.000000e+00 806.0
21 TraesCS1B01G392000 chr1A 92.264 349 23 3 32 376 548732601 548732949 2.900000e-135 492.0
22 TraesCS1B01G392000 chr1A 87.218 133 8 5 2167 2299 548739491 548739614 3.370000e-30 143.0
23 TraesCS1B01G392000 chr1A 80.916 131 16 7 2150 2279 548777761 548777883 9.560000e-16 95.3
24 TraesCS1B01G392000 chr1A 100.000 28 0 0 2169 2196 548715395 548715422 6.000000e-03 52.8
25 TraesCS1B01G392000 chr2A 96.264 910 31 2 2330 3236 723193440 723192531 0.000000e+00 1489.0
26 TraesCS1B01G392000 chr5D 93.726 781 23 10 2330 3107 393794179 393794936 0.000000e+00 1147.0
27 TraesCS1B01G392000 chr5D 92.949 312 16 5 526 832 530843727 530844037 1.770000e-122 449.0
28 TraesCS1B01G392000 chr5D 92.880 309 15 5 526 829 432946828 432946522 2.960000e-120 442.0
29 TraesCS1B01G392000 chr5D 94.231 208 9 2 2330 2534 393799421 393799628 6.740000e-82 315.0
30 TraesCS1B01G392000 chr6B 89.562 776 77 4 2461 3236 32817840 32817069 0.000000e+00 981.0
31 TraesCS1B01G392000 chr5A 89.304 776 79 4 2461 3236 597322406 597323177 0.000000e+00 970.0
32 TraesCS1B01G392000 chr7D 89.046 776 81 4 2461 3236 598046132 598046903 0.000000e+00 959.0
33 TraesCS1B01G392000 chr3A 87.007 862 98 14 2377 3236 686898373 686897524 0.000000e+00 959.0
34 TraesCS1B01G392000 chr2B 86.581 857 99 14 2385 3236 55497884 55498729 0.000000e+00 931.0
35 TraesCS1B01G392000 chr2B 94.237 295 13 3 538 829 776080074 776079781 6.370000e-122 448.0
36 TraesCS1B01G392000 chr7A 86.580 842 98 12 2396 3236 7003865 7003038 0.000000e+00 915.0
37 TraesCS1B01G392000 chr7A 94.481 308 12 4 526 828 597507155 597507462 1.360000e-128 470.0
38 TraesCS1B01G392000 chr6A 86.284 853 102 14 2386 3236 58817795 58818634 0.000000e+00 913.0
39 TraesCS1B01G392000 chr6A 93.204 309 15 5 526 829 79007929 79007622 1.770000e-122 449.0
40 TraesCS1B01G392000 chr5B 93.750 304 14 4 530 828 638370112 638370415 4.920000e-123 451.0
41 TraesCS1B01G392000 chr5B 93.174 293 16 3 538 827 216414470 216414761 8.300000e-116 427.0
42 TraesCS1B01G392000 chr5B 92.905 296 18 2 538 830 396517845 396517550 8.300000e-116 427.0
43 TraesCS1B01G392000 chr4A 91.262 309 21 5 526 829 166329045 166329352 1.800000e-112 416.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G392000 chr1B 624969835 624973070 3235 False 3015.35 5976 100.0000 1 3236 2 chr1B.!!$F3 3235
1 TraesCS1B01G392000 chr1B 625082429 625087772 5343 False 940.70 1823 94.4115 843 2327 2 chr1B.!!$F5 1484
2 TraesCS1B01G392000 chr1B 625143371 625146400 3029 False 875.00 1594 89.0085 32 2165 2 chr1B.!!$F6 2133
3 TraesCS1B01G392000 chr1D 454768921 454770422 1501 False 1783.00 1783 88.4920 833 2305 1 chr1D.!!$F1 1472
4 TraesCS1B01G392000 chr1D 454812581 454813940 1359 False 1568.00 1568 88.1020 849 2165 1 chr1D.!!$F2 1316
5 TraesCS1B01G392000 chr1D 454457090 454459283 2193 True 1036.50 1816 85.8430 32 2329 2 chr1D.!!$R2 2297
6 TraesCS1B01G392000 chr1D 454492465 454494852 2387 True 1031.00 1666 90.1065 32 2330 2 chr1D.!!$R3 2298
7 TraesCS1B01G392000 chr1A 548772380 548773732 1352 False 1642.00 1642 88.8320 962 2304 1 chr1A.!!$F3 1342
8 TraesCS1B01G392000 chr1A 548789166 548790508 1342 False 1626.00 1626 88.9220 849 2165 1 chr1A.!!$F5 1316
9 TraesCS1B01G392000 chr1A 548732601 548734717 2116 False 1131.00 1770 90.9355 32 2327 2 chr1A.!!$F6 2295
10 TraesCS1B01G392000 chr1A 97186596 97187314 718 True 806.00 806 86.8670 2377 3106 1 chr1A.!!$R1 729
11 TraesCS1B01G392000 chr2A 723192531 723193440 909 True 1489.00 1489 96.2640 2330 3236 1 chr2A.!!$R1 906
12 TraesCS1B01G392000 chr5D 393794179 393794936 757 False 1147.00 1147 93.7260 2330 3107 1 chr5D.!!$F1 777
13 TraesCS1B01G392000 chr6B 32817069 32817840 771 True 981.00 981 89.5620 2461 3236 1 chr6B.!!$R1 775
14 TraesCS1B01G392000 chr5A 597322406 597323177 771 False 970.00 970 89.3040 2461 3236 1 chr5A.!!$F1 775
15 TraesCS1B01G392000 chr7D 598046132 598046903 771 False 959.00 959 89.0460 2461 3236 1 chr7D.!!$F1 775
16 TraesCS1B01G392000 chr3A 686897524 686898373 849 True 959.00 959 87.0070 2377 3236 1 chr3A.!!$R1 859
17 TraesCS1B01G392000 chr2B 55497884 55498729 845 False 931.00 931 86.5810 2385 3236 1 chr2B.!!$F1 851
18 TraesCS1B01G392000 chr7A 7003038 7003865 827 True 915.00 915 86.5800 2396 3236 1 chr7A.!!$R1 840
19 TraesCS1B01G392000 chr6A 58817795 58818634 839 False 913.00 913 86.2840 2386 3236 1 chr6A.!!$F1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 2164 0.254747 TAAGTTGATCCAAGGCCGGG 59.745 55.000 2.18 10.03 0.0 5.73 F
593 2175 0.264955 AAGGCCGGGAAGAGGATAGA 59.735 55.000 2.18 0.00 0.0 1.98 F
765 2347 0.315251 GGCCCTGAAGTTGCTTTGTC 59.685 55.000 0.00 0.00 0.0 3.18 F
933 2568 1.075374 CCAACCTCCTCCATTTCCACA 59.925 52.381 0.00 0.00 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 3450 0.178941 AGTACCGGAACCTCCACAGT 60.179 55.0 9.46 0.0 35.91 3.55 R
1765 3451 0.531200 GAGTACCGGAACCTCCACAG 59.469 60.0 9.46 0.0 35.91 3.66 R
1863 3549 0.804933 GGTAGAACACGACGGCATCC 60.805 60.0 0.00 0.0 0.00 3.51 R
2387 4151 2.930405 AGTACTCTTCCCCTCTTCTCCT 59.070 50.0 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.222287 AGGAGTCAGGAGGAGATGC 57.778 57.895 0.00 0.00 0.00 3.91
19 20 0.754957 AGGAGTCAGGAGGAGATGCG 60.755 60.000 0.00 0.00 0.00 4.73
20 21 1.040339 GGAGTCAGGAGGAGATGCGT 61.040 60.000 0.00 0.00 0.00 5.24
21 22 0.820871 GAGTCAGGAGGAGATGCGTT 59.179 55.000 0.00 0.00 0.00 4.84
22 23 2.025155 GAGTCAGGAGGAGATGCGTTA 58.975 52.381 0.00 0.00 0.00 3.18
23 24 1.751924 AGTCAGGAGGAGATGCGTTAC 59.248 52.381 0.00 0.00 0.00 2.50
24 25 1.751924 GTCAGGAGGAGATGCGTTACT 59.248 52.381 0.00 0.00 0.00 2.24
25 26 2.166664 GTCAGGAGGAGATGCGTTACTT 59.833 50.000 0.00 0.00 0.00 2.24
26 27 2.166459 TCAGGAGGAGATGCGTTACTTG 59.834 50.000 0.00 0.00 0.00 3.16
27 28 1.482593 AGGAGGAGATGCGTTACTTGG 59.517 52.381 0.00 0.00 0.00 3.61
