AutoCloner

Multiple sequence alignment - TraesCS1B01G391700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G391700	chr1B	100.000	2273	0	0	1	2273	624872221	624874493	0.000000e+00	4198.0
1	TraesCS1B01G391700	chr1B	93.230	709	43	4	595	1301	545433771	545434476	0.000000e+00	1038.0
2	TraesCS1B01G391700	chr1B	92.686	711	50	2	595	1304	659717651	659716942	0.000000e+00	1024.0
3	TraesCS1B01G391700	chr1B	93.960	596	34	1	1	596	584317362	584317955	0.000000e+00	900.0
4	TraesCS1B01G391700	chr1B	93.367	603	37	3	1	602	545431948	545432548	0.000000e+00	889.0
5	TraesCS1B01G391700	chr1B	91.457	597	47	3	1	596	659719474	659718881	0.000000e+00	817.0
6	TraesCS1B01G391700	chr1B	95.726	234	10	0	1070	1303	584319405	584319638	5.930000e-101	377.0
7	TraesCS1B01G391700	chr1B	93.281	253	16	1	595	846	584319151	584319403	2.760000e-99	372.0
8	TraesCS1B01G391700	chr1B	74.122	541	105	16	1351	1865	624815819	624816350	8.290000e-45	191.0
9	TraesCS1B01G391700	chr1D	91.340	970	61	9	1316	2273	454401928	454402886	0.000000e+00	1304.0
10	TraesCS1B01G391700	chr1D	78.862	123	24	2	2054	2175	348900392	348900271	5.200000e-12	82.4
11	TraesCS1B01G391700	chr7B	94.818	714	35	2	595	1306	11598771	11599484	0.000000e+00	1112.0
12	TraesCS1B01G391700	chr7B	94.276	594	32	2	3	596	11596950	11597541	0.000000e+00	907.0
13	TraesCS1B01G391700	chr7B	72.305	603	141	21	627	1218	103141047	103141634	5.020000e-37	165.0
14	TraesCS1B01G391700	chr4B	94.220	692	37	3	595	1283	278429173	278428482	0.000000e+00	1053.0
15	TraesCS1B01G391700	chr4B	93.624	596	36	1	1	596	278430996	278430403	0.000000e+00	889.0
16	TraesCS1B01G391700	chr3A	92.525	709	52	1	595	1302	508529347	508530055	0.000000e+00	1014.0
17	TraesCS1B01G391700	chr3A	91.737	593	47	1	1	593	508527523	508528113	0.000000e+00	822.0
18	TraesCS1B01G391700	chr3A	91.813	342	23	1	962	1303	25004872	25005208	2.640000e-129	472.0
19	TraesCS1B01G391700	chr3B	92.373	708	53	1	595	1301	773031148	773030441	0.000000e+00	1007.0
20	TraesCS1B01G391700	chr3B	85.430	151	20	2	2041	2189	609892547	609892397	3.020000e-34	156.0
21	TraesCS1B01G391700	chr3B	90.196	51	5	0	128	178	654055657	654055707	1.460000e-07	67.6
22	TraesCS1B01G391700	chr1A	91.831	710	56	2	595	1303	108919685	108918977	0.000000e+00	989.0
23	TraesCS1B01G391700	chr1A	91.779	596	47	1	1	596	108921508	108920915	0.000000e+00	828.0
24	TraesCS1B01G391700	chr3D	88.321	137	16	0	2053	2189	263830514	263830378	5.020000e-37	165.0
25	TraesCS1B01G391700	chr2B	84.672	137	21	0	2053	2189	272458979	272459115	1.090000e-28	137.0
26	TraesCS1B01G391700	chr2B	84.444	135	20	1	2049	2182	98613585	98613719	5.090000e-27	132.0