28 29 1.291132 GAGGAGATGCGTTACTTGGC 58.709 55.000 0.00 0.00 0.00 4.52
29 30 0.460284 AGGAGATGCGTTACTTGGCG 60.460 55.000 0.00 0.00 0.00 5.69
30 31 0.739813 GGAGATGCGTTACTTGGCGT 60.740 55.000 0.00 0.00 0.00 5.68
86 87 8.871686 ACAAAGTTAAAATTAGAAGGCAACAG 57.128 30.769 0.00 0.00 41.41 3.16
165 168 1.677633 GTAGCATGGCCAACGGGTT 60.678 57.895 10.96 0.02 36.17 4.11
167 170 2.130821 TAGCATGGCCAACGGGTTCA 62.131 55.000 10.96 0.00 36.17 3.18
210 232 3.219176 TCTTCTTCCATGGATGCCATC 57.781 47.619 17.06 0.00 43.15 3.51
221 243 6.660521 TCCATGGATGCCATCAAATATCTAAC 59.339 38.462 11.44 0.00 43.15 2.34
223 245 7.039574 CCATGGATGCCATCAAATATCTAACAA 60.040 37.037 5.56 0.00 43.15 2.83
467 2049 9.915629 ATATCGAACAATAGAATGTACTTCCTC 57.084 33.333 0.00 0.00 34.11 3.71
496 2078 7.714813 TCTCATGATATAAGATCGTTTTGCCAA 59.285 33.333 0.00 0.00 0.00 4.52
501 2083 0.598065 AGATCGTTTTGCCAACCAGC 59.402 50.000 0.00 0.00 0.00 4.85
527 2109 9.275398 CTAGCTTAGCTATACTACACTTACACT 57.725 37.037 14.78 0.00 40.54 3.55
529 2111 7.774157 AGCTTAGCTATACTACACTTACACTCA 59.226 37.037 4.30 0.00 36.99 3.41
530 2112 7.856894 GCTTAGCTATACTACACTTACACTCAC 59.143 40.741 0.00 0.00 0.00 3.51
531 2113 6.696441 AGCTATACTACACTTACACTCACC 57.304 41.667 0.00 0.00 0.00 4.02
533 2115 6.543100 AGCTATACTACACTTACACTCACCTC 59.457 42.308 0.00 0.00 0.00 3.85
534 2116 6.543100 GCTATACTACACTTACACTCACCTCT 59.457 42.308 0.00 0.00 0.00 3.69
535 2117 7.714377 GCTATACTACACTTACACTCACCTCTA 59.286 40.741 0.00 0.00 0.00 2.43
540 2122 8.904834 ACTACACTTACACTCACCTCTATATTG 58.095 37.037 0.00 0.00 0.00 1.90
541 2123 7.956328 ACACTTACACTCACCTCTATATTGA 57.044 36.000 0.00 0.00 0.00 2.57
542 2124 8.001881 ACACTTACACTCACCTCTATATTGAG 57.998 38.462 7.15 7.15 42.17 3.02
543 2125 7.834681 ACACTTACACTCACCTCTATATTGAGA 59.165 37.037 14.78 0.00 39.36 3.27
544 2126 8.855110 CACTTACACTCACCTCTATATTGAGAT 58.145 37.037 14.78 0.00 39.36 2.75
545 2127 8.855110 ACTTACACTCACCTCTATATTGAGATG 58.145 37.037 14.78 8.81 39.36 2.90
546 2128 6.662865 ACACTCACCTCTATATTGAGATGG 57.337 41.667 14.78 5.80 39.36 3.51
547 2129 6.377080 ACACTCACCTCTATATTGAGATGGA 58.623 40.000 14.78 8.39 39.36 3.41
549 2131 7.512058 ACACTCACCTCTATATTGAGATGGATT 59.488 37.037 14.78 2.49 39.36 3.01
550 2132 8.034215 CACTCACCTCTATATTGAGATGGATTC 58.966 40.741 14.78 0.00 39.36 2.52
551 2133 7.955185 ACTCACCTCTATATTGAGATGGATTCT 59.045 37.037 14.78 0.00 39.36 2.40
552 2134 9.473007 CTCACCTCTATATTGAGATGGATTCTA 57.527 37.037 14.78 0.00 39.36 2.10
553 2135 9.249053 TCACCTCTATATTGAGATGGATTCTAC 57.751 37.037 14.78 0.00 36.23 2.59
554 2136 9.029368 CACCTCTATATTGAGATGGATTCTACA 57.971 37.037 14.78 0.00 36.23 2.74
555 2137 9.253832 ACCTCTATATTGAGATGGATTCTACAG 57.746 37.037 14.78 0.00 36.23 2.74
556 2138 9.253832 CCTCTATATTGAGATGGATTCTACAGT 57.746 37.037 14.78 0.00 36.23 3.55
560 2142 5.426689 TTGAGATGGATTCTACAGTTGCT 57.573 39.130 0.00 0.00 33.74 3.91
561 2143 4.763073 TGAGATGGATTCTACAGTTGCTG 58.237 43.478 0.00 0.00 33.74 4.41
563 2145 5.171339 AGATGGATTCTACAGTTGCTGTT 57.829 39.130 7.11 0.00 42.59 3.16
565 2147 6.711277 AGATGGATTCTACAGTTGCTGTTAA 58.289 36.000 7.11 3.68 42.59 2.01
566 2148 6.820656 AGATGGATTCTACAGTTGCTGTTAAG 59.179 38.462 7.11 0.45 42.59 1.85
567 2149 5.865085 TGGATTCTACAGTTGCTGTTAAGT 58.135 37.500 7.11 0.00 42.59 2.24
568 2150 6.296026 TGGATTCTACAGTTGCTGTTAAGTT 58.704 36.000 7.11 0.00 42.59 2.66
569 2151 6.204688 TGGATTCTACAGTTGCTGTTAAGTTG 59.795 38.462 7.11 0.00 42.59 3.16
570 2152 6.426937 GGATTCTACAGTTGCTGTTAAGTTGA 59.573 38.462 7.11 0.00 42.59 3.18
571 2153 7.119846 GGATTCTACAGTTGCTGTTAAGTTGAT 59.880 37.037 7.11 0.00 42.59 2.57
574 2156 4.460263 ACAGTTGCTGTTAAGTTGATCCA 58.540 39.130 0.00 0.00 42.59 3.41
576 2158 5.009010 ACAGTTGCTGTTAAGTTGATCCAAG 59.991 40.000 0.00 0.00 42.59 3.61
577 2159 4.520492 AGTTGCTGTTAAGTTGATCCAAGG 59.480 41.667 0.00 0.00 0.00 3.61
579 2161 2.164422 GCTGTTAAGTTGATCCAAGGCC 59.836 50.000 0.00 0.00 0.00 5.19
581 2163 1.743394 GTTAAGTTGATCCAAGGCCGG 59.257 52.381 0.00 0.00 0.00 6.13
582 2164 0.254747 TAAGTTGATCCAAGGCCGGG 59.745 55.000 2.18 10.03 0.00 5.73
583 2165 1.497309 AAGTTGATCCAAGGCCGGGA 61.497 55.000 19.74 19.74 39.14 5.14
584 2166 1.001393 GTTGATCCAAGGCCGGGAA 60.001 57.895 21.05 5.18 38.09 3.97
585 2167 1.032114 GTTGATCCAAGGCCGGGAAG 61.032 60.000 21.05 0.00 38.09 3.46
586 2168 1.204786 TTGATCCAAGGCCGGGAAGA 61.205 55.000 21.05 9.40 38.09 2.87
587 2169 1.147153 GATCCAAGGCCGGGAAGAG 59.853 63.158 21.05 0.00 38.09 2.85
588 2170 2.330924 GATCCAAGGCCGGGAAGAGG 62.331 65.000 21.05 6.10 38.09 3.69
590 2172 2.378634 CCAAGGCCGGGAAGAGGAT 61.379 63.158 10.74 0.00 0.00 3.24
592 2174 0.394565 CAAGGCCGGGAAGAGGATAG 59.605 60.000 2.18 0.00 0.00 2.08
593 2175 0.264955 AAGGCCGGGAAGAGGATAGA 59.735 55.000 2.18 0.00 0.00 1.98
594 2176 0.489567 AGGCCGGGAAGAGGATAGAT 59.510 55.000 2.18 0.00 0.00 1.98
595 2177 0.899019 GGCCGGGAAGAGGATAGATC 59.101 60.000 2.18 0.00 0.00 2.75
596 2178 1.633774 GCCGGGAAGAGGATAGATCA 58.366 55.000 2.18 0.00 0.00 2.92
597 2179 1.971357 GCCGGGAAGAGGATAGATCAA 59.029 52.381 2.18 0.00 0.00 2.57
598 2180 2.569404 GCCGGGAAGAGGATAGATCAAT 59.431 50.000 2.18 0.00 0.00 2.57
599 2181 3.368948 GCCGGGAAGAGGATAGATCAATC 60.369 52.174 2.18 0.00 0.00 2.67
600 2182 4.093011 CCGGGAAGAGGATAGATCAATCT 58.907 47.826 0.00 0.00 40.86 2.40
601 2183 5.265191 CCGGGAAGAGGATAGATCAATCTA 58.735 45.833 0.00 2.34 43.00 1.98
603 2185 5.163703 CGGGAAGAGGATAGATCAATCTACG 60.164 48.000 1.89 0.00 41.77 3.51
605 2187 5.417580 GGAAGAGGATAGATCAATCTACGCT 59.582 44.000 1.89 0.00 41.77 5.07
607 2189 6.509418 AGAGGATAGATCAATCTACGCTTC 57.491 41.667 1.89 4.46 41.77 3.86
609 2191 6.374333 AGAGGATAGATCAATCTACGCTTCTC 59.626 42.308 1.89 1.66 41.77 2.87
611 2193 6.374333 AGGATAGATCAATCTACGCTTCTCTC 59.626 42.308 1.89 0.00 41.77 3.20
612 2194 6.150307 GGATAGATCAATCTACGCTTCTCTCA 59.850 42.308 1.89 0.00 41.77 3.27
614 2196 6.403866 AGATCAATCTACGCTTCTCTCATT 57.596 37.500 0.00 0.00 34.85 2.57
615 2197 7.517614 AGATCAATCTACGCTTCTCTCATTA 57.482 36.000 0.00 0.00 34.85 1.90
617 2199 8.081633 AGATCAATCTACGCTTCTCTCATTAAG 58.918 37.037 0.00 0.00 34.85 1.85
618 2200 7.334844 TCAATCTACGCTTCTCTCATTAAGA 57.665 36.000 0.00 0.00 0.00 2.10
619 2201 7.772166 TCAATCTACGCTTCTCTCATTAAGAA 58.228 34.615 0.00 0.00 32.23 2.52
621 2203 8.873830 CAATCTACGCTTCTCTCATTAAGAAAA 58.126 33.333 0.00 0.00 32.60 2.29
622 2204 9.606631 AATCTACGCTTCTCTCATTAAGAAAAT 57.393 29.630 0.00 0.00 32.60 1.82
626 2208 8.202745 ACGCTTCTCTCATTAAGAAAATTAGG 57.797 34.615 0.00 0.00 32.60 2.69
627 2209 7.128976 CGCTTCTCTCATTAAGAAAATTAGGC 58.871 38.462 0.00 0.00 32.60 3.93
628 2210 7.201644 CGCTTCTCTCATTAAGAAAATTAGGCA 60.202 37.037 0.00 0.00 32.60 4.75
631 2213 9.911788 TTCTCTCATTAAGAAAATTAGGCATCT 57.088 29.630 0.00 0.00 32.23 2.90
632 2214 9.553064 TCTCTCATTAAGAAAATTAGGCATCTC 57.447 33.333 0.00 0.00 32.23 2.75
633 2215 9.558396 CTCTCATTAAGAAAATTAGGCATCTCT 57.442 33.333 0.00 0.00 32.23 3.10
634 2216 9.911788 TCTCATTAAGAAAATTAGGCATCTCTT 57.088 29.630 0.00 0.00 0.00 2.85
635 2217 9.947669 CTCATTAAGAAAATTAGGCATCTCTTG 57.052 33.333 0.00 0.00 0.00 3.02
636 2218 9.466497 TCATTAAGAAAATTAGGCATCTCTTGT 57.534 29.630 0.00 0.00 0.00 3.16
637 2219 9.727627 CATTAAGAAAATTAGGCATCTCTTGTC 57.272 33.333 0.00 0.00 0.00 3.18
638 2220 9.692325 ATTAAGAAAATTAGGCATCTCTTGTCT 57.308 29.630 0.00 0.00 44.33 3.41
639 2221 7.622893 AAGAAAATTAGGCATCTCTTGTCTC 57.377 36.000 0.00 0.00 40.24 3.36
640 2222 6.956497 AGAAAATTAGGCATCTCTTGTCTCT 58.044 36.000 0.00 0.00 40.24 3.10
641 2223 7.401246 AGAAAATTAGGCATCTCTTGTCTCTT 58.599 34.615 0.00 0.00 40.24 2.85
642 2224 7.552330 AGAAAATTAGGCATCTCTTGTCTCTTC 59.448 37.037 0.00 0.00 40.24 2.87
643 2225 2.957491 AGGCATCTCTTGTCTCTTCG 57.043 50.000 0.00 0.00 34.28 3.79
644 2226 2.175202 AGGCATCTCTTGTCTCTTCGT 58.825 47.619 0.00 0.00 34.28 3.85
645 2227 2.094286 AGGCATCTCTTGTCTCTTCGTG 60.094 50.000 0.00 0.00 34.28 4.35
646 2228 2.094494 GGCATCTCTTGTCTCTTCGTGA 60.094 50.000 0.00 0.00 0.00 4.35
647 2229 3.430098 GGCATCTCTTGTCTCTTCGTGAT 60.430 47.826 0.00 0.00 0.00 3.06
648 2230 4.180057 GCATCTCTTGTCTCTTCGTGATT 58.820 43.478 0.00 0.00 0.00 2.57
649 2231 4.267452 GCATCTCTTGTCTCTTCGTGATTC 59.733 45.833 0.00 0.00 0.00 2.52
650 2232 5.649557 CATCTCTTGTCTCTTCGTGATTCT 58.350 41.667 0.00 0.00 0.00 2.40
651 2233 5.713792 TCTCTTGTCTCTTCGTGATTCTT 57.286 39.130 0.00 0.00 0.00 2.52
652 2234 5.465051 TCTCTTGTCTCTTCGTGATTCTTG 58.535 41.667 0.00 0.00 0.00 3.02
653 2235 5.010112 TCTCTTGTCTCTTCGTGATTCTTGT 59.990 40.000 0.00 0.00 0.00 3.16
654 2236 6.206829 TCTCTTGTCTCTTCGTGATTCTTGTA 59.793 38.462 0.00 0.00 0.00 2.41
655 2237 6.925211 TCTTGTCTCTTCGTGATTCTTGTAT 58.075 36.000 0.00 0.00 0.00 2.29
656 2238 7.378966 TCTTGTCTCTTCGTGATTCTTGTATT 58.621 34.615 0.00 0.00 0.00 1.89
657 2239 8.520351 TCTTGTCTCTTCGTGATTCTTGTATTA 58.480 33.333 0.00 0.00 0.00 0.98
658 2240 8.462143 TTGTCTCTTCGTGATTCTTGTATTAC 57.538 34.615 0.00 0.00 0.00 1.89
659 2241 7.827701 TGTCTCTTCGTGATTCTTGTATTACT 58.172 34.615 0.00 0.00 0.00 2.24
660 2242 7.968956 TGTCTCTTCGTGATTCTTGTATTACTC 59.031 37.037 0.00 0.00 0.00 2.59
661 2243 7.968956 GTCTCTTCGTGATTCTTGTATTACTCA 59.031 37.037 0.00 0.00 0.00 3.41
662 2244 8.687242 TCTCTTCGTGATTCTTGTATTACTCAT 58.313 33.333 0.00 0.00 0.00 2.90
663 2245 8.634475 TCTTCGTGATTCTTGTATTACTCATG 57.366 34.615 0.00 0.00 0.00 3.07
664 2246 8.251026 TCTTCGTGATTCTTGTATTACTCATGT 58.749 33.333 0.00 0.00 0.00 3.21
665 2247 8.771920 TTCGTGATTCTTGTATTACTCATGTT 57.228 30.769 0.00 0.00 0.00 2.71
666 2248 9.863845 TTCGTGATTCTTGTATTACTCATGTTA 57.136 29.630 0.00 0.00 0.00 2.41
667 2249 9.863845 TCGTGATTCTTGTATTACTCATGTTAA 57.136 29.630 0.00 0.00 0.00 2.01
668 2250 9.901724 CGTGATTCTTGTATTACTCATGTTAAC 57.098 33.333 0.00 0.00 0.00 2.01
670 2252 9.093970 TGATTCTTGTATTACTCATGTTAACCG 57.906 33.333 2.48 0.00 0.00 4.44
671 2253 9.095065 GATTCTTGTATTACTCATGTTAACCGT 57.905 33.333 2.48 0.00 0.00 4.83
673 2255 8.915871 TCTTGTATTACTCATGTTAACCGTAC 57.084 34.615 2.48 0.00 0.00 3.67
674 2256 8.742777 TCTTGTATTACTCATGTTAACCGTACT 58.257 33.333 2.48 0.00 0.00 2.73
675 2257 8.915871 TTGTATTACTCATGTTAACCGTACTC 57.084 34.615 2.48 0.00 0.00 2.59
676 2258 8.054152 TGTATTACTCATGTTAACCGTACTCA 57.946 34.615 2.48 0.00 0.00 3.41
677 2259 8.186163 TGTATTACTCATGTTAACCGTACTCAG 58.814 37.037 2.48 0.00 0.00 3.35
678 2260 6.822667 TTACTCATGTTAACCGTACTCAGA 57.177 37.500 2.48 0.00 0.00 3.27
679 2261 5.717078 ACTCATGTTAACCGTACTCAGAA 57.283 39.130 2.48 0.00 0.00 3.02
680 2262 6.282199 ACTCATGTTAACCGTACTCAGAAT 57.718 37.500 2.48 0.00 0.00 2.40
681 2263 7.400599 ACTCATGTTAACCGTACTCAGAATA 57.599 36.000 2.48 0.00 0.00 1.75
682 2264 7.833786 ACTCATGTTAACCGTACTCAGAATAA 58.166 34.615 2.48 0.00 0.00 1.40
683 2265 8.475639 ACTCATGTTAACCGTACTCAGAATAAT 58.524 33.333 2.48 0.00 0.00 1.28
684 2266 8.642908 TCATGTTAACCGTACTCAGAATAATG 57.357 34.615 2.48 0.00 0.00 1.90
685 2267 8.255206 TCATGTTAACCGTACTCAGAATAATGT 58.745 33.333 2.48 0.00 0.00 2.71
686 2268 8.879759 CATGTTAACCGTACTCAGAATAATGTT 58.120 33.333 2.48 0.00 0.00 2.71
688 2270 9.577110 TGTTAACCGTACTCAGAATAATGTTAG 57.423 33.333 2.48 0.00 0.00 2.34
689 2271 9.578439 GTTAACCGTACTCAGAATAATGTTAGT 57.422 33.333 0.00 0.00 0.00 2.24
690 2272 9.577110 TTAACCGTACTCAGAATAATGTTAGTG 57.423 33.333 0.00 0.00 0.00 2.74
691 2273 7.400599 ACCGTACTCAGAATAATGTTAGTGA 57.599 36.000 0.00 0.00 0.00 3.41
692 2274 8.008513 ACCGTACTCAGAATAATGTTAGTGAT 57.991 34.615 0.00 0.00 0.00 3.06
693 2275 9.128404 ACCGTACTCAGAATAATGTTAGTGATA 57.872 33.333 0.00 0.00 0.00 2.15
694 2276 9.613957 CCGTACTCAGAATAATGTTAGTGATAG 57.386 37.037 0.00 0.00 0.00 2.08