27	TraesCS1B01G391700	chr2B	84.444	135	20	1	2049	2182	98618428	98618562	5.090000e-27	132.0
28	TraesCS1B01G391700	chrUn	85.714	126	17	1	2058	2182	345013779	345013654	5.090000e-27	132.0
29	TraesCS1B01G391700	chr6D	83.333	138	21	2	2054	2189	41334876	41334739	2.370000e-25	126.0
30	TraesCS1B01G391700	chr5A	95.000	40	2	0	140	179	33137198	33137237	1.880000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G391700	chr1B	624872221	624874493	2272	False	4198.000000	4198	100.000000	1	2273	1	chr1B.!!$F2	2272
1	TraesCS1B01G391700	chr1B	545431948	545434476	2528	False	963.500000	1038	93.298500	1	1301	2	chr1B.!!$F3	1300
2	TraesCS1B01G391700	chr1B	659716942	659719474	2532	True	920.500000	1024	92.071500	1	1304	2	chr1B.!!$R1	1303
3	TraesCS1B01G391700	chr1B	584317362	584319638	2276	False	549.666667	900	94.322333	1	1303	3	chr1B.!!$F4	1302
4	TraesCS1B01G391700	chr1D	454401928	454402886	958	False	1304.000000	1304	91.340000	1316	2273	1	chr1D.!!$F1	957
5	TraesCS1B01G391700	chr7B	11596950	11599484	2534	False	1009.500000	1112	94.547000	3	1306	2	chr7B.!!$F2	1303
6	TraesCS1B01G391700	chr4B	278428482	278430996	2514	True	971.000000	1053	93.922000	1	1283	2	chr4B.!!$R1	1282
7	TraesCS1B01G391700	chr3A	508527523	508530055	2532	False	918.000000	1014	92.131000	1	1302	2	chr3A.!!$F2	1301
8	TraesCS1B01G391700	chr3B	773030441	773031148	707	True	1007.000000	1007	92.373000	595	1301	1	chr3B.!!$R2	706
9	TraesCS1B01G391700	chr1A	108918977	108921508	2531	True	908.500000	989	91.805000	1	1303	2	chr1A.!!$R1	1302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
729	1963	1.085091	CGCACGAGGTAGACACTAGT	58.915	55.0	0.0	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1608	2855	0.109342	AGGTTGAGACTGCAGTTGGG	59.891	55.0	22.65	0.0	0.0	4.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
67	68	2.611971	GGACGCCTCATTACTGACAACA	60.612	50.000	0.00	0.00	0.00	3.33
141	142	3.681897	AGAACTACTCTTGCGCAATCAAG	59.318	43.478	25.26	21.83	43.53	3.02
249	250	6.112734	TGTCAGACTTGTTATGAAGTGTGTT	58.887	36.000	1.31	0.00	44.01	3.32
457	458	4.919774	TGGGTAAACCATCTGCTCTTTA	57.080	40.909	0.81	0.00	46.80	1.85
504	505	2.223923	GGCTGATACTGAGAGTGCGAAT	60.224	50.000	0.00	0.00	0.00	3.34
547	548	4.020218	GCATCTATGGTATTGCCTCTGGTA	60.020	45.833	0.00	0.00	38.35	3.25
576	577	5.946377	TGTCAACAGAGAGAAGAGTGCTATA	59.054	40.000	0.00	0.00	0.00	1.31
577	578	6.605194	TGTCAACAGAGAGAAGAGTGCTATAT	59.395	38.462	0.00	0.00	0.00	0.86
673	1907	3.118261	ACTCAAGGAACAAGCTGACTCAA	60.118	43.478	0.00	0.00	0.00	3.02