709 2291 9.991906 TGTTAGTGATAGTTTAGCTAAGTTTGT 57.008 29.630 6.24 0.00 32.72 2.83
715 2297 9.871238 TGATAGTTTAGCTAAGTTTGTTAGAGG 57.129 33.333 6.24 0.00 32.72 3.69
716 2298 9.872721 GATAGTTTAGCTAAGTTTGTTAGAGGT 57.127 33.333 6.24 0.00 32.72 3.85
717 2299 7.964604 AGTTTAGCTAAGTTTGTTAGAGGTG 57.035 36.000 6.24 0.00 0.00 4.00
718 2300 7.732996 AGTTTAGCTAAGTTTGTTAGAGGTGA 58.267 34.615 6.24 0.00 0.00 4.02
719 2301 7.873505 AGTTTAGCTAAGTTTGTTAGAGGTGAG 59.126 37.037 6.24 0.00 0.00 3.51
720 2302 5.153950 AGCTAAGTTTGTTAGAGGTGAGG 57.846 43.478 0.00 0.00 0.00 3.86
721 2303 4.020128 AGCTAAGTTTGTTAGAGGTGAGGG 60.020 45.833 0.00 0.00 0.00 4.30
722 2304 2.861147 AGTTTGTTAGAGGTGAGGGC 57.139 50.000 0.00 0.00 0.00 5.19
723 2305 2.054799 AGTTTGTTAGAGGTGAGGGCA 58.945 47.619 0.00 0.00 0.00 5.36
724 2306 2.039084 AGTTTGTTAGAGGTGAGGGCAG 59.961 50.000 0.00 0.00 0.00 4.85
725 2307 2.024176 TTGTTAGAGGTGAGGGCAGA 57.976 50.000 0.00 0.00 0.00 4.26
726 2308 2.024176 TGTTAGAGGTGAGGGCAGAA 57.976 50.000 0.00 0.00 0.00 3.02
727 2309 2.551270 TGTTAGAGGTGAGGGCAGAAT 58.449 47.619 0.00 0.00 0.00 2.40
728 2310 3.719871 TGTTAGAGGTGAGGGCAGAATA 58.280 45.455 0.00 0.00 0.00 1.75
729 2311 4.298626 TGTTAGAGGTGAGGGCAGAATAT 58.701 43.478 0.00 0.00 0.00 1.28
730 2312 4.101585 TGTTAGAGGTGAGGGCAGAATATG 59.898 45.833 0.00 0.00 0.00 1.78
731 2313 3.051940 AGAGGTGAGGGCAGAATATGA 57.948 47.619 0.00 0.00 0.00 2.15
732 2314 2.703007 AGAGGTGAGGGCAGAATATGAC 59.297 50.000 0.00 0.00 35.46 3.06
733 2315 2.703007 GAGGTGAGGGCAGAATATGACT 59.297 50.000 0.00 0.00 36.99 3.41
734 2316 3.118531 AGGTGAGGGCAGAATATGACTT 58.881 45.455 0.00 0.00 36.99 3.01
735 2317 3.118112 AGGTGAGGGCAGAATATGACTTG 60.118 47.826 0.00 0.00 36.99 3.16
736 2318 3.209410 GTGAGGGCAGAATATGACTTGG 58.791 50.000 0.00 0.00 36.99 3.61
737 2319 2.225467 GAGGGCAGAATATGACTTGGC 58.775 52.381 0.00 0.00 36.99 4.52
738 2320 1.849039 AGGGCAGAATATGACTTGGCT 59.151 47.619 0.00 0.00 36.99 4.75
739 2321 3.048600 AGGGCAGAATATGACTTGGCTA 58.951 45.455 0.00 0.00 36.99 3.93
740 2322 3.072184 AGGGCAGAATATGACTTGGCTAG 59.928 47.826 0.00 0.00 36.99 3.42
741 2323 3.406764 GGCAGAATATGACTTGGCTAGG 58.593 50.000 0.20 0.00 32.26 3.02
742 2324 3.406764 GCAGAATATGACTTGGCTAGGG 58.593 50.000 0.20 0.00 0.00 3.53
743 2325 3.181450 GCAGAATATGACTTGGCTAGGGT 60.181 47.826 0.20 0.00 0.00 4.34
744 2326 4.636249 CAGAATATGACTTGGCTAGGGTC 58.364 47.826 0.20 0.00 0.00 4.46
745 2327 4.346418 CAGAATATGACTTGGCTAGGGTCT 59.654 45.833 0.20 0.00 0.00 3.85
746 2328 4.346418 AGAATATGACTTGGCTAGGGTCTG 59.654 45.833 0.20 0.00 0.00 3.51
747 2329 1.207791 ATGACTTGGCTAGGGTCTGG 58.792 55.000 0.20 0.00 0.00 3.86
748 2330 1.222113 GACTTGGCTAGGGTCTGGC 59.778 63.158 0.20 0.00 37.24 4.85
758 2340 4.404691 GGTCTGGCCCTGAAGTTG 57.595 61.111 0.00 0.00 0.00 3.16
761 2343 0.538287 GTCTGGCCCTGAAGTTGCTT 60.538 55.000 0.00 0.00 0.00 3.91
763 2345 0.316204 CTGGCCCTGAAGTTGCTTTG 59.684 55.000 0.00 0.00 0.00 2.77
765 2347 0.315251 GGCCCTGAAGTTGCTTTGTC 59.685 55.000 0.00 0.00 0.00 3.18
767 2349 1.683385 GCCCTGAAGTTGCTTTGTCTT 59.317 47.619 0.00 0.00 0.00 3.01
770 2352 4.557496 GCCCTGAAGTTGCTTTGTCTTTAG 60.557 45.833 0.00 0.00 0.00 1.85
773 2355 5.221126 CCTGAAGTTGCTTTGTCTTTAGCTT 60.221 40.000 0.00 0.00 38.22 3.74
774 2356 6.207691 TGAAGTTGCTTTGTCTTTAGCTTT 57.792 33.333 0.00 0.00 38.22 3.51
775 2357 6.630071 TGAAGTTGCTTTGTCTTTAGCTTTT 58.370 32.000 0.00 0.00 38.22 2.27
776 2358 6.531240 TGAAGTTGCTTTGTCTTTAGCTTTTG 59.469 34.615 0.00 0.00 38.22 2.44
787 2369 9.897744 TTGTCTTTAGCTTTTGATGATTGTAAG 57.102 29.630 0.00 0.00 0.00 2.34
788 2370 8.514594 TGTCTTTAGCTTTTGATGATTGTAAGG 58.485 33.333 0.00 0.00 0.00 2.69
789 2371 8.730680 GTCTTTAGCTTTTGATGATTGTAAGGA 58.269 33.333 0.00 0.00 0.00 3.36
790 2372 9.466497 TCTTTAGCTTTTGATGATTGTAAGGAT 57.534 29.630 0.00 0.00 0.00 3.24
791 2373 9.727627 CTTTAGCTTTTGATGATTGTAAGGATC 57.272 33.333 0.00 0.00 0.00 3.36
792 2374 9.466497 TTTAGCTTTTGATGATTGTAAGGATCT 57.534 29.630 0.00 0.00 0.00 2.75
796 2378 8.411683 GCTTTTGATGATTGTAAGGATCTTGAT 58.588 33.333 0.00 0.00 0.00 2.57
799 2381 9.465199 TTTGATGATTGTAAGGATCTTGATTGA 57.535 29.630 0.00 0.00 0.00 2.57
800 2382 8.672823 TGATGATTGTAAGGATCTTGATTGAG 57.327 34.615 0.00 0.00 0.00 3.02
801 2383 8.270030 TGATGATTGTAAGGATCTTGATTGAGT 58.730 33.333 0.00 0.00 0.00 3.41
811 2393 9.965902 AAGGATCTTGATTGAGTAATACAAGTT 57.034 29.630 0.00 0.00 35.41 2.66
812 2394 9.965902 AGGATCTTGATTGAGTAATACAAGTTT 57.034 29.630 0.00 0.00 35.41 2.66
817 2399 9.612620 CTTGATTGAGTAATACAAGTTTTCACC 57.387 33.333 0.00 0.00 32.66 4.02
819 2401 6.548441 TTGAGTAATACAAGTTTTCACCCG 57.452 37.500 0.00 0.00 0.00 5.28
821 2403 5.221682 TGAGTAATACAAGTTTTCACCCGGA 60.222 40.000 0.73 0.00 0.00 5.14
822 2404 5.623169 AGTAATACAAGTTTTCACCCGGAA 58.377 37.500 0.73 0.00 0.00 4.30
823 2405 6.063404 AGTAATACAAGTTTTCACCCGGAAA 58.937 36.000 0.73 0.00 43.59 3.13
918 2553 1.276421 TCTGCTGCTCTTCTACCAACC 59.724 52.381 0.00 0.00 0.00 3.77
919 2554 1.277557 CTGCTGCTCTTCTACCAACCT 59.722 52.381 0.00 0.00 0.00 3.50
931 2566 1.455822 ACCAACCTCCTCCATTTCCA 58.544 50.000 0.00 0.00 0.00 3.53
932 2567 1.075536 ACCAACCTCCTCCATTTCCAC 59.924 52.381 0.00 0.00 0.00 4.02
933 2568 1.075374 CCAACCTCCTCCATTTCCACA 59.925 52.381 0.00 0.00 0.00 4.17
934 2569 2.440409 CAACCTCCTCCATTTCCACAG 58.560 52.381 0.00 0.00 0.00 3.66
1009 2689 1.299976 GGTGACCGGATGGAAAGCT 59.700 57.895 9.46 0.00 39.21 3.74
1365 3045 2.397413 CTGTCACCAACTTCCGCCCT 62.397 60.000 0.00 0.00 0.00 5.19
1380 3060 2.902846 CCTCTCGCCGAGTCCGAT 60.903 66.667 14.64 0.00 38.11 4.18
1410 3090 4.459089 GCCGAGCTCCGCTTCCTT 62.459 66.667 18.30 0.00 39.88 3.36
1434 3114 1.536662 ACTCTCCAAGGCCGAGGTT 60.537 57.895 15.04 0.00 0.00 3.50
1542 3228 2.341101 ATCGTCGTCGTTGCCTCCT 61.341 57.895 1.33 0.00 38.33 3.69