675	1909	1.889545	AGGAACAAGCTGACTCAAGC	58.110	50.000	0.00	0.00	43.88	4.01
693	1927	2.206635	CCGAGGACAGGCTTGATCT	58.793	57.895	1.40	0.00	0.00	2.75
729	1963	1.085091	CGCACGAGGTAGACACTAGT	58.915	55.000	0.00	0.00	0.00	2.57
778	2012	2.233605	TAATGCTGTCGGGACACGGG	62.234	60.000	0.00	0.00	44.45	5.28
1005	2240	4.576463	GGCTTCTCAAACGTAATCATGGAT	59.424	41.667	0.00	0.00	0.00	3.41
1263	2498	1.220749	GGACTGCCCAGCGAATACA	59.779	57.895	0.00	0.00	34.14	2.29
1332	2567	1.702182	TTCTCTTTGCATTGCACCCA	58.298	45.000	11.66	0.00	38.71	4.51
1333	2568	0.961019	TCTCTTTGCATTGCACCCAC	59.039	50.000	11.66	0.00	38.71	4.61
1346	2581	2.290008	TGCACCCACGTATCAAACAGAT	60.290	45.455	0.00	0.00	40.86	2.90
1378	2613	2.204748	CCATGGGCAAGGTCATTGG	58.795	57.895	2.85	0.00	39.47	3.16
1396	2631	2.811317	CGCAACTGCCTCCTCGTC	60.811	66.667	0.00	0.00	37.91	4.20
1428	2663	2.605823	CGGAAGAGCGATGGTAGTGATC	60.606	54.545	0.00	0.00	0.00	2.92
1429	2664	2.362397	GGAAGAGCGATGGTAGTGATCA	59.638	50.000	0.00	0.00	0.00	2.92
1430	2665	3.551863	GGAAGAGCGATGGTAGTGATCAG	60.552	52.174	0.00	0.00	0.00	2.90
1431	2666	1.959985	AGAGCGATGGTAGTGATCAGG	59.040	52.381	0.00	0.00	0.00	3.86
1434	2669	1.409064	GCGATGGTAGTGATCAGGACA	59.591	52.381	0.00	0.00	0.00	4.02
1435	2670	2.036475	GCGATGGTAGTGATCAGGACAT	59.964	50.000	0.00	0.00	0.00	3.06
1440	2678	5.027293	TGGTAGTGATCAGGACATCAATG	57.973	43.478	0.00	0.00	34.50	2.82
1473	2711	1.367471	CCGATCTGGCGGCTATCAA	59.633	57.895	19.51	0.00	45.38	2.57
1491	2729	6.884295	GCTATCAATTGGCCCATATACAGTAA	59.116	38.462	5.42	0.00	0.00	2.24
1504	2742	1.005394	CAGTAACGCGGGAAGTGGT	60.005	57.895	12.47	0.00	33.90	4.16
1506	2744	2.090524	GTAACGCGGGAAGTGGTCG	61.091	63.158	12.47	0.00	33.90	4.79
1524	2771	2.048597	TCCACAGCGGCTACAACG	60.049	61.111	0.26	0.00	33.14	4.10
1534	2781	2.256158	CTACAACGTCGACCGCCA	59.744	61.111	10.58	0.00	41.42	5.69
1543	2790	2.511600	CGACCGCCATGAACCTCC	60.512	66.667	0.00	0.00	0.00	4.30
1561	2808	0.677731	CCTGGTGCACCTACATGTGG	60.678	60.000	34.75	19.96	36.73	4.17
1582	2829	4.386951	CGACCGGTGTGGCCATCA	62.387	66.667	14.63	6.28	43.94	3.07
1586	2833	0.550914	ACCGGTGTGGCCATCATTAT	59.449	50.000	9.72	0.00	43.94	1.28
1626	2873	0.108585	TCCCAACTGCAGTCTCAACC	59.891	55.000	21.95	0.00	0.00	3.77
1637	2884	0.790814	GTCTCAACCTTTTCCTCGCG	59.209	55.000	0.00	0.00	0.00	5.87
1675	2922	1.405463	CCCCTTTATGGCGAAAGAAGC	59.595	52.381	11.97	0.00	38.48	3.86
1698	2945	1.268794	CGACTACTTCTCTCATGCCGG	60.269	57.143	0.00	0.00	0.00	6.13
1700	2947	0.461548	CTACTTCTCTCATGCCGGCA	59.538	55.000	34.80	34.80	0.00	5.69
1707	2954	2.682856	TCTCTCATGCCGGCAATAAAAC	59.317	45.455	36.33	0.00	0.00	2.43