1551 3237 2.922503 TTGCCTCCTGCCTCGTCA 60.923 61.111 0.00 0.00 40.16 4.35
1561 3247 2.095252 GCCTCGTCACCTTCTTCGC 61.095 63.158 0.00 0.00 0.00 4.70
1674 3360 2.280797 AAGCAGCACGCCGAGAAA 60.281 55.556 0.00 0.00 44.04 2.52
1696 3382 2.254737 CTTCCCTCTGCAGCTCCCTG 62.255 65.000 9.47 0.00 42.13 4.45
1758 3444 2.094659 CAACTTCGATGACGCGGCT 61.095 57.895 15.80 0.00 39.58 5.52
1764 3450 3.430862 GATGACGCGGCTGGCAAA 61.431 61.111 15.80 0.00 43.84 3.68
1765 3451 3.667429 GATGACGCGGCTGGCAAAC 62.667 63.158 15.80 0.00 43.84 2.93
1806 3492 3.567308 TGGAACAGCAGCCAGAGT 58.433 55.556 0.00 0.00 0.00 3.24
1947 3633 1.228154 GTCCAAGACCACCACCACC 60.228 63.158 0.00 0.00 0.00 4.61
1954 3640 4.980805 CCACCACCACCACGACGG 62.981 72.222 0.00 0.00 42.50 4.79
2165 3905 1.586564 GCGTAGACTTCGCGCTGAT 60.587 57.895 10.78 0.00 46.55 2.90
2198 3956 3.697045 CCGAGGTCAAGAGATCAACTAGT 59.303 47.826 0.00 0.00 0.00 2.57
2216 3974 2.808919 AGTAGGAGTACAAGCAGCAGA 58.191 47.619 0.00 0.00 0.00 4.26
2283 4044 0.813821 GGGGTCAAAAGATCAGCTGC 59.186 55.000 9.47 0.00 0.00 5.25
2337 4098 5.989168 TCACATAGTCACGTTCTGTTGATTT 59.011 36.000 0.00 0.00 0.00 2.17
2354 4118 3.711704 TGATTTACCACTGGATCCTCTCC 59.288 47.826 14.23 0.00 45.19 3.71
2368 4132 7.315066 GGATCCTCTCCAAGATTAGAGATTT 57.685 40.000 3.84 0.00 44.26 2.17
2387 4151 5.545723 AGATTTGAGTTTGGAGGAGAAGAGA 59.454 40.000 0.00 0.00 0.00 3.10
2437 4201 1.271856 TTGGTCGGGAATAGCTCACA 58.728 50.000 0.00 0.00 0.00 3.58
2440 4204 1.202428 GGTCGGGAATAGCTCACACTC 60.202 57.143 0.00 0.00 0.00 3.51
2642 4825 8.152898 TGTTAATACATCTGCAAGCTGATCTAT 58.847 33.333 10.90 7.46 32.84 1.98
2651 4834 8.187913 TCTGCAAGCTGATCTATAGACTTAAT 57.812 34.615 4.10 0.00 0.00 1.40
2700 4883 6.531503 TCTAATTTCTCTCGGATGAAGTGT 57.468 37.500 0.00 0.00 0.00 3.55
2882 5788 3.023832 CCATGGACCTAAATTCCGCTTT 58.976 45.455 5.56 0.00 35.70 3.51
2972 5878 1.876416 GCAGTAGCCCGAAGTTGAACA 60.876 52.381 0.00 0.00 33.58 3.18
2991 5897 6.393171 TGAACATCTATCATCTAAGCATCCG 58.607 40.000 0.00 0.00 0.00 4.18
3059 6734 6.818644 TGATTAGAGAACAAGATTCCTTTCCG 59.181 38.462 0.00 0.00 0.00 4.30
3061 6736 5.228945 AGAGAACAAGATTCCTTTCCGAA 57.771 39.130 0.00 0.00 0.00 4.30
3157 6941 4.171005 GCTTACGACACTAACAGCATACA 58.829 43.478 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.751924 GTAACGCATCTCCTCCTGACT 59.248 52.381 0.00 0.00 0.00 3.41
6 7 2.544685 CAAGTAACGCATCTCCTCCTG 58.455 52.381 0.00 0.00 0.00 3.86
9 10 1.291132 GCCAAGTAACGCATCTCCTC 58.709 55.000 0.00 0.00 0.00 3.71
13 14 1.196808 CAAACGCCAAGTAACGCATCT 59.803 47.619 0.00 0.00 0.00 2.90
16 17 1.649815 CCAAACGCCAAGTAACGCA 59.350 52.632 0.00 0.00 0.00 5.24
17 18 1.728074 GCCAAACGCCAAGTAACGC 60.728 57.895 0.00 0.00 0.00 4.84
18 19 1.439693 CGCCAAACGCCAAGTAACG 60.440 57.895 0.00 0.00 33.16 3.18
19 20 4.526152 CGCCAAACGCCAAGTAAC 57.474 55.556 0.00 0.00 33.16 2.50
86 87 3.056322 AGTGCCATTCTTGCATTTCCTTC 60.056 43.478 0.00 0.00 41.46 3.46
165 168 6.756221 AGACGATGAAGATGATGATGAATGA 58.244 36.000 0.00 0.00 0.00 2.57
167 170 7.443477 AGAAGACGATGAAGATGATGATGAAT 58.557 34.615 0.00 0.00 0.00 2.57
210 232 7.093988 TGGTGTGGGTCAATTGTTAGATATTTG 60.094 37.037 5.13 0.00 0.00 2.32
221 243 1.753649 TGTGTTGGTGTGGGTCAATTG 59.246 47.619 0.00 0.00 0.00 2.32
223 245 2.031120 CTTGTGTTGGTGTGGGTCAAT 58.969 47.619 0.00 0.00 0.00 2.57
304 1675 8.111836 GCATCGTCGATATTAGTGTTGTTTAAA 58.888 33.333 7.56 0.00 0.00 1.52
305 1676 7.275999 TGCATCGTCGATATTAGTGTTGTTTAA 59.724 33.333 7.56 0.00 0.00 1.52
306 1677 6.752815 TGCATCGTCGATATTAGTGTTGTTTA 59.247 34.615 7.56 0.00 0.00 2.01
307 1678 5.579119 TGCATCGTCGATATTAGTGTTGTTT 59.421 36.000 7.56 0.00 0.00 2.83
308 1679 5.106442 TGCATCGTCGATATTAGTGTTGTT 58.894 37.500 7.56 0.00 0.00 2.83
309 1680 4.678622 TGCATCGTCGATATTAGTGTTGT 58.321 39.130 7.56 0.00 0.00 3.32
310 1681 5.635549 TTGCATCGTCGATATTAGTGTTG 57.364 39.130 7.56 0.00 0.00 3.33
311 1682 6.844696 ATTTGCATCGTCGATATTAGTGTT 57.155 33.333 7.56 0.00 0.00 3.32
312 1683 7.145985 AGTATTTGCATCGTCGATATTAGTGT 58.854 34.615 7.56 0.00 0.00 3.55
313 1684 7.568267 AGTATTTGCATCGTCGATATTAGTG 57.432 36.000 7.56 0.00 0.00 2.74
321 1692 9.687210 ACTTATTTATAGTATTTGCATCGTCGA 57.313 29.630 0.00 0.00 0.00 4.20
322 1693 9.727403 CACTTATTTATAGTATTTGCATCGTCG 57.273 33.333 0.00 0.00 0.00 5.12
463 2045 7.122048 ACGATCTTATATCATGAGATGGAGGA 58.878 38.462 13.11 0.50 35.95 3.71
467 2049 8.173775 GCAAAACGATCTTATATCATGAGATGG 58.826 37.037 13.11 7.57 35.95 3.51
501 2083 9.275398 AGTGTAAGTGTAGTATAGCTAAGCTAG 57.725 37.037 0.00 0.00 44.66 3.42
517 2099 7.834681 TCTCAATATAGAGGTGAGTGTAAGTGT 59.165 37.037 2.17 0.00 39.82 3.55
518 2100 8.226819 TCTCAATATAGAGGTGAGTGTAAGTG 57.773 38.462 2.17 0.00 39.82 3.16
529 2111 9.253832 CTGTAGAATCCATCTCAATATAGAGGT 57.746 37.037 0.00 0.00 39.71 3.85
530 2112 9.253832 ACTGTAGAATCCATCTCAATATAGAGG 57.746 37.037 0.00 0.00 39.71 3.69
533 2115 9.149225 GCAACTGTAGAATCCATCTCAATATAG 57.851 37.037 0.00 0.00 39.71 1.31
534 2116 8.874156 AGCAACTGTAGAATCCATCTCAATATA 58.126 33.333 0.00 0.00 39.71 0.86
535 2117 7.660617 CAGCAACTGTAGAATCCATCTCAATAT 59.339 37.037 0.00 0.00 39.71 1.28
537 2119 5.821470 CAGCAACTGTAGAATCCATCTCAAT 59.179 40.000 0.00 0.00 39.71 2.57
539 2121 4.223700 ACAGCAACTGTAGAATCCATCTCA 59.776 41.667 0.00 0.00 43.46 3.27
540 2122 4.764172 ACAGCAACTGTAGAATCCATCTC 58.236 43.478 0.00 0.00 43.46 2.75
541 2123 4.833478 ACAGCAACTGTAGAATCCATCT 57.167 40.909 0.00 0.00 43.46 2.90
542 2124 6.595716 ACTTAACAGCAACTGTAGAATCCATC 59.404 38.462 0.00 0.00 44.62 3.51
543 2125 6.476378 ACTTAACAGCAACTGTAGAATCCAT 58.524 36.000 0.00 0.00 44.62 3.41
544 2126 5.865085 ACTTAACAGCAACTGTAGAATCCA 58.135 37.500 0.00 0.00 44.62 3.41
545 2127 6.426937 TCAACTTAACAGCAACTGTAGAATCC 59.573 38.462 0.00 0.00 44.62 3.01
546 2128 7.421530 TCAACTTAACAGCAACTGTAGAATC 57.578 36.000 0.00 0.00 44.62 2.52