1757	3004	0.551879	TCCGTTCAACCCCCTTCAAA	59.448	50.000	0.00	0.00	0.00	2.69
1768	3015	4.868900	CTTCAAATCGGCGGCGCG	62.869	66.667	28.25	20.59	0.00	6.86
1874	3121	5.476614	GAGCTTGCCATTTCAAAGATTTCT	58.523	37.500	0.00	0.00	0.00	2.52
1902	3149	6.602410	TTACATTCCTTTGCCATCAATGAA	57.398	33.333	0.00	0.00	31.98	2.57
1916	3163	8.772705	TGCCATCAATGAAAAACAATTCTTAAC	58.227	29.630	0.00	0.00	0.00	2.01
1917	3164	8.229811	GCCATCAATGAAAAACAATTCTTAACC	58.770	33.333	0.00	0.00	0.00	2.85
1918	3165	9.270640	CCATCAATGAAAAACAATTCTTAACCA	57.729	29.630	0.00	0.00	0.00	3.67
1930	3177	9.582648	AACAATTCTTAACCAATAGTACAACCT	57.417	29.630	0.00	0.00	0.00	3.50
1931	3178	9.582648	ACAATTCTTAACCAATAGTACAACCTT	57.417	29.630	0.00	0.00	0.00	3.50
1936	3183	4.316025	ACCAATAGTACAACCTTGGCAT	57.684	40.909	12.80	0.00	41.50	4.40
2013	3260	7.410513	CGTTGATAGTGTACTAAAGTGAGCAAC	60.411	40.741	0.00	0.00	31.39	4.17
2023	3270	0.111061	AGTGAGCAACTGGAATGCCA	59.889	50.000	0.00	0.00	44.91	4.92
2025	3272	1.547372	GTGAGCAACTGGAATGCCAAT	59.453	47.619	0.00	0.00	45.41	3.16
2060	3307	8.703604	TCTGGTTTATTTTCTCTTACATCTCG	57.296	34.615	0.00	0.00	0.00	4.04
2092	3339	5.126061	CCTAGGTTCTCATTTCATTTGGTGG	59.874	44.000	0.00	0.00	0.00	4.61
2154	3401	6.529220	TGGTGGGATTTTAATTCCAAGTTTG	58.471	36.000	4.03	0.00	45.53	2.93
2169	3416	5.000591	CCAAGTTTGGTTTTCTTGTTTGGT	58.999	37.500	2.66	0.00	43.43	3.67
2205	3452	0.839946	AAACTAGATGATGCCCCGCT	59.160	50.000	0.00	0.00	0.00	5.52
2229	3476	0.673644	GCGGCGGGATATTAGCATGT	60.674	55.000	9.78	0.00	0.00	3.21
2251	3498	1.847798	ATCAGCTTGCGTGGGGGTTA	61.848	55.000	0.00	0.00	0.00	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	2.833957	GTCCGGGGACAAAGGTGT	59.166	61.111	12.90	0.00	44.02	4.16
67	68	3.288809	GCTCTCGAAAGCAACCAAAAT	57.711	42.857	5.70	0.00	42.05	1.82
103	104	1.985895	GTTCTTCCCCTTCCTCCTTCA	59.014	52.381	0.00	0.00	0.00	3.02
141	142	6.302615	GTCATACGCTTTCATCATATCAAGC	58.697	40.000	0.00	0.00	38.64	4.01
249	250	3.660501	ACTGAGAAACGCACTGATGTA	57.339	42.857	0.00	0.00	0.00	2.29
465	466	2.652590	GCCTTCATGAAGATGAGGCTT	58.347	47.619	32.49	0.00	43.06	4.35
547	548	5.757320	CACTCTTCTCTCTGTTGACACATTT	59.243	40.000	0.00	0.00	30.39	2.32
576	577	6.773638	AGTGTGTATTTGGACTGAAGAAGAT	58.226	36.000	0.00	0.00	0.00	2.40
577	578	6.174720	AGTGTGTATTTGGACTGAAGAAGA	57.825	37.500	0.00	0.00	0.00	2.87
675	1909	0.179089	CAGATCAAGCCTGTCCTCGG	60.179	60.000	0.00	0.00	0.00	4.63
719	1953	2.041216	TGTCCAGGAGCACTAGTGTCTA	59.959	50.000	23.44	4.12	0.00	2.59
729	1963	2.669133	CGGGGAATGTCCAGGAGCA	61.669	63.158	0.00	0.00	38.64	4.26