547 2129 7.119846 GGATCAACTTAACAGCAACTGTAGAAT 59.880 37.037 0.00 0.00 44.62 2.40
549 2131 5.932303 GGATCAACTTAACAGCAACTGTAGA 59.068 40.000 0.00 0.00 44.62 2.59
550 2132 5.700832 TGGATCAACTTAACAGCAACTGTAG 59.299 40.000 0.00 0.00 44.62 2.74
551 2133 5.616270 TGGATCAACTTAACAGCAACTGTA 58.384 37.500 0.00 0.00 44.62 2.74
553 2135 5.437289 TTGGATCAACTTAACAGCAACTG 57.563 39.130 0.00 0.00 37.52 3.16
554 2136 4.520492 CCTTGGATCAACTTAACAGCAACT 59.480 41.667 0.00 0.00 0.00 3.16
555 2137 4.798574 CCTTGGATCAACTTAACAGCAAC 58.201 43.478 0.00 0.00 0.00 4.17
556 2138 3.255642 GCCTTGGATCAACTTAACAGCAA 59.744 43.478 0.00 0.00 0.00 3.91
558 2140 2.164422 GGCCTTGGATCAACTTAACAGC 59.836 50.000 0.00 0.00 0.00 4.40
560 2142 2.432444 CGGCCTTGGATCAACTTAACA 58.568 47.619 0.00 0.00 0.00 2.41
561 2143 1.743394 CCGGCCTTGGATCAACTTAAC 59.257 52.381 0.00 0.00 0.00 2.01
563 2145 0.254747 CCCGGCCTTGGATCAACTTA 59.745 55.000 0.00 0.00 0.00 2.24
565 2147 1.497309 TTCCCGGCCTTGGATCAACT 61.497 55.000 11.32 0.00 0.00 3.16
566 2148 1.001393 TTCCCGGCCTTGGATCAAC 60.001 57.895 11.32 0.00 0.00 3.18
567 2149 1.204786 TCTTCCCGGCCTTGGATCAA 61.205 55.000 11.32 0.00 0.00 2.57
568 2150 1.615124 TCTTCCCGGCCTTGGATCA 60.615 57.895 11.32 0.00 0.00 2.92
569 2151 1.147153 CTCTTCCCGGCCTTGGATC 59.853 63.158 11.32 0.00 0.00 3.36
570 2152 2.378634 CCTCTTCCCGGCCTTGGAT 61.379 63.158 11.32 0.00 0.00 3.41
571 2153 2.840203 ATCCTCTTCCCGGCCTTGGA 62.840 60.000 6.78 6.78 0.00 3.53
574 2156 0.264955 TCTATCCTCTTCCCGGCCTT 59.735 55.000 0.00 0.00 0.00 4.35
576 2158 0.899019 GATCTATCCTCTTCCCGGCC 59.101 60.000 0.00 0.00 0.00 6.13
577 2159 1.633774 TGATCTATCCTCTTCCCGGC 58.366 55.000 0.00 0.00 0.00 6.13
579 2161 5.163703 CGTAGATTGATCTATCCTCTTCCCG 60.164 48.000 12.72 3.06 41.09 5.14
581 2163 5.417580 AGCGTAGATTGATCTATCCTCTTCC 59.582 44.000 12.72 0.00 41.09 3.46
582 2164 6.509418 AGCGTAGATTGATCTATCCTCTTC 57.491 41.667 12.72 1.13 41.09 2.87
583 2165 6.719370 AGAAGCGTAGATTGATCTATCCTCTT 59.281 38.462 12.72 10.53 41.09 2.85
584 2166 6.245408 AGAAGCGTAGATTGATCTATCCTCT 58.755 40.000 12.72 0.00 41.09 3.69
585 2167 6.374333 AGAGAAGCGTAGATTGATCTATCCTC 59.626 42.308 12.72 10.16 41.09 3.71
586 2168 6.245408 AGAGAAGCGTAGATTGATCTATCCT 58.755 40.000 12.72 2.31 41.09 3.24
587 2169 6.150307 TGAGAGAAGCGTAGATTGATCTATCC 59.850 42.308 12.72 0.00 41.09 2.59
588 2170 7.139896 TGAGAGAAGCGTAGATTGATCTATC 57.860 40.000 8.88 8.88 41.09 2.08
590 2172 7.517614 AATGAGAGAAGCGTAGATTGATCTA 57.482 36.000 0.00 0.00 34.67 1.98
592 2174 8.079203 TCTTAATGAGAGAAGCGTAGATTGATC 58.921 37.037 0.00 0.00 34.67 2.92
593 2175 7.946207 TCTTAATGAGAGAAGCGTAGATTGAT 58.054 34.615 0.00 0.00 34.67 2.57
594 2176 7.334844 TCTTAATGAGAGAAGCGTAGATTGA 57.665 36.000 0.00 0.00 34.67 2.57
595 2177 7.993821 TTCTTAATGAGAGAAGCGTAGATTG 57.006 36.000 0.00 0.00 34.67 2.67
596 2178 9.606631 ATTTTCTTAATGAGAGAAGCGTAGATT 57.393 29.630 0.00 0.00 41.04 2.40
597 2179 9.606631 AATTTTCTTAATGAGAGAAGCGTAGAT 57.393 29.630 0.00 0.00 32.61 1.98
600 2182 9.314321 CCTAATTTTCTTAATGAGAGAAGCGTA 57.686 33.333 0.00 0.00 32.61 4.42
601 2183 7.201652 GCCTAATTTTCTTAATGAGAGAAGCGT 60.202 37.037 0.00 0.00 32.61 5.07
603 2185 7.989826 TGCCTAATTTTCTTAATGAGAGAAGC 58.010 34.615 0.00 0.00 32.61 3.86
605 2187 9.911788 AGATGCCTAATTTTCTTAATGAGAGAA 57.088 29.630 0.00 0.00 35.37 2.87
607 2189 9.558396 AGAGATGCCTAATTTTCTTAATGAGAG 57.442 33.333 0.00 0.00 35.37 3.20
609 2191 9.947669 CAAGAGATGCCTAATTTTCTTAATGAG 57.052 33.333 0.00 0.00 0.00 2.90
611 2193 9.727627 GACAAGAGATGCCTAATTTTCTTAATG 57.272 33.333 0.00 0.00 0.00 1.90
612 2194 9.692325 AGACAAGAGATGCCTAATTTTCTTAAT 57.308 29.630 0.00 0.00 0.00 1.40
614 2196 8.543774 AGAGACAAGAGATGCCTAATTTTCTTA 58.456 33.333 0.00 0.00 0.00 2.10
615 2197 7.401246 AGAGACAAGAGATGCCTAATTTTCTT 58.599 34.615 0.00 0.00 0.00 2.52
617 2199 7.465245 CGAAGAGACAAGAGATGCCTAATTTTC 60.465 40.741 0.00 0.00 0.00 2.29
618 2200 6.314896 CGAAGAGACAAGAGATGCCTAATTTT 59.685 38.462 0.00 0.00 0.00 1.82
619 2201 5.814705 CGAAGAGACAAGAGATGCCTAATTT 59.185 40.000 0.00 0.00 0.00 1.82
621 2203 4.404073 ACGAAGAGACAAGAGATGCCTAAT 59.596 41.667 0.00 0.00 0.00 1.73
622 2204 3.764434 ACGAAGAGACAAGAGATGCCTAA 59.236 43.478 0.00 0.00 0.00 2.69
624 2206 2.094286 CACGAAGAGACAAGAGATGCCT 60.094 50.000 0.00 0.00 0.00 4.75
625 2207 2.094494 TCACGAAGAGACAAGAGATGCC 60.094 50.000 0.00 0.00 0.00 4.40
626 2208 3.223423 TCACGAAGAGACAAGAGATGC 57.777 47.619 0.00 0.00 0.00 3.91
627 2209 5.649557 AGAATCACGAAGAGACAAGAGATG 58.350 41.667 0.00 0.00 0.00 2.90
628 2210 5.913137 AGAATCACGAAGAGACAAGAGAT 57.087 39.130 0.00 0.00 0.00 2.75
630 2212 5.226396 ACAAGAATCACGAAGAGACAAGAG 58.774 41.667 0.00 0.00 0.00 2.85
631 2213 5.201713 ACAAGAATCACGAAGAGACAAGA 57.798 39.130 0.00 0.00 0.00 3.02
632 2214 7.588143 AATACAAGAATCACGAAGAGACAAG 57.412 36.000 0.00 0.00 0.00 3.16
633 2215 8.304596 AGTAATACAAGAATCACGAAGAGACAA 58.695 33.333 0.00 0.00 0.00 3.18
634 2216 7.827701 AGTAATACAAGAATCACGAAGAGACA 58.172 34.615 0.00 0.00 0.00 3.41
635 2217 7.968956 TGAGTAATACAAGAATCACGAAGAGAC 59.031 37.037 0.00 0.00 0.00 3.36
636 2218 8.051901 TGAGTAATACAAGAATCACGAAGAGA 57.948 34.615 0.00 0.00 0.00 3.10
637 2219 8.750416 CATGAGTAATACAAGAATCACGAAGAG 58.250 37.037 0.00 0.00 0.00 2.85
638 2220 8.251026 ACATGAGTAATACAAGAATCACGAAGA 58.749 33.333 0.00 0.00 0.00 2.87
639 2221 8.412608 ACATGAGTAATACAAGAATCACGAAG 57.587 34.615 0.00 0.00 0.00 3.79
640 2222 8.771920 AACATGAGTAATACAAGAATCACGAA 57.228 30.769 0.00 0.00 0.00 3.85
641 2223 9.863845 TTAACATGAGTAATACAAGAATCACGA 57.136 29.630 0.00 0.00 0.00 4.35
642 2224 9.901724 GTTAACATGAGTAATACAAGAATCACG 57.098 33.333 0.00 0.00 0.00 4.35
644 2226 9.093970 CGGTTAACATGAGTAATACAAGAATCA 57.906 33.333 8.10 0.00 0.00 2.57