868	2103	2.654877	GAAGGCGGTCGAGGAACA	59.345	61.111	0.00	0.00	0.00	3.18
1005	2240	2.036733	CACAACCTCCAAAGAGTCCGTA	59.963	50.000	0.00	0.00	38.58	4.02
1304	2539	7.201145	GTGCAATGCAAAGAGAATATGAGAAT	58.799	34.615	10.44	0.00	41.47	2.40
1305	2540	6.405065	GGTGCAATGCAAAGAGAATATGAGAA	60.405	38.462	10.44	0.00	41.47	2.87
1307	2542	5.279384	GGTGCAATGCAAAGAGAATATGAG	58.721	41.667	10.44	0.00	41.47	2.90
1308	2543	4.098349	GGGTGCAATGCAAAGAGAATATGA	59.902	41.667	10.44	0.00	41.47	2.15
1309	2544	4.142116	TGGGTGCAATGCAAAGAGAATATG	60.142	41.667	10.44	0.00	41.47	1.78
1310	2545	4.025360	TGGGTGCAATGCAAAGAGAATAT	58.975	39.130	10.44	0.00	41.47	1.28
1311	2546	3.193267	GTGGGTGCAATGCAAAGAGAATA	59.807	43.478	10.44	0.00	41.47	1.75
1312	2547	2.028748	GTGGGTGCAATGCAAAGAGAAT	60.029	45.455	10.44	0.00	41.47	2.40
1313	2548	1.340889	GTGGGTGCAATGCAAAGAGAA	59.659	47.619	10.44	0.00	41.47	2.87
1314	2549	0.961019	GTGGGTGCAATGCAAAGAGA	59.039	50.000	10.44	0.00	41.47	3.10
1379	2614	2.811317	GACGAGGAGGCAGTTGCG	60.811	66.667	0.00	0.00	43.26	4.85
1396	2631	4.082523	TCTTCCGCTTCTGCCCCG	62.083	66.667	0.00	0.00	35.36	5.73
1400	2635	1.520342	ATCGCTCTTCCGCTTCTGC	60.520	57.895	0.00	0.00	0.00	4.26
1401	2636	1.150567	CCATCGCTCTTCCGCTTCTG	61.151	60.000	0.00	0.00	0.00	3.02
1434	2669	4.201951	GTCCGCCACGACATTGAT	57.798	55.556	0.00	0.00	32.74	2.57
1460	2698	1.656441	GCCAATTGATAGCCGCCAG	59.344	57.895	7.12	0.00	0.00	4.85
1473	2711	3.408634	GCGTTACTGTATATGGGCCAAT	58.591	45.455	11.89	0.00	0.00	3.16
1491	2729	4.353437	GACGACCACTTCCCGCGT	62.353	66.667	4.92	0.00	37.97	6.01
1504	2742	2.566570	TTGTAGCCGCTGTGGACGA	61.567	57.895	12.29	0.00	42.00	4.20
1506	2744	2.380410	CGTTGTAGCCGCTGTGGAC	61.380	63.158	12.29	1.49	42.00	4.02
1512	2750	2.126580	GTCGACGTTGTAGCCGCT	60.127	61.111	0.00	0.00	0.00	5.52
1524	2771	1.810030	GAGGTTCATGGCGGTCGAC	60.810	63.158	7.13	7.13	0.00	4.20
1543	2790	1.308069	GCCACATGTAGGTGCACCAG	61.308	60.000	36.39	21.61	37.46	4.00
1608	2855	0.109342	AGGTTGAGACTGCAGTTGGG	59.891	55.000	22.65	0.00	0.00	4.12
1647	2894	1.230212	CCATAAAGGGGGTGGAGGC	59.770	63.158	0.00	0.00	34.94	4.70
1657	2904	1.531883	GCGCTTCTTTCGCCATAAAGG	60.532	52.381	0.00	0.00	46.18	3.11
1675	2922	1.862008	GCATGAGAGAAGTAGTCGGCG	60.862	57.143	0.00	0.00	0.00	6.46
1677	2924	1.268794	CGGCATGAGAGAAGTAGTCGG	60.269	57.143	0.00	0.00	0.00	4.79
1698	2945	3.758300	CCATCACGTCCTGTTTTATTGC	58.242	45.455	0.00	0.00	0.00	3.56
1700	2947	3.190535	GTGCCATCACGTCCTGTTTTATT	59.809	43.478	0.00	0.00	32.98	1.40
1741	2988	1.544246	CCGATTTGAAGGGGGTTGAAC	59.456	52.381	0.00	0.00	0.00	3.18