645 2227 9.095065 ACGGTTAACATGAGTAATACAAGAATC 57.905 33.333 8.10 0.00 0.00 2.52
647 2229 9.357652 GTACGGTTAACATGAGTAATACAAGAA 57.642 33.333 8.10 0.00 0.00 2.52
648 2230 8.742777 AGTACGGTTAACATGAGTAATACAAGA 58.257 33.333 8.10 0.00 0.00 3.02
649 2231 8.922058 AGTACGGTTAACATGAGTAATACAAG 57.078 34.615 8.10 0.00 0.00 3.16
650 2232 8.522003 TGAGTACGGTTAACATGAGTAATACAA 58.478 33.333 8.10 0.00 0.00 2.41
651 2233 8.054152 TGAGTACGGTTAACATGAGTAATACA 57.946 34.615 8.10 4.96 0.00 2.29
652 2234 8.400947 TCTGAGTACGGTTAACATGAGTAATAC 58.599 37.037 8.10 0.00 0.00 1.89
653 2235 8.510243 TCTGAGTACGGTTAACATGAGTAATA 57.490 34.615 8.10 0.00 0.00 0.98
654 2236 7.400599 TCTGAGTACGGTTAACATGAGTAAT 57.599 36.000 8.10 5.36 0.00 1.89
655 2237 6.822667 TCTGAGTACGGTTAACATGAGTAA 57.177 37.500 8.10 0.00 0.00 2.24
656 2238 6.822667 TTCTGAGTACGGTTAACATGAGTA 57.177 37.500 8.10 3.51 0.00 2.59
657 2239 5.717078 TTCTGAGTACGGTTAACATGAGT 57.283 39.130 8.10 4.44 0.00 3.41
658 2240 8.755941 CATTATTCTGAGTACGGTTAACATGAG 58.244 37.037 8.10 0.00 0.00 2.90
659 2241 8.255206 ACATTATTCTGAGTACGGTTAACATGA 58.745 33.333 8.10 0.00 0.00 3.07
660 2242 8.420374 ACATTATTCTGAGTACGGTTAACATG 57.580 34.615 8.10 1.63 0.00 3.21
662 2244 9.577110 CTAACATTATTCTGAGTACGGTTAACA 57.423 33.333 8.10 0.00 0.00 2.41
663 2245 9.578439 ACTAACATTATTCTGAGTACGGTTAAC 57.422 33.333 0.00 0.00 0.00 2.01
664 2246 9.577110 CACTAACATTATTCTGAGTACGGTTAA 57.423 33.333 0.00 0.00 0.00 2.01
665 2247 8.959548 TCACTAACATTATTCTGAGTACGGTTA 58.040 33.333 0.00 0.00 0.00 2.85
666 2248 7.833786 TCACTAACATTATTCTGAGTACGGTT 58.166 34.615 0.00 0.00 0.00 4.44
667 2249 7.400599 TCACTAACATTATTCTGAGTACGGT 57.599 36.000 0.00 0.00 0.00 4.83
668 2250 9.613957 CTATCACTAACATTATTCTGAGTACGG 57.386 37.037 0.00 0.00 0.00 4.02
683 2265 9.991906 ACAAACTTAGCTAAACTATCACTAACA 57.008 29.630 7.74 0.00 0.00 2.41
689 2271 9.871238 CCTCTAACAAACTTAGCTAAACTATCA 57.129 33.333 7.74 0.00 0.00 2.15
690 2272 9.872721 ACCTCTAACAAACTTAGCTAAACTATC 57.127 33.333 7.74 0.00 0.00 2.08
691 2273 9.654663 CACCTCTAACAAACTTAGCTAAACTAT 57.345 33.333 7.74 0.00 0.00 2.12
692 2274 8.863086 TCACCTCTAACAAACTTAGCTAAACTA 58.137 33.333 7.74 0.00 0.00 2.24
693 2275 7.732996 TCACCTCTAACAAACTTAGCTAAACT 58.267 34.615 7.74 0.00 0.00 2.66
694 2276 7.117956 CCTCACCTCTAACAAACTTAGCTAAAC 59.882 40.741 7.74 0.00 0.00 2.01
695 2277 7.159372 CCTCACCTCTAACAAACTTAGCTAAA 58.841 38.462 7.74 0.00 0.00 1.85
696 2278 6.295688 CCCTCACCTCTAACAAACTTAGCTAA 60.296 42.308 5.94 5.94 0.00 3.09
697 2279 5.187186 CCCTCACCTCTAACAAACTTAGCTA 59.813 44.000 0.00 0.00 0.00 3.32
698 2280 4.020128 CCCTCACCTCTAACAAACTTAGCT 60.020 45.833 0.00 0.00 0.00 3.32
699 2281 4.254492 CCCTCACCTCTAACAAACTTAGC 58.746 47.826 0.00 0.00 0.00 3.09
700 2282 4.254492 GCCCTCACCTCTAACAAACTTAG 58.746 47.826 0.00 0.00 0.00 2.18
701 2283 3.649023 TGCCCTCACCTCTAACAAACTTA 59.351 43.478 0.00 0.00 0.00 2.24
702 2284 2.441750 TGCCCTCACCTCTAACAAACTT 59.558 45.455 0.00 0.00 0.00 2.66
703 2285 2.039084 CTGCCCTCACCTCTAACAAACT 59.961 50.000 0.00 0.00 0.00 2.66
704 2286 2.038557 TCTGCCCTCACCTCTAACAAAC 59.961 50.000 0.00 0.00 0.00 2.93
705 2287 2.334977 TCTGCCCTCACCTCTAACAAA 58.665 47.619 0.00 0.00 0.00 2.83
706 2288 2.024176 TCTGCCCTCACCTCTAACAA 57.976 50.000 0.00 0.00 0.00 2.83
707 2289 2.024176 TTCTGCCCTCACCTCTAACA 57.976 50.000 0.00 0.00 0.00 2.41
708 2290 4.345257 TCATATTCTGCCCTCACCTCTAAC 59.655 45.833 0.00 0.00 0.00 2.34
709 2291 4.345257 GTCATATTCTGCCCTCACCTCTAA 59.655 45.833 0.00 0.00 0.00 2.10
710 2292 3.898123 GTCATATTCTGCCCTCACCTCTA 59.102 47.826 0.00 0.00 0.00 2.43
711 2293 2.703007 GTCATATTCTGCCCTCACCTCT 59.297 50.000 0.00 0.00 0.00 3.69
712 2294 2.703007 AGTCATATTCTGCCCTCACCTC 59.297 50.000 0.00 0.00 0.00 3.85
713 2295 2.769209 AGTCATATTCTGCCCTCACCT 58.231 47.619 0.00 0.00 0.00 4.00
714 2296 3.209410 CAAGTCATATTCTGCCCTCACC 58.791 50.000 0.00 0.00 0.00 4.02
715 2297 3.209410 CCAAGTCATATTCTGCCCTCAC 58.791 50.000 0.00 0.00 0.00 3.51
716 2298 2.421952 GCCAAGTCATATTCTGCCCTCA 60.422 50.000 0.00 0.00 0.00 3.86
717 2299 2.158696 AGCCAAGTCATATTCTGCCCTC 60.159 50.000 0.00 0.00 0.00 4.30
718 2300 1.849039 AGCCAAGTCATATTCTGCCCT 59.151 47.619 0.00 0.00 0.00 5.19
719 2301 2.355010 AGCCAAGTCATATTCTGCCC 57.645 50.000 0.00 0.00 0.00 5.36
720 2302 3.406764 CCTAGCCAAGTCATATTCTGCC 58.593 50.000 0.00 0.00 0.00 4.85
721 2303 3.181450 ACCCTAGCCAAGTCATATTCTGC 60.181 47.826 0.00 0.00 0.00 4.26
722 2304 4.346418 AGACCCTAGCCAAGTCATATTCTG 59.654 45.833 0.00 0.00 32.82 3.02
723 2305 4.346418 CAGACCCTAGCCAAGTCATATTCT 59.654 45.833 0.00 0.00 32.82 2.40
724 2306 4.503991 CCAGACCCTAGCCAAGTCATATTC 60.504 50.000 0.00 0.00 32.82 1.75
725 2307 3.392616 CCAGACCCTAGCCAAGTCATATT 59.607 47.826 0.00 0.00 32.82 1.28
726 2308 2.975489 CCAGACCCTAGCCAAGTCATAT 59.025 50.000 0.00 0.00 32.82 1.78
727 2309 2.398588 CCAGACCCTAGCCAAGTCATA 58.601 52.381 0.00 0.00 32.82 2.15
728 2310 1.207791 CCAGACCCTAGCCAAGTCAT 58.792 55.000 0.00 0.00 32.82 3.06
729 2311 1.553690 GCCAGACCCTAGCCAAGTCA 61.554 60.000 0.00 0.00 32.82 3.41
730 2312 1.222113 GCCAGACCCTAGCCAAGTC 59.778 63.158 0.00 0.00 0.00 3.01
731 2313 2.301738 GGCCAGACCCTAGCCAAGT 61.302 63.158 0.00 0.00 46.34 3.16
732 2314 2.592308 GGCCAGACCCTAGCCAAG 59.408 66.667 0.00 0.00 46.34 3.61
741 2323 1.973812 GCAACTTCAGGGCCAGACC 60.974 63.158 6.18 0.00 37.93 3.85
742 2324 0.538287 AAGCAACTTCAGGGCCAGAC 60.538 55.000 6.18 0.00 0.00 3.51
743 2325 0.185901 AAAGCAACTTCAGGGCCAGA 59.814 50.000 6.18 0.00 0.00 3.86
744 2326 0.316204 CAAAGCAACTTCAGGGCCAG 59.684 55.000 6.18 0.00 0.00 4.85
745 2327 0.396974 ACAAAGCAACTTCAGGGCCA 60.397 50.000 6.18 0.00 0.00 5.36
746 2328 0.315251 GACAAAGCAACTTCAGGGCC 59.685 55.000 0.00 0.00 0.00 5.80
747 2329 1.322442 AGACAAAGCAACTTCAGGGC 58.678 50.000 0.00 0.00 0.00 5.19