1768	3015	3.454371	AGGTAGTACGCCATTCATGAC	57.546	47.619	11.21	0.00	0.00	3.06
1772	3019	2.101917	GGCTAAGGTAGTACGCCATTCA	59.898	50.000	10.93	0.00	40.41	2.57
1850	3097	2.995466	TCTTTGAAATGGCAAGCTCG	57.005	45.000	0.00	0.00	0.00	5.03
1874	3121	9.381033	CATTGATGGCAAAGGAATGTAATTTTA	57.619	29.630	0.00	0.00	35.19	1.52
1887	3134	7.867752	AGAATTGTTTTTCATTGATGGCAAAG	58.132	30.769	0.00	0.00	37.59	2.77
1916	3163	4.269183	TCATGCCAAGGTTGTACTATTGG	58.731	43.478	11.98	11.98	44.12	3.16
1917	3164	6.319658	AGAATCATGCCAAGGTTGTACTATTG	59.680	38.462	0.00	0.00	0.00	1.90
1918	3165	6.319658	CAGAATCATGCCAAGGTTGTACTATT	59.680	38.462	0.00	0.00	0.00	1.73
1919	3166	5.824624	CAGAATCATGCCAAGGTTGTACTAT	59.175	40.000	0.00	0.00	0.00	2.12
1920	3167	5.045942	TCAGAATCATGCCAAGGTTGTACTA	60.046	40.000	0.00	0.00	0.00	1.82
1921	3168	4.012374	CAGAATCATGCCAAGGTTGTACT	58.988	43.478	0.00	0.00	0.00	2.73
1922	3169	4.009675	TCAGAATCATGCCAAGGTTGTAC	58.990	43.478	0.00	0.00	0.00	2.90
1923	3170	4.263462	ACTCAGAATCATGCCAAGGTTGTA	60.263	41.667	0.00	0.00	0.00	2.41
1924	3171	3.087031	CTCAGAATCATGCCAAGGTTGT	58.913	45.455	0.00	0.00	0.00	3.32
1925	3172	3.087031	ACTCAGAATCATGCCAAGGTTG	58.913	45.455	0.00	0.00	0.00	3.77
1926	3173	3.446442	ACTCAGAATCATGCCAAGGTT	57.554	42.857	0.00	0.00	0.00	3.50
1927	3174	3.446442	AACTCAGAATCATGCCAAGGT	57.554	42.857	0.00	0.00	0.00	3.50
1928	3175	3.119245	CCAAACTCAGAATCATGCCAAGG	60.119	47.826	0.00	0.00	0.00	3.61
1929	3176	3.675228	GCCAAACTCAGAATCATGCCAAG	60.675	47.826	0.00	0.00	0.00	3.61
1930	3177	2.231964	GCCAAACTCAGAATCATGCCAA	59.768	45.455	0.00	0.00	0.00	4.52
1931	3178	1.820519	GCCAAACTCAGAATCATGCCA	59.179	47.619	0.00	0.00	0.00	4.92
1966	3213	8.033038	TCAACGCTTATCATACTAAACTTGTCT	58.967	33.333	0.00	0.00	0.00	3.41
2023	3270	9.247861	AGAAAATAAACCAGAGTCTAATGCATT	57.752	29.630	17.56	17.56	0.00	3.56
2025	3272	8.103305	AGAGAAAATAAACCAGAGTCTAATGCA	58.897	33.333	0.00	0.00	0.00	3.96
2034	3281	8.812329	CGAGATGTAAGAGAAAATAAACCAGAG	58.188	37.037	0.00	0.00	0.00	3.35
2060	3307	2.561478	TGAGAACCTAGGTGCCAAAC	57.439	50.000	17.14	6.13	0.00	2.93
2092	3339	8.146412	CCTAGGAATGGGATTTCATTTCATTTC	58.854	37.037	1.05	0.00	37.47	2.17
2154	3401	4.180817	CCTGACAACCAAACAAGAAAACC	58.819	43.478	0.00	0.00	0.00	3.27
2169	3416	6.361433	TCTAGTTTCACAAATTCCCTGACAA	58.639	36.000	0.00	0.00	0.00	3.18
2205	3452	0.319211	CTAATATCCCGCCGCAACGA	60.319	55.000	0.00	0.00	34.06	3.85
2215	3462	5.251764	AGCTGATTGACATGCTAATATCCC	58.748	41.667	0.00	0.00	33.62	3.85
2229	3476	1.675310	CCCCACGCAAGCTGATTGA	60.675	57.895	10.23	0.00	41.83	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.