748 2330 4.557496 GCTAAAGACAAAGCAACTTCAGGG 60.557 45.833 0.00 0.00 38.63 4.45
749 2331 4.276926 AGCTAAAGACAAAGCAACTTCAGG 59.723 41.667 0.00 0.00 41.32 3.86
750 2332 5.429957 AGCTAAAGACAAAGCAACTTCAG 57.570 39.130 0.00 0.00 41.32 3.02
751 2333 5.835113 AAGCTAAAGACAAAGCAACTTCA 57.165 34.783 0.00 0.00 41.32 3.02
752 2334 6.751888 TCAAAAGCTAAAGACAAAGCAACTTC 59.248 34.615 0.00 0.00 41.32 3.01
753 2335 6.630071 TCAAAAGCTAAAGACAAAGCAACTT 58.370 32.000 0.00 0.00 41.32 2.66
754 2336 6.207691 TCAAAAGCTAAAGACAAAGCAACT 57.792 33.333 0.00 0.00 41.32 3.16
755 2337 6.697019 TCATCAAAAGCTAAAGACAAAGCAAC 59.303 34.615 0.00 0.00 41.32 4.17
756 2338 6.804677 TCATCAAAAGCTAAAGACAAAGCAA 58.195 32.000 0.00 0.00 41.32 3.91
757 2339 6.389830 TCATCAAAAGCTAAAGACAAAGCA 57.610 33.333 0.00 0.00 41.32 3.91
758 2340 7.383300 ACAATCATCAAAAGCTAAAGACAAAGC 59.617 33.333 0.00 0.00 39.08 3.51
761 2343 9.897744 CTTACAATCATCAAAAGCTAAAGACAA 57.102 29.630 0.00 0.00 0.00 3.18
763 2345 8.730680 TCCTTACAATCATCAAAAGCTAAAGAC 58.269 33.333 0.00 0.00 0.00 3.01
765 2347 9.727627 GATCCTTACAATCATCAAAAGCTAAAG 57.272 33.333 0.00 0.00 0.00 1.85
767 2349 9.466497 AAGATCCTTACAATCATCAAAAGCTAA 57.534 29.630 0.00 0.00 0.00 3.09
770 2352 7.765307 TCAAGATCCTTACAATCATCAAAAGC 58.235 34.615 0.00 0.00 0.00 3.51
773 2355 9.465199 TCAATCAAGATCCTTACAATCATCAAA 57.535 29.630 0.00 0.00 0.00 2.69
774 2356 9.117183 CTCAATCAAGATCCTTACAATCATCAA 57.883 33.333 0.00 0.00 0.00 2.57
775 2357 8.270030 ACTCAATCAAGATCCTTACAATCATCA 58.730 33.333 0.00 0.00 0.00 3.07
776 2358 8.674263 ACTCAATCAAGATCCTTACAATCATC 57.326 34.615 0.00 0.00 0.00 2.92
791 2373 9.612620 GGTGAAAACTTGTATTACTCAATCAAG 57.387 33.333 0.00 0.00 36.46 3.02
792 2374 8.573035 GGGTGAAAACTTGTATTACTCAATCAA 58.427 33.333 0.00 0.00 0.00 2.57
796 2378 5.470777 CCGGGTGAAAACTTGTATTACTCAA 59.529 40.000 0.00 0.00 0.00 3.02
797 2379 4.998672 CCGGGTGAAAACTTGTATTACTCA 59.001 41.667 0.00 0.00 0.00 3.41
799 2381 5.231702 TCCGGGTGAAAACTTGTATTACT 57.768 39.130 0.00 0.00 0.00 2.24
800 2382 5.945466 TTCCGGGTGAAAACTTGTATTAC 57.055 39.130 0.00 0.00 0.00 1.89
801 2383 6.956202 TTTTCCGGGTGAAAACTTGTATTA 57.044 33.333 0.00 0.00 45.64 0.98
828 2410 9.458727 TGAGTGTAAGTGTAGTATAGCTAAGTT 57.541 33.333 0.00 0.00 0.00 2.66
829 2411 8.891720 GTGAGTGTAAGTGTAGTATAGCTAAGT 58.108 37.037 0.00 0.00 0.00 2.24
830 2412 8.344098 GGTGAGTGTAAGTGTAGTATAGCTAAG 58.656 40.741 0.00 0.00 0.00 2.18
831 2413 8.051535 AGGTGAGTGTAAGTGTAGTATAGCTAA 58.948 37.037 0.00 0.00 0.00 3.09
832 2414 7.571919 AGGTGAGTGTAAGTGTAGTATAGCTA 58.428 38.462 0.00 0.00 0.00 3.32
833 2415 6.424883 AGGTGAGTGTAAGTGTAGTATAGCT 58.575 40.000 0.00 0.00 0.00 3.32
834 2416 6.238703 GGAGGTGAGTGTAAGTGTAGTATAGC 60.239 46.154 0.00 0.00 0.00 2.97
836 2418 6.724351 TGGAGGTGAGTGTAAGTGTAGTATA 58.276 40.000 0.00 0.00 0.00 1.47
837 2419 5.577100 TGGAGGTGAGTGTAAGTGTAGTAT 58.423 41.667 0.00 0.00 0.00 2.12
838 2420 4.989277 TGGAGGTGAGTGTAAGTGTAGTA 58.011 43.478 0.00 0.00 0.00 1.82
840 2422 3.367498 GCTGGAGGTGAGTGTAAGTGTAG 60.367 52.174 0.00 0.00 0.00 2.74
841 2423 2.561419 GCTGGAGGTGAGTGTAAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
847 2451 0.409876 AGGAGCTGGAGGTGAGTGTA 59.590 55.000 0.00 0.00 0.00 2.90
918 2553 2.836981 AGACTCTGTGGAAATGGAGGAG 59.163 50.000 0.00 0.00 0.00 3.69
919 2554 2.907892 AGACTCTGTGGAAATGGAGGA 58.092 47.619 0.00 0.00 0.00 3.71
931 2566 3.835395 AGTAGCTTAGCCAAAGACTCTGT 59.165 43.478 0.00 0.00 37.38 3.41
932 2567 4.464069 AGTAGCTTAGCCAAAGACTCTG 57.536 45.455 0.00 0.00 37.38 3.35
933 2568 5.265989 AGTAGTAGCTTAGCCAAAGACTCT 58.734 41.667 0.00 0.00 37.38 3.24
934 2569 5.358725 AGAGTAGTAGCTTAGCCAAAGACTC 59.641 44.000 0.00 8.03 37.38 3.36
996 2676 1.227380 CCTCGAGCTTTCCATCCGG 60.227 63.158 6.99 0.00 0.00 5.14
1053 2733 3.719214 GGAGACGCCTTATTGCCG 58.281 61.111 0.00 0.00 0.00 5.69
1347 3027 2.112297 GGGCGGAAGTTGGTGACA 59.888 61.111 0.00 0.00 39.83 3.58
1365 3045 2.900838 GGATCGGACTCGGCGAGA 60.901 66.667 40.35 20.88 36.95 4.04
1410 3090 4.704833 GCCTTGGAGAGTGCGGCA 62.705 66.667 0.00 0.00 40.41 5.69
1416 3096 1.536662 AACCTCGGCCTTGGAGAGT 60.537 57.895 16.45 6.25 33.27 3.24
1418 3098 1.827399 GACAACCTCGGCCTTGGAGA 61.827 60.000 16.45 0.00 33.27 3.71
1512 3198 1.679680 GACGACGATGTATGGGAGGAA 59.320 52.381 0.00 0.00 0.00 3.36
1520 3206 0.454600 AGGCAACGACGACGATGTAT 59.545 50.000 15.32 2.73 42.66 2.29
1542 3228 1.289066 CGAAGAAGGTGACGAGGCA 59.711 57.895 0.00 0.00 0.00 4.75
1650 3336 3.127533 GCGTGCTGCTTCGGGATT 61.128 61.111 16.13 0.00 41.73 3.01
1674 3360 1.676384 GAGCTGCAGAGGGAAGTGT 59.324 57.895 20.43 0.00 0.00 3.55
1758 3444 0.467290 GGAACCTCCACAGTTTGCCA 60.467 55.000 0.00 0.00 36.28 4.92
1764 3450 0.178941 AGTACCGGAACCTCCACAGT 60.179 55.000 9.46 0.00 35.91 3.55
1765 3451 0.531200 GAGTACCGGAACCTCCACAG 59.469 60.000 9.46 0.00 35.91 3.66
1806 3492 1.373435 CCCCTTGGTGAGCACGTAA 59.627 57.895 0.00 0.00 0.00 3.18
1863 3549 0.804933 GGTAGAACACGACGGCATCC 60.805 60.000 0.00 0.00 0.00 3.51
2198 3956 3.020274 CTCTCTGCTGCTTGTACTCCTA 58.980 50.000 0.00 0.00 0.00 2.94
2216 3974 8.299990 ACAAGTCTATAGAGCAAATGTACTCT 57.700 34.615 1.64 0.00 45.15 3.24
2283 4044 4.959596 AGAGTATTTGCACTGCTGATTG 57.040 40.909 1.98 0.00 0.00 2.67
2354 4118 7.826252 TCCTCCAAACTCAAATCTCTAATCTTG 59.174 37.037 0.00 0.00 0.00 3.02
2368 4132 3.169099 CCTCTCTTCTCCTCCAAACTCA 58.831 50.000 0.00 0.00 0.00 3.41
2387 4151 2.930405 AGTACTCTTCCCCTCTTCTCCT 59.070 50.000 0.00 0.00 0.00 3.69
2437 4201 5.067273 CCTATACAGGAGAGTGAATCGAGT 58.933 45.833 0.00 0.00 45.91 4.18
2605 4721 9.679661 TGCAGATGTATTAACAAAAGGAATAGA 57.320 29.630 0.00 0.00 39.58 1.98
2972 5878 3.133721 GGCCGGATGCTTAGATGATAGAT 59.866 47.826 5.05 0.00 40.92 1.98
3157 6941 9.147732 TCTATCACATACAAGACCTGATATTGT 57.852 33.333 0.00 0.00 44.82 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.